RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3952
(252 letters)
>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 29.3 bits (66), Expect = 0.19
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 123 KEGYRWR---DFSV-RELFSTLRY-PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYI 177
KEG +R F V RE+ S ++Y +R G+K + + M+ S+ P E +
Sbjct: 41 KEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDK--TDYMVGSYGPRAAAYEFLTPV 98
Query: 178 EEIEAGDIQRG 188
EE G + RG
Sbjct: 99 EEAPKGMLARG 109
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 28.3 bits (63), Expect = 0.29
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 14/70 (20%)
Query: 166 PSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDD-------FVFHSAGRTLH- 217
V LK ++ + + Q L SG L+ D LH
Sbjct: 28 RGWSVGHLKAHLSRVYPERPR-----PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHL 82
Query: 218 -CRNAPSPAA 226
C P++
Sbjct: 83 VCNVKSGPSS 92
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 115
Score = 27.8 bits (61), Expect = 0.51
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 48
+ E +LG + L VE ++ LE+ LV G
Sbjct: 68 VAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 27.6 bits (61), Expect = 0.66
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 166 PSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTL 216
+ V+ LK+ + + + GP V+ L S+G ++++ +T+
Sbjct: 27 DATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN------SKTV 71
>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 210
Score = 26.5 bits (57), Expect = 2.5
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 92 PDPNFPFLGVHFTPRMDGSVWLGPNAVL 119
+P P+ P +D + ++ P A +
Sbjct: 10 ENPVTPWNPEPSAPVIDPTAYIDPQASV 37
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 26.7 bits (57), Expect = 2.9
Identities = 3/47 (6%), Positives = 12/47 (25%), Gaps = 2/47 (4%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALV 45
GG L+ ++ ++ + ++ +
Sbjct: 242 FARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIA 288
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
reductase subunit beta, DsrB {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 179
Score = 26.1 bits (57), Expect = 3.6
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 208 VFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREFK 245
+ H+ G +HC A + I K +++EL F
Sbjct: 9 IVHTQG-WIHCHTP----AIDASGIVKAVMDELYEYFT 41
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo
sapiens) [TaxId: 9606]}
Length = 192
Score = 25.6 bits (56), Expect = 4.6
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 181 EAGDIQRGPSGVRAQALSSSGD-LVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNE 239
+G+ RG ++ + +G L+ F+ AGR + A K +
Sbjct: 3 GSGEQPRGGGPTSSEQIMKTGALLLQGFIQDRAGRMGGEAPELALDPVPQDASTKKLSEC 62
Query: 240 LRR 242
L+R
Sbjct: 63 LKR 65
>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
1496]}
Length = 542
Score = 26.1 bits (57), Expect = 4.9
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 96 FPFLGVHFTPRMDGSVWL-GPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR 154
+L V F P + ++ L GP A A ++ +++ S+ F ++
Sbjct: 451 GKYLRVGFFPDVKTTINLSGPEAYAAAYQDLLMFKEGSMNIHLIEADLRNFEISKTNISQ 510
Query: 155 YGSKEMIMSW 164
+EM W
Sbjct: 511 STEQEMASLW 520
>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp.
[TaxId: 1409]}
Length = 88
Score = 24.2 bits (52), Expect = 7.9
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 6/40 (15%)
Query: 84 VRGNIYPVPDPNFPF------LGVHFTPRMDGSVWLGPNA 117
V+G V + + P + PR G + +G
Sbjct: 4 VKGECLSVWNDDIPLTKTLYHDHCYIVPRKSGRLVVGATM 43
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 152
Score = 24.4 bits (53), Expect = 9.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 152 YTRYGSKEMIMSWFPSMRVN 171
+ RY S ++ +FP ++ N
Sbjct: 18 WVRYPSSAVLKMYFPDIKFN 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 973,386
Number of extensions: 46164
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 11
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)