RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3952
(252 letters)
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 214 bits (547), Expect = 2e-68
Identities = 48/251 (19%), Positives = 77/251 (30%), Gaps = 50/251 (19%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPES---VTISTKQGDHLESSYALVCAGLQADEMALK 57
+ G ++ + + + + PE + + L + AGL A +A +
Sbjct: 156 YQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARR 215
Query: 58 SGCSLE---PAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
P +G Y L A + IYPVP LGVH T + G G
Sbjct: 216 IEGIPRDSIPPEYLCKGSYFTL--AGRAPFSRLIYPVPQH--AGLGVHLTLDLGGQAKFG 271
Query: 115 PNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELK 174
P+ E Y ++
Sbjct: 272 PDTEW-IATEDYTLDPRRADVF---------------------------------YAAVR 297
Query: 175 QYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVF-----HSAGRTLHCRNAPSPAATSS 229
Y + G + G +G+R + +S + DF H ++ SP T+S
Sbjct: 298 SYWPALPDGALAPGYTGIRPK-ISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTAS 356
Query: 230 LAIAKHILNEL 240
LAIA+ L L
Sbjct: 357 LAIAEETLARL 367
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
LG EI + V + + E++ I T GD + +++ +V +G+ + + G L A
Sbjct: 176 MLGAEIFEHTPVLHVERDGEALFIKTPSGD-VWANHVVVASGVWSGMFFKQLG--LNNAF 232
Query: 67 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
+P +GE L + L + + + PR G + +G
Sbjct: 233 LPVKGECLSVWNDDIPLTK----TLYHD-----HCYIVPRKSGRLVVG 271
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 43.0 bits (102), Expect = 4e-05
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 17/114 (14%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
G++ N + + + + G ++ + AG D +A +G +
Sbjct: 166 RNQGQVLCNHEALEIRRVDGAWEVRCDAGS-YRAAVLVNAAGAWCDAIAGLAGVRPLG-L 223
Query: 67 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFL-----GVHFTPRMDGSVWLGP 115
P R + P + ++P L + P G + P
Sbjct: 224 QPKRRSAFIFAPPP---------GIDCHDWPMLVSLDESFYLKPD-AGMLLGSP 267
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 40.0 bits (94), Expect = 5e-04
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 3/108 (2%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
G ++ + +VE F +P+SV I T G + +V G ++ K L+ +
Sbjct: 162 ARGAKVLTHTRVEDFDISPDSVKIETANGS-YTADKLIVSMGAWNSKLLSKLN--LDIPL 218
Query: 67 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
P+R + +P P + P G
Sbjct: 219 QPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKL 266
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 38/228 (16%), Positives = 66/228 (28%), Gaps = 58/228 (25%)
Query: 25 PESVTISTKQ-----GDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL--- 76
P S I T D ++S +V L + K +I YL L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSIYLELKVK 438
Query: 77 --NPAKQH--LVRGNIYPVP---DPN-----------FPFLGVHF-TPRMDGSVWLGPNA 117
N H +V + Y +P D + + +G H + L
Sbjct: 439 LENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 118 VLAF-------KKEGYRWRDF-SVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMR 169
L F + + W S+ L+ Y Y
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---------FYKPYICDN---DPKYERL 544
Query: 170 VNELKQYIEEIEAGDIQRGPSGVRAQ-ALSSSGDLVDDFVFHSAGRTL 216
VN + ++ +IE ++ + AL + D+ +F A + +
Sbjct: 545 VNAILDFLPKIEE-NLICSKYTDLLRIALMAE----DEAIFEEAHKQV 587
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 36.4 bits (84), Expect = 0.008
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALV 45
LG ++L + V + E+V + T + E+ Y +
Sbjct: 224 LLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVIS 262
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 35.9 bits (83), Expect = 0.008
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 7/116 (6%)
Query: 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 62
G +R + V + + V+++T +G + ++ G +++ G
Sbjct: 161 TLAQAAGATLRAGETVTELVPDADGVSVTTDRGT-YRAGKVVLACGPYTNDLLEPLG--A 217
Query: 63 EPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFP----FLGVHFTPRMDGSVWLG 114
A + A + P F G P G
Sbjct: 218 RLAYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRC 273
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 34.5 bits (80), Expect = 0.028
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 48
F E G + N + S V ++ G +E S+AL+ G
Sbjct: 233 FAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIG 276
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 34.0 bits (79), Expect = 0.036
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 48
G IR +V + + + + G+ LE+ LV G
Sbjct: 222 GLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVG 261
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 33.6 bits (77), Expect = 0.059
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVC 46
LG ++ LN V + K N T+ +E+S ++
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILA 263
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 32.9 bits (75), Expect = 0.091
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVC 46
+ + EIRL V ++ + V ++ K G ++ +V
Sbjct: 211 DAMSQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVA 254
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 32.6 bits (75), Expect = 0.095
Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 18/150 (12%)
Query: 7 ELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPA 65
E+G +I N +V F ++ E VT + T +G + + + + +A +G L P
Sbjct: 186 EMGVDIIQNCEVTGFIKDGEKVTGVKTTRGT-IHAGKVALAGAGHSSVLAEMAGFEL-P- 242
Query: 66 IVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR-MDGSVWLGPNAVLAFKKE 124
I + L+ + PV +H + + ++
Sbjct: 243 IQSHPLQALVSELFE---------PVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGY 293
Query: 125 GYRWRDFSVRELFSTL---RYPGFWRLGLK 151
G R F V + +P F R +
Sbjct: 294 GQR-GAFHVIQEQMAAAVELFPIFARAHVL 322
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 32.2 bits (73), Expect = 0.17
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDH 37
L N + V I T D
Sbjct: 215 TLEHPAERNVDITRITREDGKVHIHTTDWDR 245
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 31.8 bits (72), Expect = 0.19
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALV 45
+ ++LN+ V K +P VT+ T+ + Y +V
Sbjct: 226 IVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMV 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.22
Identities = 35/257 (13%), Positives = 63/257 (24%), Gaps = 111/257 (43%)
Query: 16 QQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE-------------------MAL 56
+ P S+ + + + S L + L ++ ++L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 57 K--------SG-----CSLEPAI-------------VPFRGE-------YL--------- 74
SG L + +PF +L
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 75 LLNPA----KQHLVRGNI-YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWR 129
LL PA + LV+ N+ + D P V+ T +G R
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIP---VYDT------------------FDGSDLR 469
Query: 130 DFS---VRELFSTL-RYPGFWRLGLKYTRYGSKEMIMSWF----P------SMRVNELKQ 175
S + + R P W ++ + P + + K
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTTQFK--------ATHILDFGPGGASGLGVLTHRNKD 521
Query: 176 --YIEEIEAGDIQRGPS 190
+ I AG + P
Sbjct: 522 GTGVRVIVAGTLDINPD 538
Score = 31.2 bits (70), Expect = 0.37
Identities = 53/303 (17%), Positives = 91/303 (30%), Gaps = 103/303 (33%)
Query: 1 MGEEFCE-------------------LGGEIRLNQQVESFKENPESVTI--STKQGDHLE 39
MG + + G I ++ NP ++TI ++G +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSI-----LDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 40 SSY-ALVCAGLQADEMALKSGCSLEPAI---------VPFRGEYLLLN------PAKQHL 83
+Y A++ E + E FR E LL+ PA L
Sbjct: 1686 ENYSAMIF------ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---L 1736
Query: 84 V------------RGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDF 131
+G I P F G H S LG A LA +
Sbjct: 1737 TLMEKAAFEDLKSKGLI---PADAT-FAG-H-------S--LGEYAALASLADV-----M 1777
Query: 132 SVRELFSTLRYPG-FWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPS 190
S+ L + Y G ++ + G M + +N + A Q
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-----IAIN-----PGRVAASFSQEALQ 1827
Query: 191 GVRAQALSSSGDLVDDFV--FHSAGRTLHCRNAPSPAATSSLAIAKHILNELR-REFKLD 247
V + +G LV+ + ++ + A A L ++LN ++ ++ +
Sbjct: 1828 YVVERVGKRTGWLVE--IVNYNVENQQYVA--AGDLRA---LDTVTNVLNFIKLQKIDII 1880
Query: 248 ELS 250
EL
Sbjct: 1881 ELQ 1883
Score = 28.5 bits (63), Expect = 2.4
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 32/107 (29%)
Query: 153 TR-----YGSKEMIM-----SWFPSMRVNE-----LKQYIEEIEAGDIQRGPSGVRAQAL 197
TR +GS E ++ S+F + ++ E L + E A D
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD-----------EP 54
Query: 198 SSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
++ +LV F+ + + + L E +
Sbjct: 55 TTPAELVGKFLGYVS------SLVEPSKVGQFDQVLNLCLTEFENCY 95
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 31.7 bits (73), Expect = 0.24
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSG 59
+ + + + ++V + V L++ ++ AG+ + ++A +G
Sbjct: 208 LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAG 267
Query: 60 CSLEP--AIV 67
L+P AI+
Sbjct: 268 LELDPRGAII 277
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 31.0 bits (70), Expect = 0.35
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 182 AGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHI 236
+G ++RGP+GV ++ S + L P A +L ++ +
Sbjct: 365 SGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKALLDSRGV 419
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.9 bits (71), Expect = 0.38
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 48
+ +++ G + L +V +F+E + + T G ++S A++C G
Sbjct: 197 LAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIG 244
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta
sandwich motif, isoprenyl-binding, protein binding;
1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A
2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A
1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Length = 141
Score = 29.5 bits (66), Expect = 0.50
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 123 KEG--YRWR-DFSV-RELFSTLRYP-GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYI 177
KEG YR + F V RE+ S ++Y +R G+K + + M+ S+ P E +
Sbjct: 42 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDK--TDYMVGSYGPRAAAYEFLTPV 99
Query: 178 EEIEAGDIQRG 188
EE G + RG
Sbjct: 100 EEAPKGMLARG 110
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 30.5 bits (69), Expect = 0.54
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 1 MGEEFCEL----GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMA 55
+ E G ++ N V+S + + I K G +E+ + + GL+ E+A
Sbjct: 228 LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELA 287
Query: 56 LKSGCSLEP 64
G ++
Sbjct: 288 KTGGLEIDS 296
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 30.3 bits (68), Expect = 0.59
Identities = 3/37 (8%), Positives = 10/37 (27%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 47
V S ++ ++ + G + +
Sbjct: 272 GYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTI 308
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 30.2 bits (69), Expect = 0.61
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 49
L ++ E+ + + ++T QG+ + ++ AG+
Sbjct: 81 VYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGV 119
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 30.0 bits (68), Expect = 0.73
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 7 ELGGEIRLNQQVESFKENPESVT--ISTKQGDH-LESSYALVCAG 48
LG +IR +V S ++ VT + +G H L ++Y + C G
Sbjct: 118 GLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDG 162
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 29.6 bits (67), Expect = 0.87
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 12/140 (8%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
E G N V + + + + VTI T G++ ++ A+VCAG ++ + +
Sbjct: 161 EAGCAQLFNCPVTAIRHDDDGVTIETADGEY-QAKKAIVCAGTWVKDLLPELP------V 213
Query: 67 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGY 126
P R + ++ V+ + P + ++ +G +
Sbjct: 214 QPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSAD 273
Query: 127 RWRDFS-----VRELFSTLR 141
F+ E F LR
Sbjct: 274 ERVPFAEVVSDGSEAFPFLR 293
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 29.6 bits (67), Expect = 0.95
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSY---ALVCA 47
+R VE +E V I + G + LV A
Sbjct: 123 QQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGA 164
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 29.2 bits (66), Expect = 1.2
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGD---HLESSYALVCAG 48
G E+ V + + + V + + D L + Y + C G
Sbjct: 119 GRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDG 163
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDH---LESSYALVCAG 48
E G EI +V +++ E+V ++ + + Y + C G
Sbjct: 160 EAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG 204
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.2 bits (64), Expect = 1.4
Identities = 3/41 (7%), Positives = 11/41 (26%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 47
+L +I + Q++ + + +
Sbjct: 329 DLRDQIVMGQRMVRLEYYDPGRDGHHGELTGPGGPAVAIQT 369
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 29.1 bits (66), Expect = 1.6
Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 7 ELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPA 65
E G ++ +V+ F + + T +G +++ + A+ + +G +
Sbjct: 161 EYGAKLLEYTEVKGFLIENNEIKGVKTNKGI-IKTGIVVNATNAWANLINAMAGIKTKIP 219
Query: 66 IVPFRGEYLLLNPAK 80
I P++ + ++ P K
Sbjct: 220 IEPYKHQAVITQPIK 234
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 28.3 bits (63), Expect = 2.4
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 182 AGDIQRGPSGVRAQALSSSGD----LVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHI 236
G I+RGP+GV + D L+ + G + A+
Sbjct: 357 VGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQP 415
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.3 bits (64), Expect = 2.5
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL 62
+ E G ++ + V+ N V + + ++ G + + L
Sbjct: 244 KNMEEHGIQLAFGETVKEVAGN-GKVEKIITDKNEYDVDMVILAVGFRPNTTLGNGKIDL 302
Query: 63 EP--AIV 67
A +
Sbjct: 303 FRNGAFL 309
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 28.2 bits (64), Expect = 2.7
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 8 LGGEIRLNQQVESFKENPESVTISTKQGDH---LESSYALVCAG 48
LG I +VES + VT++ + L++ L G
Sbjct: 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIG 268
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 26.9 bits (59), Expect = 3.2
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 141 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEE 179
R FW ++ YG + +FPS V E +
Sbjct: 56 RGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPG 94
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 28.1 bits (63), Expect = 3.4
Identities = 5/39 (12%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 47
++ + ++ E+V + G E++ ++ A
Sbjct: 111 PERYHTSKCLVGLSQDSETVQMRFSDGTKAEAN-WVIGA 148
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 28.0 bits (63), Expect = 3.5
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 47
++ ++V +E+ + VT+ G L+ A
Sbjct: 140 DSVQFGKRVTRCEEDADGVTVWFTDGSSASGD-LLIAA 176
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 27.7 bits (61), Expect = 3.7
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 63 EPAIVPFRGEYLLL-NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
+ A P RG+ +L+ +P K+ + + P + PR G V G
Sbjct: 193 DQAAEPIRGQTVLVKSPCKRCTMDSS--------DPASPAYIIPRPGGEVICG 237
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 27.5 bits (62), Expect = 4.5
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 9 GGEIRLNQQVESFKENPESVTISTKQGDH---LESSYALVCAG 48
G E+ N + +E + VT++ + +++ Y LV G
Sbjct: 225 GVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVG 267
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 27.5 bits (62), Expect = 4.8
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 48
E G ++RL + + ++T G ++++ +V +G
Sbjct: 144 EAGVQLRLETSIGEVERTASGFRVTTSAGT-VDAASLVVASG 184
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 27.5 bits (62), Expect = 4.8
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 145 FWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEE 179
F LK + + +M + P +L Q + +
Sbjct: 279 FVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLK 313
Score = 27.1 bits (61), Expect = 6.6
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 7 ELGGEIRLNQQVESF-KENPESVTISTKQGDHLESSYALVCAG 48
+LG +IR N VE+ EN ++ + + G+ LE+++ ++ G
Sbjct: 146 DLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVG 188
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 27.5 bits (62), Expect = 5.4
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGCSLEP--A 65
+RL + + + T G+ ++ ++ G++ + E+A + G + A
Sbjct: 203 HVNLRLQEITMKIEGEERVEKVVTDAGE-YKAELVILATGIKPNIELAKQLGVRIGETGA 261
Query: 66 IV 67
I
Sbjct: 262 IW 263
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 27.0 bits (59), Expect = 5.6
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 166 PSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHC 218
V +LK I + +I L ++G + + + T +
Sbjct: 19 QGTSVLDLKSQISQDMGFEIDM-------MTLVNNGFIAPNTELVTDDVTYYL 64
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 27.2 bits (60), Expect = 6.3
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 7 ELGGEIRLNQQVESFKENPESVTI----STKQGDHLESSYALVC 46
++ ++ N QV ++N + VT+ +K+ + + Y +VC
Sbjct: 250 DIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVC 293
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 26.9 bits (60), Expect = 6.6
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 1 MGEEFCELGGEIRLNQQVES 20
+ E G+I ++V
Sbjct: 195 LERIIMENKGKILTRKEVVE 214
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 6.9
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 9/28 (32%)
Query: 132 SVRELFSTLR-Y-----PGFWRLGLKYT 153
++++L ++L+ Y P L +K T
Sbjct: 21 ALKKLQASLKLYADDSAPA---LAIKAT 45
Score = 26.5 bits (57), Expect = 7.4
Identities = 5/28 (17%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 174 KQYIEEIEAGDIQR-GPSGVRAQALSSS 200
KQ +++++A ++ A A+ ++
Sbjct: 19 KQALKKLQA-SLKLYADDSAPALAIKAT 45
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 26.8 bits (59), Expect = 7.9
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYA--LVCA 47
I +V S K E VT+ G +S A +C
Sbjct: 252 DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICT 291
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 26.6 bits (59), Expect = 8.5
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 7 ELGGEIRLNQQVESFKENPESVT-----ISTKQGDHLESSYALVCAG 48
+G +R +++SF++ + V + T + + Y + C G
Sbjct: 147 AVGERLRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDG 193
>3jq0_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482}
Length = 493
Score = 26.7 bits (59), Expect = 9.3
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 192 VRAQA-LSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
VR +A S + + + + + IL E REF
Sbjct: 389 VRERAYGSKYFNEHKAEIAYPNDNDPEFYTDNKWMKPDNAGALEAILKERLREF 442
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 26.6 bits (59), Expect = 9.8
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 7 ELGGEIRLNQQVESFKENPESVTI-------STKQGDHLESSYALVCAG 48
+ GG IR ++ SF+++ + L + Y + G
Sbjct: 132 KHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADG 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,997,577
Number of extensions: 239237
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 55
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.1 bits)