Query psy3954
Match_columns 268
No_of_seqs 286 out of 1850
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 21:35:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 1.7E-40 3.8E-45 293.7 21.6 231 23-268 149-401 (421)
2 KOG2059|consensus 100.0 9E-32 1.9E-36 239.4 13.3 207 53-263 4-241 (800)
3 cd08677 C2A_Synaptotagmin-13 C 99.9 8.7E-27 1.9E-31 169.7 12.1 108 159-268 1-115 (118)
4 cd08407 C2B_Synaptotagmin-13 C 99.9 2.3E-25 5.1E-30 168.3 10.1 111 158-268 1-120 (138)
5 cd08406 C2B_Synaptotagmin-12 C 99.9 1.2E-24 2.7E-29 164.5 10.6 110 159-268 2-118 (136)
6 cd08381 C2B_PI3K_class_II C2 d 99.9 7.3E-24 1.6E-28 157.8 12.7 106 158-264 1-112 (122)
7 cd04016 C2_Tollip C2 domain pr 99.9 3.8E-23 8.2E-28 152.9 13.6 111 54-167 2-121 (121)
8 cd08692 C2B_Tac2-N C2 domain s 99.9 3.7E-23 8E-28 154.3 12.5 109 160-268 2-118 (135)
9 cd08393 C2A_SLP-1_2 C2 domain 99.9 3.6E-23 7.7E-28 154.9 12.4 107 158-264 1-115 (125)
10 cd08392 C2A_SLP-3 C2 domain fi 99.9 5.4E-23 1.2E-27 154.2 13.0 106 158-263 1-114 (128)
11 cd08677 C2A_Synaptotagmin-13 C 99.9 3.1E-23 6.8E-28 151.1 11.1 105 28-148 1-118 (118)
12 cd08680 C2_Kibra C2 domain fou 99.9 1.2E-22 2.5E-27 151.1 12.7 104 160-263 2-113 (124)
13 cd04028 C2B_RIM1alpha C2 domai 99.9 2E-22 4.3E-27 153.4 13.9 106 157-263 16-126 (146)
14 cd08685 C2_RGS-like C2 domain 99.9 1.5E-22 3.3E-27 149.9 11.8 107 159-265 1-111 (119)
15 KOG1328|consensus 99.9 6.8E-24 1.5E-28 189.6 4.7 95 169-263 946-1049(1103)
16 cd04029 C2A_SLP-4_5 C2 domain 99.9 2.8E-22 6.1E-27 149.9 12.7 107 158-264 1-115 (125)
17 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 3.2E-22 7E-27 148.7 12.3 110 56-167 2-121 (121)
18 cd08682 C2_Rab11-FIP_classI C2 99.9 6.2E-22 1.3E-26 148.5 11.9 108 56-165 1-125 (126)
19 cd08408 C2B_Synaptotagmin-14_1 99.9 3.6E-22 7.8E-27 151.6 10.5 110 159-268 2-120 (138)
20 cd04028 C2B_RIM1alpha C2 domai 99.9 1.4E-21 3E-26 148.8 12.8 112 26-154 16-142 (146)
21 KOG1013|consensus 99.9 4.8E-23 1.1E-27 169.8 4.8 215 51-267 90-335 (362)
22 cd08393 C2A_SLP-1_2 C2 domain 99.9 1.3E-21 2.8E-26 146.4 11.6 107 28-149 2-125 (125)
23 cd08404 C2B_Synaptotagmin-4 C2 99.9 9.5E-22 2.1E-26 149.5 10.6 111 158-268 1-118 (136)
24 cd04042 C2A_MCTP_PRT C2 domain 99.9 3.4E-21 7.4E-26 143.5 13.1 111 55-168 1-120 (121)
25 cd04029 C2A_SLP-4_5 C2 domain 99.9 2.1E-21 4.6E-26 145.2 11.7 108 27-149 1-125 (125)
26 cd08409 C2B_Synaptotagmin-15 C 99.9 1.2E-21 2.6E-26 148.8 10.5 111 158-268 1-119 (137)
27 cd08402 C2B_Synaptotagmin-1 C2 99.9 1.3E-21 2.9E-26 148.7 10.6 111 158-268 1-118 (136)
28 cd08389 C2A_Synaptotagmin-14_1 99.9 3E-21 6.4E-26 144.2 11.8 109 26-150 1-124 (124)
29 cd08381 C2B_PI3K_class_II C2 d 99.9 2.9E-21 6.4E-26 143.8 11.6 103 28-148 2-121 (122)
30 cd04022 C2A_MCTP_PRT_plant C2 99.9 4.3E-21 9.3E-26 144.2 12.0 111 55-167 1-125 (127)
31 cd08405 C2B_Synaptotagmin-7 C2 99.9 2.2E-21 4.7E-26 147.5 10.3 111 158-268 1-118 (136)
32 cd08410 C2B_Synaptotagmin-17 C 99.9 2.3E-21 5E-26 147.0 10.3 105 159-263 1-112 (135)
33 cd08385 C2A_Synaptotagmin-1-5- 99.9 6.5E-21 1.4E-25 142.6 12.4 109 158-268 2-119 (124)
34 cd08403 C2B_Synaptotagmin-3-5- 99.9 3.3E-21 7.1E-26 146.2 10.7 110 159-268 1-117 (134)
35 cd08392 C2A_SLP-3 C2 domain fi 99.9 6.9E-21 1.5E-25 142.7 12.0 107 27-148 1-127 (128)
36 cd08400 C2_Ras_p21A1 C2 domain 99.9 1.7E-20 3.8E-25 140.5 13.8 112 53-168 3-123 (126)
37 cd08384 C2B_Rabphilin_Doc2 C2 99.9 4.6E-21 1E-25 145.2 10.8 109 160-268 1-116 (133)
38 cd08379 C2D_MCTP_PRT_plant C2 99.9 7.4E-21 1.6E-25 141.5 11.6 107 55-163 1-125 (126)
39 cd08388 C2A_Synaptotagmin-4-11 99.9 1.2E-20 2.6E-25 141.7 12.6 105 158-264 2-115 (128)
40 cd08389 C2A_Synaptotagmin-14_1 99.9 9.3E-21 2E-25 141.5 11.7 104 158-264 2-113 (124)
41 cd04031 C2A_RIM1alpha C2 domai 99.9 1.3E-20 2.9E-25 141.1 12.6 111 158-268 2-121 (125)
42 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.5E-20 3.4E-25 140.6 12.5 105 158-264 2-113 (124)
43 cd08678 C2_C21orf25-like C2 do 99.8 1.6E-20 3.4E-25 140.9 12.2 111 56-168 1-120 (126)
44 cd08385 C2A_Synaptotagmin-1-5- 99.8 1.3E-20 2.8E-25 141.0 11.7 109 26-149 1-123 (124)
45 cd08681 C2_fungal_Inn1p-like C 99.8 1.2E-20 2.6E-25 139.9 11.5 108 54-167 1-118 (118)
46 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.4E-20 2.9E-25 140.9 11.5 108 27-149 2-123 (124)
47 cd08388 C2A_Synaptotagmin-4-11 99.8 1.2E-20 2.6E-25 141.7 11.1 110 26-150 1-128 (128)
48 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 1.9E-20 4.2E-25 146.0 12.6 106 158-263 1-126 (162)
49 cd08521 C2A_SLP C2 domain firs 99.8 2.1E-20 4.6E-25 139.6 12.4 106 159-264 1-114 (123)
50 cd08375 C2_Intersectin C2 doma 99.8 3.5E-20 7.5E-25 140.5 13.6 115 47-168 8-136 (136)
51 cd04030 C2C_KIAA1228 C2 domain 99.8 3E-20 6.4E-25 139.6 12.9 106 158-263 2-116 (127)
52 cd08680 C2_Kibra C2 domain fou 99.8 2.3E-20 5E-25 138.8 11.7 104 30-148 3-124 (124)
53 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 3.1E-20 6.6E-25 138.3 12.4 109 56-166 2-120 (121)
54 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.5E-20 9.8E-25 136.4 12.4 105 55-167 1-114 (116)
55 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 3.3E-20 7.2E-25 140.5 11.7 110 56-167 2-132 (133)
56 cd08378 C2B_MCTP_PRT_plant C2 99.8 4.4E-20 9.5E-25 137.3 12.1 107 56-168 2-120 (121)
57 cd04036 C2_cPLA2 C2 domain pre 99.8 3.7E-20 8.1E-25 137.5 11.4 105 56-168 2-118 (119)
58 cd08395 C2C_Munc13 C2 domain t 99.8 2.6E-20 5.6E-25 137.5 10.2 96 55-152 1-114 (120)
59 cd08386 C2A_Synaptotagmin-7 C2 99.8 5.4E-20 1.2E-24 137.8 12.1 109 27-150 2-125 (125)
60 cd04019 C2C_MCTP_PRT_plant C2 99.8 6.2E-20 1.3E-24 141.2 12.6 111 56-168 2-132 (150)
61 COG5038 Ca2+-dependent lipid-b 99.8 3.6E-19 7.9E-24 167.3 19.5 208 50-265 707-1134(1227)
62 cd08395 C2C_Munc13 C2 domain t 99.8 8E-20 1.7E-24 134.8 11.4 95 171-265 1-102 (120)
63 cd04030 C2C_KIAA1228 C2 domain 99.8 9.8E-20 2.1E-24 136.8 12.1 108 27-149 2-127 (127)
64 cd08685 C2_RGS-like C2 domain 99.8 6.7E-20 1.5E-24 135.7 10.9 93 53-148 11-119 (119)
65 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.2E-19 4.9E-24 133.3 13.5 110 54-167 1-118 (119)
66 cd08386 C2A_Synaptotagmin-7 C2 99.8 1.2E-19 2.5E-24 136.0 12.0 104 158-263 2-113 (125)
67 cd04024 C2A_Synaptotagmin-like 99.8 1.3E-19 2.7E-24 136.4 12.1 112 54-167 1-128 (128)
68 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1.6E-19 3.5E-24 134.8 12.5 109 55-165 1-122 (123)
69 cd08406 C2B_Synaptotagmin-12 C 99.8 5.4E-20 1.2E-24 139.1 9.3 107 27-150 1-123 (136)
70 cd04031 C2A_RIM1alpha C2 domai 99.8 2.1E-19 4.6E-24 134.6 12.4 107 27-149 2-125 (125)
71 cd08521 C2A_SLP C2 domain firs 99.8 1.5E-19 3.3E-24 134.9 11.6 106 28-148 1-123 (123)
72 cd04010 C2B_RasA3 C2 domain se 99.8 1.2E-19 2.5E-24 139.0 11.1 109 55-165 1-147 (148)
73 KOG1030|consensus 99.8 7.3E-20 1.6E-24 138.6 9.5 85 53-139 5-97 (168)
74 cd08390 C2A_Synaptotagmin-15-1 99.8 1.7E-19 3.7E-24 134.7 11.4 108 28-150 1-123 (123)
75 cd08390 C2A_Synaptotagmin-15-1 99.8 2E-19 4.4E-24 134.3 11.6 104 159-264 1-112 (123)
76 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3.4E-19 7.3E-24 132.7 12.3 106 54-167 1-121 (121)
77 cd00276 C2B_Synaptotagmin C2 d 99.8 1.4E-19 3.1E-24 137.1 10.2 110 159-268 1-117 (134)
78 cd04015 C2_plant_PLD C2 domain 99.8 5.1E-19 1.1E-23 137.5 13.4 113 53-168 6-158 (158)
79 cd04009 C2B_Munc13-like C2 dom 99.8 4E-19 8.6E-24 134.5 12.3 106 158-263 2-118 (133)
80 cd08407 C2B_Synaptotagmin-13 C 99.8 1.2E-19 2.5E-24 137.3 8.9 104 28-148 2-123 (138)
81 cd04027 C2B_Munc13 C2 domain s 99.8 5.6E-19 1.2E-23 132.6 12.4 107 55-165 2-127 (127)
82 cd04010 C2B_RasA3 C2 domain se 99.8 2.8E-19 6.2E-24 136.9 10.9 94 171-264 1-110 (148)
83 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 7.3E-19 1.6E-23 137.1 12.7 120 28-150 2-138 (162)
84 KOG0696|consensus 99.8 5.5E-20 1.2E-24 157.0 6.9 109 155-263 165-277 (683)
85 cd04035 C2A_Rabphilin_Doc2 C2 99.8 8.3E-19 1.8E-23 131.0 12.3 110 158-267 1-117 (123)
86 cd04039 C2_PSD C2 domain prese 99.8 5E-19 1.1E-23 128.7 9.7 90 170-264 1-98 (108)
87 COG5038 Ca2+-dependent lipid-b 99.8 4.5E-18 9.8E-23 160.1 18.6 208 49-263 431-802 (1227)
88 cd08382 C2_Smurf-like C2 domai 99.8 1.3E-18 2.7E-23 129.9 12.0 107 56-165 2-122 (123)
89 cd08409 C2B_Synaptotagmin-15 C 99.8 4.5E-19 9.8E-24 134.7 9.7 107 27-149 1-123 (137)
90 cd04026 C2_PKC_alpha_gamma C2 99.8 1.7E-18 3.6E-23 130.8 12.6 106 158-263 1-110 (131)
91 cd04014 C2_PKC_epsilon C2 doma 99.8 2.3E-18 4.9E-23 130.2 12.9 106 53-168 3-129 (132)
92 cd04013 C2_SynGAP_like C2 doma 99.8 1.8E-18 3.8E-23 131.4 12.0 116 49-168 6-139 (146)
93 cd04041 C2A_fungal C2 domain f 99.8 6.7E-19 1.5E-23 129.0 9.4 96 170-267 1-103 (111)
94 cd04046 C2_Calpain C2 domain p 99.8 5.2E-18 1.1E-22 127.1 14.4 110 53-167 2-121 (126)
95 cd04016 C2_Tollip C2 domain pr 99.8 3.3E-18 7.3E-23 126.5 12.0 89 170-264 2-94 (121)
96 cd08402 C2B_Synaptotagmin-1 C2 99.8 1.1E-18 2.5E-23 132.5 9.3 108 27-151 1-124 (136)
97 cd04043 C2_Munc13_fungal C2 do 99.8 4.8E-18 1E-22 127.4 12.6 105 55-168 2-121 (126)
98 KOG1011|consensus 99.8 7.2E-18 1.6E-22 150.0 15.5 113 53-168 294-424 (1283)
99 cd04050 C2B_Synaptotagmin-like 99.8 3.1E-18 6.8E-23 124.2 10.2 91 56-151 2-103 (105)
100 cd04044 C2A_Tricalbin-like C2 99.8 7.3E-18 1.6E-22 126.0 12.4 110 54-168 2-123 (124)
101 cd08394 C2A_Munc13 C2 domain f 99.8 4.4E-18 9.6E-23 125.2 10.8 93 54-151 2-102 (127)
102 cd04041 C2A_fungal C2 domain f 99.8 2.1E-18 4.6E-23 126.4 9.1 91 54-149 1-107 (111)
103 cd08404 C2B_Synaptotagmin-4 C2 99.8 2.5E-18 5.5E-23 130.6 9.7 106 28-150 2-123 (136)
104 cd08682 C2_Rab11-FIP_classI C2 99.8 2.2E-18 4.8E-23 129.2 9.2 86 172-262 1-94 (126)
105 cd08405 C2B_Synaptotagmin-7 C2 99.8 2.4E-18 5.1E-23 130.8 9.0 107 27-150 1-123 (136)
106 cd08410 C2B_Synaptotagmin-17 C 99.8 2.9E-18 6.3E-23 130.0 9.3 108 28-151 1-124 (135)
107 KOG1030|consensus 99.8 1.7E-18 3.7E-23 131.1 7.9 89 169-263 5-96 (168)
108 cd08688 C2_KIAA0528-like C2 do 99.8 3.1E-18 6.7E-23 125.3 9.1 92 56-149 1-108 (110)
109 cd08384 C2B_Rabphilin_Doc2 C2 99.8 2.9E-18 6.2E-23 129.8 9.1 104 30-150 2-121 (133)
110 cd08375 C2_Intersectin C2 doma 99.8 5E-18 1.1E-22 128.6 10.0 90 169-263 14-106 (136)
111 cd04017 C2D_Ferlin C2 domain f 99.8 1.2E-17 2.7E-22 126.6 12.1 108 55-167 2-131 (135)
112 cd04039 C2_PSD C2 domain prese 99.8 6.8E-18 1.5E-22 122.8 9.9 84 54-139 1-98 (108)
113 cd08379 C2D_MCTP_PRT_plant C2 99.8 9.7E-18 2.1E-22 124.8 10.8 88 171-264 1-100 (126)
114 cd08373 C2A_Ferlin C2 domain f 99.8 1.9E-17 4E-22 124.4 12.3 106 60-168 2-116 (127)
115 cd08383 C2A_RasGAP C2 domain ( 99.8 1.6E-17 3.4E-22 122.9 11.8 106 56-167 2-117 (117)
116 cd08403 C2B_Synaptotagmin-3-5- 99.8 5.5E-18 1.2E-22 128.4 9.4 106 28-150 1-122 (134)
117 cd08690 C2_Freud-1 C2 domain f 99.8 2.9E-17 6.4E-22 126.0 13.4 109 56-168 4-137 (155)
118 cd08408 C2B_Synaptotagmin-14_1 99.8 4.7E-18 1E-22 129.0 9.0 106 28-149 2-124 (138)
119 cd08692 C2B_Tac2-N C2 domain s 99.7 1.4E-17 2.9E-22 124.4 10.7 104 29-148 2-121 (135)
120 cd04018 C2C_Ferlin C2 domain t 99.7 1.2E-17 2.5E-22 128.2 9.9 88 171-263 1-106 (151)
121 cd04032 C2_Perforin C2 domain 99.7 1.6E-17 3.4E-22 123.9 10.2 91 169-264 27-120 (127)
122 cd08376 C2B_MCTP_PRT C2 domain 99.7 2E-17 4.3E-22 122.2 10.7 88 172-264 2-92 (116)
123 cd08681 C2_fungal_Inn1p-like C 99.7 1.8E-17 3.9E-22 122.8 10.4 89 170-263 1-92 (118)
124 cd04035 C2A_Rabphilin_Doc2 C2 99.7 2.9E-17 6.3E-22 122.6 11.5 105 27-147 1-122 (123)
125 cd04009 C2B_Munc13-like C2 dom 99.7 2.4E-17 5.3E-22 124.7 11.1 97 26-137 1-117 (133)
126 cd04032 C2_Perforin C2 domain 99.7 3.1E-17 6.6E-22 122.3 10.9 88 48-137 22-118 (127)
127 cd04036 C2_cPLA2 C2 domain pre 99.7 2.4E-17 5.1E-22 122.4 10.2 92 172-265 2-95 (119)
128 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 3.5E-17 7.5E-22 122.2 11.1 88 171-263 1-91 (123)
129 cd08688 C2_KIAA0528-like C2 do 99.7 1.6E-17 3.5E-22 121.5 8.9 87 172-263 1-94 (110)
130 cd04050 C2B_Synaptotagmin-like 99.7 2.2E-17 4.7E-22 119.8 9.5 85 172-263 2-88 (105)
131 cd08394 C2A_Munc13 C2 domain f 99.7 4.6E-17 1E-21 119.9 11.2 86 169-263 1-87 (127)
132 KOG1028|consensus 99.7 2.6E-17 5.6E-22 146.3 11.6 109 155-265 150-265 (421)
133 cd08378 C2B_MCTP_PRT_plant C2 99.7 3.6E-17 7.8E-22 121.6 10.4 85 172-263 2-86 (121)
134 cd04049 C2_putative_Elicitor-r 99.7 4.2E-17 9E-22 122.0 10.7 97 54-152 1-110 (124)
135 cd04011 C2B_Ferlin C2 domain s 99.7 3.6E-17 7.8E-22 119.9 10.1 94 53-150 3-110 (111)
136 cd04018 C2C_Ferlin C2 domain t 99.7 2.8E-17 6E-22 126.1 9.9 96 55-152 1-127 (151)
137 cd04042 C2A_MCTP_PRT C2 domain 99.7 4.6E-17 9.9E-22 121.2 10.5 90 171-265 1-93 (121)
138 cd04022 C2A_MCTP_PRT_plant C2 99.7 2.8E-17 6E-22 123.4 9.1 87 171-262 1-94 (127)
139 cd00276 C2B_Synaptotagmin C2 d 99.7 3.2E-17 6.9E-22 124.2 9.2 107 28-151 1-123 (134)
140 cd04051 C2_SRC2_like C2 domain 99.7 4.4E-17 9.5E-22 122.0 9.7 105 55-163 1-125 (125)
141 cd04019 C2C_MCTP_PRT_plant C2 99.7 6.2E-17 1.4E-21 124.5 10.6 87 172-263 2-92 (150)
142 cd08377 C2C_MCTP_PRT C2 domain 99.7 7.1E-17 1.5E-21 119.8 10.3 93 170-268 1-96 (119)
143 cd04045 C2C_Tricalbin-like C2 99.7 7.4E-17 1.6E-21 119.7 10.3 96 54-152 1-105 (120)
144 cd04011 C2B_Ferlin C2 domain s 99.7 6.2E-17 1.3E-21 118.6 9.4 90 170-266 4-98 (111)
145 cd04040 C2D_Tricalbin-like C2 99.7 9.5E-17 2.1E-21 118.4 10.4 103 56-162 1-113 (115)
146 cd08691 C2_NEDL1-like C2 domai 99.7 2.5E-16 5.4E-21 119.0 12.6 108 55-165 2-136 (137)
147 cd04037 C2E_Ferlin C2 domain f 99.7 1.2E-16 2.6E-21 119.3 10.4 89 172-263 2-93 (124)
148 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.6E-16 3.4E-21 118.1 10.6 88 172-264 2-93 (121)
149 cd04024 C2A_Synaptotagmin-like 99.7 1.4E-16 3.1E-21 119.7 10.1 88 170-262 1-93 (128)
150 cd04038 C2_ArfGAP C2 domain pr 99.7 1.3E-16 2.8E-21 121.8 9.9 83 54-139 2-92 (145)
151 cd04026 C2_PKC_alpha_gamma C2 99.7 2.8E-16 6E-21 118.6 11.6 96 54-152 13-123 (131)
152 cd08400 C2_Ras_p21A1 C2 domain 99.7 2.9E-16 6.3E-21 117.6 11.4 90 170-265 4-94 (126)
153 cd08690 C2_Freud-1 C2 domain f 99.7 2.4E-16 5.2E-21 121.0 10.8 93 171-263 3-109 (155)
154 cd04038 C2_ArfGAP C2 domain pr 99.7 1.8E-16 3.9E-21 121.0 10.1 87 170-263 2-91 (145)
155 cd08676 C2A_Munc13-like C2 dom 99.7 3.4E-16 7.4E-21 120.3 10.9 93 49-148 23-153 (153)
156 cd08675 C2B_RasGAP C2 domain s 99.7 2.1E-16 4.5E-21 120.0 9.6 96 56-153 1-123 (137)
157 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3E-16 6.6E-21 116.7 10.3 89 170-263 1-97 (121)
158 cd04046 C2_Calpain C2 domain p 99.7 4.8E-16 1E-20 116.5 10.9 88 170-263 3-92 (126)
159 cd08678 C2_C21orf25-like C2 do 99.7 3.4E-16 7.4E-21 117.3 10.1 88 172-263 1-89 (126)
160 cd04021 C2_E3_ubiquitin_ligase 99.7 6E-16 1.3E-20 115.7 11.3 109 54-165 2-124 (125)
161 cd08686 C2_ABR C2 domain in th 99.7 4.9E-16 1.1E-20 113.0 10.3 83 172-259 1-91 (118)
162 KOG0696|consensus 99.7 3.3E-17 7.1E-22 140.2 4.4 93 53-148 179-286 (683)
163 cd08676 C2A_Munc13-like C2 dom 99.7 5.6E-16 1.2E-20 119.1 10.3 97 169-268 27-150 (153)
164 cd04048 C2A_Copine C2 domain f 99.7 5.5E-16 1.2E-20 115.2 9.7 90 175-264 5-103 (120)
165 cd04052 C2B_Tricalbin-like C2 99.7 7.3E-16 1.6E-20 112.9 10.1 92 70-168 9-109 (111)
166 cd04037 C2E_Ferlin C2 domain f 99.7 6.1E-16 1.3E-20 115.5 9.7 81 56-138 2-93 (124)
167 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1E-15 2.2E-20 115.8 11.0 92 172-264 2-98 (133)
168 cd04027 C2B_Munc13 C2 domain s 99.7 1E-15 2.2E-20 114.9 10.7 92 171-268 2-107 (127)
169 cd04043 C2_Munc13_fungal C2 do 99.7 1.5E-15 3.3E-20 113.8 11.4 90 171-262 2-94 (126)
170 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.3E-15 2.7E-20 113.4 10.4 87 172-263 2-91 (121)
171 cd04049 C2_putative_Elicitor-r 99.6 1.6E-15 3.6E-20 113.3 11.0 89 170-263 1-96 (124)
172 cd04015 C2_plant_PLD C2 domain 99.6 1.7E-15 3.7E-20 117.7 11.3 91 169-264 6-128 (158)
173 cd04048 C2A_Copine C2 domain f 99.6 6E-16 1.3E-20 115.0 8.4 88 63-151 8-115 (120)
174 cd08686 C2_ABR C2 domain in th 99.6 1E-15 2.3E-20 111.3 9.2 73 56-134 1-91 (118)
175 cd04045 C2C_Tricalbin-like C2 99.6 1.5E-15 3.2E-20 112.7 10.1 89 170-263 1-92 (120)
176 cd08675 C2B_RasGAP C2 domain s 99.6 2E-15 4.4E-20 114.6 10.8 91 172-263 1-108 (137)
177 cd08691 C2_NEDL1-like C2 domai 99.6 2.8E-15 6.1E-20 113.3 11.2 90 172-263 3-106 (137)
178 cd04044 C2A_Tricalbin-like C2 99.6 2.3E-15 5E-20 112.4 10.6 91 170-264 2-96 (124)
179 cd08382 C2_Smurf-like C2 domai 99.6 2.2E-15 4.9E-20 112.3 10.4 87 171-263 1-92 (123)
180 cd08373 C2A_Ferlin C2 domain f 99.6 2E-15 4.4E-20 113.3 9.8 84 176-264 2-88 (127)
181 PLN03008 Phospholipase D delta 99.6 3.8E-15 8.3E-20 138.4 13.4 95 72-168 75-177 (868)
182 cd00275 C2_PLC_like C2 domain 99.6 3.1E-15 6.6E-20 112.4 10.1 97 170-266 2-104 (128)
183 cd04017 C2D_Ferlin C2 domain f 99.6 4.2E-15 9.1E-20 112.7 10.8 82 170-256 1-94 (135)
184 cd04040 C2D_Tricalbin-like C2 99.6 3.8E-15 8.2E-20 109.8 9.6 89 172-264 1-92 (115)
185 cd00275 C2_PLC_like C2 domain 99.6 1.4E-14 3.1E-19 108.7 12.7 107 55-167 3-127 (128)
186 cd04014 C2_PKC_epsilon C2 doma 99.6 8.6E-15 1.9E-19 110.6 11.0 89 169-263 3-104 (132)
187 cd04051 C2_SRC2_like C2 domain 99.6 2.9E-15 6.4E-20 112.1 8.3 90 171-264 1-98 (125)
188 cd04047 C2B_Copine C2 domain s 99.6 1.3E-14 2.7E-19 106.2 10.5 91 173-264 3-101 (110)
189 cd08374 C2F_Ferlin C2 domain s 99.6 8.3E-15 1.8E-19 109.4 9.1 93 171-265 1-125 (133)
190 cd08383 C2A_RasGAP C2 domain ( 99.6 2.2E-14 4.7E-19 106.0 10.7 91 172-268 2-95 (117)
191 PF00168 C2: C2 domain; Inter 99.6 1.5E-14 3.3E-19 100.2 8.5 82 172-255 1-85 (85)
192 PLN03200 cellulose synthase-in 99.5 2.4E-14 5.3E-19 144.2 9.6 112 51-168 1977-2100(2102)
193 cd04021 C2_E3_ubiquitin_ligase 99.5 8.1E-14 1.8E-18 104.2 9.9 88 170-263 2-91 (125)
194 cd04047 C2B_Copine C2 domain s 99.5 3.7E-13 7.9E-18 98.4 8.5 74 63-138 8-100 (110)
195 PF00168 C2: C2 domain; Inter 99.4 3.1E-13 6.7E-18 93.5 7.3 73 56-130 1-85 (85)
196 KOG1326|consensus 99.4 2.8E-14 6.1E-19 132.6 1.2 89 172-263 615-706 (1105)
197 cd08374 C2F_Ferlin C2 domain s 99.4 9E-13 1.9E-17 98.5 8.5 83 55-139 1-124 (133)
198 smart00239 C2 Protein kinase C 99.4 3.5E-12 7.6E-17 90.7 10.6 94 172-267 2-98 (101)
199 PLN02952 phosphoinositide phos 99.4 2.9E-12 6.3E-17 117.1 12.4 143 17-167 427-598 (599)
200 cd04052 C2B_Tricalbin-like C2 99.4 9.7E-13 2.1E-17 96.3 7.5 74 185-262 9-82 (111)
201 PLN02223 phosphoinositide phos 99.4 3.8E-12 8.1E-17 114.1 12.4 142 18-167 368-536 (537)
202 PLN02223 phosphoinositide phos 99.4 2.4E-12 5.2E-17 115.4 10.5 98 170-267 409-514 (537)
203 PLN03200 cellulose synthase-in 99.4 9.6E-13 2.1E-17 133.0 7.8 91 169-263 1979-2070(2102)
204 KOG0905|consensus 99.4 1E-12 2.2E-17 124.0 7.2 110 155-264 1509-1624(1639)
205 PLN03008 Phospholipase D delta 99.4 4E-12 8.6E-17 118.6 10.6 73 188-265 76-148 (868)
206 cd00030 C2 C2 domain. The C2 d 99.3 7.9E-12 1.7E-16 88.5 9.3 91 56-148 1-102 (102)
207 KOG1326|consensus 99.3 4.6E-12 1E-16 118.1 9.8 221 40-264 599-970 (1105)
208 cd04013 C2_SynGAP_like C2 doma 99.3 1.3E-11 2.9E-16 93.8 10.0 87 170-264 11-102 (146)
209 PLN02222 phosphoinositide phos 99.3 2.5E-11 5.5E-16 110.6 12.3 143 17-167 409-580 (581)
210 PLN02270 phospholipase D alpha 99.3 3.8E-11 8.2E-16 112.0 13.2 113 53-168 7-148 (808)
211 PLN02230 phosphoinositide phos 99.3 2.4E-11 5.1E-16 111.0 11.4 143 17-167 426-597 (598)
212 smart00239 C2 Protein kinase C 99.3 2.5E-11 5.5E-16 86.2 9.2 82 56-139 2-95 (101)
213 KOG1327|consensus 99.3 2.7E-11 5.9E-16 107.8 11.2 179 79-262 41-235 (529)
214 KOG1264|consensus 99.3 1.2E-11 2.7E-16 113.1 8.9 114 20-138 1026-1162(1267)
215 PLN02230 phosphoinositide phos 99.3 2.2E-11 4.8E-16 111.2 10.2 97 170-266 469-574 (598)
216 PLN02952 phosphoinositide phos 99.3 2.7E-11 5.8E-16 110.8 10.6 98 170-267 470-576 (599)
217 PLN02228 Phosphoinositide phos 99.2 7.1E-11 1.5E-15 107.5 12.1 143 18-168 392-561 (567)
218 cd00030 C2 C2 domain. The C2 d 99.2 1.2E-10 2.5E-15 82.4 9.8 87 172-262 1-90 (102)
219 PLN02222 phosphoinositide phos 99.2 6.8E-11 1.5E-15 107.9 10.5 97 170-266 452-557 (581)
220 KOG0169|consensus 99.2 6.3E-11 1.4E-15 108.6 9.6 143 17-167 575-743 (746)
221 cd08684 C2A_Tac2-N C2 domain f 99.2 2.6E-11 5.7E-16 81.7 4.3 92 173-268 2-100 (103)
222 KOG1328|consensus 99.1 1.3E-11 2.8E-16 111.8 2.3 97 26-137 932-1048(1103)
223 PLN02228 Phosphoinositide phos 99.1 2.4E-10 5.2E-15 104.0 10.0 97 170-266 431-537 (567)
224 KOG1011|consensus 99.1 7E-11 1.5E-15 106.1 6.0 94 169-268 294-401 (1283)
225 KOG0169|consensus 99.1 1.3E-10 2.9E-15 106.5 7.7 97 171-267 617-721 (746)
226 KOG1264|consensus 99.1 8.4E-10 1.8E-14 101.4 10.6 96 169-264 1064-1163(1267)
227 cd08689 C2_fungal_Pkc1p C2 dom 99.0 1.9E-09 4.2E-14 76.0 6.6 76 56-138 1-88 (109)
228 KOG1031|consensus 98.9 2E-09 4.3E-14 95.9 7.0 109 54-166 3-134 (1169)
229 KOG2059|consensus 98.9 3E-09 6.4E-14 96.6 6.4 93 170-268 5-102 (800)
230 KOG1031|consensus 98.9 3.4E-09 7.3E-14 94.4 6.1 90 169-263 2-98 (1169)
231 cd08689 C2_fungal_Pkc1p C2 dom 98.9 1E-08 2.2E-13 72.3 7.0 81 172-261 1-86 (109)
232 PLN02270 phospholipase D alpha 98.7 6.1E-08 1.3E-12 91.0 9.7 91 169-264 7-118 (808)
233 KOG0905|consensus 98.7 2.6E-08 5.6E-13 95.0 5.9 97 53-151 1523-1636(1639)
234 cd08684 C2A_Tac2-N C2 domain f 98.6 3.2E-08 6.9E-13 67.0 2.8 86 57-147 2-102 (103)
235 PLN02352 phospholipase D epsil 98.6 3.5E-07 7.6E-12 85.7 10.2 106 53-168 9-130 (758)
236 KOG2060|consensus 98.5 8.9E-08 1.9E-12 81.4 4.5 183 79-264 146-367 (405)
237 cd08683 C2_C2cd3 C2 domain fou 98.5 2.7E-07 5.8E-12 67.3 5.7 92 56-148 1-143 (143)
238 KOG1013|consensus 98.5 1.9E-07 4.2E-12 78.2 5.4 77 53-131 232-324 (362)
239 cd08683 C2_C2cd3 C2 domain fou 98.1 5.1E-06 1.1E-10 60.7 5.5 91 172-263 1-132 (143)
240 PLN02964 phosphatidylserine de 98.0 7.2E-06 1.6E-10 76.4 5.6 83 50-139 50-140 (644)
241 PF12416 DUF3668: Cep120 prote 98.0 0.0011 2.3E-08 57.5 18.4 197 56-263 2-295 (340)
242 KOG3837|consensus 98.0 1.2E-05 2.7E-10 69.4 5.3 112 54-168 367-503 (523)
243 PLN02964 phosphatidylserine de 97.7 5.7E-05 1.2E-09 70.5 6.2 86 168-262 52-138 (644)
244 PLN02352 phospholipase D epsil 97.7 0.00011 2.5E-09 69.3 8.1 85 169-264 9-100 (758)
245 cd08693 C2_PI3K_class_I_beta_d 97.7 0.00041 8.8E-09 54.6 9.4 93 169-261 7-120 (173)
246 KOG2060|consensus 97.7 2.1E-05 4.6E-10 67.3 2.1 101 51-152 266-381 (405)
247 KOG1265|consensus 97.7 0.0001 2.2E-09 69.4 6.7 94 169-267 702-800 (1189)
248 cd08398 C2_PI3K_class_I_alpha 97.7 0.00049 1.1E-08 53.2 9.3 92 169-262 7-107 (158)
249 KOG1265|consensus 97.5 0.00012 2.5E-09 69.0 5.1 108 20-138 662-796 (1189)
250 cd08397 C2_PI3K_class_III C2 d 97.5 0.00082 1.8E-08 52.1 8.2 76 186-261 27-107 (159)
251 cd08380 C2_PI3K_like C2 domain 97.4 0.0013 2.7E-08 51.0 8.7 93 170-262 8-108 (156)
252 PF15627 CEP76-C2: CEP76 C2 do 97.3 0.005 1.1E-07 47.1 10.7 116 50-167 5-149 (156)
253 KOG3837|consensus 97.1 0.00035 7.6E-09 60.7 2.9 95 169-263 366-475 (523)
254 cd08399 C2_PI3K_class_I_gamma 97.1 0.0074 1.6E-07 47.5 9.9 93 169-261 9-122 (178)
255 KOG1327|consensus 97.0 0.0024 5.1E-08 57.9 7.5 79 58-138 139-236 (529)
256 cd08398 C2_PI3K_class_I_alpha 96.8 0.007 1.5E-07 46.8 7.8 81 54-137 8-107 (158)
257 PF00792 PI3K_C2: Phosphoinosi 96.8 0.0046 9.9E-08 47.0 6.7 72 190-261 3-85 (142)
258 cd08693 C2_PI3K_class_I_beta_d 96.7 0.0087 1.9E-07 47.1 7.8 81 54-136 8-120 (173)
259 cd04012 C2A_PI3K_class_II C2 d 96.6 0.015 3.2E-07 45.7 8.5 92 170-261 8-119 (171)
260 cd08380 C2_PI3K_like C2 domain 96.6 0.011 2.3E-07 45.8 7.2 82 54-137 8-108 (156)
261 KOG1452|consensus 96.4 0.0075 1.6E-07 50.9 5.4 72 51-125 48-130 (442)
262 PF15627 CEP76-C2: CEP76 C2 do 96.3 0.028 6.1E-07 43.1 7.8 91 170-263 9-117 (156)
263 cd08397 C2_PI3K_class_III C2 d 96.2 0.019 4E-07 44.5 6.3 54 82-136 50-107 (159)
264 smart00142 PI3K_C2 Phosphoinos 96.2 0.061 1.3E-06 38.2 8.6 73 172-244 13-91 (100)
265 cd08694 C2_Dock-A C2 domains f 96.0 0.056 1.2E-06 43.0 8.5 56 79-134 53-114 (196)
266 PF14429 DOCK-C2: C2 domain in 95.9 0.027 5.8E-07 44.8 6.5 56 80-135 60-120 (184)
267 PF12416 DUF3668: Cep120 prote 95.8 0.045 9.8E-07 47.6 7.6 84 172-261 2-94 (340)
268 cd04012 C2A_PI3K_class_II C2 d 95.5 0.054 1.2E-06 42.5 6.8 82 53-136 7-119 (171)
269 cd08695 C2_Dock-B C2 domains f 95.1 0.057 1.2E-06 42.9 5.7 55 79-134 53-112 (189)
270 cd08695 C2_Dock-B C2 domains f 95.1 0.083 1.8E-06 42.0 6.3 57 204-260 52-113 (189)
271 PF10358 NT-C2: N-terminal C2 94.9 0.37 8.1E-06 36.3 9.6 107 54-167 7-134 (143)
272 cd08679 C2_DOCK180_related C2 94.9 0.26 5.6E-06 39.0 8.9 55 79-135 53-115 (178)
273 cd08399 C2_PI3K_class_I_gamma 94.5 0.2 4.4E-06 39.5 7.2 36 82-117 49-88 (178)
274 cd08694 C2_Dock-A C2 domains f 94.3 0.17 3.6E-06 40.4 6.4 56 204-259 52-114 (196)
275 cd08687 C2_PKN-like C2 domain 94.3 0.45 9.8E-06 32.9 7.6 72 79-167 21-92 (98)
276 PF14429 DOCK-C2: C2 domain in 94.2 0.15 3.3E-06 40.5 6.2 57 204-260 58-120 (184)
277 cd08696 C2_Dock-C C2 domains f 94.0 0.19 4.1E-06 39.7 6.2 56 79-135 54-118 (179)
278 PF11618 DUF3250: Protein of u 93.9 0.28 6E-06 35.3 6.4 84 79-167 11-104 (107)
279 cd08697 C2_Dock-D C2 domains f 93.7 0.29 6.3E-06 38.8 6.6 56 79-135 56-123 (185)
280 PF00792 PI3K_C2: Phosphoinosi 93.4 0.19 4.1E-06 38.1 5.2 57 80-137 21-86 (142)
281 PF10358 NT-C2: N-terminal C2 93.2 0.5 1.1E-05 35.6 7.2 89 171-263 8-106 (143)
282 smart00142 PI3K_C2 Phosphoinos 92.8 0.44 9.6E-06 33.7 6.0 61 56-117 13-91 (100)
283 cd08697 C2_Dock-D C2 domains f 92.3 1.1 2.3E-05 35.6 8.1 57 204-260 55-123 (185)
284 cd08696 C2_Dock-C C2 domains f 91.1 1.7 3.7E-05 34.3 8.0 57 204-260 53-118 (179)
285 KOG4269|consensus 90.7 0.13 2.9E-06 49.3 1.7 91 17-117 727-828 (1112)
286 cd08679 C2_DOCK180_related C2 90.5 0.84 1.8E-05 36.0 5.9 54 206-260 54-115 (178)
287 PF14186 Aida_C2: Cytoskeletal 85.2 2.7 5.9E-05 32.0 5.4 93 171-264 14-115 (147)
288 PF07162 B9-C2: Ciliary basal 84.5 8.1 0.00018 30.1 8.1 53 80-133 40-101 (168)
289 KOG0694|consensus 83.8 0.45 9.7E-06 44.7 0.8 81 79-168 40-121 (694)
290 PF15625 CC2D2AN-C2: CC2D2A N- 82.9 9.5 0.0002 29.8 7.9 69 189-263 37-108 (168)
291 KOG0904|consensus 81.9 3.2 6.9E-05 40.4 5.6 75 169-243 342-421 (1076)
292 cd05137 RasGAP_CLA2_BUD2 CLA2/ 77.3 3.4 7.5E-05 37.0 4.1 43 125-168 1-44 (395)
293 PF15625 CC2D2AN-C2: CC2D2A N- 75.9 8.8 0.00019 30.0 5.7 57 79-137 49-107 (168)
294 PF07162 B9-C2: Ciliary basal 74.1 39 0.00085 26.2 9.5 81 174-258 6-101 (168)
295 KOG1452|consensus 73.6 15 0.00032 31.6 6.6 78 163-246 44-125 (442)
296 cd08687 C2_PKN-like C2 domain 70.6 26 0.00057 24.4 6.2 50 189-245 9-58 (98)
297 KOG1329|consensus 70.5 5.5 0.00012 38.9 3.9 79 74-153 138-224 (887)
298 PF11618 DUF3250: Protein of u 70.1 5.5 0.00012 28.6 3.0 58 204-262 10-74 (107)
299 KOG0906|consensus 66.8 7.7 0.00017 36.6 3.9 73 189-261 47-124 (843)
300 KOG2419|consensus 65.9 0.58 1.3E-05 43.6 -3.3 137 79-244 316-462 (975)
301 KOG4027|consensus 65.6 25 0.00054 27.0 5.8 45 89-134 60-109 (187)
302 KOG4027|consensus 60.1 65 0.0014 24.8 7.1 72 189-260 26-110 (187)
303 KOG0904|consensus 53.0 24 0.00053 34.7 4.7 61 54-116 343-421 (1076)
304 PF10409 PTEN_C2: C2 domain of 50.6 98 0.0021 22.7 7.9 84 171-259 5-95 (134)
305 KOG3508|consensus 41.6 12 0.00026 36.9 1.0 113 36-152 84-205 (932)
306 PF14186 Aida_C2: Cytoskeletal 34.0 2.1E+02 0.0046 21.8 6.5 88 50-139 9-115 (147)
307 PF01060 DUF290: Transthyretin 31.3 1E+02 0.0022 20.5 4.0 25 233-257 11-36 (80)
308 PF15084 DUF4550: Domain of un 28.3 38 0.00083 23.8 1.5 29 89-117 49-83 (99)
309 KOG3543|consensus 24.3 5.2E+02 0.011 25.0 8.2 89 55-149 342-440 (1218)
310 KOG0694|consensus 22.4 65 0.0014 30.9 2.2 50 189-244 28-77 (694)
311 KOG2419|consensus 22.1 17 0.00038 34.3 -1.5 71 170-246 280-357 (975)
312 PTZ00447 apical membrane antig 20.8 6E+02 0.013 22.6 9.5 68 94-166 102-171 (508)
313 PF14924 DUF4497: Protein of u 20.7 3.2E+02 0.007 19.4 6.1 61 106-168 28-104 (112)
No 1
>KOG1028|consensus
Probab=100.00 E-value=1.7e-40 Score=293.71 Aligned_cols=231 Identities=24% Similarity=0.374 Sum_probs=207.7
Q ss_pred cccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCC
Q psy3954 23 ATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTS 91 (268)
Q Consensus 23 ~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~n 91 (268)
....+|.++.++.|..+ ...|.|+|+ +|++|+ +..|.+| ||+ .+.+|++.++|+|
T Consensus 149 ~~~~~G~l~fsl~Yd~~-------------~~~L~V~V~-qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tln 214 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDFE-------------LNLLTVRVI-QAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLN 214 (421)
T ss_pred cceeeeeEEEEEEeccc-------------CCEEEEEEE-EecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcC
Confidence 45788999999999998 899999999 999999 7677899 999 6889999999999
Q ss_pred CccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcc-cceEEEEEEEE
Q psy3954 92 PFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSE-VQGKIQIGVLS 167 (268)
Q Consensus 92 P~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~v~l~~ 167 (268)
|+|||+|.|.|+.. ...|.|.|||.| .++++++||++.++|..+........|.+|.+...... ..|+|.++++|
T Consensus 215 P~fnEtf~f~v~~~~l~~~~L~l~V~~~d-rfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y 293 (421)
T KOG1028|consen 215 PVFNETFRFEVPYEELSNRVLHLSVYDFD-RFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCY 293 (421)
T ss_pred CccccceEeecCHHHhccCEEEEEEEecC-CcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEe
Confidence 99999999997776 789999999999 79999999999999999987777889999988654422 23799999999
Q ss_pred c--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEE
Q psy3954 168 T--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLH 241 (268)
Q Consensus 168 ~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~ 241 (268)
. .++|+|.|++|++|+ +..+.+||||++++..+..+..+++|.+++++.||+|||+|.|.++...+++ |.|+||
T Consensus 294 ~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~ 373 (421)
T KOG1028|consen 294 LPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVW 373 (421)
T ss_pred ecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEE
Confidence 9 799999999999997 6677799999999997777788999999999999999999999999988888 999999
Q ss_pred ecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 242 HDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 242 d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
|++.+ ++++||++.++..+-..+..||
T Consensus 374 d~d~~~~~~~iG~~~lG~~~~~~~~~hW 401 (421)
T KOG1028|consen 374 DHDTLGSNDLIGRCILGSDSTGEEVRHW 401 (421)
T ss_pred EcccccccceeeEEEecCCCCchHHHHH
Confidence 99999 8889999999998855555555
No 2
>KOG2059|consensus
Probab=99.97 E-value=9e-32 Score=239.40 Aligned_cols=207 Identities=41% Similarity=0.686 Sum_probs=185.2
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCC
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTD 123 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d 123 (268)
...|.|+|. +|+||| +..|+.| ||. +..||.++.+++.|.|.|+|.|.+|...+.|.|.|||.| +++|
T Consensus 4 ~~sl~vki~-E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d--~~~D 80 (800)
T KOG2059|consen 4 EQSLKVKIG-EAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD--LKRD 80 (800)
T ss_pred ccceeEEEe-ecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc--cccc
Confidence 568999999 999999 8899999 999 789999999999999999999999999999999999999 8899
Q ss_pred ceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc----CCeEEEEEceecCC-CCCCCCCCCEEEEEEE
Q psy3954 124 RVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST----PTSLMVNVNEASGL-TQVNGQCDPTAMVTVH 198 (268)
Q Consensus 124 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~----~~~L~v~v~~a~~L-~~~~g~~dpyv~v~l~ 198 (268)
+.||++.|.-+++...++.+.|+.|++.+++.+++|+|++++.+. ...+...++++|++ |-.++.+|||+.+.+.
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~ 160 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLC 160 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeec
Confidence 999999999999998889999999999999999999999999987 66677888888877 5566779999999997
Q ss_pred ecCCcceeeeceeccCCCCCccceEEEEEccCC---------------CCceEEEEEEe-cCCC-CCeeeEEEEEeCCcc
Q psy3954 199 YTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG---------------DPIELVVSLHH-DISG-LNVFLGEVHIPLNNK 261 (268)
Q Consensus 199 ~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~---------------~~~~l~i~V~d-~~~~-~~~~lG~~~l~l~~~ 261 (268)
++.+....+|++++++.+|.|+|.|.|.+..+ +.-.|.+++|+ ++.. ++.|+|++.+++...
T Consensus 161 -g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~ 239 (800)
T KOG2059|consen 161 -GPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVL 239 (800)
T ss_pred -ccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhh
Confidence 55555568999999999999999999998654 33349999999 4455 899999999999887
Q ss_pred CC
Q psy3954 262 ET 263 (268)
Q Consensus 262 ~~ 263 (268)
..
T Consensus 240 ~~ 241 (800)
T KOG2059|consen 240 RQ 241 (800)
T ss_pred hh
Confidence 63
No 3
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.94 E-value=8.7e-27 Score=169.73 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=97.3
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE- 235 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~- 235 (268)
|+|++++.|. .+.|+|+|++|+||+ ..|.+||||++++.++.+ ..+++|+++++|+||+|||+|.|.++.+++..
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 5799999998 899999999999999 567799999999985433 45779999999999999999999999988887
Q ss_pred -EEEEEEecCCC-CCeeeEEEEEeCCcc--CCCCCCC
Q psy3954 236 -LVVSLHHDISG-LNVFLGEVHIPLNNK--ETSSSWW 268 (268)
Q Consensus 236 -l~i~V~d~~~~-~~~~lG~~~l~l~~~--~~~~~~w 268 (268)
|.|+|||+|++ ++++||++.++++++ ..+..||
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W 115 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW 115 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence 99999999999 999999999999976 6688888
No 4
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.93 E-value=2.3e-25 Score=168.32 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=99.8
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCCCC----CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLTQV----NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG 231 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~~~----~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~ 231 (268)
.|+|.+++.|. .++|.|.|++|+||+.. .+.+||||++++.++..+..++||+++++++||+|||+|.|.++..
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 39999999996 99999999999999732 2559999999999766666789999999999999999999999988
Q ss_pred CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
++++ |.|+|||++.+ ++++||++.+++.+.+.+..||
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW 120 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHW 120 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHH
Confidence 8877 99999999998 9999999999999987787777
No 5
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.92 E-value=1.2e-24 Score=164.48 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=99.1
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~ 234 (268)
|+|.+++.|. .++|.|.|++|+||+ +..|.+||||++++.+++.+..++||+++++++||+|||+|.|.++..++.
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~ 81 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ 81 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence 9999999998 789999999999997 556789999999998766656678999999999999999999999887776
Q ss_pred e--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
+ |.|+|||++.. ++++||++.|+..+.+.+..||
T Consensus 82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW 118 (136)
T cd08406 82 DLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHW 118 (136)
T ss_pred CcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHH
Confidence 6 99999999988 9999999999998888777777
No 6
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.91 E-value=7.3e-24 Score=157.81 Aligned_cols=106 Identities=30% Similarity=0.415 Sum_probs=94.7
Q ss_pred ceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEc-cCCCCc
Q psy3954 158 QGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR-SLGDPI 234 (268)
Q Consensus 158 ~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v-~~~~~~ 234 (268)
.|+|.+++.|..+.|.|.|++|+||+ + .+.+||||++++.+++.+..+++|++++++.||+|||+|.|.+ +..++.
T Consensus 1 ~G~l~~~l~y~~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~ 79 (122)
T cd08381 1 GGQVKLSISYKNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ 79 (122)
T ss_pred CCeEEEEEEEeCCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence 38999999999999999999999997 5 6779999999998666556789999999999999999999997 555555
Q ss_pred e--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
. |.|+|||++.+ ++++||++.|+|+++..+
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~ 112 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLS 112 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccC
Confidence 4 99999999988 899999999999999774
No 7
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.90 E-value=3.8e-23 Score=152.87 Aligned_cols=111 Identities=15% Similarity=0.298 Sum_probs=96.7
Q ss_pred eEEEEEEEcccCccc-cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954 54 GTLRIRIQYTADHIL-QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~-~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~ 125 (268)
|.|.|+|+ +|++|+ ...|.+| ||+ +++||+++.+ +.||+|||+|.|.++.....|.|+|||+| .+++|++
T Consensus 2 g~L~v~v~-~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d-~~~~dd~ 79 (121)
T cd04016 2 GRLSITVV-QAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDER-AFTMDER 79 (121)
T ss_pred cEEEEEEE-EccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCC-CCcCCce
Confidence 68999999 999998 3368999 998 7789999876 79999999999999877678999999999 8999999
Q ss_pred eEEEEEecc-ccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 126 LGKVTIQRS-DLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 126 iG~~~i~l~-~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
||++.+++. .+..++..+.|++|.+... ....|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~-~~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLDDWYSLSGKQG-EDKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCccccEeCcCccC-CCCceEEEEEEeC
Confidence 999999996 5666777899999987553 3457999999987
No 8
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.90 E-value=3.7e-23 Score=154.26 Aligned_cols=109 Identities=18% Similarity=0.230 Sum_probs=95.1
Q ss_pred EEEEEEEEc--CCeEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCC-CCccceEEEEEccCCCCc
Q psy3954 160 KIQIGVLST--PTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSH-SPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 160 ~i~v~l~~~--~~~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~-nP~~ne~f~f~v~~~~~~ 234 (268)
+|+++++|. .++|+|.|++|+||+. ..+.+||||||.+.+++++..++||+++++++ +|+|||+|.|+++.+..+
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~ 81 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG 81 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence 789999999 9999999999999974 34557999999999888878899999999995 699999999999986554
Q ss_pred e-EEEEEEecCCC-CCeeeEEEEEeCCccCC-CCCCC
Q psy3954 235 E-LVVSLHHDISG-LNVFLGEVHIPLNNKET-SSSWW 268 (268)
Q Consensus 235 ~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~-~~~~w 268 (268)
- |.|+|||++.. ++++||++.|+.++... +..||
T Consensus 82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW 118 (135)
T cd08692 82 IQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQW 118 (135)
T ss_pred eEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhH
Confidence 3 99999999988 99999999999988554 57777
No 9
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.90 E-value=3.6e-23 Score=154.90 Aligned_cols=107 Identities=29% Similarity=0.355 Sum_probs=94.0
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD 232 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~ 232 (268)
+|+|++++.|. .+.|.|+|++|+||+ +.. |.+||||++++.+++....+++|+++++++||+|||+|.|.++..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 59999999999 569999999999997 333 6799999999986655456789999999999999999999998766
Q ss_pred Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
+.. |.|+|||++.+ ++++||++.++|.++..+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~ 115 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS 115 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccC
Confidence 664 99999999988 899999999999998663
No 10
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.90 E-value=5.4e-23 Score=154.16 Aligned_cols=106 Identities=27% Similarity=0.412 Sum_probs=94.6
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD 232 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~ 232 (268)
.|+|.+++.|. .+.|.|.|++|+||+ +.. |.+||||++++.++.....++||++++++.||+|||+|.|.++..+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 49999999999 689999999999997 333 7899999999987665566889999999999999999999998777
Q ss_pred Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
+.. |.++|||++.+ ++++||++.|+|+++..
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence 665 99999999988 99999999999999865
No 11
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.90 E-value=3.1e-23 Score=151.08 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=93.9
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccccCCCCCC-ceE---------EEeeecccCCCCCCccCcE
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYED-LCT---------QILNSPSVNPVTSPFFGEE 97 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~---------~~~~T~~~~~t~nP~wne~ 97 (268)
+.++.++.|... .+.|.|+|+ +|++|+ ..|.+| ||+ .+.+|+++++|+||+|||+
T Consensus 1 ~~l~fsL~Y~~~-------------~~~L~V~vi-kA~~L~-~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~ 65 (118)
T cd08677 1 PKLHYSLSYDKQ-------------KAELHVNIL-EAENIS-VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEE 65 (118)
T ss_pred CeEEEEEEEcCc-------------CCEEEEEEE-EecCCC-CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccE
Confidence 367888899988 899999999 999999 456699 999 4778999999999999999
Q ss_pred EEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954 98 FQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 98 f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
|.|.++.+ ...|.|.|||+| .++++++||++.++++++....+.++|.+|
T Consensus 66 f~F~v~~~~l~~~tL~~~V~d~D-rfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 66 LVFPLPEEESLDGTLTLTLRCCD-RFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEeCCHHHhCCcEEEEEEEeCC-CCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999887 678999999999 799999999999999998777778888764
No 12
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.89 E-value=1.2e-22 Score=151.14 Aligned_cols=104 Identities=23% Similarity=0.283 Sum_probs=93.1
Q ss_pred EEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954 160 KIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 160 ~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~ 234 (268)
+|++++.|. .+.|.|+|++|+||+ +..|.+||||++++.++..+ ..+++|++++++.||+|||+|.|+++.+++.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 688999997 789999999999997 45677999999999966554 3588999999999999999999999988888
Q ss_pred e--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
. |.|+|||++.. ++++||++.|+|+++..
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 6 99999999988 89999999999999855
No 13
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.89 E-value=2e-22 Score=153.42 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=92.2
Q ss_pred cceEEEEEEEEcCCeEEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 157 VQGKIQIGVLSTPTSLMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 157 ~~G~i~v~l~~~~~~L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
..|+|++++.|..+.|.|.|++|+||+. ..|.+||||++++.+++++..++||+++++++||+|||+|.|.+. ..-
T Consensus 16 ~~G~l~lsl~y~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~ 94 (146)
T cd04028 16 SMGDIQLGLYDKKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTG 94 (146)
T ss_pred CcceEEEEEEeCCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCC
Confidence 4799999999999999999999999963 457799999999986655566899999999999999999999987 222
Q ss_pred ceEEEEEE-ecCCC-CCeeeEEEEEeCCccCC
Q psy3954 234 IELVVSLH-HDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 234 ~~l~i~V~-d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
..|.|+|| |++.+ ++++||++.|+|+++..
T Consensus 95 ~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~ 126 (146)
T cd04028 95 KTLQVIVWGDYGRMDKKVFMGVAQILLDDLDL 126 (146)
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEEcccccC
Confidence 23999999 57777 89999999999999865
No 14
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.89 E-value=1.5e-22 Score=149.89 Aligned_cols=107 Identities=22% Similarity=0.372 Sum_probs=93.8
Q ss_pred eEEEEEEEEcCCeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-E
Q psy3954 159 GKIQIGVLSTPTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-L 236 (268)
Q Consensus 159 G~i~v~l~~~~~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l 236 (268)
|+|.+++.|..+.|.|+|++|+||+.. .|.+||||++++.+++.+..+++|++++++.||+|||+|.|.++..++.. |
T Consensus 1 G~l~l~~~~~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l 80 (119)
T cd08685 1 GQLKLSIEGQNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRL 80 (119)
T ss_pred CEEEEEEEEcCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEE
Confidence 889999999999999999999999632 67799999999997665566789999999999999999999998766655 8
Q ss_pred EEEEEecCCC--CCeeeEEEEEeCCccCCCC
Q psy3954 237 VVSLHHDISG--LNVFLGEVHIPLNNKETSS 265 (268)
Q Consensus 237 ~i~V~d~~~~--~~~~lG~~~l~l~~~~~~~ 265 (268)
.|+|||++.. ++++||++.|++.++..+.
T Consensus 81 ~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~ 111 (119)
T cd08685 81 LVTVWNKLSKSRDSGLLGCMSFGVKSIVNQK 111 (119)
T ss_pred EEEEECCCCCcCCCEEEEEEEecHHHhccCc
Confidence 9999999877 4799999999999997643
No 15
>KOG1328|consensus
Probab=99.89 E-value=6.8e-24 Score=189.64 Aligned_cols=95 Identities=26% Similarity=0.342 Sum_probs=82.5
Q ss_pred CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC--cceeeeceeccCCCCCccceEEEEEccCCCCce----EEEEE
Q psy3954 169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN--KSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE----LVVSL 240 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~--~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~----l~i~V 240 (268)
...|.|.|+.|+++. |.+|.+||||.|.+.+... ....++|.|+++|+||+|+|+|+|.|+.+.... |.|+|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 667889999999994 8999999999999984333 245789999999999999999999998765542 99999
Q ss_pred EecCCC-CCeeeEEEEEeCCccCC
Q psy3954 241 HHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 241 ~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
+|+|-. .|+|-|++.+.|.++..
T Consensus 1026 MDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eccceecccccchHHHHhhCCCCC
Confidence 999999 99999999999988865
No 16
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.89 E-value=2.8e-22 Score=149.90 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=94.2
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD 232 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~ 232 (268)
.|+|++++.|. .+.|.|.|++|+||+ +. .|.+||||++++.+++.+..++||++++++.||+|||+|.|.++..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 39999999996 889999999999997 33 46799999999986555556789999999999999999999998766
Q ss_pred Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
+.. |.|+|||++.. ++++||++.+++.++...
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~ 115 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFD 115 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCccccc
Confidence 654 99999999988 999999999999999764
No 17
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.88 E-value=3.2e-22 Score=148.75 Aligned_cols=110 Identities=46% Similarity=0.914 Sum_probs=97.8
Q ss_pred EEEEEEcccCccc---cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954 56 LRIRIQYTADHIL---QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 56 L~V~v~~~a~~L~---~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~ 125 (268)
|.|+|+ +|+||+ +..|.+| ||+ ..++|+++++|+||+|||+|.|.++.....|.|.|||++ ..++|++
T Consensus 2 l~v~v~-~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~-~~~~~~~ 79 (121)
T cd08401 2 LKIKIG-EAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRD-VLRRDSV 79 (121)
T ss_pred eEEEEE-EccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECC-CCCCCce
Confidence 789999 999999 2357889 999 468999999999999999999999876789999999999 7889999
Q ss_pred eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
||++.++++++......+.|++|++........|+|++++.+
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 999999999998777789999999876666678999998764
No 18
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.88 E-value=6.2e-22 Score=148.55 Aligned_cols=108 Identities=23% Similarity=0.441 Sum_probs=93.7
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC------CCcEEEEEEEeCCCCCC
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR------RFRHLAVYAYDRDRTSK 121 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~------~~~~l~~~v~d~d~~~~ 121 (268)
++|+|+ +|+||+ +..|.+| ||+ .++||+++++++||+|||+|.|.++. ....|.|+|||++ .++
T Consensus 1 ~~V~V~-~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~-~~~ 78 (126)
T cd08682 1 VQVTVL-QARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN-LLG 78 (126)
T ss_pred CEEEEE-ECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc-ccC
Confidence 479999 999999 7788999 999 78899999999999999999999877 3688999999999 788
Q ss_pred CCceeEEEEEeccccc--cccCccceecCcccC-CCcccceEEEEEE
Q psy3954 122 TDRVLGKVTIQRSDLH--RISNKEHWFPLTPVT-QDSEVQGKIQIGV 165 (268)
Q Consensus 122 ~d~~iG~~~i~l~~l~--~~~~~~~w~~L~~~~-~~~~~~G~i~v~l 165 (268)
+|++||++.++++++. .+.....|++|.+.. ......|+|++++
T Consensus 79 ~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 79 LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 8999999999999987 455678999998543 2344689999886
No 19
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.88 E-value=3.6e-22 Score=151.64 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=96.1
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC-cceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
|+|.+++.|. .++|.|+|++|+||+ +..|.+||||++++.++.+ ...++||++++++.||+|||+|.|+++..++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 7899999998 699999999999997 5677899999999985433 3457899999999999999999999988777
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCC-CCCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKET-SSSWW 268 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~-~~~~w 268 (268)
.. |.|+|||++.+ ++++||++.+++...+. +..||
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW 120 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHW 120 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHH
Confidence 75 99999999988 99999999999998875 44666
No 20
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.87 E-value=1.4e-21 Score=148.78 Aligned_cols=112 Identities=14% Similarity=0.223 Sum_probs=98.2
Q ss_pred ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc---cCCCCCC-ceE----------EEeeecccCCCCC
Q psy3954 26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL---QPHYYED-LCT----------QILNSPSVNPVTS 91 (268)
Q Consensus 26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~---~~~~~~d-yv~----------~~~~T~~~~~t~n 91 (268)
.+|.+..++.| + .+.|.|+|+ +|+||+ +..|.+| ||+ .+.||+++++|+|
T Consensus 16 ~~G~l~lsl~y--~-------------~~~L~V~Vi-~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktln 79 (146)
T cd04028 16 SMGDIQLGLYD--K-------------KGQLEVEVI-RARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLD 79 (146)
T ss_pred CcceEEEEEEe--C-------------CCEEEEEEE-EeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCC
Confidence 57899999888 3 478999999 999998 3567899 999 3789999999999
Q ss_pred CccCcEEEEEecCCCcEEEEEEE-eCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC
Q psy3954 92 PFFGEEFQFDIPRRFRHLAVYAY-DRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD 154 (268)
Q Consensus 92 P~wne~f~f~v~~~~~~l~~~v~-d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 154 (268)
|+|||+|.|.++.....|.|+|| |.+ .++++++||++.|+|+++........|++|.+....
T Consensus 80 PvfNE~F~f~v~l~~~~L~v~V~~d~~-~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 80 PLYQQQLVFDVSPTGKTLQVIVWGDYG-RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred CccCCeEEEEEcCCCCEEEEEEEeCCC-CCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 99999999999866889999999 577 788899999999999999877778899999876543
No 21
>KOG1013|consensus
Probab=99.87 E-value=4.8e-23 Score=169.85 Aligned_cols=215 Identities=19% Similarity=0.252 Sum_probs=177.9
Q ss_pred CCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEE-ecCC---CcEEEEEE
Q psy3954 51 QDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFD-IPRR---FRHLAVYA 113 (268)
Q Consensus 51 ~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~l~~~v 113 (268)
.....+..+|. .|.+|. +.++..| |++ .+.||++..+++||.|||.-.+. +..+ ...+++.|
T Consensus 90 ~~~~~~~~tl~-~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~v 168 (362)
T KOG1013|consen 90 SESRMLDTTLD-RAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVV 168 (362)
T ss_pred hhhhhcceeec-hhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheee
Confidence 33677899999 999998 8899999 998 66899999999999999877766 3333 56789999
Q ss_pred EeCCCCCCCCceeEEEEEeccccccccCc--cceecCccc----C-CCcccceEEEEEEEEc--CCeEEEEEceecCCC-
Q psy3954 114 YDRDRTSKTDRVLGKVTIQRSDLHRISNK--EHWFPLTPV----T-QDSEVQGKIQIGVLST--PTSLMVNVNEASGLT- 183 (268)
Q Consensus 114 ~d~d~~~~~d~~iG~~~i~l~~l~~~~~~--~~w~~L~~~----~-~~~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~- 183 (268)
+|.+ .+..++++|+..+++..+...+.. ..|+.-..+ + ..-+.+|+|.+++.|. ...+.|++++|+.|.
T Consensus 169 cdn~-~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~s 247 (362)
T KOG1013|consen 169 CDND-KKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLAS 247 (362)
T ss_pred ccCc-ccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeeec
Confidence 9999 788899999999999888755432 344433222 1 1236789999999998 788999999999996
Q ss_pred -CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-CCeeeEEEEEeCC
Q psy3954 184 -QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-LNVFLGEVHIPLN 259 (268)
Q Consensus 184 -~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~ 259 (268)
|.+|.+||||+.++..+..+..++||.+.+++++|+||+.|.|.+...++.. +.|+|||++.. .++++|.+..+..
T Consensus 248 sDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 248 SDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 7899999999999996666777899999999999999999999999988876 99999999999 9999999888776
Q ss_pred ccCCCCCC
Q psy3954 260 NKETSSSW 267 (268)
Q Consensus 260 ~~~~~~~~ 267 (268)
....-.-|
T Consensus 328 rr~~v~~h 335 (362)
T KOG1013|consen 328 RRGEVHKH 335 (362)
T ss_pred ccchhhcC
Confidence 66553333
No 22
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.87 E-value=1.3e-21 Score=146.44 Aligned_cols=107 Identities=19% Similarity=0.380 Sum_probs=94.9
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCC-CCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPH-YYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~-~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
|.+..+++|... .+.|.|+|+ +|+||+ +.. |.+| ||+ .++||+++++++||+
T Consensus 2 G~i~~sl~y~~~-------------~~~L~V~vi-~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~ 67 (125)
T cd08393 2 GSVQFALDYDPK-------------LRELHVHVI-QCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPV 67 (125)
T ss_pred cEEEEEEEEECC-------------CCEEEEEEE-EeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCc
Confidence 678888888876 789999999 999999 554 7899 998 347999999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
|||+|.|.++.+ ...|.|+|||.+ .++++++||++.++|+++........|++|+
T Consensus 68 ~nE~f~f~v~~~~l~~~~L~~~V~d~~-~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 68 FNETLRYKVEREELPTRVLNLSVWHRD-SLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred cCceEEEECCHHHhCCCEEEEEEEeCC-CCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 999999998764 578999999999 7889999999999999998777788999874
No 23
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.87 E-value=9.5e-22 Score=149.48 Aligned_cols=111 Identities=25% Similarity=0.384 Sum_probs=95.9
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
.|+|.+++.|. .+.|.|.|++|+||+ +..|.+||||++++..+.....+++|++++++.||.|||+|.|.++...+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 49999999997 789999999999997 55778999999999754444457899999999999999999999987666
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
.. |.|+|||++.. ++++||++.+++.+...+..+|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w 118 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHW 118 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHH
Confidence 54 89999999998 8999999999999966566665
No 24
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.87 E-value=3.4e-21 Score=143.50 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=98.5
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~ 125 (268)
+|+|+|+ +|++|+ +..+.+| ||+ ..++|+++++++||+|||+|.|.+......|.|+|||++ ..++|++
T Consensus 1 ~L~v~v~-~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d-~~~~~~~ 78 (121)
T cd04042 1 QLDIHLK-EGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYD-RGLTDDF 78 (121)
T ss_pred CeEEEEE-EeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCC-CCCCCcc
Confidence 4899999 999998 7778999 998 578999999999999999999998776789999999999 7888999
Q ss_pred eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
||++.++++++..+...+.|++|.+... ....|+|++.+.|.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~ 120 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNS-DEDLGYISLVVTLT 120 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCC-ccCceEEEEEEEEC
Confidence 9999999999998888899999976543 34589999998863
No 25
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.87 E-value=2.1e-21 Score=145.19 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=96.1
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cC-CCCCC-ceE----------EEeeecccCCCCCC
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QP-HYYED-LCT----------QILNSPSVNPVTSP 92 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~-~~~~d-yv~----------~~~~T~~~~~t~nP 92 (268)
.|.++.+++|..+ .+.|.|+|+ +|+||+ +. .+.+| ||+ .+.||+++++++||
T Consensus 1 ~G~i~~sl~y~~~-------------~~~L~V~Vi-~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP 66 (125)
T cd04029 1 SGEILFSLSYDYK-------------TQSLNVHVK-ECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNP 66 (125)
T ss_pred CcEEEEEEEEECC-------------CCeEEEEEE-EecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCC
Confidence 4788999999766 789999999 999998 43 57899 998 35789999999999
Q ss_pred ccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 93 FFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 93 ~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
+|||+|.|.++.+ ...|.|+|||++ ..+++++||++.+++.++...+..+.|++|+
T Consensus 67 ~wnE~f~f~i~~~~l~~~~L~~~V~d~~-~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 67 VYNETLKYSISHSQLETRTLQLSVWHYD-RFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred cccceEEEECCHHHhCCCEEEEEEEECC-CCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999999998764 578999999999 7889999999999999999888899999884
No 26
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.87 E-value=1.2e-21 Score=148.84 Aligned_cols=111 Identities=25% Similarity=0.282 Sum_probs=94.4
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~ 234 (268)
.|+|++++.|. .++|.|.|++|+||+.. .+.+||||++.+.+++....+++|++++++.||+|||+|.|.++..+++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~ 80 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLD 80 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhC
Confidence 39999999998 78999999999999722 6679999999998655445678999999999999999999999887776
Q ss_pred e--EEEEEEecCCC-CCeeeEEEEEeCCccC--CCCCCC
Q psy3954 235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKE--TSSSWW 268 (268)
Q Consensus 235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~--~~~~~w 268 (268)
. |.|+|||++.. ++++||++.|+..... .+..||
T Consensus 81 ~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW 119 (137)
T cd08409 81 TASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHW 119 (137)
T ss_pred ccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHH
Confidence 5 99999999988 9999999999976443 345555
No 27
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.86 E-value=1.3e-21 Score=148.71 Aligned_cols=111 Identities=24% Similarity=0.349 Sum_probs=96.5
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
.|+|.+++.|. .+.|.|.|++|++|+ +..|.+||||++.+..++....+++|++++++.||.|||.|.|.++..++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 49999999997 889999999999997 45678999999999754444567899999999999999999999887666
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
+. |.|+|||++.+ ++++||++.|++.+.+.+..+|
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W 118 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHW 118 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHH
Confidence 54 99999999988 8999999999999877666665
No 28
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.86 E-value=3e-21 Score=144.23 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=97.8
Q ss_pred ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCcc
Q psy3954 26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~w 94 (268)
++|.+..++.|... .+.|.|+|+ +|+||+ +..+.+| ||+ ++.||+++++ +||+|
T Consensus 1 ~~G~l~~sl~Y~~~-------------~~~L~V~Vi-~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~f 65 (124)
T cd08389 1 KCGDLDVAFEYDPS-------------ARKLTVTVI-RAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVF 65 (124)
T ss_pred CCEEEEEEEEECCC-------------CCEEEEEEE-EecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcc
Confidence 46889999999977 789999999 999999 7778889 987 6789999988 99999
Q ss_pred CcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 95 GEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 95 ne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
||+|.|. ++.+ ...|.|+|||++ .++++++||++.++|+++........|++|+|
T Consensus 66 nE~F~f~~i~~~~l~~~~L~~~V~~~~-~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 66 NETFTFSRVEPEELNNMALRFRLYGVE-RMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred cCEEEECCCCHHHhccCEEEEEEEECC-CcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 9999998 6654 688999999999 78899999999999999988888999999975
No 29
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.86 E-value=2.9e-21 Score=143.78 Aligned_cols=103 Identities=24% Similarity=0.356 Sum_probs=90.7
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w 94 (268)
|.+..+++|. . +.|.|+|+ +|++|+ + .+.+| ||+ .++||+++++++||+|
T Consensus 2 G~l~~~l~y~-~--------------~~L~V~Vi-~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~w 64 (122)
T cd08381 2 GQVKLSISYK-N--------------GTLFVMVM-HAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTF 64 (122)
T ss_pred CeEEEEEEEe-C--------------CEEEEEEE-EeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCc
Confidence 5677777777 2 68999999 999999 6 88999 999 3678999999999999
Q ss_pred CcEEEEEe-cCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954 95 GEEFQFDI-PRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 95 ne~f~f~v-~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
||+|.|.+ +.. ...|.|+|||++ ..+++++||++.++|+++...+..+.|++|
T Consensus 65 nE~F~f~~~~~~~l~~~~L~~~V~d~d-~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 65 NEMLVYDGLPVEDLQQRVLQVSVWSHD-SLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ccEEEEecCChHHhCCCEEEEEEEeCC-CCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99999997 433 689999999999 788999999999999999977778899987
No 30
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=4.3e-21 Score=144.17 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=96.1
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCCCCCC-
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSK- 121 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~- 121 (268)
.|+|+|+ +|++|+ +..+.+| ||+ +.+||+++++++||+|||.|.|.+... ...|.|+|||.+ .++
T Consensus 1 ~L~V~vi-~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~-~~~~ 78 (127)
T cd04022 1 KLVVEVV-DAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR-RSGR 78 (127)
T ss_pred CeEEEEE-EeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC-CCcC
Confidence 3899999 999998 6778899 999 788999999999999999999998754 368999999999 665
Q ss_pred CCceeEEEEEeccccc-cccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 122 TDRVLGKVTIQRSDLH-RISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 122 ~d~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
.|++||++.++++++. .+.....|++|+........+|+|++++.+
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 7999999999999987 456678999998765445578999999876
No 31
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.86 E-value=2.2e-21 Score=147.53 Aligned_cols=111 Identities=25% Similarity=0.474 Sum_probs=95.1
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
.|+|.+++.|. .+.|.|+|++|+||+ +..|.+||||++.+..++....+++|++++++.||.|||+|.|.++.+.+
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 49999999997 689999999999997 56778999999999754444457899999999999999999999876655
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
.. |.|+|||++.. ++++||++.+++.+.+....+|
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w 118 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHW 118 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHH
Confidence 43 99999999988 8999999999999876555554
No 32
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.86 E-value=2.3e-21 Score=147.03 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=91.7
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~ 234 (268)
|+|.+++.|. .+.|.|+|++|++|+ +..|.+||||++++..+.....+++|++++++.||.|||+|.|.++..+++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 8999999995 889999999999997 567789999999997444445678999999999999999999999877676
Q ss_pred e--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
. |.|+|||++.. ++++||++.|+..+...
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~ 112 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP 112 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc
Confidence 5 99999999988 99999999998876655
No 33
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.86 E-value=6.5e-21 Score=142.63 Aligned_cols=109 Identities=28% Similarity=0.405 Sum_probs=93.3
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
.|+|.+++.|. .+.|.|+|++|+||+ +..|.+||||++++.++ ...+++|++++++.||+|||+|.|.++..++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC--CCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 59999999996 789999999999997 45677999999999733 2347899999999999999999999876555
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCC--CCCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKET--SSSWW 268 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~--~~~~w 268 (268)
.. |.|+|||++.+ ++++||++.++++++.. ....|
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W 119 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEW 119 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceE
Confidence 43 99999999988 89999999999999855 34444
No 34
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.86 E-value=3.3e-21 Score=146.18 Aligned_cols=110 Identities=20% Similarity=0.353 Sum_probs=95.3
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~ 234 (268)
|+|.+++.|. .+.|.|+|++|++|+ +..|.+||||++++..++....+++|++++++.||.|||+|.|.++.+.+.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 8899999998 789999999999997 456789999999997544445678999999999999999999998766665
Q ss_pred e--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
. |.|+|||++.. ++++||++.+++.....+..+|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w 117 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHW 117 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHH
Confidence 4 99999999988 8999999999998776666665
No 35
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.86 E-value=6.9e-21 Score=142.72 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=94.0
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCC-CCCC-ceE----------EEeeecccCCCCCC
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPH-YYED-LCT----------QILNSPSVNPVTSP 92 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~-~~~d-yv~----------~~~~T~~~~~t~nP 92 (268)
.|.+..+++|... .+.|.|+|+ +|+||+ +.. |.+| ||+ .+.||+++++++||
T Consensus 1 ~G~i~~sl~Y~~~-------------~~~L~V~V~-~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP 66 (128)
T cd08392 1 TGEIEFALHYNFR-------------TSCLEITIK-ACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP 66 (128)
T ss_pred CcEEEEEEEEeCC-------------CCEEEEEEE-ecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence 3788889999977 789999999 999998 544 8899 999 36799999999999
Q ss_pred ccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc---cCccceecC
Q psy3954 93 FFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI---SNKEHWFPL 148 (268)
Q Consensus 93 ~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~---~~~~~w~~L 148 (268)
+|||+|.|.++.. ...|.+.|||.+ .++++++||++.|+|+++... .....||+|
T Consensus 67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~-~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 67 VFNETLKYVVEADLLSSRQLQVSVWHSR-TLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred ccceEEEEEcCHHHhCCcEEEEEEEeCC-CCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999998775 579999999999 788999999999999998753 356789987
No 36
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.85 E-value=1.7e-20 Score=140.51 Aligned_cols=112 Identities=18% Similarity=0.364 Sum_probs=95.0
Q ss_pred CeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCc
Q psy3954 53 LGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDR 124 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~ 124 (268)
...|+|+|+ +|++|+. .+.+| ||+ +..||++. +++||.|||+|.|.+... ...+.|.|||.+ ..++|+
T Consensus 3 ~~~L~V~Vi-~A~~L~~-~~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~-~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVL-EAHKLPV-KHVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKA-KRSKDS 78 (126)
T ss_pred eeEEEEEEE-EeeCCCC-CCCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECC-CCCCCC
Confidence 457999999 9999993 45789 999 45789875 689999999999986554 467999999999 788999
Q ss_pred eeEEEEEeccccccccCccceecCcccCC-CcccceEEEEEEEEc
Q psy3954 125 VLGKVTIQRSDLHRISNKEHWFPLTPVTQ-DSEVQGKIQIGVLST 168 (268)
Q Consensus 125 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~~G~i~v~l~~~ 168 (268)
+||++.+|++++..+...+.|++|.+... .....|+|++++.|.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 99999999999988777899999988754 345679999999985
No 37
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.85 E-value=4.6e-21 Score=145.20 Aligned_cols=109 Identities=27% Similarity=0.463 Sum_probs=93.5
Q ss_pred EEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce
Q psy3954 160 KIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE 235 (268)
Q Consensus 160 ~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~ 235 (268)
.|++++.|. .+.|.|+|++|++|+ +..|.+||||++.+.++.....+++|++++++.||+|||+|.|.+...++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 378899997 799999999999997 5567899999999985544456789999999999999999999988766653
Q ss_pred --EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 236 --LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 236 --l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
|.|+|||++.. ++++||++.+++++......+|
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W 116 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHW 116 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHH
Confidence 99999999988 8999999999999866655555
No 38
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.85 E-value=7.4e-21 Score=141.54 Aligned_cols=107 Identities=21% Similarity=0.363 Sum_probs=92.0
Q ss_pred EEEEEEEcccCc---cc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC---
Q psy3954 55 TLRIRIQYTADH---IL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS--- 120 (268)
Q Consensus 55 ~L~V~v~~~a~~---L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~--- 120 (268)
.|.|+|+ +|++ |+ +..|.+| ||+ ++.||+++++++||+|||+|.|.+......|.|+|||.+ ..
T Consensus 1 ~L~v~v~-~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d-~~~~~ 78 (126)
T cd08379 1 ILEVGIL-GAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNS-QSHWK 78 (126)
T ss_pred CeEEEEE-EeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECC-Ccccc
Confidence 3889999 9999 66 7789999 999 788999999999999999999999877679999999999 55
Q ss_pred ---CCCceeEEEEEeccccccccCccceecCcccCCC-cccceEEEE
Q psy3954 121 ---KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD-SEVQGKIQI 163 (268)
Q Consensus 121 ---~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~v 163 (268)
.+|++||++.++++.+..+.....|++|.+.... ....|+|+.
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 3899999999999999887778999999865432 335677764
No 39
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.85 E-value=1.2e-20 Score=141.68 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=90.0
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEE-EccCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF-DRSLG 231 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f-~v~~~ 231 (268)
.|+|.+++.|. .+.|.|+|++|+||+ +.. |.+||||++.+.++ ..++.+|++++++.||.|||+|.| .++..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~--~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE--KEHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC--cCceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 69999999998 789999999999997 343 77999999999733 345679999999999999999999 46555
Q ss_pred CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
++.. |.++|||++.+ ++++||++.++|+++..+
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~ 115 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLL 115 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCC
Confidence 5443 99999999988 999999999999999664
No 40
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.85 E-value=9.3e-21 Score=141.54 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=90.9
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLGD 232 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~~ 232 (268)
.|+|++++.|. .++|.|+|++|+||+ +..|.+||||++.+.+. +..+++|+++++ .||+|||+|.|+ ++..+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~--~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS--KKQRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC--CcceeecccccC-CCCcccCEEEECCCCHHH
Confidence 59999999999 589999999999997 45677999999988743 345789999988 999999999998 77666
Q ss_pred Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
+.. |.|+|||++.+ ++++||++.|+|+.+..+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~ 113 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLE 113 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCC
Confidence 665 99999999988 899999999999999764
No 41
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=1.3e-20 Score=141.11 Aligned_cols=111 Identities=25% Similarity=0.350 Sum_probs=92.2
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC-CC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL-GD 232 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~-~~ 232 (268)
.|+|.+++.|. .+.|.|+|++|++|+ +..+.+||||++++..++....+++|++++++.||+|||+|.|.+.. .+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 69999999999 689999999999997 45677999999999754444567899999999999999999998533 44
Q ss_pred Cc--eEEEEEEecCCC-CCeeeEEEEEeCCccC-CCCCCC
Q psy3954 233 PI--ELVVSLHHDISG-LNVFLGEVHIPLNNKE-TSSSWW 268 (268)
Q Consensus 233 ~~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~-~~~~~w 268 (268)
+. .|.|+|||++.. ++++||++.+++++.. .+...|
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W 121 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDDEPHW 121 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccCCcce
Confidence 43 399999999988 8999999999999832 244444
No 42
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.85 E-value=1.5e-20 Score=140.57 Aligned_cols=105 Identities=27% Similarity=0.361 Sum_probs=92.3
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
.|+|++++.|. .+.|.|.|++|+||+ +..|.+||||++++.++. ..+++|++++++.||+|||+|.|.++..++
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR--SNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC--CCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 59999999999 789999999999997 557789999999996332 346899999999999999999999887665
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
.. |.|+|||++.+ ++++||++.++++++..+
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~ 113 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLS 113 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCC
Confidence 54 99999999988 899999999999999753
No 43
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.85 E-value=1.6e-20 Score=140.91 Aligned_cols=111 Identities=21% Similarity=0.380 Sum_probs=97.2
Q ss_pred EEEEEEcccCccccCCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeE
Q psy3954 56 LRIRIQYTADHILQPHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLG 127 (268)
Q Consensus 56 L~V~v~~~a~~L~~~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG 127 (268)
|.|+|+ +|++|+...+.+| ||+ ..+||+++++++||+|||+|.|.+......|.|+|||.+ ..++|++||
T Consensus 1 l~v~v~-~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~-~~~~~~~lG 78 (126)
T cd08678 1 LLVKNI-KANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNG-KKSDSKFLG 78 (126)
T ss_pred CEEEEE-EecCCCCCCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECC-CCCCCceEE
Confidence 579999 9999986567899 998 457999999999999999999999776788999999999 788899999
Q ss_pred EEEEeccccccccCccceecCcccCC-CcccceEEEEEEEEc
Q psy3954 128 KVTIQRSDLHRISNKEHWFPLTPVTQ-DSEVQGKIQIGVLST 168 (268)
Q Consensus 128 ~~~i~l~~l~~~~~~~~w~~L~~~~~-~~~~~G~i~v~l~~~ 168 (268)
++.+++.++........|++|.+... .....|+|.+++.|.
T Consensus 79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~ 120 (126)
T cd08678 79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFM 120 (126)
T ss_pred EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEe
Confidence 99999999987777789999987642 345689999999885
No 44
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.85 E-value=1.3e-20 Score=141.03 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=97.2
Q ss_pred ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCcc
Q psy3954 26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~w 94 (268)
+.|.+..+++|... .+.|.|+|+ +|++|+ +..+.+| ||+ ..+||+++++++||+|
T Consensus 1 ~~G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~w 66 (124)
T cd08385 1 KLGKLQFSLDYDFQ-------------SNQLTVGII-QAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 66 (124)
T ss_pred CccEEEEEEEEeCC-------------CCEEEEEEE-EeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCce
Confidence 46888888889877 789999999 999998 6778899 998 3569999999999999
Q ss_pred CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
||+|.|.++.. ...|.|+|||.+ .++++++||++.++++++..+...+.|++|.
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~V~d~d-~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 67 NETFTFKVPYSELGNKTLVFSVYDFD-RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eeeEEEeCCHHHhCCCEEEEEEEeCC-CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999998764 578999999999 7888999999999999998778889999885
No 45
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.85 E-value=1.2e-20 Score=139.89 Aligned_cols=108 Identities=20% Similarity=0.329 Sum_probs=93.5
Q ss_pred eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954 54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD 123 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d 123 (268)
|.|.|+|+ +|++|+ +..+.+| ||+ ...+|+++.+ ++||+|||.|.|.++.. .+.|.|+|||++ ..+ |
T Consensus 1 g~L~V~v~-~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~-~~~-~ 77 (118)
T cd08681 1 GTLVVVVL-KARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDD-KRK-P 77 (118)
T ss_pred CEEEEEEE-EccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCC-CCC-C
Confidence 57999999 999999 6778899 998 6788998754 79999999999999875 688999999999 665 8
Q ss_pred ceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 124 RVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 124 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
++||++.++++++..+.....|++|.... ...|+|++++.|
T Consensus 78 ~~iG~~~~~l~~~~~~~~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 78 DLIGDTEVDLSPALKEGEFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred cceEEEEEecHHHhhcCCCCCcEEeccCC---cEeeEEEEEEEC
Confidence 89999999999987666789999997533 457999999876
No 46
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.85 E-value=1.4e-20 Score=140.88 Aligned_cols=108 Identities=22% Similarity=0.369 Sum_probs=96.9
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccC
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFG 95 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wn 95 (268)
.|.++.++.|... .+.|.|+|+ +|++|+ +..+.+| ||+ ..+||+++++++||+||
T Consensus 2 ~G~l~~sl~y~~~-------------~~~L~V~v~-~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 2 RGELHFSLEYDKD-------------MGILNVKLI-QARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred CCEEEEEEEECCC-------------CCEEEEEEE-EeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence 4788888888776 789999999 999999 7788899 998 46899999999999999
Q ss_pred cEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 96 e~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
|+|.|.++.. ...|.|+|||.+ .+++|++||++.++++++......+.|++|+
T Consensus 68 e~f~f~v~~~~l~~~~l~i~V~d~~-~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 68 ESFVFEVPPQELPKRTLEVLLYDFD-QFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred cEEEEeCCHHHhCCCEEEEEEEECC-CCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999998775 578999999999 7888999999999999998777889999985
No 47
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.85 E-value=1.2e-20 Score=141.69 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=94.3
Q ss_pred ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCC-CCCC-ceE--------EEeeecccCCCCCCc
Q psy3954 26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPH-YYED-LCT--------QILNSPSVNPVTSPF 93 (268)
Q Consensus 26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~-~~~d-yv~--------~~~~T~~~~~t~nP~ 93 (268)
++|.+..+++|... .+.|.|+|+ +|++|+ +.. +.+| ||+ ++.||+++++++||+
T Consensus 1 ~~G~l~~~l~y~~~-------------~~~L~V~Vi-~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~ 66 (128)
T cd08388 1 KLGTLFFSLRYNSE-------------KKALLVNII-ECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPV 66 (128)
T ss_pred CCeEEEEEEEEECC-------------CCEEEEEEE-EeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCc
Confidence 36888899989887 789999999 999999 554 8899 998 466999999999999
Q ss_pred cCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc--cCccceecCcc
Q psy3954 94 FGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI--SNKEHWFPLTP 150 (268)
Q Consensus 94 wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~--~~~~~w~~L~~ 150 (268)
|||+|.|. ++.. ...|.|+|||+| .+++|++||++.++|+++... .+...|.+|+|
T Consensus 67 wnE~F~f~~~~~~~~~~~~L~~~V~d~d-~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 67 YDETFTFYGIPYNQLQDLSLHFAVLSFD-RYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred eeeEEEEcccCHHHhCCCEEEEEEEEcC-CCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 99999994 5543 467999999999 788999999999999999754 55778998865
No 48
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.85 E-value=1.9e-20 Score=145.95 Aligned_cols=106 Identities=29% Similarity=0.404 Sum_probs=90.6
Q ss_pred ceEEEEEEEEcC--------------CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccc
Q psy3954 158 QGKIQIGVLSTP--------------TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFN 221 (268)
Q Consensus 158 ~G~i~v~l~~~~--------------~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~n 221 (268)
.|+|.+++.|.. +.|.|+|++|+||+ +..|.+||||++++..+.....+++|++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 489999999985 78999999999997 45677999999999755545668999999999999999
Q ss_pred eEEEEEc-cCCCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 222 ESFMFDR-SLGDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 222 e~f~f~v-~~~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
|.|.|.+ ...++.. |.|+|||++.+ ++++||++.++++++..
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence 9999984 3444443 99999999988 89999999999998753
No 49
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.85 E-value=2.1e-20 Score=139.63 Aligned_cols=106 Identities=30% Similarity=0.433 Sum_probs=91.8
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCC--C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLT--Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
|+|++++.|. .+.|.|+|++|+||+ + ..+.+||||++++.++.....+++|++++++.||+|||+|.|.++..++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 8999999996 799999999999997 3 4577999999999754443457899999999999999999999887665
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
.. |.|+|||++.. ++++||++.++++++..+
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLD 114 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEeccccccc
Confidence 43 99999999988 899999999999999553
No 50
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.85 E-value=3.5e-20 Score=140.47 Aligned_cols=115 Identities=19% Similarity=0.274 Sum_probs=95.9
Q ss_pred ccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCC
Q psy3954 47 NQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRD 117 (268)
Q Consensus 47 ~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d 117 (268)
+....+.|.|+|+|+ +|++|+ +..+.+| ||+ ..+||+++++++||.|||+|.|.+... ...|.|+|||.+
T Consensus 8 ~~~~~~~G~L~V~Vi-~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 8 SQRASGIGRLMVVIV-EGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred ccCCCCcEEEEEEEE-EeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 344566899999999 999998 6788999 999 789999999999999999999998765 678999999999
Q ss_pred CCCCCCceeEEEEEecccccc-----ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 118 RTSKTDRVLGKVTIQRSDLHR-----ISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 118 ~~~~~d~~iG~~~i~l~~l~~-----~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
..++|++||++.+++.++.. ......|..+. ....|+|++++.+.
T Consensus 87 -~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~~~~g~i~l~~~~~ 136 (136)
T cd08375 87 -FFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH-----EVPTGEVVVKLDLQ 136 (136)
T ss_pred -CCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----cccceeEEEEEEeC
Confidence 78889999999999999875 22233555553 23379999998763
No 51
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.84 E-value=3e-20 Score=139.61 Aligned_cols=106 Identities=29% Similarity=0.393 Sum_probs=92.8
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
.|+|.+++.|. .+.|.|+|++|+||+ +..+.+||||++++..++....+++|++++++.||+|||+|.|.+...++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l 81 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL 81 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence 69999999999 599999999999997 45677999999999855444668899999999999999999999877666
Q ss_pred ce--EEEEEEecCCC---CCeeeEEEEEeCCccCC
Q psy3954 234 IE--LVVSLHHDISG---LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 234 ~~--l~i~V~d~~~~---~~~~lG~~~l~l~~~~~ 263 (268)
.. |.|+|||++.. ++++||++.+++.++..
T Consensus 82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~ 116 (127)
T cd04030 82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL 116 (127)
T ss_pred cCCEEEEEEEECCcccCCCCceEEEEEEecccccc
Confidence 54 99999998863 78999999999999865
No 52
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.84 E-value=2.3e-20 Score=138.78 Aligned_cols=104 Identities=15% Similarity=0.278 Sum_probs=91.6
Q ss_pred EeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCccC
Q psy3954 30 KHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPFFG 95 (268)
Q Consensus 30 ~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wn 95 (268)
++.++.|... .+.|.|+|+ +|+||+ +..+.+| ||+ .++||+++++++||+||
T Consensus 3 i~~sL~Y~~~-------------~~~L~V~V~-~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfn 68 (124)
T cd08680 3 VQIGLRYDSG-------------DSSLVISVE-QLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFN 68 (124)
T ss_pred EEEEEEECCC-------------CCEEEEEEe-EecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccc
Confidence 5667788877 789999999 999998 6778899 999 27899999999999999
Q ss_pred cEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc-cCccceecC
Q psy3954 96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI-SNKEHWFPL 148 (268)
Q Consensus 96 e~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~-~~~~~w~~L 148 (268)
|+|.|.++.+ ...|.|.|||.+ ..+++++||++.++|+++... .....|++|
T Consensus 69 E~F~f~v~~~~L~~~~L~~~V~~~~-~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 69 EVFRVPISSTKLYQKTLQVDVCSVG-PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cEEEEECCHHHhhcCEEEEEEEeCC-CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999998876 789999999999 788999999999999999654 357789875
No 53
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.84 E-value=3.1e-20 Score=138.26 Aligned_cols=109 Identities=32% Similarity=0.578 Sum_probs=95.8
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCcee
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVL 126 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~i 126 (268)
|.|+|+ +|++|+ +..|.+| ||+ ...||+++++++||+|||.|.|.++.....|.|+|||.+ ..++|++|
T Consensus 2 l~v~vi-~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~-~~~~d~~i 79 (121)
T cd04054 2 LYIRIV-EGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDED-TLSRDDVI 79 (121)
T ss_pred EEEEEE-EeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECC-CCCCCCEE
Confidence 789999 999998 7788999 998 357999999999999999999999877789999999999 78899999
Q ss_pred EEEEEeccccccc-cCccceecCcccCCCcccceEEEEEEE
Q psy3954 127 GKVTIQRSDLHRI-SNKEHWFPLTPVTQDSEVQGKIQIGVL 166 (268)
Q Consensus 127 G~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~G~i~v~l~ 166 (268)
|++.++++++... ...+.|++|.+..+.....|+|++.+.
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999888743 347899999987666667899998864
No 54
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=4.5e-20 Score=136.41 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=94.4
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~ 125 (268)
.|+|+|+ +|++|+ +..+.+| ||+ ...+|+++++|+||.|||+|.|.+... ...|.|+|||.+ ..++|++
T Consensus 1 ~~~V~v~-~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~-~~~~~~~ 78 (116)
T cd08376 1 VVTIVLV-EGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKD-TGKKDEF 78 (116)
T ss_pred CEEEEEE-EEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECC-CCCCCCe
Confidence 3789999 999999 6678899 999 678999999999999999999998776 789999999999 7888999
Q ss_pred eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
||++.++++++..+...+.|++|.+. .|+|++.+.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~------~G~~~~~~~~ 114 (116)
T cd08376 79 IGRCEIDLSALPREQTHSLELELEDG------EGSLLLLLTL 114 (116)
T ss_pred EEEEEEeHHHCCCCCceEEEEEccCC------CcEEEEEEEe
Confidence 99999999999887888999999764 4999888776
No 55
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=3.3e-20 Score=140.47 Aligned_cols=110 Identities=19% Similarity=0.319 Sum_probs=96.0
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE-----E-------EeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT-----Q-------ILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS 120 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~-------~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~ 120 (268)
|+|+|+ +|++|+ +..+.+| ||+ . ..+|+++++|.||.|||+|.|.+......|.|+|||.+ ..
T Consensus 2 L~v~Vi-~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~-~~ 79 (133)
T cd04033 2 LRVKVL-AGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN-RL 79 (133)
T ss_pred EEEEEE-EeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC-CC
Confidence 789999 999999 6678899 998 2 46899999999999999999999876788999999999 78
Q ss_pred CCCceeEEEEEeccccccccC------ccceecCcccCCCcccceEEEEEEEE
Q psy3954 121 KTDRVLGKVTIQRSDLHRISN------KEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 121 ~~d~~iG~~~i~l~~l~~~~~------~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
++|++||++.+++.++..... ...|++|++........|+|++++.|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 889999999999999885432 45899999776556679999999987
No 56
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=4.4e-20 Score=137.26 Aligned_cols=107 Identities=21% Similarity=0.332 Sum_probs=92.1
Q ss_pred EEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEE
Q psy3954 56 LRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGK 128 (268)
Q Consensus 56 L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~ 128 (268)
|.|+|+ +|++|+.. .+| ||+ +..||+++++++||+|||+|.|.+... ...|.|+|||++ .. ++++||+
T Consensus 2 L~V~Vi-~a~~L~~~--~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d-~~-~~~~lG~ 76 (121)
T cd08378 2 LYVRVV-KARGLPAN--SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKD-KA-KDDFLGG 76 (121)
T ss_pred EEEEEE-EecCCCcc--cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCC-CC-cCceeee
Confidence 789999 99999944 789 999 788999999999999999999998764 789999999999 56 7889999
Q ss_pred EEEecccccccc-----CccceecCcccCCCcccceEEEEEEEEc
Q psy3954 129 VTIQRSDLHRIS-----NKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 129 ~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
+.++++++.... ....|++|.+... ....|+|++++.|.
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 999999987432 2568999988764 55689999999873
No 57
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=3.7e-20 Score=137.48 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=92.0
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD 123 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d 123 (268)
|.|+|+ +|++|+ +..+.+| ||+ ...||++++++.||+|||+|.|.+... ...|.|+|||++ .. +|
T Consensus 2 L~V~vi-~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d-~~-~~ 78 (119)
T cd04036 2 LTVRVL-RATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDED-YV-MD 78 (119)
T ss_pred eEEEEE-EeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECC-CC-CC
Confidence 789999 999999 6678899 998 357999999999999999999998776 568999999999 67 88
Q ss_pred ceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 124 RVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 124 ~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
++||++.++++++..+.....|++|.+.. .|++.+++.++
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~~~-----~g~l~~~~~~~ 118 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNPQG-----KEELEVEFLLE 118 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCCCC-----CceEEEEEEee
Confidence 99999999999999888889999997642 68888887653
No 58
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=2.6e-20 Score=137.45 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=83.9
Q ss_pred EEEEEEEcccCccc-cCCCCCC-ceE-E-----------EeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeC
Q psy3954 55 TLRIRIQYTADHIL-QPHYYED-LCT-Q-----------ILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDR 116 (268)
Q Consensus 55 ~L~V~v~~~a~~L~-~~~~~~d-yv~-~-----------~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~ 116 (268)
.|+|+|+ +|++|+ ...|.+| ||+ . +++|+++++|+||+|||+|.|.++.+ ...|.|.|||+
T Consensus 1 kL~V~Vi-~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVV-AANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEE-ECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999 999999 3358999 999 1 46899999999999999999998754 46799999999
Q ss_pred CCCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954 117 DRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT 152 (268)
Q Consensus 117 d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 152 (268)
| ..++|++||++.+|+.++..++....|++|.+..
T Consensus 80 d-~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 C-FARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRI 114 (120)
T ss_pred c-ccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcc
Confidence 9 7888999999999999999888889999997654
No 59
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.83 E-value=5.4e-20 Score=137.83 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=96.3
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccC
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFG 95 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wn 95 (268)
+|.++.+++|... .+.|.|+|+ +|++|+ +..+.+| ||+ ...||++++++.||.||
T Consensus 2 ~G~l~~~l~y~~~-------------~~~L~v~v~-~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wn 67 (125)
T cd08386 2 LGRIQFSVSYDFQ-------------ESTLTLKIL-KAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 67 (125)
T ss_pred ccEEEEEEEECCC-------------CCEEEEEEE-EecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccc
Confidence 5889999999877 789999999 999998 6778899 998 46799999999999999
Q ss_pred cEEEEEe-cCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 96 EEFQFDI-PRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 96 e~f~f~v-~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
|+|.|.+ +.+ ...|.|+|||++ ..+++++||++.++++++......+.|++|.|
T Consensus 68 e~f~f~~~~~~~l~~~~l~~~v~d~d-~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 68 ETFLFEGFPYEKLQQRVLYLQVLDYD-RFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred eeEEEcccCHHHhCCCEEEEEEEeCC-CCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 9999984 332 467999999999 78889999999999999998888899999865
No 60
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=6.2e-20 Score=141.21 Aligned_cols=111 Identities=21% Similarity=0.361 Sum_probs=94.9
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~ 125 (268)
|.|+|+ +|++|+ +..|.+| ||+ +..+|+++.+ ++||+|||.|.|.++.. .+.|.|+|+|.+ ..++|++
T Consensus 2 L~V~Vi-~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~-~~~~dd~ 79 (150)
T cd04019 2 LRVTVI-EAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRV-GPNKDEP 79 (150)
T ss_pred EEEEEE-EeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEec-CCCCCCe
Confidence 789999 999998 7788999 999 7889999876 69999999999998765 579999999999 7778999
Q ss_pred eEEEEEeccccccc----cCccceecCcccCC------CcccceEEEEEEEEc
Q psy3954 126 LGKVTIQRSDLHRI----SNKEHWFPLTPVTQ------DSEVQGKIQIGVLST 168 (268)
Q Consensus 126 iG~~~i~l~~l~~~----~~~~~w~~L~~~~~------~~~~~G~i~v~l~~~ 168 (268)
||++.++|.++..+ ...+.|++|.+... .....|+|++.+.|.
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 99999999998643 34689999987642 234579999999886
No 61
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=167.34 Aligned_cols=208 Identities=23% Similarity=0.299 Sum_probs=171.9
Q ss_pred cCCCeEEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC
Q psy3954 50 IQDLGTLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS 120 (268)
Q Consensus 50 ~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~ 120 (268)
....|.++|.|. .|.+|. ...+.+| |++ .++||-..-.++||+|||.....+....+.|.+++.|.. ..
T Consensus 707 ~~pIg~irv~v~-~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~-~s 784 (1227)
T COG5038 707 DTPIGAIRVSVR-KANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYE-ES 784 (1227)
T ss_pred cCccceEEEEee-hhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecch-hc
Confidence 566899999999 999998 6788999 998 789999999999999999999888888888999999999 88
Q ss_pred CCCceeEEEEEeccccccccCccc----------eecCcccCCCcccceEEEEEEEEc----------------------
Q psy3954 121 KTDRVLGKVTIQRSDLHRISNKEH----------WFPLTPVTQDSEVQGKIQIGVLST---------------------- 168 (268)
Q Consensus 121 ~~d~~iG~~~i~l~~l~~~~~~~~----------w~~L~~~~~~~~~~G~i~v~l~~~---------------------- 168 (268)
+.|..+|++.++.+++....+... --.|... .....|.+.+.+.|.
T Consensus 785 gddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~--~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~ 862 (1227)
T COG5038 785 GDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLT--GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKR 862 (1227)
T ss_pred cccceeceeeeeeeeeeecCCCcceEEeecCcccccccccc--cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHHH
Confidence 999999999999988775221110 0011110 123345555555553
Q ss_pred --------------------------------------------------------------------------------
Q psy3954 169 -------------------------------------------------------------------------------- 168 (268)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (268)
T Consensus 863 ~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~ 942 (1227)
T COG5038 863 KSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASH 942 (1227)
T ss_pred HhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3954 169 -------------------------------------------------------------------------------- 168 (268)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (268)
T Consensus 943 ~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~ 1022 (1227)
T COG5038 943 PQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVS 1022 (1227)
T ss_pred ceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEE
Confidence
Q ss_pred ----------------CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954 169 ----------------PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL 230 (268)
Q Consensus 169 ----------------~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~ 230 (268)
+|.|.|.+..|.||+ +.+|.+||||++.+. ....++|+++++++||+|||.+..++..
T Consensus 1023 ~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln----~k~vyktkv~KktlNPvwNEe~~i~v~~ 1098 (1227)
T COG5038 1023 YTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN----EKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098 (1227)
T ss_pred EeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEec----ceecccccchhccCCCCccccceEeeec
Confidence 888999999999998 678889999999997 2348999999999999999999999988
Q ss_pred CCCceEEEEEEecCCC-CCeeeEEEEEeCCccCCCC
Q psy3954 231 GDPIELVVSLHHDISG-LNVFLGEVHIPLNNKETSS 265 (268)
Q Consensus 231 ~~~~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~ 265 (268)
...+.+.+.|+|||.. +++.||.+.++|..+..+.
T Consensus 1099 r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038 1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred cccceEEEEEeecccCCCccccccccccHhhcCcCC
Confidence 7777799999999999 9999999999999998753
No 62
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=8e-20 Score=134.82 Aligned_cols=95 Identities=22% Similarity=0.262 Sum_probs=78.6
Q ss_pred eEEEEEceecCCCCC-CCCCCCEEEEEEEe--cCCcceeeeceeccCCCCCccceEEEEEccCC-CCce--EEEEEEecC
Q psy3954 171 SLMVNVNEASGLTQV-NGQCDPTAMVTVHY--THNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-DPIE--LVVSLHHDI 244 (268)
Q Consensus 171 ~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~--~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-~~~~--l~i~V~d~~ 244 (268)
+|+|.|++|++|+.. .|.+||||+|++.. .+.+.++++|+++.+++||+|||+|.|.++.. .+.. |.|.|||++
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 489999999999732 47899999999962 12334567999999999999999999999754 3333 999999998
Q ss_pred CC-CCeeeEEEEEeCCccCCCC
Q psy3954 245 SG-LNVFLGEVHIPLNNKETSS 265 (268)
Q Consensus 245 ~~-~~~~lG~~~l~l~~~~~~~ 265 (268)
.. ++++||++.+|++++..+.
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~ 102 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAG 102 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCC
Confidence 77 7999999999999998754
No 63
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.83 E-value=9.8e-20 Score=136.78 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=95.8
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
+|.+..+++|..+ .+.|.|+|+ +|+||+ +..+.+| ||+ ..+||++++++.||+
T Consensus 2 ~G~l~~~l~y~~~-------------~~~L~V~vi-~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~ 67 (127)
T cd04030 2 LGRIQLTIRYSSQ-------------RQKLIVTVH-KCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPV 67 (127)
T ss_pred CeEEEEEEEEeCC-------------CCEEEEEEE-EEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCE
Confidence 5888899999877 789999999 999999 6678899 998 367999999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCC--CCCceeEEEEEeccccccccCccceecCc
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTS--KTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~--~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
|||+|.|.++.. ...|.+.|||.+ .. +++++||++.+++.++..+.....|++|+
T Consensus 68 wne~f~f~i~~~~l~~~~l~i~v~~~~-~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 68 FDETFEFPVSLEELKRRTLDVAVKNSK-SFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECeEEEEecCHHHhcCCEEEEEEEECC-cccCCCCceEEEEEEecccccccCCccceEECc
Confidence 999999998765 578999999999 54 68999999999999998777888999874
No 64
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.83 E-value=6.7e-20 Score=135.74 Aligned_cols=93 Identities=17% Similarity=0.307 Sum_probs=81.6
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCC
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRD 117 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d 117 (268)
.+.|.|+|+ +|+||+ + .+.+| ||+ .+.||+++++++||+|||+|.|.++.+ ...|.|.|||.+
T Consensus 11 ~~~L~V~Vi-~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 11 NRKLTLHVL-EAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred CCEEEEEEE-EEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 578999999 999998 5 78899 999 366899999999999999999998775 467999999999
Q ss_pred CCCC-CCceeEEEEEeccccccccCccceecC
Q psy3954 118 RTSK-TDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 118 ~~~~-~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
... ++++||.+.+++.++..+...+.||.|
T Consensus 89 -~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 -SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred -CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 554 578999999999999877778899975
No 65
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.82 E-value=2.2e-19 Score=133.26 Aligned_cols=110 Identities=23% Similarity=0.390 Sum_probs=96.1
Q ss_pred eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954 54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~ 125 (268)
|.|.|+|+ +|++|+ +..+.+| ||+ ...+|++++++.||.|||+|.|.+......|.|+|||.+ ..+++++
T Consensus 1 g~l~v~v~-~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~-~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVI-RASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDED-KDKKPEF 78 (119)
T ss_pred CEEEEEEE-eeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECC-CCCCCce
Confidence 57899999 999999 6678899 998 567999999999999999999998776789999999999 7788999
Q ss_pred eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
||++.+++.++..+ ...|++|.+........|+|.+++.+
T Consensus 79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999998643 46899998766555679999999875
No 66
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.82 E-value=1.2e-19 Score=136.02 Aligned_cols=104 Identities=27% Similarity=0.389 Sum_probs=88.9
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEc-cCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDR-SLGD 232 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v-~~~~ 232 (268)
.|+|++++.|. .+.|.|.|++|+||+ +..+.+||||++.+..+ ...+.+|++++++.||.|||+|.|.+ +.+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~--~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD--KKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCC--CCcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 59999999998 889999999999997 45778999999999632 23468999999999999999999974 3333
Q ss_pred Cce--EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 233 PIE--LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 233 ~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
+.. |.++|||++.. ++++||++.++++++..
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~ 113 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDL 113 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccC
Confidence 333 99999999988 89999999999999875
No 67
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.82 E-value=1.3e-19 Score=136.36 Aligned_cols=112 Identities=19% Similarity=0.319 Sum_probs=96.0
Q ss_pred eEEEEEEEcccCccc--cC--CCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC-CCcEEEEEEEeCCCCCCC
Q psy3954 54 GTLRIRIQYTADHIL--QP--HYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR-RFRHLAVYAYDRDRTSKT 122 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~--~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~-~~~~l~~~v~d~d~~~~~ 122 (268)
|.|+|+|+ +|++|+ +. .+.+| ||+ ...+|+++++++||.|||+|.|.+.. ..+.|.|+|||.+ ..++
T Consensus 1 g~l~v~v~-~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~-~~~~ 78 (128)
T cd04024 1 GVLRVHVV-EAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKD-RFAG 78 (128)
T ss_pred CEEEEEEE-EeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECC-CCCC
Confidence 57999999 999998 66 78899 998 77899999999999999999999887 3789999999999 7888
Q ss_pred CceeEEEEEecccccc---ccCccceecCcccCCC--cccceEEEEEEEE
Q psy3954 123 DRVLGKVTIQRSDLHR---ISNKEHWFPLTPVTQD--SEVQGKIQIGVLS 167 (268)
Q Consensus 123 d~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~~~--~~~~G~i~v~l~~ 167 (268)
+++||++.++++++.. ......|++|.+.... ....|+|++++.+
T Consensus 79 ~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 79 KDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 9999999999999873 2346789999876432 4468999998864
No 68
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=1.6e-19 Score=134.82 Aligned_cols=109 Identities=25% Similarity=0.402 Sum_probs=94.0
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~ 125 (268)
+|+|+|+ +|++|+ +..+.+| ||+ ...+|+++++++||.|||+|.|.+... ...|.|+|||++ ..+++++
T Consensus 1 ~L~v~vi-~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~-~~~~~~~ 78 (123)
T cd04025 1 RLRCHVL-EARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWD-LVSKNDF 78 (123)
T ss_pred CEEEEEE-EeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECC-CCCCCcE
Confidence 4899999 999998 6678899 998 678999999999999999999998876 688999999999 7888999
Q ss_pred eEEEEEeccccccccCccceecCcccCCC----cccceEEEEEE
Q psy3954 126 LGKVTIQRSDLHRISNKEHWFPLTPVTQD----SEVQGKIQIGV 165 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~----~~~~G~i~v~l 165 (268)
||++.++++++......+.|+.|.+.... ....|.|.+.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 79 LGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred eEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 99999999999876677899999874422 34578888765
No 69
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.82 E-value=5.4e-20 Score=139.11 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=92.7
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
+|.+..++.|... .+.|.|+|+ +|+||+ +..|.+| ||+ .+.||+++++++||+
T Consensus 1 ~G~i~~sL~Y~~~-------------~~~L~V~Vi-~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~ 66 (136)
T cd08406 1 VGEILLSLSYLPT-------------AERLTVVVV-KARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPI 66 (136)
T ss_pred CcEEEEEEEEcCC-------------CCEEEEEEE-EeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCe
Confidence 4889999999877 789999999 999999 7788999 999 366899999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
|||+|.|.++.. ...|.|.|||+| ..+++++||++.++... .+.+.++|..+..
T Consensus 67 ~nE~f~F~v~~~~l~~~~l~~~V~~~d-~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 67 FNEAMIFSVPAIVLQDLSLRVTVAEST-EDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred eceeEEEECCHHHhCCcEEEEEEEeCC-CCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 999999998875 688999999999 78899999999997653 4566788877643
No 70
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.82 E-value=2.1e-19 Score=134.56 Aligned_cols=107 Identities=20% Similarity=0.338 Sum_probs=91.3
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
.|.+..++.|... .+.|.|+|+ +|++|+ +..+.+| ||+ .++||+++++++||+
T Consensus 2 ~G~l~~~l~~~~~-------------~~~L~V~vi-~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 67 (125)
T cd04031 2 TGRIQIQLWYDKV-------------TSQLIVTVL-QARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPE 67 (125)
T ss_pred cEEEEEEEEEeCC-------------CCEEEEEEE-EecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCc
Confidence 4788888888876 789999999 999998 6778899 998 367899999999999
Q ss_pred cCcEEEEEecC----CCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 94 FGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 94 wne~f~f~v~~----~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
|||+|.|.+.. ....|.|+|||++ ..+++++||++.++|++.. ......|++|+
T Consensus 68 wne~f~f~~~~~~~l~~~~l~~~V~d~~-~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 68 WNQTFEYSNVRRETLKERTLEVTVWDYD-RDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred cccEEEEcccCHHHhCCCEEEEEEEeCC-CCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 99999998544 2578999999999 7888999999999999833 34557899884
No 71
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.82 E-value=1.5e-19 Score=134.95 Aligned_cols=106 Identities=19% Similarity=0.370 Sum_probs=93.2
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--c-CCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--Q-PHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~-~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
|.++.+++|..+ .+.|.|+|+ +|+||+ + ..+.+| ||+ ...+|++++++.||+
T Consensus 1 G~i~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (123)
T cd08521 1 GEIEFSLSYNYK-------------TGSLEVHIK-ECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66 (123)
T ss_pred CeEEEEEEEeCC-------------CCEEEEEEE-EecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence 567788888766 789999999 999999 5 578899 998 357899999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
|||+|.|.++.. ...|.|+|||.+ ..+++++||++.++++++......+.|++|
T Consensus 67 wne~f~f~i~~~~l~~~~l~i~v~d~~-~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 67 FNETLKYHISKSQLETRTLQLSVWHHD-RFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEeCC-CCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999998774 578999999999 788899999999999999877778899986
No 72
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.82 E-value=1.2e-19 Score=138.99 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=89.8
Q ss_pred EEEEEEEcccCccccCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEec-------------CC---Cc
Q psy3954 55 TLRIRIQYTADHILQPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIP-------------RR---FR 107 (268)
Q Consensus 55 ~L~V~v~~~a~~L~~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~-------------~~---~~ 107 (268)
.|.|+|+ +|++|+..+|.+| ||+ ...||+++++|+||+|||+|.|.+. .+ ..
T Consensus 1 kL~V~Vi-~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 1 KLSVRVI-ECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred CEEEEEE-eCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 3899999 9999996678899 998 2568999999999999999999984 11 36
Q ss_pred EEEEEEEeCCCCCCCCceeEEEEEeccccccc-cCccceecCcccCCCc----------ccceEEEEEE
Q psy3954 108 HLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI-SNKEHWFPLTPVTQDS----------EVQGKIQIGV 165 (268)
Q Consensus 108 ~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~----------~~~G~i~v~l 165 (268)
.|.|.|||++ ..++|++||++.|++..+... .....|++|.+.+... ...|.|.+.+
T Consensus 80 ~L~i~V~d~~-~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 80 ELRVDLWHAS-MGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEcCC-CCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 7999999999 778899999999999999876 5678999998765332 2356666654
No 73
>KOG1030|consensus
Probab=99.82 E-value=7.3e-20 Score=138.57 Aligned_cols=85 Identities=27% Similarity=0.383 Sum_probs=80.5
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR 124 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~ 124 (268)
.|.|+|+|. +|.+|. |..+++| ||. ++.||+++++++||+|||+|.|.+.+....|.++|||+| .+++||
T Consensus 5 vGLL~v~v~-~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D-~fs~dD 82 (168)
T KOG1030|consen 5 VGLLRVRVK-RGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKD-TFSSDD 82 (168)
T ss_pred ceEEEEEEE-eecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCC-CCCccc
Confidence 689999999 999999 7778999 999 899999999999999999999999999999999999999 899999
Q ss_pred eeEEEEEeccccccc
Q psy3954 125 VLGKVTIQRSDLHRI 139 (268)
Q Consensus 125 ~iG~~~i~l~~l~~~ 139 (268)
+||.+.|++..+...
T Consensus 83 ~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEA 97 (168)
T ss_pred ccceeeeccHHHHHH
Confidence 999999999988744
No 74
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.82 E-value=1.7e-19 Score=134.73 Aligned_cols=108 Identities=22% Similarity=0.303 Sum_probs=95.7
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--c-CCCCCC-ceE--------EEeeecccCCCCCCccC
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--Q-PHYYED-LCT--------QILNSPSVNPVTSPFFG 95 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~-~~~~~d-yv~--------~~~~T~~~~~t~nP~wn 95 (268)
|.+..+++|... .+.|.|+|+ +|++|+ + ..+.+| ||+ ...+|+++++++||+||
T Consensus 1 G~l~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wn 66 (123)
T cd08390 1 GRLWFSVQYDLE-------------EEQLTVSLI-KARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFD 66 (123)
T ss_pred CEEEEEEEECCC-------------CCEEEEEEE-EecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccc
Confidence 577888888877 789999999 999999 5 577889 998 35789999999999999
Q ss_pred cEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 96 e~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
|.|.|.++.. ...|.|+|||.+ ..+++++||++.++|.++........|++|.|
T Consensus 67 e~f~f~i~~~~l~~~~l~i~v~d~~-~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 67 ETFVFQVSFKELQRRTLRLSVYDVD-RFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred eEEEEEcCHHHhcccEEEEEEEECC-cCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 9999998775 468999999999 67789999999999999998888889999864
No 75
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.82 E-value=2e-19 Score=134.31 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=90.4
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCC--C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLT--Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~--~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~ 233 (268)
|+|.+++.|. .+.|.|.|++|+||+ + ..+.+||||++++.+.. ....+|++++++.||+|||.|.|.++...+
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 8999999999 789999999999997 3 45679999999997433 345789999999999999999999877665
Q ss_pred ce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 234 IE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 234 ~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
.. |.|+|||++.. ++++||++.++|+++...
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~ 112 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLV 112 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecC
Confidence 43 99999999888 899999999999998763
No 76
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.81 E-value=3.4e-19 Score=132.65 Aligned_cols=106 Identities=21% Similarity=0.404 Sum_probs=92.3
Q ss_pred eEEEEEEEcccCccc--cC------CCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCC
Q psy3954 54 GTLRIRIQYTADHIL--QP------HYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDR 118 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~------~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~ 118 (268)
|.|.|+|+ +|++|+ +. .+.+| ||+ ..++|++++++.||+|||+|.|.+... .+.|.|+|||.+
T Consensus 1 g~l~v~v~-~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~- 78 (121)
T cd08391 1 GVLRIHVI-EAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED- 78 (121)
T ss_pred CeEEEEEE-EccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecC-
Confidence 57999999 999999 32 36789 999 789999999999999999999998764 789999999999
Q ss_pred CCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 119 TSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 119 ~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
.. +|++||++.++++++......+.|++|.+. ..|+|++++.|
T Consensus 79 ~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 79 PD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CC-CCCcEEEEEEEHHHhcccCccceEEECcCC-----CCceEEEEEeC
Confidence 66 889999999999999877778899999764 36999988764
No 77
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.81 E-value=1.4e-19 Score=137.11 Aligned_cols=110 Identities=28% Similarity=0.369 Sum_probs=93.6
Q ss_pred eEEEEEEEEc--CCeEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954 159 GKIQIGVLST--PTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 159 G~i~v~l~~~--~~~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~ 234 (268)
|+|++++.|. .+.|.|.|++|+||+. ..+.+||||++++...+....+++|++++++.||.|||+|.|.++...+.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 8999999997 6899999999999974 46779999999998554445678999999999999999999998876643
Q ss_pred e--EEEEEEecCCC-CCeeeEEEEEeCCccCCCCCCC
Q psy3954 235 E--LVVSLHHDISG-LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 235 ~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~~~w 268 (268)
. |.|+|||.+.. ++++||++.+++++...+..+|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W 117 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHW 117 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHH
Confidence 3 99999999987 8999999999999944454444
No 78
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.81 E-value=5.1e-19 Score=137.47 Aligned_cols=113 Identities=21% Similarity=0.348 Sum_probs=95.9
Q ss_pred CeEEEEEEEcccCccc--c------------------------------CCCCCC-ceE------EEeeecccCCCCCCc
Q psy3954 53 LGTLRIRIQYTADHIL--Q------------------------------PHYYED-LCT------QILNSPSVNPVTSPF 93 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~------------------------------~~~~~d-yv~------~~~~T~~~~~t~nP~ 93 (268)
.|.|.|+|+ +|++|+ | ..|.+| ||+ ...||++++++.||+
T Consensus 6 hG~L~v~I~-eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIY-EADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEE-EeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 489999999 999998 4 246689 999 457999999999999
Q ss_pred cCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC-cccceEEEEEEEEc
Q psy3954 94 FGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD-SEVQGKIQIGVLST 168 (268)
Q Consensus 94 wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~v~l~~~ 168 (268)
|||+|.|.+....+.|.|.|+|.| ..+ +++||++.++++++..+...+.|++|.+.... ....|+|++++.|.
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d-~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDND-VVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCC-CcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 999999998877788999999999 665 57999999999999887888999999764322 23468999999883
No 79
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.81 E-value=4e-19 Score=134.47 Aligned_cols=106 Identities=29% Similarity=0.349 Sum_probs=90.3
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC--cceeeeceeccCCCCCccceEEEEEccCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN--KSDVQKSKVKKKSHSPVFNESFMFDRSLG 231 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~--~~~~~kT~v~~~t~nP~~ne~f~f~v~~~ 231 (268)
.|+|.+++.|. .+.|.|.|++|++|+ +..|.+||||++++..... ...+++|+++++++||+|||.|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 59999999999 489999999999997 4567899999999973332 24578999999999999999999998753
Q ss_pred CC--c--eEEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 232 DP--I--ELVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 232 ~~--~--~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
.. . .|.|+|||++.. ++++||++.++|+++..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 22 2 399999999988 79999999999998864
No 80
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.81 E-value=1.2e-19 Score=137.25 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=90.5
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--c--CCCCCC-ceE----------EEeeecccCCCCCC
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--Q--PHYYED-LCT----------QILNSPSVNPVTSP 92 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~--~~~~~d-yv~----------~~~~T~~~~~t~nP 92 (268)
|.+..++.|... .+.|.|+|+ +|+||+ + ..+.+| ||+ .+.||+++++++||
T Consensus 2 Gel~~sL~Y~~~-------------~~~L~V~V~-karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nP 67 (138)
T cd08407 2 GEVLLSISYLPA-------------ANRLLVVVI-KAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINP 67 (138)
T ss_pred CEEEEEEEEeCC-------------CCeEEEEEE-EecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCC
Confidence 788899999877 789999999 999998 4 235589 999 46799999999999
Q ss_pred ccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954 93 FFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 93 ~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
+|||.|.|.++.+ ...|.|+|||.| .++++++||++.+++.. .+.+.++|..+
T Consensus 68 vfNE~f~F~v~~~~L~~~~L~~~V~d~d-~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 68 VWNEMIMFELPSELLAASSVELEVLNQD-SPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred ccccEEEEECCHHHhCccEEEEEEEeCC-CCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 9999999999886 678999999999 78999999999999874 45567788776
No 81
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.81 E-value=5.6e-19 Score=132.59 Aligned_cols=107 Identities=21% Similarity=0.422 Sum_probs=93.0
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC------
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS------ 120 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~------ 120 (268)
.|+|+|+ +|++|+ +..+.+| ||+ ...+|+++++++||.|||+|.|.+......|.|+|||+| ..
T Consensus 2 ~L~V~vi-~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d-~~~~~~~~ 79 (127)
T cd04027 2 KISITVV-CAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDED-DDIKSRLK 79 (127)
T ss_pred eEEEEEE-ECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECC-CCcccccc
Confidence 6899999 999999 7778899 998 678999999999999999999998766678999999998 32
Q ss_pred -----CCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEE
Q psy3954 121 -----KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGV 165 (268)
Q Consensus 121 -----~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l 165 (268)
+.+++||++.+++.++. ...+.|+.|.+.+.....+|+|++++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 46899999999999875 44679999998876677899999874
No 82
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.81 E-value=2.8e-19 Score=136.87 Aligned_cols=94 Identities=46% Similarity=0.698 Sum_probs=80.8
Q ss_pred eEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEcc-------------CCCCce--
Q psy3954 171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS-------------LGDPIE-- 235 (268)
Q Consensus 171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~-------------~~~~~~-- 235 (268)
+|.|.|++|+||+..+|.+||||+|++.....+..+++|+++++++||+|||+|.|.+. ..+++.
T Consensus 1 kL~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 1 KLSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred CEEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 48999999999987778899999999985444446789999999999999999999984 234443
Q ss_pred EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 236 LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 236 l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
|.|.|||++.. ++++||++.|++.++..+
T Consensus 81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~ 110 (148)
T cd04010 81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQ 110 (148)
T ss_pred EEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence 99999999988 999999999999999864
No 83
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.80 E-value=7.3e-19 Score=137.08 Aligned_cols=120 Identities=17% Similarity=0.231 Sum_probs=98.0
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w 94 (268)
|.+..++.|..+.. ..+...+....+.|.|+|+ +|+||+ +..+.+| ||+ .++||+++++++||.|
T Consensus 2 G~l~~~l~y~~~~~-~~~~~~~~~~~g~L~V~Vi-~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~W 79 (162)
T cd04020 2 GELKVALKYVPPES-EGALKSKKPSTGELHVWVK-EAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVW 79 (162)
T ss_pred ceEEEEEEecCccc-cccccccCCCCceEEEEEE-eeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCC
Confidence 67888888876532 2222334556789999999 999999 6678899 998 4689999999999999
Q ss_pred CcEEEEEec-CC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 95 GEEFQFDIP-RR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 95 ne~f~f~v~-~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
||+|.|.+. .. ...|.|+|||++ .+++|++||++.+++.++......+.|+.+..
T Consensus 80 nE~f~f~~~~~~~l~~~~L~i~V~d~d-~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 80 NHTFVYDGVSPEDLSQACLELTVWDHD-KLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCEEEEecCCHHHhCCCEEEEEEEeCC-CCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 999999843 32 468999999999 78889999999999999987667788888854
No 84
>KOG0696|consensus
Probab=99.80 E-value=5.5e-20 Score=157.04 Aligned_cols=109 Identities=24% Similarity=0.343 Sum_probs=101.7
Q ss_pred cccceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC
Q psy3954 155 SEVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD 232 (268)
Q Consensus 155 ~~~~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~ 232 (268)
.+.+|+|.+.+......|.|.|.+|+||. |.+|.+||||++.|.+++....++||++++.++||+|||+|+|.+...+
T Consensus 165 tE~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D 244 (683)
T KOG0696|consen 165 TERRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD 244 (683)
T ss_pred hhhcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc
Confidence 55689999999999999999999999994 8899999999999998777778899999999999999999999998888
Q ss_pred Cce-EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 233 PIE-LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 233 ~~~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
.+. |.|+|||||+. +++++|..+++++++..
T Consensus 245 kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K 277 (683)
T KOG0696|consen 245 KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK 277 (683)
T ss_pred ccceeEEEEecccccccccccceecccHHHHhh
Confidence 877 99999999999 99999999999999876
No 85
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.80 E-value=8.3e-19 Score=130.98 Aligned_cols=110 Identities=25% Similarity=0.344 Sum_probs=92.3
Q ss_pred ceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCCC
Q psy3954 158 QGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLGD 232 (268)
Q Consensus 158 ~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~~ 232 (268)
.|+|.+++.|. .+.|.|+|++|++|+ +..+.+||||++.+..+.....+.+|++++++.||.|||.|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 48999999997 679999999999997 44577999999999755444567899999999999999999996 44344
Q ss_pred Cc--eEEEEEEecCCCCCeeeEEEEEeCCccCCCCCC
Q psy3954 233 PI--ELVVSLHHDISGLNVFLGEVHIPLNNKETSSSW 267 (268)
Q Consensus 233 ~~--~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~~~~ 267 (268)
+. .|.|+|||++..++++||++.++++++..+..+
T Consensus 81 ~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~ 117 (123)
T cd04035 81 IQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTK 117 (123)
T ss_pred hCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcce
Confidence 43 399999998876889999999999999876543
No 86
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.79 E-value=5e-19 Score=128.72 Aligned_cols=90 Identities=12% Similarity=0.230 Sum_probs=77.3
Q ss_pred CeEEEEEceecCCCCC-----C-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-EEEEEEe
Q psy3954 170 TSLMVNVNEASGLTQV-----N-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-LVVSLHH 242 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~-----~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l~i~V~d 242 (268)
|.|.|+|++|++|+.. . +.+||||++.+. ..++||+++++++||+|||.|.|.+.....+. |.|+|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEE
Confidence 5789999999999742 1 348999999985 45679999999999999999999987655444 9999999
Q ss_pred cCCC-CCeeeEEEEEeCCccCCC
Q psy3954 243 DISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 243 ~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
++.. ++++||++.++|+++..+
T Consensus 76 ~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred CCCCCCCcceEEEEEEHHHHHhh
Confidence 9988 999999999999998654
No 87
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.79 E-value=4.5e-18 Score=160.06 Aligned_cols=208 Identities=20% Similarity=0.283 Sum_probs=159.8
Q ss_pred ccCCCeEEEEEEEcccCccc--c--CCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCC
Q psy3954 49 IIQDLGTLRIRIQYTADHIL--Q--PHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRD 117 (268)
Q Consensus 49 ~~~~~~~L~V~v~~~a~~L~--~--~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d 117 (268)
...+.|.|.|+|. +|++|. + .++..| |++ ...||+++++++||+|||+|...+..-++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~-sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIK-SAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEe-eccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEecc
Confidence 4566899999999 999999 4 478899 998 567999999999999999999998887999999999988
Q ss_pred CCCCCCceeEEEEEeccccccccCcc--------------------ceecCcccCCC--------cc-cceEEEEEEEEc
Q psy3954 118 RTSKTDRVLGKVTIQRSDLHRISNKE--------------------HWFPLTPVTQD--------SE-VQGKIQIGVLST 168 (268)
Q Consensus 118 ~~~~~d~~iG~~~i~l~~l~~~~~~~--------------------~w~~L~~~~~~--------~~-~~G~i~v~l~~~ 168 (268)
...+|+.+|.+.++|..+....... +||+.-..+.. .+ ..|-+.+.+.-.
T Consensus 510 -~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~ 588 (1227)
T COG5038 510 -SFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREV 588 (1227)
T ss_pred -ccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeecc
Confidence 6888999999999998776432211 23322111000 00 113233222210
Q ss_pred --------------------------------------------------------------------------------
Q psy3954 169 -------------------------------------------------------------------------------- 168 (268)
Q Consensus 169 -------------------------------------------------------------------------------- 168 (268)
T Consensus 589 ~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li~~ 668 (1227)
T COG5038 589 KALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLIDR 668 (1227)
T ss_pred ccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhhhc
Confidence
Q ss_pred -----------------------------------------CCeEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcce
Q psy3954 169 -----------------------------------------PTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSD 205 (268)
Q Consensus 169 -----------------------------------------~~~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~ 205 (268)
.|.++|.|..|.+|.+ ..+.+|||+++.+. ...
T Consensus 669 t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~~ 744 (1227)
T COG5038 669 TLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NLV 744 (1227)
T ss_pred cccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec----cee
Confidence 6789999999999973 46679999999987 367
Q ss_pred eeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 206 VQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 206 ~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
+++|-....++||.||+....++..+ .+.|.+.++|.... .|+.||++.+..++...
T Consensus 745 k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~ 802 (1227)
T COG5038 745 KYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEESGDDRNLGEVNINVSNVSK 802 (1227)
T ss_pred EEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhccccceeceeeeeeeeeee
Confidence 89999999999999999887776542 33488889998877 99999999999887644
No 88
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.79 E-value=1.3e-18 Score=129.94 Aligned_cols=107 Identities=18% Similarity=0.318 Sum_probs=90.6
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCC--Cc
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT--DR 124 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~--d~ 124 (268)
|+|+|+ +|++|+ +..+.+| ||+ +.+||+++++++||.|||+|.|.++. .+.|.|+|||++ ..++ |+
T Consensus 2 l~v~v~-~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~-~~~~~~d~ 78 (123)
T cd08382 2 VRLTVL-CADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQK-KFKKKDQG 78 (123)
T ss_pred eEEEEE-EecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECC-CCCCCCCc
Confidence 789999 999998 6778899 998 57899999999999999999999977 589999999999 6654 58
Q ss_pred eeEEEEEecccccccc-CccceecCcccCC--CcccceEEEEEE
Q psy3954 125 VLGKVTIQRSDLHRIS-NKEHWFPLTPVTQ--DSEVQGKIQIGV 165 (268)
Q Consensus 125 ~iG~~~i~l~~l~~~~-~~~~w~~L~~~~~--~~~~~G~i~v~l 165 (268)
+||++.+++.++.... ....|++|.+... .....|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999987544 3478999976554 344589998875
No 89
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.79 E-value=4.5e-19 Score=134.69 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=93.9
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
+|.++.+++|... .+.|.|+|+ +|+||+ + .+.+| ||+ .+++|+++++++||+
T Consensus 1 ~G~i~~sl~y~~~-------------~~~L~V~V~-~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~ 65 (137)
T cd08409 1 LGDIQISLTYNPT-------------LNRLTVVVL-RARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPS 65 (137)
T ss_pred CcEEEEEEEECCC-------------CCeEEEEEE-EecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCc
Confidence 5889999999977 789999999 999999 6 77799 999 366899999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
|||+|.|.++.+ ...|.|+|||.+ ..+++++||++.++......+.+.++|..+.
T Consensus 66 fnE~F~f~i~~~~l~~~~L~~~V~~~~-~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 66 FNESFSFKVTSRQLDTASLSLSVMQSG-GVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred ccceEEEECCHHHhCccEEEEEEEeCC-CCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 999999999765 578999999999 7889999999999977666677788898764
No 90
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.79 E-value=1.7e-18 Score=130.78 Aligned_cols=106 Identities=27% Similarity=0.369 Sum_probs=92.9
Q ss_pred ceEEEEEEEEcCCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce
Q psy3954 158 QGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE 235 (268)
Q Consensus 158 ~G~i~v~l~~~~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~ 235 (268)
+|+|.+++.|..+.|.|+|++|++|+ +..+.+||||++.+...+.....++|++++++.||.|||+|.|.+...+...
T Consensus 1 ~g~~~~~~~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~ 80 (131)
T cd04026 1 RGRIYLKISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDR 80 (131)
T ss_pred CcEEEEEEEECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCC
Confidence 49999999999999999999999997 4567799999999975444456789999999999999999999987654444
Q ss_pred -EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 236 -LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 236 -l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
|.|+|||++.. ++++||++.++++++..
T Consensus 81 ~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~ 110 (131)
T cd04026 81 RLSIEVWDWDRTTRNDFMGSLSFGVSELIK 110 (131)
T ss_pred EEEEEEEECCCCCCcceeEEEEEeHHHhCc
Confidence 99999999887 89999999999998864
No 91
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.79 E-value=2.3e-18 Score=130.23 Aligned_cols=106 Identities=25% Similarity=0.377 Sum_probs=91.8
Q ss_pred CeEEEEEEEcccCccc--cC----------CCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEE
Q psy3954 53 LGTLRIRIQYTADHIL--QP----------HYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYA 113 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~----------~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v 113 (268)
.|.|+|+|+ +|++|+ +. .+.+| ||+ ...+|+++++++||.|||+|.|.++. ...|.|.|
T Consensus 3 ~g~l~V~v~-~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v 80 (132)
T cd04014 3 TGTLKIKIC-EAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTV 80 (132)
T ss_pred ceEEEEEEE-EecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEE
Confidence 478999999 999998 43 25789 999 45799999999999999999999974 48999999
Q ss_pred EeCCCCCCCCceeEEEEEecccccc--ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 114 YDRDRTSKTDRVLGKVTIQRSDLHR--ISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 114 ~d~d~~~~~d~~iG~~~i~l~~l~~--~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
||.+ ..+++++||++.++|+++.. ....+.|++|.+ .|+|++++.|.
T Consensus 81 ~d~~-~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~ 129 (132)
T cd04014 81 FHDA-AIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELK 129 (132)
T ss_pred EeCC-CCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEe
Confidence 9999 78889999999999999886 456789999973 69999998874
No 92
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.79 E-value=1.8e-18 Score=131.43 Aligned_cols=116 Identities=19% Similarity=0.322 Sum_probs=96.0
Q ss_pred ccCCCeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCC
Q psy3954 49 IIQDLGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSK 121 (268)
Q Consensus 49 ~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~ 121 (268)
..+....|.|.|+ +|++||. ..+ ||. ..+||+++.++.||.|+|+|.|........|.|.|++.+...+
T Consensus 6 ~~R~~~sL~v~V~-EAk~Lp~---~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 6 SRRTENSLKLWII-EAKGLPP---KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK 81 (146)
T ss_pred ceEEEEEEEEEEE-EccCCCC---cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence 3455688999999 9999982 236 998 5679999999999999999999866666889999987652232
Q ss_pred ---CCceeEEEEEeccccccccCccceecCcccCCCc--------ccceEEEEEEEEc
Q psy3954 122 ---TDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDS--------EVQGKIQIGVLST 168 (268)
Q Consensus 122 ---~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~--------~~~G~i~v~l~~~ 168 (268)
++.+||.+.||++++..+...+.||+|.+.+... ...+.|++++.|.
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~ 139 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ 139 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence 5789999999999999888899999998777553 4457999999886
No 93
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.79 E-value=6.7e-19 Score=129.03 Aligned_cols=96 Identities=20% Similarity=0.309 Sum_probs=80.9
Q ss_pred CeEEEEEceecCCC--CCC-CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCC---ceEEEEEEec
Q psy3954 170 TSLMVNVNEASGLT--QVN-GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP---IELVVSLHHD 243 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~---~~l~i~V~d~ 243 (268)
|.|.|+|++|++|+ +.. |.+||||++++...+ ....+|+++++++||+|||.|.|.+...++ ..|.|+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~ 78 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS 78 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence 67999999999997 455 789999999986322 346899999999999999999998866543 2399999999
Q ss_pred CCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954 244 ISG-LNVFLGEVHIPLNNKETSSSW 267 (268)
Q Consensus 244 ~~~-~~~~lG~~~l~l~~~~~~~~~ 267 (268)
+.. ++++||++.+++.++...+.|
T Consensus 79 d~~~~dd~lG~~~i~l~~l~~~~~~ 103 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELIEDRNW 103 (111)
T ss_pred CCCCCCCcceEEEEEHHHHhcCCCC
Confidence 998 899999999999999766555
No 94
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=5.2e-18 Score=127.14 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=92.1
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR 124 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~ 124 (268)
...|+|+|+ +|++|+ +..|.+| ||+ +..||++++++.||+|||.|.|.+......|.|+|||++ ..+ |+
T Consensus 2 ~~~~~V~v~-~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~-~~~-d~ 78 (126)
T cd04046 2 QVVTQVHVH-SAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSN-LLC-DE 78 (126)
T ss_pred cEEEEEEEE-eCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECC-CCC-CC
Confidence 368999999 999998 6788999 999 788999999999999999999998877889999999999 564 88
Q ss_pred eeEEEEEeccccccccCccceecCccc--CCCcccceEEEEEEEE
Q psy3954 125 VLGKVTIQRSDLHRISNKEHWFPLTPV--TQDSEVQGKIQIGVLS 167 (268)
Q Consensus 125 ~iG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~~G~i~v~l~~ 167 (268)
+||++.+++.++. .....|++|... .......|+|.+++.+
T Consensus 79 ~lG~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~ 121 (126)
T cd04046 79 FLGQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTS 121 (126)
T ss_pred ceEEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEE
Confidence 9999999998754 344567777532 2445678999988765
No 95
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.78 E-value=3.3e-18 Score=126.47 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=76.0
Q ss_pred CeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccC-CCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954 170 TSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKK-SHSPVFNESFMFDRSLGDPIELVVSLHHDISG- 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~- 246 (268)
|.|.|+|++|++|++. .|.+||||++.+. ..+.+|++..+ +.||+|||+|.|.+... ...|.|+|||+|.+
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 7899999999999754 4889999999997 56779999875 79999999999998653 34599999999999
Q ss_pred CCeeeEEEEEeCC-ccCCC
Q psy3954 247 LNVFLGEVHIPLN-NKETS 264 (268)
Q Consensus 247 ~~~~lG~~~l~l~-~~~~~ 264 (268)
+|++||++.+++. .+..+
T Consensus 76 ~dd~iG~~~i~l~~~~~~g 94 (121)
T cd04016 76 MDERIAWTHITIPESVFNG 94 (121)
T ss_pred CCceEEEEEEECchhccCC
Confidence 8999999999996 45443
No 96
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.78 E-value=1.1e-18 Score=132.53 Aligned_cols=108 Identities=20% Similarity=0.302 Sum_probs=93.0
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
+|.++.+++|... .+.|.|+|+ +|++|+ +..+.+| ||+ ...+|+++++++||.
T Consensus 1 ~G~l~~~l~y~~~-------------~~~l~V~Vi-~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 66 (136)
T cd08402 1 LGDICFSLRYVPT-------------AGKLTVVIL-EAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPY 66 (136)
T ss_pred CcEEEEEeEEcCC-------------CCeEEEEEE-EeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCc
Confidence 5888999999877 789999999 999999 7788999 998 256799999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV 151 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 151 (268)
|||+|.|.++.. ...|.|+|||.+ .+++|++||++.+++... +.+..+|+++...
T Consensus 67 wne~f~f~i~~~~l~~~~l~~~v~d~~-~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 67 YNESFSFEVPFEQIQKVHLIVTVLDYD-RIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred ccceEEEECCHHHhCCCEEEEEEEeCC-CCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 999999998765 358999999999 788999999999999754 4567889887543
No 97
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.78 E-value=4.8e-18 Score=127.40 Aligned_cols=105 Identities=20% Similarity=0.363 Sum_probs=90.1
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCC
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKT 122 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~ 122 (268)
.|+|+|+ +|++|+ +..+.+| ||+ ..+||+++++++||.|||+|.|.+... ...|.|+|||.+ ..++
T Consensus 2 ~~~V~v~-~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d-~~~~ 79 (126)
T cd04043 2 LFTIRIV-RAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRS-FVGK 79 (126)
T ss_pred EEEEEEE-EeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECC-CCCC
Confidence 5889999 999999 6778899 998 357999999999999999999998885 688999999999 7778
Q ss_pred CceeEEEEEecccccc---ccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 123 DRVLGKVTIQRSDLHR---ISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 123 d~~iG~~~i~l~~l~~---~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
+++||++.++++++.. +...+.|++|.+ .|++++.+.+.
T Consensus 80 ~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~ 121 (126)
T cd04043 80 HDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSME 121 (126)
T ss_pred CceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEe
Confidence 9999999999987643 234678999965 58888887764
No 98
>KOG1011|consensus
Probab=99.78 E-value=7.2e-18 Score=150.02 Aligned_cols=113 Identities=19% Similarity=0.384 Sum_probs=97.0
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC----
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS---- 120 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~---- 120 (268)
...++++|+ +|.+|. |..|.+| ||. .+.||+++-..+||+|||.|+|+..+....+.+.|||.|..+
T Consensus 294 sakitltvl-caqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 294 SAKITLTVL-CAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred ceeeEEeee-ecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHH
Confidence 467899999 999998 8999999 999 577899999999999999999999999999999999998322
Q ss_pred ------CCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 121 ------KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 121 ------~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
..|+|+|+..|.+..+. .+.+-|+.|..+...+.+.|-|++.+..+
T Consensus 373 rqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEE
Confidence 36899999999888775 56889999998887777788776655543
No 99
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=3.1e-18 Score=124.21 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=80.9
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCcee
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVL 126 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~i 126 (268)
|.|+|+ +|++|+ +..+.+| ||+ +.++|++++++.||+|||+|.|.+... .+.|.|+|+|.+ . |++|
T Consensus 2 L~V~v~-~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~-~---~~~i 76 (105)
T cd04050 2 LFVYLD-SAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK-T---GKSL 76 (105)
T ss_pred EEEEEe-eecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC-C---CCcc
Confidence 789999 999999 6678899 999 789999999999999999999999875 688999999999 4 7899
Q ss_pred EEEEEecccccccc--CccceecCccc
Q psy3954 127 GKVTIQRSDLHRIS--NKEHWFPLTPV 151 (268)
Q Consensus 127 G~~~i~l~~l~~~~--~~~~w~~L~~~ 151 (268)
|++.++|.++.... ..+.|++|.+.
T Consensus 77 G~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 77 GSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEEHHHhhccccceeeeeEecCCC
Confidence 99999999987543 46899999753
No 100
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=7.3e-18 Score=125.97 Aligned_cols=110 Identities=16% Similarity=0.215 Sum_probs=91.7
Q ss_pred eEEEEEEEcccCccc--c-CCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCC
Q psy3954 54 GTLRIRIQYTADHIL--Q-PHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT 122 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~-~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~ 122 (268)
|.|.|+|+ +|++|+ + ..+.+| ||+ ..++|++++++.||.|||.|.|.+....+.|.|+|||.+ ..++
T Consensus 2 g~l~v~v~-~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~-~~~~ 79 (124)
T cd04044 2 GVLAVTIK-SARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFN-DKRK 79 (124)
T ss_pred eEEEEEEE-cccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecC-CCCC
Confidence 68999999 999998 3 346789 998 368999999999999999999999866889999999999 7788
Q ss_pred CceeEEEEEeccccccccCcc-ceecCcccCCCcccceEEEEEEEEc
Q psy3954 123 DRVLGKVTIQRSDLHRISNKE-HWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 123 d~~iG~~~i~l~~l~~~~~~~-~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
|++||++.++++++......+ .|..+.. .....|+|++++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQENLTKNLLR---NGKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCccccCcchhhhc---CCccceEEEEEEEeC
Confidence 999999999999998666554 3444442 334579999999884
No 101
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=4.4e-18 Score=125.25 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=79.8
Q ss_pred eEEEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeE
Q psy3954 54 GTLRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLG 127 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG 127 (268)
+.|.|+|+ +|++|++.. ..| ||. ++.+|++.++ .||.|||+|.|.+......|.|+|||.| .+ .|++||
T Consensus 2 ~~L~V~Vv-~Ar~L~~~~-~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd-~~-~DD~lG 76 (127)
T cd08394 2 SLLCVLVK-KAKLDGAPD-KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKG-LI-WDTLVG 76 (127)
T ss_pred ceEEEEEE-EeeCCCCCC-CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCC-Cc-CCCceE
Confidence 57999999 999998433 457 999 7789999987 5999999999999877677999999999 55 799999
Q ss_pred EEEEeccccccccCc--cceecCccc
Q psy3954 128 KVTIQRSDLHRISNK--EHWFPLTPV 151 (268)
Q Consensus 128 ~~~i~l~~l~~~~~~--~~w~~L~~~ 151 (268)
++.++|.++...... ..|++|.|.
T Consensus 77 ~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 77 TVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEhHHcccCCCCCCCccEecChH
Confidence 999999998855544 899999864
No 102
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.77 E-value=2.1e-18 Score=126.36 Aligned_cols=91 Identities=20% Similarity=0.302 Sum_probs=79.2
Q ss_pred eEEEEEEEcccCccc--cCC-CCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954 54 GTLRIRIQYTADHIL--QPH-YYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD 117 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~~-~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d 117 (268)
|.|+|+|+ +|++|+ +.. +.+| ||+ ..++|+++++|+||+|||+|.|.+... ...|.|+|||+|
T Consensus 1 G~L~V~v~-~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIH-RATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEE-EeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 57999999 999999 666 8899 998 357999999999999999999987653 478999999999
Q ss_pred CCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
..++|++||++.++++++. ....|++++
T Consensus 80 -~~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 80 -RFTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred -CCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 7888999999999999997 345777764
No 103
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.77 E-value=2.5e-18 Score=130.62 Aligned_cols=106 Identities=19% Similarity=0.261 Sum_probs=91.0
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w 94 (268)
|.+..+++|... .+.|.|+|+ +|++|+ +..|.+| ||+ ...||+++++++||.|
T Consensus 2 G~l~~~l~y~~~-------------~~~L~V~vi-~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w 67 (136)
T cd08404 2 GELLLSLCYQPT-------------TNRLTVVVL-KARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVF 67 (136)
T ss_pred CeEEEEEEEeCC-------------CCeEEEEEE-EeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCcc
Confidence 567777777655 678999999 999998 7788999 998 2568999999999999
Q ss_pred CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
||+|.|.++.. ...|.|+|||++ .++++++||++.+++.. .+.....|+++..
T Consensus 68 ~e~F~f~v~~~~~~~~~l~~~v~d~d-~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 68 NESFVFDIPSEELEDISVEFLVLDSD-RVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CceEEEECCHHHhCCCEEEEEEEECC-CCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 99999998764 567999999999 78899999999999988 3566789998854
No 104
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.77 E-value=2.2e-18 Score=129.23 Aligned_cols=86 Identities=30% Similarity=0.444 Sum_probs=75.2
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC-----CCceEEEEEEecC
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-----DPIELVVSLHHDI 244 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-----~~~~l~i~V~d~~ 244 (268)
+.|+|++|+||+ +..|.+||||++.+. ..+++|++++++.||+|||.|.|.++.. ....|.|+|||++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 479999999997 557789999999996 5678999999999999999999998762 2223999999999
Q ss_pred CC-CCeeeEEEEEeCCccC
Q psy3954 245 SG-LNVFLGEVHIPLNNKE 262 (268)
Q Consensus 245 ~~-~~~~lG~~~l~l~~~~ 262 (268)
.+ ++++||++.|+++++.
T Consensus 76 ~~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 76 LLGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred ccCCCceeEEEEEEHHHhh
Confidence 88 8999999999999986
No 105
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.76 E-value=2.4e-18 Score=130.78 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=91.5
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
.|.+..++.|... .+.|.|+|+ +|++|+ +..+.+| ||+ ...||++++++.||.
T Consensus 1 ~G~l~~sl~y~~~-------------~~~L~v~vi-~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (136)
T cd08405 1 RGELLLSLCYNPT-------------ANRITVNII-KARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66 (136)
T ss_pred CcEEEEEEEEcCC-------------CCeEEEEEE-EeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence 3778888888866 789999999 999998 6788899 998 246899999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
|||+|.|.++.+ ...|.|+|||.+ ..++|++||++.+++.+. +...+.|+++..
T Consensus 67 wne~F~f~i~~~~~~~~~l~~~v~d~~-~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 67 FNESFIFNIPLERLRETTLIITVMDKD-RLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEECC-CCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 999999998754 468999999999 788999999999999876 555778887643
No 106
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.76 E-value=2.9e-18 Score=130.01 Aligned_cols=108 Identities=19% Similarity=0.366 Sum_probs=88.9
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w 94 (268)
|.+..+++|... .+.|.|+|+ +|++|+ +..|.+| ||+ ...+|+++++|+||+|
T Consensus 1 G~i~~~l~y~~~-------------~~~L~V~vi-~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~w 66 (135)
T cd08410 1 GELLLSLNYLPS-------------AGRLNVDII-RAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFY 66 (135)
T ss_pred CcEEEEEEECCC-------------CCeEEEEEE-EecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCcc
Confidence 567888888876 789999999 999998 7778999 998 3468999999999999
Q ss_pred CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954 95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV 151 (268)
Q Consensus 95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 151 (268)
||+|.|.++.+ ...|.|+|||++ ..+++++||++.+...... ....+.|..+.+.
T Consensus 67 nE~F~f~i~~~~l~~~~l~~~V~d~d-~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~ 124 (135)
T cd08410 67 NESFSFKVPQEELENVSLVFTVYGHN-VKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNS 124 (135)
T ss_pred ceeEEEeCCHHHhCCCEEEEEEEeCC-CCCCCcEEEEEEEcCccCC-chHHHHHHHHHhC
Confidence 99999998765 347999999999 7889999999987653332 2346788887543
No 107
>KOG1030|consensus
Probab=99.76 E-value=1.7e-18 Score=131.12 Aligned_cols=89 Identities=25% Similarity=0.322 Sum_probs=78.9
Q ss_pred CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954 169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG 246 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~ 246 (268)
.|-|.|.|++|.||. |..+++||||.+.++ .++.+|+++.+++||+|||.|+|.+.... ..|.++|||+|.+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf~v~d~~-~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTFTVKDPN-TPLKVTVYDKDTF 78 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEEEecCCC-ceEEEEEEeCCCC
Confidence 367899999999996 556889999999998 78899999999999999999999886432 2399999999999
Q ss_pred -CCeeeEEEEEeCCccCC
Q psy3954 247 -LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 247 -~~~~lG~~~l~l~~~~~ 263 (268)
+||+||++.|++..+..
T Consensus 79 s~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLE 96 (168)
T ss_pred CcccccceeeeccHHHHH
Confidence 99999999999988765
No 108
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.76 E-value=3.1e-18 Score=125.28 Aligned_cols=92 Identities=24% Similarity=0.439 Sum_probs=81.5
Q ss_pred EEEEEEcccCccc--c-CCCCCC-ceE-----EEeeecccCCCCCCcc-CcEEEEEecCC---CcEEEEEEEeCCCCCCC
Q psy3954 56 LRIRIQYTADHIL--Q-PHYYED-LCT-----QILNSPSVNPVTSPFF-GEEFQFDIPRR---FRHLAVYAYDRDRTSKT 122 (268)
Q Consensus 56 L~V~v~~~a~~L~--~-~~~~~d-yv~-----~~~~T~~~~~t~nP~w-ne~f~f~v~~~---~~~l~~~v~d~d~~~~~ 122 (268)
|.|+|+ +|++|+ + ..+.+| ||+ ..+||+++++++||.| ||+|.|.++.. ...|.|+|||++ ..++
T Consensus 1 l~V~v~-~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d-~~~~ 78 (110)
T cd08688 1 LKVRVV-AARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD-TYSA 78 (110)
T ss_pred CEEEEE-EEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC-CCCC
Confidence 579999 999998 4 367899 999 7899999999999999 99999998875 478999999999 7889
Q ss_pred CceeEEEEEecccccc---ccCccceecCc
Q psy3954 123 DRVLGKVTIQRSDLHR---ISNKEHWFPLT 149 (268)
Q Consensus 123 d~~iG~~~i~l~~l~~---~~~~~~w~~L~ 149 (268)
+++||++.+++.++.. ......||+|.
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 9999999999999986 34578899884
No 109
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.76 E-value=2.9e-18 Score=129.85 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=88.4
Q ss_pred EeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCc
Q psy3954 30 KHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGE 96 (268)
Q Consensus 30 ~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne 96 (268)
++.++.|... .+.|.|+|+ +|++|+ +..+.+| ||+ ...+|+++++++||.|||
T Consensus 2 i~~~l~y~~~-------------~~~L~V~Vi-~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne 67 (133)
T cd08384 2 ILVSLMYNTQ-------------RRGLIVGII-RCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNE 67 (133)
T ss_pred EEEEEEEcCC-------------CCEEEEEEE-EEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCccc
Confidence 4566777766 789999999 999999 6778899 998 357899999999999999
Q ss_pred EEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 97 EFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 97 ~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
+|.|.++.. ...|.|+|||.+ ..++|++||++.+++.. .+.....|+++..
T Consensus 68 ~f~f~~~~~~l~~~~l~~~V~d~d-~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 68 EFFYDIKHSDLAKKTLEITVWDKD-IGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEEECCHHHhCCCEEEEEEEeCC-CCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999998765 578999999999 78889999999999985 3455678988754
No 110
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.76 E-value=5e-18 Score=128.64 Aligned_cols=90 Identities=26% Similarity=0.278 Sum_probs=79.3
Q ss_pred CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954 169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG 246 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~ 246 (268)
.|.|.|+|++|++|+ +..|.+||||++.+. ...++|++++++.||.|||.|.|.+.....+.|.|+|||++..
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 577899999999997 567889999999986 5678999999999999999999998654444599999999988
Q ss_pred -CCeeeEEEEEeCCccCC
Q psy3954 247 -LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 247 -~~~~lG~~~l~l~~~~~ 263 (268)
++++||++.+++.++..
T Consensus 89 ~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 89 SPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCeeEEEEEEHHHhcc
Confidence 89999999999998875
No 111
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.76 E-value=1.2e-17 Score=126.63 Aligned_cols=108 Identities=21% Similarity=0.315 Sum_probs=88.8
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC----------CCcEEEEEEEeC
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR----------RFRHLAVYAYDR 116 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~----------~~~~l~~~v~d~ 116 (268)
+|+|+|+ +|++|+ +..+.+| ||+ ...||+++++|+||.|||.|.|.+.. ....|.|+|||+
T Consensus 2 ~l~v~V~-~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIY-QARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEE-EeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 6899999 999998 7788999 998 78899999999999999999997421 125799999999
Q ss_pred CCCCCCCceeEEEEE-ecccccc---ccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 117 DRTSKTDRVLGKVTI-QRSDLHR---ISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 117 d~~~~~d~~iG~~~i-~l~~l~~---~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
+ ..++|++||++.+ ++..+.. ......|++|.... ...|+|++++.+
T Consensus 81 d-~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~ 131 (135)
T cd04017 81 D-SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFEL 131 (135)
T ss_pred c-CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEE
Confidence 9 7889999999987 4444442 35677999997432 358999999876
No 112
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=6.8e-18 Score=122.76 Aligned_cols=84 Identities=12% Similarity=0.254 Sum_probs=73.3
Q ss_pred eEEEEEEEcccCccc--cC---C-CCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCCCC
Q psy3954 54 GTLRIRIQYTADHIL--QP---H-YYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRDRT 119 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~---~-~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~~ 119 (268)
|.|.|+|+ +|++|+ +. . +.+| ||+ ..+||+++++++||+|||.|.|.+... ...|.|+|||++ .
T Consensus 1 g~l~v~v~-~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d-~ 78 (108)
T cd04039 1 GVVFMEIK-SITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD-K 78 (108)
T ss_pred CEEEEEEE-eeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC-C
Confidence 67999999 999999 32 1 3479 999 778999999999999999999998654 468999999999 7
Q ss_pred CCCCceeEEEEEeccccccc
Q psy3954 120 SKTDRVLGKVTIQRSDLHRI 139 (268)
Q Consensus 120 ~~~d~~iG~~~i~l~~l~~~ 139 (268)
.++|++||++.++|+++..+
T Consensus 79 ~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 79 FSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred CCCCcceEEEEEEHHHHHhh
Confidence 88999999999999998743
No 113
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.75 E-value=9.7e-18 Score=124.80 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=76.2
Q ss_pred eEEEEEceecC---CC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC
Q psy3954 171 SLMVNVNEASG---LT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS 245 (268)
Q Consensus 171 ~L~v~v~~a~~---L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~ 245 (268)
.|.|+|++|++ |+ +..|.+||||.+.+. .++.+|++++++.||+|||+|.|.+.... ..|.|+|||++.
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~ 74 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQ 74 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCC
Confidence 37899999999 65 567889999999987 56789999999999999999999986432 359999999887
Q ss_pred C-------CCeeeEEEEEeCCccCCC
Q psy3954 246 G-------LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 246 ~-------~~~~lG~~~l~l~~~~~~ 264 (268)
. ++++||++.++++++..+
T Consensus 75 ~~~~~~~~~dd~lG~~~i~l~~l~~~ 100 (126)
T cd08379 75 SHWKEAVQPDVLIGKVRIRLSTLEDD 100 (126)
T ss_pred ccccccCCCCceEEEEEEEHHHccCC
Confidence 5 899999999999998765
No 114
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=1.9e-17 Score=124.38 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=91.7
Q ss_pred EEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEE
Q psy3954 60 IQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVT 130 (268)
Q Consensus 60 v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~ 130 (268)
|+ +|++|+...+.+| ||+ ..++|++++++.||+|||+|.|.+... ...|.|+|||++ ..++|++||++.
T Consensus 2 vi-~a~~L~~~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~-~~~~d~~iG~~~ 79 (127)
T cd08373 2 VV-SLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYE-KVGRNRLIGSAT 79 (127)
T ss_pred eE-EeeCCcccCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECC-CCCCCceEEEEE
Confidence 56 8999997677899 998 678999999999999999999998653 689999999999 788899999999
Q ss_pred EeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 131 IQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 131 i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
++++++..+.....|++|.+... ....|+|++++.|.
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~-~~~~~~l~l~~~~~ 116 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNG-RPTGATISLEVSYQ 116 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCC-CcccEEEEEEEEEe
Confidence 99999998777889999976543 33469999999885
No 115
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.75 E-value=1.6e-17 Score=122.92 Aligned_cols=106 Identities=40% Similarity=0.698 Sum_probs=86.9
Q ss_pred EEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCCce
Q psy3954 56 LRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 56 L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~ 125 (268)
|.|+|+ +|++|+.. +.+| ||. ..++|+++++ .||.|||+|.|.++.. ...|.+.+||.+ ...++..
T Consensus 2 L~v~vi-~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~-~~~~~~~ 77 (117)
T cd08383 2 LRLRIL-EAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKR-SKDRDIV 77 (117)
T ss_pred eEEEEE-EecCCCcC-CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecc-cCCCeeE
Confidence 789999 99999944 7899 999 4589999999 9999999999998874 467888999988 5666777
Q ss_pred eEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
+|.+.+. .+..+...+.|++|.+.+......|+|++.+.|
T Consensus 78 ~g~v~l~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALS--KLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEec--CcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 7776554 444466678999999877666678999999876
No 116
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.75 E-value=5.5e-18 Score=128.43 Aligned_cols=106 Identities=17% Similarity=0.269 Sum_probs=89.3
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w 94 (268)
|.+..|+.|... .+.|+|+|+ +|++|+ +..+.+| ||+ ...+|+++++++||.|
T Consensus 1 g~l~~~~~y~~~-------------~~~L~V~v~-~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w 66 (134)
T cd08403 1 GELMFSLCYLPT-------------AGRLTLTII-KARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY 66 (134)
T ss_pred CeEEEEEEEcCC-------------CCEEEEEEE-EeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence 567778888866 789999999 999999 6778999 997 2568999999999999
Q ss_pred CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
||+|.|.++.+ ...|.|+|||++ ..+++++||++.+++. ..+.+.+.|+++-.
T Consensus 67 ne~f~f~i~~~~~~~~~l~~~v~d~~-~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 67 NEALVFDVPPENVDNVSLIIAVVDYD-RVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred cceEEEECCHHHhCCCEEEEEEEECC-CCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 99999998765 357999999999 7889999999999877 33456778987743
No 117
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.75 E-value=2.9e-17 Score=126.00 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=87.9
Q ss_pred EEEEEEcccCc--cc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC---------CcEEEE
Q psy3954 56 LRIRIQYTADH--IL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR---------FRHLAV 111 (268)
Q Consensus 56 L~V~v~~~a~~--L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~---------~~~l~~ 111 (268)
..++|. .|++ |+ +..+.+| ||+ ++.||+++++|+||+|||+|.|.++.. ...|.|
T Consensus 4 ~el~i~-~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIV-RCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEE-EeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 345555 5555 66 5677899 998 589999999999999999999998765 357999
Q ss_pred EEEeCCCCC-CCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 112 YAYDRDRTS-KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 112 ~v~d~d~~~-~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
+|||.+ .+ .+|++||++.++|+.+........|++|... .....|+|+++++..
T Consensus 83 ~V~d~~-~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~--~k~~Gg~l~v~ir~r 137 (155)
T cd08690 83 EVYHKG-GFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG--RKATGGKLEVKVRLR 137 (155)
T ss_pred EEEeCC-CcccCCCeeEEEEEEcccccccCcceEEEEhhhC--CCCcCCEEEEEEEec
Confidence 999999 54 5799999999999999877677789998643 234578999888764
No 118
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.75 E-value=4.7e-18 Score=129.04 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=89.0
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~ 93 (268)
+.+..++.|... .+.|.|+|+ +|+||+ +..+.+| ||+ .+.||++++++.||+
T Consensus 2 ~ei~~sL~Y~~~-------------~~~L~V~Vi-karnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv 67 (138)
T cd08408 2 PELLLGLEYNAL-------------TGRLSVEVI-KGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67 (138)
T ss_pred CeEEEEeEEcCC-------------CCeEEEEEE-EecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence 456677778766 789999999 999999 7778899 999 246899999999999
Q ss_pred cCcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCc
Q psy3954 94 FGEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 94 wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
|||+|.|.++.+ ...|.|.|||.+ .++++++||++.+++.... ..+.++|..+.
T Consensus 68 fnEtF~f~i~~~~l~~~~L~~~V~~~~-~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l 124 (138)
T cd08408 68 FKETFVFQVALFQLSEVTLMFSVYNKR-KMKRKEMIGWFSLGLNSSG-EEEEEHWNEMK 124 (138)
T ss_pred EeeeEEEECCHHHhCccEEEEEEEECC-CCCCCcEEEEEEECCcCCC-chHHHHHHHHH
Confidence 999999999875 579999999999 6889999999999887443 23457888764
No 119
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.75 E-value=1.4e-17 Score=124.41 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=85.5
Q ss_pred EEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCC-CCcc
Q psy3954 29 VKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVT-SPFF 94 (268)
Q Consensus 29 ~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~-nP~w 94 (268)
.++.++.|... .+.|+|+|+ +|+||+ ...+..| ||+ .+.||+++++|+ ||+|
T Consensus 2 el~~sL~Y~p~-------------~~rLtV~Vi-karnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~f 67 (135)
T cd08692 2 ELQLGTCFQAV-------------NSRIQLQIL-EAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKW 67 (135)
T ss_pred eEEEEeeecCc-------------CCeEEEEEE-EccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCcee
Confidence 35667777766 789999999 999999 3455678 999 688999999995 6999
Q ss_pred CcEEEEEecCC--CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954 95 GEEFQFDIPRR--FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 95 ne~f~f~v~~~--~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
||+|.|+++.+ ...|.++|||++ ..+++++||++.++..... +.+.++|.+.
T Consensus 68 NEsF~Fdv~~~~~~v~l~v~v~d~~-~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m 121 (135)
T cd08692 68 GETMIFPVTQQEHGIQFLIKLYSRS-SVRRKHFLGQVWISSDSSS-SEAVEQWKDT 121 (135)
T ss_pred cceEEEeCCchhheeEEEEEEEeCC-CCcCCceEEEEEECCccCC-chhhhhHHHH
Confidence 99999999876 567889999999 7889999999999987532 3446788764
No 120
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=1.2e-17 Score=128.22 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=75.4
Q ss_pred eEEEEEceecCCCCC--C--------------CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCc
Q psy3954 171 SLMVNVNEASGLTQV--N--------------GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPI 234 (268)
Q Consensus 171 ~L~v~v~~a~~L~~~--~--------------g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~ 234 (268)
.|.|+|++|++|+.. . +.+||||+|.+. ..+.+|++++++.||+|||+|.|++..+...
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-----g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-----GQKVKTSVKKNSYNPEWNEQIVFPEMFPPLC 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-----CEeeecceEcCCCCCCcceEEEEEeeCCCcC
Confidence 478999999999832 2 358999999987 4567999999999999999999997655555
Q ss_pred e-EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 235 E-LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 235 ~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
. |.|+|||++.. ++++||.+.+++.++..
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 4 99999999998 99999999999998755
No 121
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=1.6e-17 Score=123.86 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=76.8
Q ss_pred CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEcc-CCCCceEEEEEEecCCC
Q psy3954 169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS-LGDPIELVVSLHHDISG 246 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~-~~~~~~l~i~V~d~~~~ 246 (268)
.+.|.|+|++|++|+ +..+.+||||++++. ..+++|++++++.||+|||+|.|... ......|.|+|||++..
T Consensus 27 ~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~-----~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 27 LATLTVTVLRATGLWGDYFTSTDGYVKVFFG-----GQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNG 101 (127)
T ss_pred cEEEEEEEEECCCCCcCcCCCCCeEEEEEEC-----CccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCC
Confidence 577889999999997 556779999999986 34889999999999999999999742 23333499999999998
Q ss_pred -CCeeeEEEEEeCCccCCC
Q psy3954 247 -LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 247 -~~~~lG~~~l~l~~~~~~ 264 (268)
++++||++.+++.....+
T Consensus 102 s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 102 WDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCCeeEEEEEEecCCcee
Confidence 999999999999876543
No 122
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=2e-17 Score=122.20 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=76.9
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
++|.|++|++|+ +..|.+||||++++. ..+.+|++++++.||.|||.|.|.+.......|.|+|||++.. ++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~ 76 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKD 76 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 789999999997 456789999999986 4678999999999999999999998755434499999999988 89
Q ss_pred eeeEEEEEeCCccCCC
Q psy3954 249 VFLGEVHIPLNNKETS 264 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~~ 264 (268)
++||++.++++++..+
T Consensus 77 ~~iG~~~~~l~~l~~~ 92 (116)
T cd08376 77 EFIGRCEIDLSALPRE 92 (116)
T ss_pred CeEEEEEEeHHHCCCC
Confidence 9999999999888764
No 123
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.74 E-value=1.8e-17 Score=122.82 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=75.5
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDPIELVVSLHHDISG 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~ 246 (268)
|.|.|.|++|++|+ +..+.+||||++.+. ..+++|+++. ++.||.|||.|.|.+..+..+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~ 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG-----GVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC-----CCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 57999999999997 456779999999987 3567888875 578999999999998765444599999998776
Q ss_pred CCeeeEEEEEeCCccCC
Q psy3954 247 LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~~ 263 (268)
++++||++.++++++..
T Consensus 76 ~~~~iG~~~~~l~~~~~ 92 (118)
T cd08681 76 KPDLIGDTEVDLSPALK 92 (118)
T ss_pred CCcceEEEEEecHHHhh
Confidence 78999999999998754
No 124
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.74 E-value=2.9e-17 Score=122.63 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=89.7
Q ss_pred eEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCc
Q psy3954 27 LMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPF 93 (268)
Q Consensus 27 l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~ 93 (268)
+|.+..+++|... .+.|.|+|+ +|++|+ +..+.+| ||+ ...||++++++.||.
T Consensus 1 ~G~~~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~ 66 (123)
T cd04035 1 LGTLEFTLLYDPA-------------NSALHCTII-RAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPE 66 (123)
T ss_pred CcEEEEEEEEeCC-------------CCEEEEEEE-EeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCC
Confidence 5888999999877 688999999 999998 6677899 998 368999999999999
Q ss_pred cCcEEEEE-ecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954 94 FGEEFQFD-IPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147 (268)
Q Consensus 94 wne~f~f~-v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~ 147 (268)
|||+|.|. +... ...|.|+|||.+ .. .+++||++.++++++..++..+.|+.
T Consensus 67 Wne~f~f~~~~~~~~~~~~l~~~v~d~~-~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 67 FNETLTYYGITEEDIQRKTLRLLVLDED-RF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred ccceEEEcCCCHHHhCCCEEEEEEEEcC-Cc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999996 4432 578999999999 66 78899999999999987666666554
No 125
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.74 E-value=2.4e-17 Score=124.68 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=84.9
Q ss_pred ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE------------EEeeecccCCCC
Q psy3954 26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT------------QILNSPSVNPVT 90 (268)
Q Consensus 26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~------------~~~~T~~~~~t~ 90 (268)
+.|.+..++.|... .+.|.|+|+ +|++|+ +..+.+| ||+ ..+||+++++|+
T Consensus 1 ~~G~l~~~l~y~~~-------------~~~L~V~Vi-~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~ 66 (133)
T cd04009 1 PYGVLTVKAYYRAS-------------EQSLRVEIL-NARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTL 66 (133)
T ss_pred CceEEEEEEEEcCC-------------CCEEEEEEE-EeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCC
Confidence 35788888888765 678999999 999999 6678899 998 157999999999
Q ss_pred CCccCcEEEEEecCC-----CcEEEEEEEeCCCCCCCCceeEEEEEeccccc
Q psy3954 91 SPFFGEEFQFDIPRR-----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH 137 (268)
Q Consensus 91 nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~ 137 (268)
||+|||+|.|.+... ...|.|+|||++ ..++|++||++.++|+++.
T Consensus 67 nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d-~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 67 FPLFDESFEFNVPPEQCSVEGALLLFTVKDYD-LLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred CCccCCEEEEEechhhcccCCCEEEEEEEecC-CCCCCcEeEEEEEeHHHCC
Confidence 999999999998753 568999999999 7888999999999999887
No 126
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.73 E-value=3.1e-17 Score=122.29 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=77.8
Q ss_pred cccCCCeEEEEEEEcccCccc-cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEe-cC-CCcEEEEEEEeCCC
Q psy3954 48 QIIQDLGTLRIRIQYTADHIL-QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDI-PR-RFRHLAVYAYDRDR 118 (268)
Q Consensus 48 ~~~~~~~~L~V~v~~~a~~L~-~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v-~~-~~~~l~~~v~d~d~ 118 (268)
....+.+.|.|+|+ +|++|+ +..+.+| ||+ +++||+++++++||+|||+|.|.. .. ....|.|+|||++
T Consensus 22 ~~~~~~~~L~V~V~-~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d- 99 (127)
T cd04032 22 PTRRGLATLTVTVL-RATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD- 99 (127)
T ss_pred cCcCCcEEEEEEEE-ECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC-
Confidence 34677899999999 999999 7778899 998 689999999999999999999973 33 3789999999999
Q ss_pred CCCCCceeEEEEEeccccc
Q psy3954 119 TSKTDRVLGKVTIQRSDLH 137 (268)
Q Consensus 119 ~~~~d~~iG~~~i~l~~l~ 137 (268)
..++|++||++.++++...
T Consensus 100 ~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 100 NGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCeeEEEEEEecCCc
Confidence 7889999999999999665
No 127
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.73 E-value=2.4e-17 Score=122.37 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=77.4
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCe
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNV 249 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~ 249 (268)
|.|+|++|++|+ +..+.+||||++.+... ...+++|++++++.||+|||+|.|.+.......|.|+|||++..+++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~ 79 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA--SDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDD 79 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC--CCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCc
Confidence 789999999997 44677999999998622 23568999999999999999999998765433499999999877889
Q ss_pred eeEEEEEeCCccCCCC
Q psy3954 250 FLGEVHIPLNNKETSS 265 (268)
Q Consensus 250 ~lG~~~l~l~~~~~~~ 265 (268)
+||++.++++.+..+.
T Consensus 80 ~iG~~~~~l~~l~~g~ 95 (119)
T cd04036 80 HLGTVLFDVSKLKLGE 95 (119)
T ss_pred ccEEEEEEHHHCCCCC
Confidence 9999999999887653
No 128
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=3.5e-17 Score=122.19 Aligned_cols=88 Identities=31% Similarity=0.334 Sum_probs=77.0
Q ss_pred eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954 171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L 247 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~ 247 (268)
+|.|+|++|++|+ +..+.+||||++++. ..+.+|++++++.||.|||+|.|.+.......|.|+|||++.. +
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~ 75 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSK 75 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCC
Confidence 5899999999996 456779999999986 4568999999999999999999998765544499999999888 8
Q ss_pred CeeeEEEEEeCCccCC
Q psy3954 248 NVFLGEVHIPLNNKET 263 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~ 263 (268)
+++||++.++++++..
T Consensus 76 ~~~iG~~~~~l~~l~~ 91 (123)
T cd04025 76 NDFLGKVVFSIQTLQQ 91 (123)
T ss_pred CcEeEEEEEEHHHccc
Confidence 9999999999998864
No 129
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=1.6e-17 Score=121.48 Aligned_cols=87 Identities=29% Similarity=0.249 Sum_probs=76.9
Q ss_pred EEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCcc-ceEEEEEccCCCCc--eEEEEEEecCC
Q psy3954 172 LMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVF-NESFMFDRSLGDPI--ELVVSLHHDIS 245 (268)
Q Consensus 172 L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~-ne~f~f~v~~~~~~--~l~i~V~d~~~ 245 (268)
|.|+|++|++|+. ..|.+||||++++. ..+++|+++++++||.| ||.|.|.++...+. .|.|+|||++.
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-----STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC-----CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 5799999999973 35679999999997 37789999999999999 99999999876654 39999999998
Q ss_pred C-CCeeeEEEEEeCCccCC
Q psy3954 246 G-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 246 ~-~~~~lG~~~l~l~~~~~ 263 (268)
. ++++||++.+++.++..
T Consensus 76 ~~~~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLL 94 (110)
T ss_pred CCCCCceEEEEEeHHHhcc
Confidence 8 89999999999999866
No 130
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=2.2e-17 Score=119.78 Aligned_cols=85 Identities=29% Similarity=0.436 Sum_probs=75.5
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCe
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNV 249 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~ 249 (268)
|.|+|++|++|+ +..+.+||||++.+. ..+++|++++++.||.|||.|.|.+..+..+.|.|+|||++. ++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~ 74 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG-----KTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GK 74 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC-----CEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CC
Confidence 789999999998 456779999999997 478899999999999999999999987666669999999876 88
Q ss_pred eeEEEEEeCCccCC
Q psy3954 250 FLGEVHIPLNNKET 263 (268)
Q Consensus 250 ~lG~~~l~l~~~~~ 263 (268)
+||++.++|.++..
T Consensus 75 ~iG~~~i~l~~l~~ 88 (105)
T cd04050 75 SLGSLTLPLSELLK 88 (105)
T ss_pred ccEEEEEEHHHhhc
Confidence 99999999988764
No 131
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.73 E-value=4.6e-17 Score=119.88 Aligned_cols=86 Identities=20% Similarity=0.231 Sum_probs=74.0
Q ss_pred CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-EEEEEEecCCCC
Q psy3954 169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-LVVSLHHDISGL 247 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l~i~V~d~~~~~ 247 (268)
.+.|.|.|++||+|++.. ..||||++.++ ..+.+|++.++ .||.|||.|.|.+.. .+. |.|+|||++..+
T Consensus 1 m~~L~V~Vv~Ar~L~~~~-~~dPYV~Ik~g-----~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD-KFNTYVTLKVQ-----NVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIW 71 (127)
T ss_pred CceEEEEEEEeeCCCCCC-CCCCeEEEEEC-----CEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcC
Confidence 368999999999998644 46999999997 56789999988 599999999999854 333 999999998669
Q ss_pred CeeeEEEEEeCCccCC
Q psy3954 248 NVFLGEVHIPLNNKET 263 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~ 263 (268)
|++||++.|+|+++..
T Consensus 72 DD~lG~v~i~L~~v~~ 87 (127)
T cd08394 72 DTLVGTVWIPLSTIRQ 87 (127)
T ss_pred CCceEEEEEEhHHccc
Confidence 9999999999999875
No 132
>KOG1028|consensus
Probab=99.73 E-value=2.6e-17 Score=146.29 Aligned_cols=109 Identities=28% Similarity=0.361 Sum_probs=96.9
Q ss_pred cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC
Q psy3954 155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL 230 (268)
Q Consensus 155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~ 230 (268)
....|+|.+++.|. ...|.|+|++|++|+ +..|.+||||++++.++ +..+.+|++.++++||.|||+|.|.|+.
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPd--k~~k~kT~v~r~tlnP~fnEtf~f~v~~ 227 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPD--KKGKFKTRVHRKTLNPVFNETFRFEVPY 227 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCC--CCCcceeeeeecCcCCccccceEeecCH
Confidence 45689999999998 889999999999997 54567999999999944 4678999999999999999999999888
Q ss_pred CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCC
Q psy3954 231 GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSS 265 (268)
Q Consensus 231 ~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~ 265 (268)
.++.. |.++|||.|++ ++++||++.++|..+....
T Consensus 228 ~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~ 265 (421)
T KOG1028|consen 228 EELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLS 265 (421)
T ss_pred HHhccCEEEEEEEecCCcccccEEEEEEecCccccccc
Confidence 77766 99999999999 9999999999988887643
No 133
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=3.6e-17 Score=121.58 Aligned_cols=85 Identities=27% Similarity=0.346 Sum_probs=74.7
Q ss_pred EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCeee
Q psy3954 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFL 251 (268)
Q Consensus 172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~l 251 (268)
|.|.|++|+||+.. .+||||++.+. ..+.+|++++++.||+|||+|.|.+....-..|.|+|||++..++++|
T Consensus 2 L~V~Vi~a~~L~~~--~~Dpyv~v~l~-----~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~l 74 (121)
T cd08378 2 LYVRVVKARGLPAN--SNDPVVEVKLG-----NYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFL 74 (121)
T ss_pred EEEEEEEecCCCcc--cCCCEEEEEEC-----CccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCcee
Confidence 78999999999866 79999999997 457899999999999999999999754433449999999987789999
Q ss_pred EEEEEeCCccCC
Q psy3954 252 GEVHIPLNNKET 263 (268)
Q Consensus 252 G~~~l~l~~~~~ 263 (268)
|++.++++++..
T Consensus 75 G~~~i~l~~l~~ 86 (121)
T cd08378 75 GGVCFDLSEVPT 86 (121)
T ss_pred eeEEEEhHhCcC
Confidence 999999999865
No 134
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.73 E-value=4.2e-17 Score=121.95 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=86.2
Q ss_pred eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCC-CCCCccCcEEEEEecCC----CcEEEEEEEeCCCCC
Q psy3954 54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNP-VTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTS 120 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~-t~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~ 120 (268)
|.|.|+|+ +|++|+ +..+.+| ||+ ...+|+++++ +.||.|||+|.|.++.. ...|.|+|||.+ ..
T Consensus 1 g~L~V~V~-~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~-~~ 78 (124)
T cd04049 1 GTLEVLLI-SAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD-NF 78 (124)
T ss_pred CeEEEEEE-ecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc-cC
Confidence 57999999 999998 6677899 998 6678888875 89999999999998876 578999999999 78
Q ss_pred CCCceeEEEEEeccccccccCccceecCcccC
Q psy3954 121 KTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT 152 (268)
Q Consensus 121 ~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 152 (268)
++|++||++.++++++......+.|+.|.|..
T Consensus 79 ~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~ 110 (124)
T cd04049 79 SDDDFIGEATIHLKGLFEEGVEPGTAELVPAK 110 (124)
T ss_pred CCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence 88999999999999998777889999998864
No 135
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=3.6e-17 Score=119.87 Aligned_cols=94 Identities=18% Similarity=0.316 Sum_probs=81.4
Q ss_pred CeEEEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC-----CcEEEEEEEeCCCCCC
Q psy3954 53 LGTLRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR-----FRHLAVYAYDRDRTSK 121 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~~~ 121 (268)
...|+|+|+ +|++|+ .+.+| ||+ ++++|++++++.||.|||+|.|.+... ...|.|+|||.+ .++
T Consensus 3 ~~~l~V~v~-~a~~L~--~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~-~~~ 78 (111)
T cd04011 3 DFQVRVRVI-EARQLV--GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR-SLR 78 (111)
T ss_pred cEEEEEEEE-EcccCC--CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc-ccc
Confidence 568999999 999998 67889 999 788999999999999999999996543 468999999999 788
Q ss_pred CCceeEEEEEecccccccc---CccceecCcc
Q psy3954 122 TDRVLGKVTIQRSDLHRIS---NKEHWFPLTP 150 (268)
Q Consensus 122 ~d~~iG~~~i~l~~l~~~~---~~~~w~~L~~ 150 (268)
+|++||++.++++++.... ....|++|..
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8999999999999987543 3578998854
No 136
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=2.8e-17 Score=126.14 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=78.7
Q ss_pred EEEEEEEcccCccc--cCC--------------CCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecC--CCcEEE
Q psy3954 55 TLRIRIQYTADHIL--QPH--------------YYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPR--RFRHLA 110 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~--------------~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~--~~~~l~ 110 (268)
.|.|+|+ +|++|| +.+ +.+| ||+ ++.||+++++++||+|||+|.|.+.. ....|.
T Consensus 1 ~~~V~V~-~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIY-RAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEE-EeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 3789999 999999 433 3689 999 77899999999999999999998643 367999
Q ss_pred EEEEeCCCCCCCCceeEEEEEeccccccccC-------ccceecCcccC
Q psy3954 111 VYAYDRDRTSKTDRVLGKVTIQRSDLHRISN-------KEHWFPLTPVT 152 (268)
Q Consensus 111 ~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~-------~~~w~~L~~~~ 152 (268)
|+|||+| ..++|++||++.+++.++..... ...|+.|....
T Consensus 80 ~~v~D~d-~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~ 127 (151)
T cd04018 80 IQIRDWD-RVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSP 127 (151)
T ss_pred EEEEECC-CCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCc
Confidence 9999999 78899999999999998875332 24677775443
No 137
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.72 E-value=4.6e-17 Score=121.18 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=77.0
Q ss_pred eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954 171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L 247 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~ 247 (268)
+|.|+|++|++|+ +..|.+||||++.+. + ...++|++++++.||+|||.|.|.+... -..|.|+|||++.. +
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~-~---~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG-G---KTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLT 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC-C---EEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCC
Confidence 4899999999997 556889999999986 1 3578999999999999999999987542 23499999999998 9
Q ss_pred CeeeEEEEEeCCccCCCC
Q psy3954 248 NVFLGEVHIPLNNKETSS 265 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~~~ 265 (268)
+++||++.++++++..+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~ 93 (121)
T cd04042 76 DDFMGSAFVDLSTLELNK 93 (121)
T ss_pred CcceEEEEEEHHHcCCCC
Confidence 999999999999987643
No 138
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.72 E-value=2.8e-17 Score=123.43 Aligned_cols=87 Identities=25% Similarity=0.341 Sum_probs=75.4
Q ss_pred eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC-C--ceEEEEEEecCC
Q psy3954 171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD-P--IELVVSLHHDIS 245 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~-~--~~l~i~V~d~~~ 245 (268)
+|.|+|++|++|+ +..|.+||||++.+. ..+++|++++++.||+|||.|.|.+.... + ..|.|+|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD-----GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 4899999999997 556789999999987 46789999999999999999999987532 2 239999999887
Q ss_pred C--CCeeeEEEEEeCCccC
Q psy3954 246 G--LNVFLGEVHIPLNNKE 262 (268)
Q Consensus 246 ~--~~~~lG~~~l~l~~~~ 262 (268)
. ++++||++.++++++.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred CcCCCCeeeEEEEcHHHcC
Confidence 6 7999999999999886
No 139
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.72 E-value=3.2e-17 Score=124.20 Aligned_cols=107 Identities=19% Similarity=0.299 Sum_probs=92.2
Q ss_pred EEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCcc
Q psy3954 28 MVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFF 94 (268)
Q Consensus 28 ~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~w 94 (268)
|.++.+++|... .+.|.|+|+ +|++|+ +..+.+| ||+ ..++|++++++.||.|
T Consensus 1 G~i~~~l~y~~~-------------~~~L~V~v~-~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w 66 (134)
T cd00276 1 GELLLSLSYLPT-------------AERLTVVVL-KARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66 (134)
T ss_pred CeEEEEEEeeCC-------------CCEEEEEEE-EeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence 466777777765 689999999 999999 5678889 998 2569999999999999
Q ss_pred CcEEEEEecCC---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954 95 GEEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV 151 (268)
Q Consensus 95 ne~f~f~v~~~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 151 (268)
||+|.|.++.. ...|.|+|||.+ ..+++++||.+.+++++ .+...+.|++|...
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~v~d~~-~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 67 NEAFSFDVPAEQLEEVSLVITVVDKD-SVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred eeeEEEECCHHHhCCcEEEEEEEecC-CCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 99999998876 478999999999 67889999999999999 56678999998654
No 140
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.72 E-value=4.4e-17 Score=122.00 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=87.9
Q ss_pred EEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccC-CCCCCccCcEEEEEecCC-----CcEEEEEEEeCCCC
Q psy3954 55 TLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVN-PVTSPFFGEEFQFDIPRR-----FRHLAVYAYDRDRT 119 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~-~t~nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~ 119 (268)
.|.|+|+ +|++|+ +..+.+| ||+ ...+|+++. ++.||.|||.|.|.++.. ...|.|+|||.+ .
T Consensus 1 ~L~V~V~-sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~-~ 78 (125)
T cd04051 1 TLEITII-SAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER-P 78 (125)
T ss_pred CEEEEEE-EcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC-C
Confidence 3789999 999999 6678899 998 567888875 589999999999998777 689999999999 7
Q ss_pred CCCCceeEEEEEeccccccccC-----ccceecCcccCCCcccceEEEE
Q psy3954 120 SKTDRVLGKVTIQRSDLHRISN-----KEHWFPLTPVTQDSEVQGKIQI 163 (268)
Q Consensus 120 ~~~d~~iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~G~i~v 163 (268)
+++|++||++.+++.++..... ...|++|...+ +...|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 7889999999999999986544 36899997644 556788764
No 141
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.72 E-value=6.2e-17 Score=124.53 Aligned_cols=87 Identities=25% Similarity=0.311 Sum_probs=75.6
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccC-CCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK-SHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L 247 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~ 247 (268)
|.|+|++|++|+ +..|.+||||++.+. .+..+|++..+ +.||+|||.|.|.+.....+.|.|+|||++.. +
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~-----~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~ 76 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG-----NQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNK 76 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEEC-----CEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCC
Confidence 789999999996 667889999999997 46788998876 69999999999998654444599999999887 8
Q ss_pred CeeeEEEEEeCCccCC
Q psy3954 248 NVFLGEVHIPLNNKET 263 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~ 263 (268)
+++||++.|+|+++..
T Consensus 77 dd~lG~v~i~L~~l~~ 92 (150)
T cd04019 77 DEPLGRAVIPLNDIER 92 (150)
T ss_pred CCeEEEEEEEHHHCcc
Confidence 9999999999999854
No 142
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.71 E-value=7.1e-17 Score=119.77 Aligned_cols=93 Identities=27% Similarity=0.363 Sum_probs=79.1
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG- 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~- 246 (268)
|.|.|+|++|++|+ +..+.+||||++.+. ....+|++++++.||.|||+|.|.+... -..|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~ 74 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV-----NARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDK 74 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC-----CEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCC
Confidence 57899999999997 456779999999986 4457999999999999999999987531 22399999999887
Q ss_pred CCeeeEEEEEeCCccCCCCCCC
Q psy3954 247 LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~~~~~~w 268 (268)
++++||++.+++.++..+...|
T Consensus 75 ~~~~iG~~~~~l~~~~~~~~~~ 96 (119)
T cd08377 75 KPEFLGKVAIPLLSIKNGERKW 96 (119)
T ss_pred CCceeeEEEEEHHHCCCCCceE
Confidence 8999999999999998776655
No 143
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=7.4e-17 Score=119.70 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=84.7
Q ss_pred eEEEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCc
Q psy3954 54 GTLRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR 124 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~ 124 (268)
|.|+|+|+ +|++|+ +..+.+| ||+ ...+|++++++.||.|||+|.|.+....+.|.|+|||.+ ..++|+
T Consensus 1 g~L~V~Vi-~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~-~~~~d~ 78 (120)
T cd04045 1 GVLRLHIR-KANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYE-KVGKDR 78 (120)
T ss_pred CeEEEEEE-eeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECC-CCCCCC
Confidence 57899999 999999 6678999 998 468999999999999999999998877789999999999 788899
Q ss_pred eeEEEEEeccccccccCccceecCcccC
Q psy3954 125 VLGKVTIQRSDLHRISNKEHWFPLTPVT 152 (268)
Q Consensus 125 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 152 (268)
+||++.+++.++... ..+.|+.|...+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999999999999865 667888776544
No 144
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=6.2e-17 Score=118.61 Aligned_cols=90 Identities=23% Similarity=0.327 Sum_probs=77.1
Q ss_pred CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC--Cc--eEEEEEEecCC
Q psy3954 170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD--PI--ELVVSLHHDIS 245 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~--~~--~l~i~V~d~~~ 245 (268)
..|.|.|++|++|+ .|.+||||++++. .++++|++++++.||.|||.|.|.+.... +. .|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~--~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV--GGNIDPVVKVEVG-----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC--CCCCCCEEEEEEC-----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 46899999999999 6779999999998 45779999999999999999999875432 22 29999999998
Q ss_pred C-CCeeeEEEEEeCCccCCCCC
Q psy3954 246 G-LNVFLGEVHIPLNNKETSSS 266 (268)
Q Consensus 246 ~-~~~~lG~~~l~l~~~~~~~~ 266 (268)
. ++++||++.++++++..+..
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~ 98 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPD 98 (111)
T ss_pred cccCCccEEEEECCccccCCCC
Confidence 8 89999999999999976543
No 145
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=9.5e-17 Score=118.36 Aligned_cols=103 Identities=23% Similarity=0.385 Sum_probs=88.0
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCce
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~ 125 (268)
|+|+|+ +|++|+ +..+.+| ||+ ..++|+++.++.||.|||+|.|.++.. .+.|.|+|||.+ ..+++++
T Consensus 1 l~v~vi-~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~-~~~~~~~ 78 (115)
T cd04040 1 LTVDVI-SAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWD-RGGKDDL 78 (115)
T ss_pred CEEEEE-eeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCC-CCCCCCc
Confidence 578999 999999 6677889 998 457999999999999999999998875 789999999999 7888999
Q ss_pred eEEEEEeccccccccCccceecCcccCCCcccceEEE
Q psy3954 126 LGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQ 162 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~ 162 (268)
||++.+++.++..+...+.|++|.+... ...|.+.
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCCCC--ccCceEE
Confidence 9999999999987777899999986542 2345553
No 146
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.71 E-value=2.5e-16 Score=119.04 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=90.6
Q ss_pred EEEEEEEcccCccc-cCCCCCC-ceE--------E----------EeeecccCCCCCCcc-CcEEEEEecCCCcEEEEEE
Q psy3954 55 TLRIRIQYTADHIL-QPHYYED-LCT--------Q----------ILNSPSVNPVTSPFF-GEEFQFDIPRRFRHLAVYA 113 (268)
Q Consensus 55 ~L~V~v~~~a~~L~-~~~~~~d-yv~--------~----------~~~T~~~~~t~nP~w-ne~f~f~v~~~~~~l~~~v 113 (268)
...|+++ +|++|+ +..|.+| ||+ . .+||+++++++||+| ||+|.|.+... +.|.|+|
T Consensus 2 ~~~~~~~-~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-~~L~v~V 79 (137)
T cd08691 2 SFSLSGL-QARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-DVLEIEV 79 (137)
T ss_pred EEEEEEE-EeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-CEEEEEE
Confidence 3578999 999999 7778999 998 1 589999999999999 99999998654 7899999
Q ss_pred EeCCCCCCC---CceeEEEEEecccccccc---CccceecCcccCCCcccceEEEEEE
Q psy3954 114 YDRDRTSKT---DRVLGKVTIQRSDLHRIS---NKEHWFPLTPVTQDSEVQGKIQIGV 165 (268)
Q Consensus 114 ~d~d~~~~~---d~~iG~~~i~l~~l~~~~---~~~~w~~L~~~~~~~~~~G~i~v~l 165 (268)
||++ ..++ |++||++.+++.++.... ....|++|..+.....+.|+|.+.+
T Consensus 80 ~D~~-~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKF-AKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EecC-CCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9987 3333 789999999999987443 3567999988877777899998875
No 147
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1.2e-16 Score=119.34 Aligned_cols=89 Identities=21% Similarity=0.248 Sum_probs=75.1
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
|+|.|++|++|+ +..|.+||||++.+... ....+|.+++++.||+|||+|.|.+.......|.|+|||++.. ++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~d 78 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSD 78 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 789999999997 55678999999999621 2346788888999999999999987655545599999999988 99
Q ss_pred eeeEEEEEeCCccCC
Q psy3954 249 VFLGEVHIPLNNKET 263 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~ 263 (268)
++||++.+++++...
T Consensus 79 d~iG~~~i~l~~~~~ 93 (124)
T cd04037 79 DLIGETVIDLEDRFF 93 (124)
T ss_pred ceeEEEEEeeccccc
Confidence 999999999988764
No 148
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.70 E-value=1.6e-16 Score=118.14 Aligned_cols=88 Identities=23% Similarity=0.267 Sum_probs=75.0
Q ss_pred EEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954 172 LMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L 247 (268)
Q Consensus 172 L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~ 247 (268)
|.|.|++|+||+. ..|.+||||++.+. .....+|+++++++||.|||.|.|.++.. ...|.|.|||++.. +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRR 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----CccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCC
Confidence 6899999999974 34679999999985 12468999999999999999999998743 23599999999998 9
Q ss_pred CeeeEEEEEeCCccCCC
Q psy3954 248 NVFLGEVHIPLNNKETS 264 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~~ 264 (268)
+++||++.++++++..+
T Consensus 77 ~~~iG~~~i~l~~l~~~ 93 (121)
T cd08401 77 DSVIGKVAIKKEDLHKY 93 (121)
T ss_pred CceEEEEEEEHHHccCC
Confidence 99999999999998753
No 149
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=1.4e-16 Score=119.68 Aligned_cols=88 Identities=25% Similarity=0.236 Sum_probs=76.9
Q ss_pred CeEEEEEceecCCC--CC--CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC
Q psy3954 170 TSLMVNVNEASGLT--QV--NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS 245 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~--~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~ 245 (268)
|.|.|.|++|++|+ +. .+.+||||++.+. ..+.+|++++++.||.|||.|.|.+.......|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~ 75 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDR 75 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCC
Confidence 57899999999997 45 6779999999986 467899999999999999999999875333459999999998
Q ss_pred C-CCeeeEEEEEeCCccC
Q psy3954 246 G-LNVFLGEVHIPLNNKE 262 (268)
Q Consensus 246 ~-~~~~lG~~~l~l~~~~ 262 (268)
. ++++||++.+++.++.
T Consensus 76 ~~~~~~lG~~~i~l~~~~ 93 (128)
T cd04024 76 FAGKDYLGEFDIALEEVF 93 (128)
T ss_pred CCCCCcceEEEEEHHHhh
Confidence 8 8999999999999886
No 150
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=1.3e-16 Score=121.85 Aligned_cols=83 Identities=20% Similarity=0.392 Sum_probs=76.5
Q ss_pred eEEEEEEEcccCccc--cCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954 54 GTLRIRIQYTADHIL--QPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~ 125 (268)
|.|+|+|+ +|++|+ +. +.+| ||+ +..+|++++++.||+|||+|.|.++.....|.|+|||++ .+++|++
T Consensus 2 G~L~V~Vi-~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d-~~~~dd~ 78 (145)
T cd04038 2 GLLKVRVV-RGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKD-TFSKDDS 78 (145)
T ss_pred eEEEEEEE-eeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECC-CCCCCCE
Confidence 78999999 999998 55 7889 998 889999999999999999999999888889999999999 7889999
Q ss_pred eEEEEEeccccccc
Q psy3954 126 LGKVTIQRSDLHRI 139 (268)
Q Consensus 126 iG~~~i~l~~l~~~ 139 (268)
||++.+++.++...
T Consensus 79 iG~a~i~l~~l~~~ 92 (145)
T cd04038 79 MGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEHHHhhhh
Confidence 99999999988743
No 151
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.69 E-value=2.8e-16 Score=118.64 Aligned_cols=96 Identities=19% Similarity=0.458 Sum_probs=84.4
Q ss_pred eEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCCC
Q psy3954 54 GTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRDR 118 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~ 118 (268)
+.|+|+|+ +|++|+ +..+.+| ||+ ..+||++++++.||.|||+|.|.+... ...|.|+|||.+
T Consensus 13 ~~l~v~i~-~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~- 90 (131)
T cd04026 13 NKLTVEVR-EAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWD- 90 (131)
T ss_pred CEEEEEEE-EeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECC-
Confidence 68999999 999999 6678899 998 368999999999999999999997764 578999999999
Q ss_pred CCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954 119 TSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT 152 (268)
Q Consensus 119 ~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 152 (268)
..+++++||++.++++++... ..+.|++|....
T Consensus 91 ~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 91 RTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 778899999999999999744 678999996644
No 152
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.69 E-value=2.9e-16 Score=117.61 Aligned_cols=90 Identities=26% Similarity=0.383 Sum_probs=75.4
Q ss_pred CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
..|.|.|++|+||+.. +.+||||++.+. + .+..+|++. ++.||.|||.|.|.+....+..+.|.|||++.. ++
T Consensus 4 ~~L~V~Vi~A~~L~~~-~~~DPYv~v~l~-~---~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 4 RSLQLNVLEAHKLPVK-HVPHPYCVISLN-E---VKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKD 77 (126)
T ss_pred eEEEEEEEEeeCCCCC-CCCCeeEEEEEC-C---EeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCC
Confidence 4689999999999864 578999999996 1 344678875 589999999999987665556699999999888 99
Q ss_pred eeeEEEEEeCCccCCCC
Q psy3954 249 VFLGEVHIPLNNKETSS 265 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~~~ 265 (268)
++||++.++++++..+.
T Consensus 78 ~~iG~v~i~l~~l~~~~ 94 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQ 94 (126)
T ss_pred CeEEEEEEEHhHccCCC
Confidence 99999999999887643
No 153
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.69 E-value=2.4e-16 Score=120.96 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=75.7
Q ss_pred eEEEEEceecC--CC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC------Cce--EEE
Q psy3954 171 SLMVNVNEASG--LT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD------PIE--LVV 238 (268)
Q Consensus 171 ~L~v~v~~a~~--L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~------~~~--l~i 238 (268)
...++|..|++ |+ +.++.+||||++++........+.+|+++++|+||+|||+|.|.++... +.. |.|
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 35667777777 45 3466799999999854445577899999999999999999999996542 333 999
Q ss_pred EEEecCCC--CCeeeEEEEEeCCccCC
Q psy3954 239 SLHHDISG--LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 239 ~V~d~~~~--~~~~lG~~~l~l~~~~~ 263 (268)
+|||++.+ +|++||++.++|+.+..
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~ 109 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLET 109 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccc
Confidence 99999886 79999999999999854
No 154
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=1.8e-16 Score=121.03 Aligned_cols=87 Identities=23% Similarity=0.266 Sum_probs=76.5
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG- 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~- 246 (268)
|.|.|.|++|++|+ +. +.+||||++.+. ..+++|++++++.||+|||.|.|.++.. ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~ 74 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFS 74 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCC
Confidence 67999999999996 44 779999999997 5679999999999999999999998654 33499999999988
Q ss_pred CCeeeEEEEEeCCccCC
Q psy3954 247 LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~~ 263 (268)
++++||++.+++..+..
T Consensus 75 ~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCEEEEEEEEHHHhhh
Confidence 89999999999988754
No 155
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.68 E-value=3.4e-16 Score=120.28 Aligned_cols=93 Identities=25% Similarity=0.435 Sum_probs=81.2
Q ss_pred ccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-E---------------------------------EeeecccCCCCC
Q psy3954 49 IIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-Q---------------------------------ILNSPSVNPVTS 91 (268)
Q Consensus 49 ~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-~---------------------------------~~~T~~~~~t~n 91 (268)
..+..+.|.|+|+ +|++|+ +..|.+| ||+ . .++|+++++++|
T Consensus 23 ~~~~~~~L~V~vi-~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 23 AEPPIFVLKVTVI-EAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred cCCCeEEEEEEEE-eccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 3455789999999 999998 7789999 998 1 268999999999
Q ss_pred CccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecC
Q psy3954 92 PFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 92 P~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
|.|||+|.|.+... ...|.|+|||.+ |++||++.++++++. ....+.|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 99999999998764 689999999987 779999999999998 4567999976
No 156
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.68 E-value=2.1e-16 Score=119.99 Aligned_cols=96 Identities=20% Similarity=0.351 Sum_probs=83.5
Q ss_pred EEEEEEcccCccc-cCCCCCC-ceE---------EEeeecccCCCCCCccCcEEEEEecCC----------------CcE
Q psy3954 56 LRIRIQYTADHIL-QPHYYED-LCT---------QILNSPSVNPVTSPFFGEEFQFDIPRR----------------FRH 108 (268)
Q Consensus 56 L~V~v~~~a~~L~-~~~~~~d-yv~---------~~~~T~~~~~t~nP~wne~f~f~v~~~----------------~~~ 108 (268)
|.|+|+ +|++|+ ...+.+| ||+ ..++|++++++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi-~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVL-ECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEE-EccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 579999 999998 4367889 998 458999999999999999999997653 568
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCC
Q psy3954 109 LAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ 153 (268)
Q Consensus 109 l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~ 153 (268)
|.|+|||.+ ..+++++||++.+++.++........|++|.+...
T Consensus 80 l~i~V~d~~-~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHAS-MVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCC-cCcCCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 999999999 67789999999999999987677899999988763
No 157
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.68 E-value=3e-16 Score=116.66 Aligned_cols=89 Identities=30% Similarity=0.362 Sum_probs=76.5
Q ss_pred CeEEEEEceecCCCCC--------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954 170 TSLMVNVNEASGLTQV--------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH 241 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~--------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~ 241 (268)
|.|.|.|++|+||+.. .|.+||||++.+. ...++|++++++.||.|||.|.|.+.......|.|+||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~ 75 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG-----AQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELF 75 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC-----CEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEE
Confidence 5689999999999732 2579999999987 46789999999999999999999986544445999999
Q ss_pred ecCCCCCeeeEEEEEeCCccCC
Q psy3954 242 HDISGLNVFLGEVHIPLNNKET 263 (268)
Q Consensus 242 d~~~~~~~~lG~~~l~l~~~~~ 263 (268)
|++..++++||++.++++++..
T Consensus 76 d~~~~~~~~iG~~~i~l~~l~~ 97 (121)
T cd08391 76 DEDPDKDDFLGRLSIDLGSVEK 97 (121)
T ss_pred ecCCCCCCcEEEEEEEHHHhcc
Confidence 9987788999999999988765
No 158
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.68 E-value=4.8e-16 Score=116.47 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=74.9
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCC
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGL 247 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~ 247 (268)
..++|+|++|++|+ +..|.+||||++.+. ....+|++++++.||+|||.|.|.+... -..|.|+|||++..+
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~~ 76 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCE-----GESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLLC 76 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEEC-----CEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCCC
Confidence 46899999999997 456789999999886 4578999999999999999999987532 223999999998778
Q ss_pred CeeeEEEEEeCCccCC
Q psy3954 248 NVFLGEVHIPLNNKET 263 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~ 263 (268)
+++||++.+++++...
T Consensus 77 d~~lG~~~~~l~~~~~ 92 (126)
T cd04046 77 DEFLGQATLSADPNDS 92 (126)
T ss_pred CCceEEEEEecccCCC
Confidence 8999999999987654
No 159
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.68 E-value=3.4e-16 Score=117.31 Aligned_cols=88 Identities=23% Similarity=0.435 Sum_probs=75.3
Q ss_pred EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CCee
Q psy3954 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LNVF 250 (268)
Q Consensus 172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~~~ 250 (268)
|.|+|++|+||+...|.+||||++.+. + ...+++|++++++.||+|||.|.|.+... -..|.|+|||++.. ++++
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~-~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMD-E--PPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEEC-C--CCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCce
Confidence 579999999998766789999999985 1 13468999999999999999999998532 33499999999988 8999
Q ss_pred eEEEEEeCCccCC
Q psy3954 251 LGEVHIPLNNKET 263 (268)
Q Consensus 251 lG~~~l~l~~~~~ 263 (268)
||++.++++++..
T Consensus 77 lG~~~i~l~~l~~ 89 (126)
T cd08678 77 LGLAIVPFDELRK 89 (126)
T ss_pred EEEEEEeHHHhcc
Confidence 9999999998765
No 160
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.68 E-value=6e-16 Score=115.72 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=88.1
Q ss_pred eEEEEEEEcccCccc-cCCCCCC-ceE-----E-EeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCce
Q psy3954 54 GTLRIRIQYTADHIL-QPHYYED-LCT-----Q-ILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~-~~~~~~d-yv~-----~-~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~ 125 (268)
..|.|+|+ +|+.++ +..+.+| ||+ + ..+|+++++++||.|||+|.|.+.. .+.|.|+|||.+ ..+.|++
T Consensus 2 ~~L~V~i~-~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~-~~~~~~~ 78 (125)
T cd04021 2 SQLQITVE-SAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHH-TLKADVL 78 (125)
T ss_pred ceEEEEEE-eeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCC-CCCCCcE
Confidence 36899999 998444 5577889 998 3 7999999999999999999999865 489999999999 7888999
Q ss_pred eEEEEEeccccccccC-----ccceecCcccCC-CcccceEEEEEE
Q psy3954 126 LGKVTIQRSDLHRISN-----KEHWFPLTPVTQ-DSEVQGKIQIGV 165 (268)
Q Consensus 126 iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~-~~~~~G~i~v~l 165 (268)
||++.++++++..... ...|+++..... .....|+|.+.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 9999999999874332 235888865442 345679988765
No 161
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.67 E-value=4.9e-16 Score=112.99 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=68.5
Q ss_pred EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEec-------C
Q psy3954 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHD-------I 244 (268)
Q Consensus 172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~-------~ 244 (268)
|.|+|.+|+||+ +.+||||++.+...+....+.+|+++++++||+|||.|.|.+. .-..|.+.|||+ |
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccccc
Confidence 679999999995 5689999999874333346799999999999999999999985 233599999998 3
Q ss_pred CC-CCeeeEEEEEeCC
Q psy3954 245 SG-LNVFLGEVHIPLN 259 (268)
Q Consensus 245 ~~-~~~~lG~~~l~l~ 259 (268)
.. +|+++|.+.+.|+
T Consensus 76 ~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 76 GEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccCcccEEEEEEEEEC
Confidence 45 8999988888764
No 162
>KOG0696|consensus
Probab=99.67 E-value=3.3e-17 Score=140.24 Aligned_cols=93 Identities=19% Similarity=0.457 Sum_probs=83.5
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCC
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRD 117 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d 117 (268)
...|.|+|. +|+||. |.+|.+| ||+ .+++|++++.++||+|||+|.|.+.+. +..|.++|||+|
T Consensus 179 ~~~l~v~i~-ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 179 RDVLTVTIK-EAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred CceEEEEeh-hhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 357899999 999997 9999999 998 688999999999999999999998877 789999999999
Q ss_pred CCCCCCceeEEEEEeccccccccCccceecC
Q psy3954 118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148 (268)
Q Consensus 118 ~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L 148 (268)
.-++++|+|..++.+++|. ..+.+.|+.|
T Consensus 258 -rTsRNDFMGslSFgisEl~-K~p~~GWyKl 286 (683)
T KOG0696|consen 258 -RTSRNDFMGSLSFGISELQ-KAPVDGWYKL 286 (683)
T ss_pred -ccccccccceecccHHHHh-hcchhhHHHH
Confidence 6889999999999999997 3456778766
No 163
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.67 E-value=5.6e-16 Score=119.08 Aligned_cols=97 Identities=31% Similarity=0.464 Sum_probs=77.6
Q ss_pred CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCc------------------------ceeeeceeccCCCCCccce
Q psy3954 169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNK------------------------SDVQKSKVKKKSHSPVFNE 222 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~------------------------~~~~kT~v~~~t~nP~~ne 222 (268)
.+.|.|+|++|++|+ +..|.+||||++.+...... ...++|+++++++||.|||
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 467889999999996 56788999999998632211 1347899999999999999
Q ss_pred EEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCC-CCCCC
Q psy3954 223 SFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKET-SSSWW 268 (268)
Q Consensus 223 ~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~-~~~~w 268 (268)
+|.|.+.......|.|+|||++ +++||++.++++++.. +...|
T Consensus 107 ~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~~d~W 150 (153)
T cd08676 107 TFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSCGLDSW 150 (153)
T ss_pred EEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCCCCCCe
Confidence 9999986433334999999986 8999999999999873 44444
No 164
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=5.5e-16 Score=115.16 Aligned_cols=90 Identities=22% Similarity=0.216 Sum_probs=75.3
Q ss_pred EEceecCCC--CCCCCCCCEEEEEEEecC--CcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC----C
Q psy3954 175 NVNEASGLT--QVNGQCDPTAMVTVHYTH--NKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS----G 246 (268)
Q Consensus 175 ~v~~a~~L~--~~~g~~dpyv~v~l~~~~--~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~----~ 246 (268)
..++|++|+ +..|.+||||++++.... .....++|++++++.||+|||+|.|.+..+....|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 458899997 556789999999998443 23457899999999999999999998765555559999999997 6
Q ss_pred -CCeeeEEEEEeCCccCCC
Q psy3954 247 -LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 247 -~~~~lG~~~l~l~~~~~~ 264 (268)
++++||++.++++++..+
T Consensus 85 ~~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSS 103 (120)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 999999999999998754
No 165
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=7.3e-16 Score=112.88 Aligned_cols=92 Identities=25% Similarity=0.365 Sum_probs=78.3
Q ss_pred CCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEecccccc-cc
Q psy3954 70 PHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR-IS 140 (268)
Q Consensus 70 ~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~-~~ 140 (268)
.+|.+| ||+ ..++|++++++.||+|||.|.|.+.+. .+.|.|+|+|.+ .. +|++||++.++|+++.. ..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~-~~-~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDR-DR-HDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECC-CC-CCCeEEEEEecHHHHHhhhh
Confidence 467889 999 357999999999999999999998876 688999999999 77 89999999999999853 34
Q ss_pred CccceecCcccCCCcccceEEEEEEEEc
Q psy3954 141 NKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 141 ~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
..+.|++|.+. ..|+|++++.|.
T Consensus 87 ~~~~w~~L~~~-----~~G~i~~~~~~~ 109 (111)
T cd04052 87 VGQQWFPLSGN-----GQGRIRISALWK 109 (111)
T ss_pred ccceeEECCCC-----CCCEEEEEEEEe
Confidence 46899999752 369999998874
No 166
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=6.1e-16 Score=115.52 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=71.4
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCc
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDR 124 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~ 124 (268)
|+|.|+ +|++|+ +..+.+| ||+ ...||+++++++||+|||+|.|.+... ...|.|+|||++ ..++|+
T Consensus 2 lrV~Vi-~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d-~~~~dd 79 (124)
T cd04037 2 VRVYVV-RARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYD-LLGSDD 79 (124)
T ss_pred EEEEEE-ECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECC-CCCCCc
Confidence 789999 999999 7778999 998 235788899999999999999997654 689999999999 788999
Q ss_pred eeEEEEEecccccc
Q psy3954 125 VLGKVTIQRSDLHR 138 (268)
Q Consensus 125 ~iG~~~i~l~~l~~ 138 (268)
+||++.+++++...
T Consensus 80 ~iG~~~i~l~~~~~ 93 (124)
T cd04037 80 LIGETVIDLEDRFF 93 (124)
T ss_pred eeEEEEEeeccccc
Confidence 99999999997763
No 167
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1e-15 Score=115.84 Aligned_cols=92 Identities=28% Similarity=0.415 Sum_probs=76.5
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEec--CCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYT--HNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG- 246 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~--~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~- 246 (268)
|.|+|++|++|+ +..|.+||||++.+... +......+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~ 80 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRLT 80 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCCC
Confidence 789999999997 44677999999999732 1123467999999999999999999998643 23499999999988
Q ss_pred CCeeeEEEEEeCCccCCC
Q psy3954 247 LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~~~ 264 (268)
++++||++.++++++..+
T Consensus 81 ~~~~iG~~~i~l~~l~~~ 98 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTE 98 (133)
T ss_pred CCCeeEEEEEEHHHCCCc
Confidence 899999999999998763
No 168
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.66 E-value=1e-15 Score=114.87 Aligned_cols=92 Identities=24% Similarity=0.387 Sum_probs=76.4
Q ss_pred eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC--
Q psy3954 171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-- 246 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-- 246 (268)
.|.|.|++|++|+ +..|.+||||++.+. ....+|++++++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~ 75 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-----KTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIK 75 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-----CEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcc
Confidence 6899999999997 556779999999985 3568999999999999999999987533 23499999998741
Q ss_pred ----------CCeeeEEEEEeCCccCCCCCCC
Q psy3954 247 ----------LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 247 ----------~~~~lG~~~l~l~~~~~~~~~w 268 (268)
.+++||++.+++.++..+...|
T Consensus 76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w 107 (127)
T cd04027 76 SRLKQKFTRESDDFLGQTIIEVRTLSGEMDVW 107 (127)
T ss_pred cccceeccccCCCcceEEEEEhHHccCCCCeE
Confidence 6899999999999887655444
No 169
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.65 E-value=1.5e-15 Score=113.76 Aligned_cols=90 Identities=18% Similarity=0.317 Sum_probs=75.7
Q ss_pred eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954 171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L 247 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~ 247 (268)
.|+|+|++|++|+ +..+.+||||++.+.. ......+|++++++.||.|||+|.|.+.......|.|+|||++.. +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~--~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~ 79 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTN--GKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK 79 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECC--CCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCC
Confidence 5889999999997 4567799999998752 223468999999999999999999998765334499999999988 8
Q ss_pred CeeeEEEEEeCCccC
Q psy3954 248 NVFLGEVHIPLNNKE 262 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~ 262 (268)
+++||++.+++..+.
T Consensus 80 ~~~iG~~~i~l~~~~ 94 (126)
T cd04043 80 HDLCGRASLKLDPKR 94 (126)
T ss_pred CceEEEEEEecCHHH
Confidence 999999999998753
No 170
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.65 E-value=1.3e-15 Score=113.38 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=74.0
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
|.|.|++|++|+ +..|.+||||++.+. + ....+|++++++.||.|||.|.|.+... ...|.|.|||++.. ++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~-~---~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD-N---EVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC-C---EeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCC
Confidence 789999999997 567789999999985 1 2357999999999999999999988542 23499999999988 89
Q ss_pred eeeEEEEEeCCccCC
Q psy3954 249 VFLGEVHIPLNNKET 263 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~ 263 (268)
++||++.++++.+..
T Consensus 77 ~~iG~~~~~~~~~~~ 91 (121)
T cd04054 77 DVIGKVSLTREVISA 91 (121)
T ss_pred CEEEEEEEcHHHhcc
Confidence 999999999887754
No 171
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=1.6e-15 Score=113.27 Aligned_cols=89 Identities=27% Similarity=0.362 Sum_probs=75.9
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccC-CCCCccceEEEEEccCCCC---ceEEEEEEec
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK-SHSPVFNESFMFDRSLGDP---IELVVSLHHD 243 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~~ne~f~f~v~~~~~---~~l~i~V~d~ 243 (268)
|.|.|+|++|++|+ +..+.+||||++.+. ...++|++.++ +.||.|||.|.|.+..... ..|.|+|||.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 75 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR-----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK 75 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC-----CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence 57999999999997 456779999999986 45678888874 8999999999999877632 3399999999
Q ss_pred CCC-CCeeeEEEEEeCCccCC
Q psy3954 244 ISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 244 ~~~-~~~~lG~~~l~l~~~~~ 263 (268)
+.+ ++++||++.+++.++..
T Consensus 76 ~~~~~d~~iG~~~i~l~~l~~ 96 (124)
T cd04049 76 DNFSDDDFIGEATIHLKGLFE 96 (124)
T ss_pred ccCCCCCeEEEEEEEhHHhhh
Confidence 988 89999999999999865
No 172
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.65 E-value=1.7e-15 Score=117.65 Aligned_cols=91 Identities=23% Similarity=0.292 Sum_probs=75.5
Q ss_pred CCeEEEEEceecCCCC--------------------------------CCCCCCCEEEEEEEecCCcceeeeceeccCCC
Q psy3954 169 PTSLMVNVNEASGLTQ--------------------------------VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSH 216 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~--------------------------------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~ 216 (268)
-|.|.|+|++|++|++ ..|.+||||++.+. + ....+|++++++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~-~---~~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA-G---ARVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC-C---eEeeEEEEeCCCC
Confidence 4789999999999973 23458999999986 1 2346999999999
Q ss_pred CCccceEEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCCC
Q psy3954 217 SPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 217 nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~ 264 (268)
||+|||+|.|.+... ...|.|+|||++..++++||++.++++++..+
T Consensus 82 nP~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g 128 (158)
T cd04015 82 NPVWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSG 128 (158)
T ss_pred CCccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCC
Confidence 999999999987543 34599999999877778999999999998764
No 173
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=6e-16 Score=114.95 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=76.5
Q ss_pred ccCccc--cCCCCCC-ceE-----E-------EeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCC----CCC
Q psy3954 63 TADHIL--QPHYYED-LCT-----Q-------ILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRT----SKT 122 (268)
Q Consensus 63 ~a~~L~--~~~~~~d-yv~-----~-------~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~----~~~ 122 (268)
+|++|+ +..+.+| ||+ . .+||+++++++||+|||+|.|.+..+ ...|.|+|||++ . .++
T Consensus 8 ~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d-~~~~~~~~ 86 (120)
T cd04048 8 SCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVD-SKSKDLSD 86 (120)
T ss_pred EccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEec-CCcCCCCC
Confidence 799998 7778899 998 2 48999999999999999999986544 678999999999 6 788
Q ss_pred CceeEEEEEeccccccccCccceecCccc
Q psy3954 123 DRVLGKVTIQRSDLHRISNKEHWFPLTPV 151 (268)
Q Consensus 123 d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 151 (268)
+++||++.+++.++........|++|.+.
T Consensus 87 ~d~iG~~~i~l~~l~~~~~~~~~~~l~~~ 115 (120)
T cd04048 87 HDFLGEAECTLGEIVSSPGQKLTLPLKGG 115 (120)
T ss_pred CcEEEEEEEEHHHHhcCCCcEEEEEccCC
Confidence 99999999999999877777888888543
No 174
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.65 E-value=1e-15 Score=111.25 Aligned_cols=73 Identities=25% Similarity=0.457 Sum_probs=64.2
Q ss_pred EEEEEEcccCccccCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeC-------C
Q psy3954 56 LRIRIQYTADHILQPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDR-------D 117 (268)
Q Consensus 56 L~V~v~~~a~~L~~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~-------d 117 (268)
|.|+|+ +|+||+ +.+| ||+ .++||+++++|+||+|||+|.|.++. ...|++.|||+ |
T Consensus 1 L~V~V~-~A~~L~---~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d 75 (118)
T cd08686 1 LNVIVH-SAQGFK---QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD 75 (118)
T ss_pred CEEEEE-eCCCCC---CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence 679999 999997 5689 999 35899999999999999999999975 68999999998 4
Q ss_pred CCCCCCceeEEEEEecc
Q psy3954 118 RTSKTDRVLGKVTIQRS 134 (268)
Q Consensus 118 ~~~~~d~~iG~~~i~l~ 134 (268)
..+.|+++|++.+.|.
T Consensus 76 -~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 76 -GEGTDAIMGKGQIQLD 91 (118)
T ss_pred -ccCcccEEEEEEEEEC
Confidence 5678999998888765
No 175
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.5e-15 Score=112.70 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=76.0
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG- 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~- 246 (268)
|.|.|+|++|++|+ +..+.+||||++.+. + ....+|++++++.||.|||.|.|.+.... ..|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~-~---~~~~kT~~~~~t~~P~Wne~f~~~v~~~~-~~L~v~v~d~~~~~ 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN-G---IVKGRTVTISNTLNPVWDEVLYVPVTSPN-QKITLEVMDYEKVG 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC-C---EEeeceeEECCCcCCccCceEEEEecCCC-CEEEEEEEECCCCC
Confidence 57899999999997 456789999999985 1 35689999999999999999999876532 3599999999988
Q ss_pred CCeeeEEEEEeCCccCC
Q psy3954 247 LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~~ 263 (268)
++++||++.+++.++..
T Consensus 76 ~d~~IG~~~~~l~~l~~ 92 (120)
T cd04045 76 KDRSLGSVEINVSDLIK 92 (120)
T ss_pred CCCeeeEEEEeHHHhhC
Confidence 89999999999988865
No 176
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.64 E-value=2e-15 Score=114.56 Aligned_cols=91 Identities=44% Similarity=0.691 Sum_probs=76.8
Q ss_pred EEEEEceecCCCCC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC-------------CCce--
Q psy3954 172 LMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-------------DPIE-- 235 (268)
Q Consensus 172 L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-------------~~~~-- 235 (268)
|.|.|++|++|+.. .|.+||||++++... ....+++|++++++.||.|||+|.|.+... ++..
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999754 677999999999732 335678999999999999999999998654 2233
Q ss_pred EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 236 LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 236 l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
|.|+|||++.. ++++||++.+++.++..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~ 108 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQ 108 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccC
Confidence 99999999988 99999999999999765
No 177
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.64 E-value=2.8e-15 Score=113.31 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=74.7
Q ss_pred EEEEEceecCCC-CCCCCCCCEEEEEEEecCCc--------ceeeeceeccCCCCCcc-ceEEEEEccCCCCceEEEEEE
Q psy3954 172 LMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNK--------SDVQKSKVKKKSHSPVF-NESFMFDRSLGDPIELVVSLH 241 (268)
Q Consensus 172 L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~--------~~~~kT~v~~~t~nP~~-ne~f~f~v~~~~~~~l~i~V~ 241 (268)
..|++++|+||+ +..|.+||||++.+..+... .++++|+++++++||+| ||.|.|.+... +.|.|+||
T Consensus 3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~--~~L~v~V~ 80 (137)
T cd08691 3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT--DVLEIEVK 80 (137)
T ss_pred EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC--CEEEEEEE
Confidence 578999999997 56788999999999744332 35799999999999999 99999998533 24999999
Q ss_pred ecCCC-C---CeeeEEEEEeCCccCC
Q psy3954 242 HDISG-L---NVFLGEVHIPLNNKET 263 (268)
Q Consensus 242 d~~~~-~---~~~lG~~~l~l~~~~~ 263 (268)
|++.. + +++||++.++++++..
T Consensus 81 D~~~~~~~~~~d~lG~~~i~l~~l~~ 106 (137)
T cd08691 81 DKFAKSRPIIRRFLGKLSIPVQRLLE 106 (137)
T ss_pred ecCCCCCccCCceEEEEEEEHHHhcc
Confidence 97654 2 7999999999999864
No 178
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=2.3e-15 Score=112.41 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=77.0
Q ss_pred CeEEEEEceecCCCC---CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954 170 TSLMVNVNEASGLTQ---VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~ 246 (268)
|.|.|+|++|++|+. ..+.+||||++.+..+ ...++|++++++.||.|||.|.|.+. ..-+.|.|+|||++..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCC
Confidence 679999999999983 2456899999999721 36789999999999999999999887 2233499999999888
Q ss_pred -CCeeeEEEEEeCCccCCC
Q psy3954 247 -LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 247 -~~~~lG~~~l~l~~~~~~ 264 (268)
++++||++.+++.++...
T Consensus 78 ~~d~~iG~~~~~l~~l~~~ 96 (124)
T cd04044 78 RKDKLIGTAEFDLSSLLQN 96 (124)
T ss_pred CCCceeEEEEEEHHHhccC
Confidence 899999999999998763
No 179
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.63 E-value=2.2e-15 Score=112.34 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=74.2
Q ss_pred eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954 171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L 247 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~ 247 (268)
.|.|+|++|++|+ +..+.+||||++++. + ...++|++++++.||.|||.|.|.+.. ...|.|+|||++.. +
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~-~---~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~ 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD-G---GQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKK 74 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC-C---ccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCC
Confidence 3789999999997 556779999999985 2 456899999999999999999999864 23499999999887 3
Q ss_pred --CeeeEEEEEeCCccCC
Q psy3954 248 --NVFLGEVHIPLNNKET 263 (268)
Q Consensus 248 --~~~lG~~~l~l~~~~~ 263 (268)
+++||++.++++++..
T Consensus 75 ~~d~~lG~~~i~l~~l~~ 92 (123)
T cd08382 75 KDQGFLGCVRIRANAVLP 92 (123)
T ss_pred CCCceEeEEEEEHHHccc
Confidence 5899999999999854
No 180
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=2e-15 Score=113.25 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=72.8
Q ss_pred EceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC--CceEEEEEEecCCC-CCeeeE
Q psy3954 176 VNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVSLHHDISG-LNVFLG 252 (268)
Q Consensus 176 v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~--~~~l~i~V~d~~~~-~~~~lG 252 (268)
|++|++|+...|.+||||++++. ..+++|++++++.||+|||.|.|.+.... ...|.|+|||++.. ++++||
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFR-----GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEEC-----CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 78999998877789999999996 45689999999999999999999986542 22399999999988 899999
Q ss_pred EEEEeCCccCCC
Q psy3954 253 EVHIPLNNKETS 264 (268)
Q Consensus 253 ~~~l~l~~~~~~ 264 (268)
++.++++++..+
T Consensus 77 ~~~~~l~~l~~~ 88 (127)
T cd08373 77 SATVSLQDLVSE 88 (127)
T ss_pred EEEEEhhHcccC
Confidence 999999988653
No 181
>PLN03008 Phospholipase D delta
Probab=99.63 E-value=3.8e-15 Score=138.40 Aligned_cols=95 Identities=20% Similarity=0.347 Sum_probs=82.9
Q ss_pred CCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccc
Q psy3954 72 YYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEH 144 (268)
Q Consensus 72 ~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~ 144 (268)
+++| ||+ .+.||+++++++||+|||+|.|.+......|.|+|+|.| .++ +++||++.||++++..+...+.
T Consensus 75 ~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D-~~g-aD~IG~a~IPL~~L~~Ge~vd~ 152 (868)
T PLN03008 75 ITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDD-VFG-AQIIGTAKIPVRDIASGERISG 152 (868)
T ss_pred CCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCC-ccC-CceeEEEEEEHHHcCCCCceEE
Confidence 4679 999 467999999999999999999999987789999999999 787 5799999999999998888999
Q ss_pred eecCcccCCC-cccceEEEEEEEEc
Q psy3954 145 WFPLTPVTQD-SEVQGKIQIGVLST 168 (268)
Q Consensus 145 w~~L~~~~~~-~~~~G~i~v~l~~~ 168 (268)
|++|...... ....|+|++++.|.
T Consensus 153 Wl~Ll~~~~kp~k~~~kl~v~lqf~ 177 (868)
T PLN03008 153 WFPVLGASGKPPKAETAIFIDMKFT 177 (868)
T ss_pred EEEccccCCCCCCCCcEEEEEEEEE
Confidence 9999765433 33458999999997
No 182
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.62 E-value=3.1e-15 Score=112.35 Aligned_cols=97 Identities=27% Similarity=0.375 Sum_probs=80.3
Q ss_pred CeEEEEEceecCCCC----CCCCCCCEEEEEEEecCC-cceeeeceeccCCC-CCccceEEEEEccCCCCceEEEEEEec
Q psy3954 170 TSLMVNVNEASGLTQ----VNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSH-SPVFNESFMFDRSLGDPIELVVSLHHD 243 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~----~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~-nP~~ne~f~f~v~~~~~~~l~i~V~d~ 243 (268)
..|+|+|++|++|+. ..+.+||||++++...+. ...+++|++++++. ||.|||+|.|.+...+...|.|+|||+
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 368999999999974 356789999999975443 45678999988776 999999999998766655599999998
Q ss_pred CCCCCeeeEEEEEeCCccCCCCC
Q psy3954 244 ISGLNVFLGEVHIPLNNKETSSS 266 (268)
Q Consensus 244 ~~~~~~~lG~~~l~l~~~~~~~~ 266 (268)
+..++++||++.++++++..+..
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g~~ 104 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQGYR 104 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCceE
Confidence 77688999999999999976543
No 183
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.62 E-value=4.2e-15 Score=112.70 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=69.3
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC-----CCC----ceEEE
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL-----GDP----IELVV 238 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~-----~~~----~~l~i 238 (268)
.+|+|.|++|++|+ +..|.+||||++.+. ..+++|++++++.||.|||.|.|.+.. .++ ..|.|
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v 75 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFL-----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV 75 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEEC-----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence 36899999999996 567889999999987 567899999999999999999997421 111 23999
Q ss_pred EEEecCCC-CCeeeEEEEE
Q psy3954 239 SLHHDISG-LNVFLGEVHI 256 (268)
Q Consensus 239 ~V~d~~~~-~~~~lG~~~l 256 (268)
+|||++.. ++++||++.+
T Consensus 76 ~V~d~d~~~~d~~iG~~~i 94 (135)
T cd04017 76 ELFDQDSVGKDEFLGRSVA 94 (135)
T ss_pred EEEeCcCCCCCccceEEEe
Confidence 99999988 8999999987
No 184
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=3.8e-15 Score=109.80 Aligned_cols=89 Identities=31% Similarity=0.345 Sum_probs=75.3
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
|.|.|++|++|+ +..+.+||||++.+. + ...++|+++.++.+|.|||+|.|.+.......+.|+|||++.. ++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~-~---~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN-G---EKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC-C---CcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCC
Confidence 578999999997 345679999999985 2 3457999999999999999999998755334499999999988 89
Q ss_pred eeeEEEEEeCCccCCC
Q psy3954 249 VFLGEVHIPLNNKETS 264 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~~ 264 (268)
++||++.+++.++..+
T Consensus 77 ~~iG~~~~~l~~l~~~ 92 (115)
T cd04040 77 DLLGSAYIDLSDLEPE 92 (115)
T ss_pred CceEEEEEEHHHcCCC
Confidence 9999999999887664
No 185
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.61 E-value=1.4e-14 Score=108.69 Aligned_cols=107 Identities=20% Similarity=0.331 Sum_probs=86.5
Q ss_pred EEEEEEEcccCccc--c--CCCCCC-ceE-E----------EeeecccCCCC-CCccCcEEEEEecCC-CcEEEEEEEeC
Q psy3954 55 TLRIRIQYTADHIL--Q--PHYYED-LCT-Q----------ILNSPSVNPVT-SPFFGEEFQFDIPRR-FRHLAVYAYDR 116 (268)
Q Consensus 55 ~L~V~v~~~a~~L~--~--~~~~~d-yv~-~----------~~~T~~~~~t~-nP~wne~f~f~v~~~-~~~l~~~v~d~ 116 (268)
.|+|+|+ +|++|+ + ..+.+| ||+ . ..||+++.++. ||.|||+|.|.+... ...|.|+|||.
T Consensus 3 ~l~v~vi-~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKII-SGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEE-eeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 6899999 999999 4 367888 998 1 26899988776 999999999997755 46799999999
Q ss_pred CCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEE
Q psy3954 117 DRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 117 d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
+ .. ++++||.+.++++++.. ...|++|..........|.|.+.+.+
T Consensus 82 ~-~~-~~~~iG~~~~~l~~l~~---g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 D-SG-DDDFLGQACLPLDSLRQ---GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred C-CC-CCcEeEEEEEEhHHhcC---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 9 56 88999999999999853 34678887655444456899888764
No 186
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.60 E-value=8.6e-15 Score=110.60 Aligned_cols=89 Identities=24% Similarity=0.369 Sum_probs=74.5
Q ss_pred CCeEEEEEceecCCCC--C----------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceE
Q psy3954 169 PTSLMVNVNEASGLTQ--V----------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIEL 236 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~--~----------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l 236 (268)
.|.|.|+|++|++|+. . .|.+||||++.+. + ....+|++++++.||.|||+|.|.+. +...|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~-~---~~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l 76 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD-D---THIGKTSTKPKTNSPVWNEEFTTEVH--NGRNL 76 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC-C---EEEeEEeEcCCCCCCCcceeEEEEcC--CCCEE
Confidence 3679999999999963 2 2568999999986 1 23468999999999999999999986 22349
Q ss_pred EEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 237 VVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 237 ~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
.|.|||++.. ++++||++.++|+++..
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence 9999999887 89999999999998875
No 187
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=2.9e-15 Score=112.05 Aligned_cols=90 Identities=21% Similarity=0.320 Sum_probs=75.6
Q ss_pred eEEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceecc-CCCCCccceEEEEEccCCCC----ceEEEEEEec
Q psy3954 171 SLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFNESFMFDRSLGDP----IELVVSLHHD 243 (268)
Q Consensus 171 ~L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~~ne~f~f~v~~~~~----~~l~i~V~d~ 243 (268)
.|.|+|++|++|+. ..+.+||||++++.. ..+++|++.. ++.||.|||.|.|.+....+ ..|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 37899999999984 457799999999971 2567888875 58999999999999977653 3399999999
Q ss_pred CCC-CCeeeEEEEEeCCccCCC
Q psy3954 244 ISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 244 ~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
+.+ ++++||++.+++.++..+
T Consensus 77 ~~~~~~~~lG~~~i~l~~l~~~ 98 (125)
T cd04051 77 RPSLGDKLIGEVRVPLKDLLDG 98 (125)
T ss_pred CCCCCCCcEEEEEEEHHHhhcc
Confidence 887 899999999999998763
No 188
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.59 E-value=1.3e-14 Score=106.15 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=72.1
Q ss_pred EEEEceecCCC--CCCCCCCCEEEEEEEecC-CcceeeeceeccCCCCCccceEEEEEcc---CCCCce-EEEEEEecCC
Q psy3954 173 MVNVNEASGLT--QVNGQCDPTAMVTVHYTH-NKSDVQKSKVKKKSHSPVFNESFMFDRS---LGDPIE-LVVSLHHDIS 245 (268)
Q Consensus 173 ~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~-~~~~~~kT~v~~~t~nP~~ne~f~f~v~---~~~~~~-l~i~V~d~~~ 245 (268)
.+..++|++|+ +..|.+||||++++.... .....++|++++++.||+|| .|.|.+. ..+... |.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 45567999997 556789999999987332 23457999999999999999 6777643 222233 9999999998
Q ss_pred C-CCeeeEEEEEeCCccCCC
Q psy3954 246 G-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 246 ~-~~~~lG~~~l~l~~~~~~ 264 (268)
. ++++||++.++++++...
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcC
Confidence 8 899999999999988754
No 189
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.59 E-value=8.3e-15 Score=109.38 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=77.7
Q ss_pred eEEEEEceecCCC--C--CCCC--CCCEEEEEEEecCCcceeeeceeccCCCC--CccceEEEEEccC------------
Q psy3954 171 SLMVNVNEASGLT--Q--VNGQ--CDPTAMVTVHYTHNKSDVQKSKVKKKSHS--PVFNESFMFDRSL------------ 230 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~--~~g~--~dpyv~v~l~~~~~~~~~~kT~v~~~t~n--P~~ne~f~f~v~~------------ 230 (268)
.|+|.|.+|+|++ + ..|. +||||++.+.+. ...+++|.+..+++| |.||++|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~ 78 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK 78 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence 4789999999965 2 3553 999999999843 456799999999999 9999999998765
Q ss_pred ---------CCCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCCC
Q psy3954 231 ---------GDPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETSS 265 (268)
Q Consensus 231 ---------~~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~~ 265 (268)
+.+.. |.++|||.|.+ +|++||++.++|..+..+.
T Consensus 79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 33333 99999999999 9999999999999987643
No 190
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2.2e-14 Score=106.03 Aligned_cols=91 Identities=24% Similarity=0.378 Sum_probs=73.8
Q ss_pred EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-~~ 248 (268)
|.|+|++|++|+.. |.+||||++.+. + ...++|+++++ .||.|||+|.|.++..++.. |.|.+||.+.. ++
T Consensus 2 L~v~vi~a~~l~~~-~~~dpyv~v~~~-~---~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK-GTRDPYCTVSLD-Q---VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC-CCCCceEEEEEC-C---EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999876 889999999996 1 24578999988 99999999999998766554 88889998776 77
Q ss_pred eeeEEEEEeCCccCCCCCCC
Q psy3954 249 VFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~~~~~w 268 (268)
..+|.+.|...........|
T Consensus 76 ~~~g~v~l~~~~~~~~~~~w 95 (117)
T cd08383 76 IVIGKVALSKLDLGQGKDEW 95 (117)
T ss_pred eEEEEEEecCcCCCCcceeE
Confidence 88898887766665544444
No 191
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.57 E-value=1.5e-14 Score=100.16 Aligned_cols=82 Identities=33% Similarity=0.414 Sum_probs=71.7
Q ss_pred EEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
|.|.|++|++|+. ..+.+|||+++.+..... ..++|++++++.+|.|||.|.|.+.....+.|.|+|||++.. ++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~ 78 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKD 78 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCC
Confidence 6899999999984 466799999999983222 679999999999999999999998877777799999999988 79
Q ss_pred eeeEEEE
Q psy3954 249 VFLGEVH 255 (268)
Q Consensus 249 ~~lG~~~ 255 (268)
++||++.
T Consensus 79 ~~iG~~~ 85 (85)
T PF00168_consen 79 ELIGEVK 85 (85)
T ss_dssp EEEEEEE
T ss_pred CEEEEEC
Confidence 9999974
No 192
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.53 E-value=2.4e-14 Score=144.22 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=94.9
Q ss_pred CCCeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCCCCCC
Q psy3954 51 QDLGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRDRTSK 121 (268)
Q Consensus 51 ~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~~~~ 121 (268)
.-.|.|.|+|+ +|.||.+..+.+| ||+ ++.||++++++.||+|||+|+|.+... ++.|.|+|||+| .++
T Consensus 1977 ~~~G~L~V~V~-~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d-~f~ 2054 (2102)
T PLN03200 1977 CLPGSLTVTIK-RGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN-TFG 2054 (2102)
T ss_pred hCCcceEEEEe-eccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC-ccC
Confidence 44799999999 9999995567889 999 377899999999999999999776665 688999999999 886
Q ss_pred CCceeEEEEEeccccccccCccceecCcccCCCcccceE---EEEEEEEc
Q psy3954 122 TDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGK---IQIGVLST 168 (268)
Q Consensus 122 ~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~---i~v~l~~~ 168 (268)
+| .+|++.|++.++........||+|.+.... .|+ |++.+.|.
T Consensus 2055 kd-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 KS-SLGKVTIQIDRVVMEGTYSGEYSLNPESNK---DGSSRTLEIEFQWS 2100 (2102)
T ss_pred CC-CCceEEEEHHHHhcCceeeeeeecCccccc---CCCcceEEEEEEec
Confidence 55 899999999999988889999999863222 466 88887763
No 193
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=8.1e-14 Score=104.19 Aligned_cols=88 Identities=25% Similarity=0.285 Sum_probs=73.1
Q ss_pred CeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-C
Q psy3954 170 TSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-L 247 (268)
Q Consensus 170 ~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~ 247 (268)
..|.|+|.+|+.+. +..+.+||||++++. + ....+|++++++.||.|||.|.|.+.. .+.|.|+|||++.. +
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~-~---~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~ 75 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVD-G---QPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKA 75 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEEC-C---cccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCC
Confidence 46899999998443 346679999999986 1 136899999999999999999998753 24599999999988 8
Q ss_pred CeeeEEEEEeCCccCC
Q psy3954 248 NVFLGEVHIPLNNKET 263 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~ 263 (268)
+++||++.+++.++..
T Consensus 76 ~~~iG~~~i~l~~l~~ 91 (125)
T cd04021 76 DVLLGEASLDLSDILK 91 (125)
T ss_pred CcEEEEEEEEHHHhHh
Confidence 9999999999988754
No 194
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.45 E-value=3.7e-13 Score=98.36 Aligned_cols=74 Identities=14% Similarity=0.294 Sum_probs=64.0
Q ss_pred ccCccc--cCCCCCC-ceE-----E------EeeecccCCCCCCccCcEEEEEecC---C--CcEEEEEEEeCCCCCCCC
Q psy3954 63 TADHIL--QPHYYED-LCT-----Q------ILNSPSVNPVTSPFFGEEFQFDIPR---R--FRHLAVYAYDRDRTSKTD 123 (268)
Q Consensus 63 ~a~~L~--~~~~~~d-yv~-----~------~~~T~~~~~t~nP~wne~f~f~v~~---~--~~~l~~~v~d~d~~~~~d 123 (268)
+|++|+ +..+.+| ||+ . .++|+++++++||+|| +|.|.+.. . ...|.|+|||++ ..++|
T Consensus 8 ~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d-~~~~d 85 (110)
T cd04047 8 SGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD-SSGKH 85 (110)
T ss_pred EeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC-CCCCC
Confidence 799998 7788999 998 1 4899999999999999 78887432 1 579999999999 78899
Q ss_pred ceeEEEEEecccccc
Q psy3954 124 RVLGKVTIQRSDLHR 138 (268)
Q Consensus 124 ~~iG~~~i~l~~l~~ 138 (268)
++||++.++++++..
T Consensus 86 ~~iG~~~~~l~~l~~ 100 (110)
T cd04047 86 DLIGEFETTLDELLK 100 (110)
T ss_pred cEEEEEEEEHHHHhc
Confidence 999999999999873
No 195
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.45 E-value=3.1e-13 Score=93.52 Aligned_cols=73 Identities=21% Similarity=0.415 Sum_probs=64.2
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD 123 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d 123 (268)
|.|+|+ +|++|+ +..+..| ||+ ..++|++++++.+|.|||+|.|.+... ...|.|+|||.+ ..++|
T Consensus 1 L~v~I~-~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~-~~~~~ 78 (85)
T PF00168_consen 1 LTVTIH-SARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKD-SFGKD 78 (85)
T ss_dssp EEEEEE-EEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEET-SSSSE
T ss_pred CEEEEE-EEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECC-CCCCC
Confidence 789999 999999 5677888 998 459999999999999999999996655 566999999999 78889
Q ss_pred ceeEEEE
Q psy3954 124 RVLGKVT 130 (268)
Q Consensus 124 ~~iG~~~ 130 (268)
++||++.
T Consensus 79 ~~iG~~~ 85 (85)
T PF00168_consen 79 ELIGEVK 85 (85)
T ss_dssp EEEEEEE
T ss_pred CEEEEEC
Confidence 9999974
No 196
>KOG1326|consensus
Probab=99.43 E-value=2.8e-14 Score=132.58 Aligned_cols=89 Identities=25% Similarity=0.308 Sum_probs=73.7
Q ss_pred EEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
.+|.|.+|-+|. |.+|.+||||++.++ +....-+...+.+++||+|++.|++.+..+....+.+.|||+|.. ++
T Consensus 615 vrVyvv~A~~L~p~D~ng~adpYv~l~lG---k~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGDADPYVKLLLG---KKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred EEEEEEEeeeccccCCCCCcCceeeeeec---cchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence 568888999994 788999999999997 112236778899999999999999887666555699999999999 89
Q ss_pred eeeEEEEEeCCccCC
Q psy3954 249 VFLGEVHIPLNNKET 263 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~ 263 (268)
+.||+..++|+.-..
T Consensus 692 ~~iget~iDLEnR~~ 706 (1105)
T KOG1326|consen 692 EKIGETTIDLENRWL 706 (1105)
T ss_pred chhhceehhhhhccc
Confidence 999999999876543
No 197
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.42 E-value=9e-13 Score=98.46 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=71.5
Q ss_pred EEEEEEEcccCccc----cCCC--CCC-ceE--------EEeeecccCCCCC--CccCcEEEEEecC-------------
Q psy3954 55 TLRIRIQYTADHIL----QPHY--YED-LCT--------QILNSPSVNPVTS--PFFGEEFQFDIPR------------- 104 (268)
Q Consensus 55 ~L~V~v~~~a~~L~----~~~~--~~d-yv~--------~~~~T~~~~~t~n--P~wne~f~f~v~~------------- 104 (268)
.|+|.|. +|++++ +..| ++| ||+ .+++|.+.++++| |.||+.|.|.++.
T Consensus 1 eLRViIw-~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVW-NTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEE-ECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 3899999 999976 2244 599 999 5689999999999 9999999998666
Q ss_pred --------C---CcEEEEEEEeCCCCCCCCceeEEEEEeccccccc
Q psy3954 105 --------R---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI 139 (268)
Q Consensus 105 --------~---~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~ 139 (268)
+ ...|.++|||.| .+++|++||++.++|..+..+
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D-~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDND-KFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccccCcceEecCcEEEEEEEECc-ccCCCCcceEEEEEhhhcccc
Confidence 2 578999999999 899999999999999988643
No 198
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.40 E-value=3.5e-12 Score=90.66 Aligned_cols=94 Identities=28% Similarity=0.412 Sum_probs=77.8
Q ss_pred EEEEEceecCCCCCC--CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLTQVN--GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~~~~--g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
+.+.|++|++|.... +..+|||++.+...+ ....+|++..++.||.|||.|.|.+.......|.|+|||.+.. ++
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~ 79 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRD 79 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCC
Confidence 679999999997433 468999999998221 3578999999999999999999998765544499999999877 79
Q ss_pred eeeEEEEEeCCccCCCCCC
Q psy3954 249 VFLGEVHIPLNNKETSSSW 267 (268)
Q Consensus 249 ~~lG~~~l~l~~~~~~~~~ 267 (268)
.++|.+.+++.++..+..+
T Consensus 80 ~~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 80 DFIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred ceeEEEEEEHHHcccCccc
Confidence 9999999999999886544
No 199
>PLN02952 phosphoinositide phospholipase C
Probab=99.40 E-value=2.9e-12 Score=117.08 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=102.1
Q ss_pred eeeccccccceEEEeeeeeeccCccccccc---------ccccCCCeEEEEEEEcccCccc-cC-------CCCCC-ceE
Q psy3954 17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTA---------NQIIQDLGTLRIRIQYTADHIL-QP-------HYYED-LCT 78 (268)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~---------~~~~~~~~~L~V~v~~~a~~L~-~~-------~~~~d-yv~ 78 (268)
..++|++.|.-+.-+ .|.++|...... ....+....|.|+|+ +|.+|+ +. ....| ||+
T Consensus 427 ~m~lN~g~F~~NG~c---GYVlKP~~lr~~~~~~~~fdp~~~~~~~~~L~V~Vi-sGq~l~lp~~~~~~~~~~~~D~yV~ 502 (599)
T PLN02952 427 SLWLMHGMFRANGGC---GYLKKPDFLMKKGFHDEVFDPKKKLPVKKTLKVKVY-LGDGWRLDFSHTHFDSYSPPDFYTK 502 (599)
T ss_pred HHHhhhchhccCCCC---CceECCHHHcccCCcccccCCCCCCCccceEEEEEE-ECcccCCCCccccCCccCCCCceEE
Confidence 356788888754432 899999765432 111223468999999 999986 21 12347 887
Q ss_pred ----------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954 79 ----------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147 (268)
Q Consensus 79 ----------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~ 147 (268)
.+.+|+++.++.||+|||+|.|.+... -..|+|+|+|+| ..+.|+++|+..+|+..+..+- +|++
T Consensus 503 V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D-~~~~ddfiGq~~lPv~~Lr~Gy---R~Vp 578 (599)
T PLN02952 503 MYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYD-MSEKDDFGGQTCLPVSELRPGI---RSVP 578 (599)
T ss_pred EEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecC-CCCCCCeEEEEEcchhHhcCCc---eeEe
Confidence 567999999999999999999997665 467999999999 6778999999999999997543 5888
Q ss_pred CcccCCCcccceEEEEEEEE
Q psy3954 148 LTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 148 L~~~~~~~~~~G~i~v~l~~ 167 (268)
|.......-..-.|.+.+.+
T Consensus 579 L~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 579 LHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred CcCCCCCCCCCEEEEEEEEe
Confidence 86544332223345554443
No 200
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.40 E-value=9.7e-13 Score=96.26 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=62.4
Q ss_pred CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccC
Q psy3954 185 VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKE 262 (268)
Q Consensus 185 ~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~ 262 (268)
..|.+||||++.+. + ....+|++++++.||.|||.|.|.+....-..|.|.|||++..++++||++.++|+++.
T Consensus 9 ~~G~~dPYv~v~v~-~---~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 9 KTGLLSPYAELYLN-G---KLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLI 82 (111)
T ss_pred cCCCCCceEEEEEC-C---EEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHH
Confidence 46789999999996 1 24579999999999999999999986544344999999988778999999999998874
No 201
>PLN02223 phosphoinositide phospholipase C
Probab=99.39 E-value=3.8e-12 Score=114.15 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=100.8
Q ss_pred eeccccccceEEEeeeeeeccCccccccccc--------ccCCCeEEEEEEEcccCccc-c------CCCCCC-ceE---
Q psy3954 18 LMVNHATYKLMVKHTAYKYYLQPRKRLTANQ--------IIQDLGTLRIRIQYTADHIL-Q------PHYYED-LCT--- 78 (268)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~--------~~~~~~~L~V~v~~~a~~L~-~------~~~~~d-yv~--- 78 (268)
.-+|++.|.-+.-+ .|.++|........ .......|.|+|+ +|.+++ + .....| ||+
T Consensus 368 M~LN~G~F~~NG~C---GYVLKP~~Lr~~~~~~~FdP~~~~~~~~~L~V~Vi-sgq~~~~~~~k~~~~~s~~DpyV~VeI 443 (537)
T PLN02223 368 LWLMQGMFRANGGC---GYVKKPDFLLNAGPSGVFYPTENPVVVKILKVKIY-MGDGWIVDFKKRIGRLSKPDLYVRISI 443 (537)
T ss_pred HHhhcchhccCCCC---CceECChhhccCCcccccCCCCCcccceEEEEEEE-EcccccCCcccccCCCCCCCeEEEEEE
Confidence 34677777655544 89999986544211 1222467999999 999875 2 234568 998
Q ss_pred -------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 79 -------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 79 -------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
...+|.+..++.||+|||+|.|.+... -..|+|+|+|.| ..+.|+++|+..+|+..+..+ -++++|..
T Consensus 444 ~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D-~~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~ 519 (537)
T PLN02223 444 AGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYE-VSTADAFCGQTCLPVSELIEG---IRAVPLYD 519 (537)
T ss_pred eeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecC-CCCCCcEEEEEecchHHhcCC---ceeEeccC
Confidence 456788888899999999999997666 467999999999 778899999999999999743 24566655
Q ss_pred cCCCcccceEEEEEEEE
Q psy3954 151 VTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 151 ~~~~~~~~G~i~v~l~~ 167 (268)
.....-..-.|.+.+.+
T Consensus 520 ~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 520 ERGKACSSTMLLTRFKW 536 (537)
T ss_pred CCcCCCCCceEEEEEEe
Confidence 44332223455555443
No 202
>PLN02223 phosphoinositide phospholipase C
Probab=99.38 E-value=2.4e-12 Score=115.40 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=81.9
Q ss_pred CeEEEEEceecCCC-C------CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEe
Q psy3954 170 TSLMVNVNEASGLT-Q------VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHH 242 (268)
Q Consensus 170 ~~L~v~v~~a~~L~-~------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d 242 (268)
..|.|+|+.|.+++ + .....||||+|.+..-+.....++|.+..++.||+|||+|.|.+..+++.-|.|.|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 56889999999874 2 1233799999999844444556778888899999999999999998898889999999
Q ss_pred cCCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954 243 DISG-LNVFLGEVHIPLNNKETSSSW 267 (268)
Q Consensus 243 ~~~~-~~~~lG~~~l~l~~~~~~~~~ 267 (268)
+|.. +++++|+..+|++++..|-.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~GyR~ 514 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGIRA 514 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCcee
Confidence 9987 899999999999999987543
No 203
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.37 E-value=9.6e-13 Score=132.96 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=79.9
Q ss_pred CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-EEEEEEecCCCC
Q psy3954 169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-LVVSLHHDISGL 247 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l~i~V~d~~~~~ 247 (268)
.|.|.|+|++|.||....|.+||||++.++. ..++||++++++.||.|||.|.|.+..+.... |.|+|||+|.++
T Consensus 1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred CcceEEEEeeccccccccCCCCCeEEEEECC----CCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence 8999999999999996678899999999981 33679999999999999999998877666555 999999999986
Q ss_pred CeeeEEEEEeCCccCC
Q psy3954 248 NVFLGEVHIPLNNKET 263 (268)
Q Consensus 248 ~~~lG~~~l~l~~~~~ 263 (268)
++.+|.+.|++.++-.
T Consensus 2055 kd~~G~~~i~l~~vv~ 2070 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVM 2070 (2102)
T ss_pred CCCCceEEEEHHHHhc
Confidence 6699999999988764
No 204
>KOG0905|consensus
Probab=99.37 E-value=1e-12 Score=124.02 Aligned_cols=110 Identities=29% Similarity=0.399 Sum_probs=97.9
Q ss_pred cccceEEEEEEEEcCCeEEEEEceecCCC-CCCC-CCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEE-ccCC
Q psy3954 155 SEVQGKIQIGVLSTPTSLMVNVNEASGLT-QVNG-QCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-RSLG 231 (268)
Q Consensus 155 ~~~~G~i~v~l~~~~~~L~v~v~~a~~L~-~~~g-~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~-v~~~ 231 (268)
++..|+|.+++.|..+.|+|.|..|++|+ -.+| .+|||||.++.+++++..++||+++++|.||.|||..++. ++.+
T Consensus 1509 ~~iggqV~LsIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~ 1588 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKE 1588 (1639)
T ss_pred cccCceEEEEEEEcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchh
Confidence 45578999999999999999999999996 3333 3899999999988888889999999999999999999998 7766
Q ss_pred CCce--EEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 232 DPIE--LVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 232 ~~~~--l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
.+.. |+++||..+.. .+.++|.+.++|.+....
T Consensus 1589 ~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~ 1624 (1639)
T KOG0905|consen 1589 ILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLL 1624 (1639)
T ss_pred hhhhheeeeeeecccceeeeeeeeeeecchhhcchh
Confidence 6664 99999999888 999999999999998763
No 205
>PLN03008 Phospholipase D delta
Probab=99.36 E-value=4e-12 Score=118.62 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=62.9
Q ss_pred CCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCCCC
Q psy3954 188 QCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSS 265 (268)
Q Consensus 188 ~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~~ 265 (268)
.+||||+|.+. + .++.+|++++++.||+|||+|.|.+... ...|.|+|||+|.+++++||++.||+.++..|.
T Consensus 76 tSDPYV~I~Lg-~---~rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge 148 (868)
T PLN03008 76 TSDPYVTVVVP-Q---ATLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGE 148 (868)
T ss_pred CCCceEEEEEC-C---cceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCC
Confidence 57999999996 2 3356999999999999999999998753 235999999999997799999999999998764
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.34 E-value=7.9e-12 Score=88.52 Aligned_cols=91 Identities=27% Similarity=0.444 Sum_probs=77.4
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecC-CCcEEEEEEEeCCCCCCCCce
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPR-RFRHLAVYAYDRDRTSKTDRV 125 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~-~~~~l~~~v~d~d~~~~~d~~ 125 (268)
|.|.|+ +|++|+ ...+.++ ||. ..++|+++.++.||.|||.|.|.+.. ....|.|+||+.+ ..+.+.+
T Consensus 1 l~v~i~-~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~-~~~~~~~ 78 (102)
T cd00030 1 LRVTVI-EARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKD-RFSKDDF 78 (102)
T ss_pred CEEEEE-eeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecC-CCCCCce
Confidence 468999 999998 4455677 998 56899999999999999999999888 5789999999999 6767889
Q ss_pred eEEEEEeccccc-cccCccceecC
Q psy3954 126 LGKVTIQRSDLH-RISNKEHWFPL 148 (268)
Q Consensus 126 iG~~~i~l~~l~-~~~~~~~w~~L 148 (268)
||.+.+++.++. .......|++|
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred eEEEEEeHHHhhhcCCcCcceecC
Confidence 999999999987 55666777764
No 207
>KOG1326|consensus
Probab=99.34 E-value=4.6e-12 Score=118.12 Aligned_cols=221 Identities=20% Similarity=0.234 Sum_probs=148.3
Q ss_pred cccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE-------EEeeecccCCCCCCccCcEEEEEecCC-CcE
Q psy3954 40 PRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT-------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRH 108 (268)
Q Consensus 40 p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~-------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~ 108 (268)
|+...+-++..+..-..+|.|+ +|-+|. |.+|.+| |++ ..-+...+.+|+||+|++.|.+..... ...
T Consensus 599 pr~~~~~~~~~pi~~LvrVyvv-~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~ 677 (1105)
T KOG1326|consen 599 PRHFLDLPKEEPIKCLVRVYVV-EAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKD 677 (1105)
T ss_pred hhhhhcccccCcceeeEEEEEE-EeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhc
Confidence 3333333444555667889999 999998 8999999 999 234556889999999999999886655 688
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeccccccc--------------cCccceecCccc-----------CCC---------
Q psy3954 109 LAVYAYDRDRTSKTDRVLGKVTIQRSDLHRI--------------SNKEHWFPLTPV-----------TQD--------- 154 (268)
Q Consensus 109 l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~--------------~~~~~w~~L~~~-----------~~~--------- 154 (268)
+.++|||+| ..+.|+.||+..+.|+.--.. .....|+.-... .-.
T Consensus 678 l~v~vyd~D-~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~ 756 (1105)
T KOG1326|consen 678 LIVEVYDHD-LEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVS 756 (1105)
T ss_pred ceeEEEEee-cccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcc
Confidence 999999999 899999999999987742210 112234321100 000
Q ss_pred ---------------------------------------------------------cccceEEEEEEEEc---------
Q psy3954 155 ---------------------------------------------------------SEVQGKIQIGVLST--------- 168 (268)
Q Consensus 155 ---------------------------------------------------------~~~~G~i~v~l~~~--------- 168 (268)
.-.+|++.+-+.+.
T Consensus 757 ~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl 836 (1105)
T KOG1326|consen 757 AIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPL 836 (1105)
T ss_pred eEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCC
Confidence 00113332222221
Q ss_pred --------CCeEEEEEceecCCC--C--CCC--CCCCEEEEEEEecCCcceeeeceeccCCCC--CccceEEEEEcc---
Q psy3954 169 --------PTSLMVNVNEASGLT--Q--VNG--QCDPTAMVTVHYTHNKSDVQKSKVKKKSHS--PVFNESFMFDRS--- 229 (268)
Q Consensus 169 --------~~~L~v~v~~a~~L~--~--~~g--~~dpyv~v~l~~~~~~~~~~kT~v~~~t~n--P~~ne~f~f~v~--- 229 (268)
...++|.|..-.+.. + ..| .+|.||+-.+. +.+..+++|.+.++++. -.||-.|.|...
T Consensus 837 ~itpr~~~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~--gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ 914 (1105)
T KOG1326|consen 837 NITPRKPKKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVL--GDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLP 914 (1105)
T ss_pred CCCCCChhheeEEEEEeeccceeecCccceeeeccceEEecccc--cchhhhcccceeeeeccCCcccceeeecccccch
Confidence 556777777666663 2 122 28999999887 34456788988887763 346655555431
Q ss_pred C---------------CC-----CceEEEEEEecCCC-CCeeeEEEEEeCCccCCC
Q psy3954 230 L---------------GD-----PIELVVSLHHDISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 230 ~---------------~~-----~~~l~i~V~d~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
+ ++ ...|.|+|||.|.+ +|++||...++|+.+..+
T Consensus 915 ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p 970 (1105)
T KOG1326|consen 915 AEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP 970 (1105)
T ss_pred HhhHhhhhhhhhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence 0 11 11299999999999 999999999999988653
No 208
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.32 E-value=1.3e-11 Score=93.83 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=70.5
Q ss_pred CeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC---
Q psy3954 170 TSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG--- 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~--- 246 (268)
..|.|.|++|++|+.. .+|||.+.+. .....+|+++.++.||.|+|.|.|.... ....|.|.||+.+..
T Consensus 11 ~sL~v~V~EAk~Lp~~---~~~Y~~i~Ld----~~~vaRT~v~~~~~nP~W~E~F~f~~~~-~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 11 NSLKLWIIEAKGLPPK---KRYYCELCLD----KTLYARTTSKLKTDTLFWGEHFEFSNLP-PVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEccCCCCc---CCceEEEEEC----CEEEEEEEEEcCCCCCcceeeEEecCCC-cccEEEEEEEEccCcccc
Confidence 5689999999999753 3899999998 2345699999999999999999997543 245599999865422
Q ss_pred --CCeeeEEEEEeCCccCCC
Q psy3954 247 --LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 247 --~~~~lG~~~l~l~~~~~~ 264 (268)
++.+||.+.||+..+..+
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~ 102 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSR 102 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCC
Confidence 578999999999998764
No 209
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.30 E-value=2.5e-11 Score=110.64 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=101.7
Q ss_pred eeeccccccceEEEeeeeeeccCccccccccc---------ccCCCeEEEEEEEcccCccc--------cCCCCCC-ceE
Q psy3954 17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQ---------IIQDLGTLRIRIQYTADHIL--------QPHYYED-LCT 78 (268)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~---------~~~~~~~L~V~v~~~a~~L~--------~~~~~~d-yv~ 78 (268)
..++|++.|.-+.-+ .|.|+|........ ..+....|.|+|+ .+.+++ +.....| ||+
T Consensus 409 ~M~LN~G~F~~NG~c---GYVLKP~~lr~~~~~~~~fdp~~~~~~~~~L~V~Vi-sgq~~~l~~~~~~~~~~~~~dpyV~ 484 (581)
T PLN02222 409 SLWLMQGMFRANGGC---GYIKKPDLLLKSGSDSDIFDPKATLPVKTTLRVTIY-MGEGWYFDFRHTHFDQYSPPDFYTR 484 (581)
T ss_pred hhhhhcchhccCCCC---ceEECCHHhccCCccccccCCCCCCCccceEEEEEE-EcccccCCCCccccCCCCCCCeeEE
Confidence 356888888755533 89999976654322 1223467999999 998753 1233567 997
Q ss_pred ----------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954 79 ----------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147 (268)
Q Consensus 79 ----------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~ 147 (268)
.+.||+++.++.||+|||+|.|.+... -..|+|.|+|+| ..+.|+++|+..+|+..|..+ -+.++
T Consensus 485 Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D-~~~~ddfigq~~lPv~~Lr~G---yR~V~ 560 (581)
T PLN02222 485 VGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYD-MSEKDDFGGQTCLPVWELSQG---IRAFP 560 (581)
T ss_pred EEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECC-CCCCCcEEEEEEcchhhhhCc---cceEE
Confidence 567999999999999999999986655 578999999999 677899999999999998743 23456
Q ss_pred CcccCCCcccceEEEEEEEE
Q psy3954 148 LTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 148 L~~~~~~~~~~G~i~v~l~~ 167 (268)
|.......-..-.|.+.+.+
T Consensus 561 L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 561 LHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ccCCCcCCCCCeeEEEEEEe
Confidence 65444332223455555543
No 210
>PLN02270 phospholipase D alpha
Probab=99.30 E-value=3.8e-11 Score=112.02 Aligned_cols=113 Identities=13% Similarity=0.193 Sum_probs=96.0
Q ss_pred CeEEEEEEEcccCcccc--------------------CCCCCC-ceE------EEeeecccCCC-CCCccCcEEEEEecC
Q psy3954 53 LGTLRIRIQYTADHILQ--------------------PHYYED-LCT------QILNSPSVNPV-TSPFFGEEFQFDIPR 104 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~~--------------------~~~~~d-yv~------~~~~T~~~~~t-~nP~wne~f~f~v~~ 104 (268)
.|.|.|+|. +|++|++ ..+.+| ||+ ...||+++.+. .||.|||+|.+.+..
T Consensus 7 hg~l~~~i~-ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah 85 (808)
T PLN02270 7 HGTLHATIY-EVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH 85 (808)
T ss_pred ecceEEEEE-EcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence 489999999 9999982 124678 998 78999999885 699999999999999
Q ss_pred CCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcc-cceEEEEEEEEc
Q psy3954 105 RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSE-VQGKIQIGVLST 168 (268)
Q Consensus 105 ~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~v~l~~~ 168 (268)
.-..+.|.|.|.| .++.. +||.+.+|.+++..+...+.|+++.....+.. ...+|++++.|.
T Consensus 86 ~~~~v~f~vkd~~-~~g~~-~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~ 148 (808)
T PLN02270 86 MASNIIFTVKDDN-PIGAT-LIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYF 148 (808)
T ss_pred CcceEEEEEecCC-ccCce-EEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEE
Confidence 8899999999999 78755 99999999999998889999999976553332 234899999987
No 211
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.29 E-value=2.4e-11 Score=110.99 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=101.3
Q ss_pred eeeccccccceEEEeeeeeeccCccccccccc---c------cCCCeEEEEEEEcccCccc-c-------CCCCCC-ceE
Q psy3954 17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQ---I------IQDLGTLRIRIQYTADHIL-Q-------PHYYED-LCT 78 (268)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~---~------~~~~~~L~V~v~~~a~~L~-~-------~~~~~d-yv~ 78 (268)
..++|++.|.-+.-+ .|.++|........ . ......|.|+|+ .+.+++ + .....| ||+
T Consensus 426 ~M~LN~G~F~~NG~C---GYVLKP~~Lr~~~~~~~~fdP~~~~~~~~~L~V~Vi-sGq~~~l~~~k~~~~~~s~~DpyV~ 501 (598)
T PLN02230 426 ALWLMEGMFRANGGC---GYVKKPDFLMDAGPNGQDFYPKDNSCPKKTLKVKVC-MGDGWLLDFKKTHFDSYSPPDFFVR 501 (598)
T ss_pred HHHhhcchhccCCCC---CceECCHHhcCCCccccccCCCcCCCcCcEEEEEEE-EccCccCCCccccCCCCCCCCceEE
Confidence 356888888765543 89999986654321 1 123467999999 999875 1 123468 998
Q ss_pred ----------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceec
Q psy3954 79 ----------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147 (268)
Q Consensus 79 ----------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~ 147 (268)
...+|++..++.||+|||+|.|.+... -..|+|+|+|+| ....|+|+|+..+|+..|..+ -+.++
T Consensus 502 Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d-~~~~ddfiGQ~~lPv~~Lr~G---yR~V~ 577 (598)
T PLN02230 502 VGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHD-INEKDDFGGQTCLPVSEIRQG---IHAVP 577 (598)
T ss_pred EEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECC-CCCCCCEEEEEEcchHHhhCc---cceEe
Confidence 456899999999999999999996655 578999999999 778899999999999999743 23455
Q ss_pred CcccCCCcccceEEEEEEEE
Q psy3954 148 LTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 148 L~~~~~~~~~~G~i~v~l~~ 167 (268)
|.......-..-.|.+++.+
T Consensus 578 L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 578 LFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ccCCCcCCCCCCeeEEEEEe
Confidence 65443322223355555443
No 212
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.29 E-value=2.5e-11 Score=86.16 Aligned_cols=82 Identities=27% Similarity=0.435 Sum_probs=70.9
Q ss_pred EEEEEEcccCccc--cCCCCCC-ceE-----E---EeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q psy3954 56 LRIRIQYTADHIL--QPHYYED-LCT-----Q---ILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTD 123 (268)
Q Consensus 56 L~V~v~~~a~~L~--~~~~~~d-yv~-----~---~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d 123 (268)
|.|+|+ +|++|+ ...+..+ ||. . ..+|+++.++.||.|||+|.|.+... .+.|.|+|||.+ ..+.+
T Consensus 2 l~i~i~-~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~-~~~~~ 79 (101)
T smart00239 2 LTVKII-SARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKD-RFGRD 79 (101)
T ss_pred eEEEEE-EeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecC-CccCC
Confidence 679999 999999 3334677 998 2 68999999999999999999998887 899999999999 66678
Q ss_pred ceeEEEEEeccccccc
Q psy3954 124 RVLGKVTIQRSDLHRI 139 (268)
Q Consensus 124 ~~iG~~~i~l~~l~~~ 139 (268)
.++|.+.+++.++..+
T Consensus 80 ~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 80 DFIGQVTIPLSDLLLG 95 (101)
T ss_pred ceeEEEEEEHHHcccC
Confidence 9999999999888644
No 213
>KOG1327|consensus
Probab=99.29 E-value=2.7e-11 Score=107.82 Aligned_cols=179 Identities=17% Similarity=0.213 Sum_probs=137.1
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCC---CCCCceeEEEEEeccccccccCccceecCcccCCC
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRT---SKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD 154 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~---~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~ 154 (268)
+..||.++++.+||.|-+.|.+....+ .+.|+|.++|.+.. +...+|+|++...+.++........-+.+++. .
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~--~ 118 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG--K 118 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC--c
Confidence 677999999999999999999887776 79999999998732 35678999999999988755544444444443 2
Q ss_pred cccceEEEEEEEEc--CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCC-cceeeeceeccCCCCCccceEEEEEcc
Q psy3954 155 SEVQGKIQIGVLST--PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN-KSDVQKSKVKKKSHSPVFNESFMFDRS 229 (268)
Q Consensus 155 ~~~~G~i~v~l~~~--~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~~ne~f~f~v~ 229 (268)
....|+|.+.+.-. ......-.++|++|. +..+.+|||..++-..+.. ....++|.+++++++|.|.+ |.++
T Consensus 119 ~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~ 195 (529)
T KOG1327|consen 119 NAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSIS 195 (529)
T ss_pred cCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccc
Confidence 33467887776644 344555667789995 6788899999998874333 45689999999999999986 4444
Q ss_pred CCCCc-----e-EEEEEEecCCC-CCeeeEEEEEeCCccC
Q psy3954 230 LGDPI-----E-LVVSLHHDISG-LNVFLGEVHIPLNNKE 262 (268)
Q Consensus 230 ~~~~~-----~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~ 262 (268)
...+. . +.+.+||++.. ++++||.+..++..+.
T Consensus 196 ~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 196 LQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred hhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 33332 2 89999999988 8899999999888875
No 214
>KOG1264|consensus
Probab=99.28 E-value=1.2e-11 Score=113.10 Aligned_cols=114 Identities=20% Similarity=0.269 Sum_probs=91.9
Q ss_pred ccccccceEEEeeeeeeccCcccccccccccCC--------CeEEEEEEEcccCccc--cCCCCCCceE-----------
Q psy3954 20 VNHATYKLMVKHTAYKYYLQPRKRLTANQIIQD--------LGTLRIRIQYTADHIL--QPHYYEDLCT----------- 78 (268)
Q Consensus 20 ~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~--------~~~L~V~v~~~a~~L~--~~~~~~dyv~----------- 78 (268)
+|||.|.++.-+ .|.|+|+......-.+.. .-.|.|.|+ .||.|+ +.+..|+||.
T Consensus 1026 mNqa~F~~ngrc---GYvLqPs~Mrte~fdP~n~e~~~~l~p~~lsv~vi-gaRHL~k~gr~i~cPfVevEiiGa~~Dt~ 1101 (1267)
T KOG1264|consen 1026 MNQALFSLNGRC---GYVLQPSSMRTEKFDPMNPESQRGLLPMTLSVKVL-GARHLPKLGRSIACPFVEVEIIGAEYDTN 1101 (1267)
T ss_pred hhHHHhhcCCce---eeEecchhcccccCCCCChHHhccccceEEEEEEe-eccccccCCCCccCCcEEEEEeccccCCC
Confidence 689999888776 899999987766554222 146889999 999999 3333445665
Q ss_pred EEeeecccCCCCCCccC-cEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEecccccc
Q psy3954 79 QILNSPSVNPVTSPFFG-EEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wn-e~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~ 138 (268)
..++|.++.+.+||+|| |.|+|++..+ ...|+|.|+|.| .++...|||++.+|+..+..
T Consensus 1102 ~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD-mfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1102 KFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED-MFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred ceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc-ccCCcceeeeeecchhhhhc
Confidence 45556667788999999 9999998887 788999999999 89888899999999998864
No 215
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.27 E-value=2.2e-11 Score=111.16 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=81.4
Q ss_pred CeEEEEEceecCCC-C-------CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954 170 TSLMVNVNEASGLT-Q-------VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH 241 (268)
Q Consensus 170 ~~L~v~v~~a~~L~-~-------~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~ 241 (268)
..|.|.|+.+.+++ + .....||||+|.+..-+....+++|++..++.||.|||.|.|++..+++.-|.|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 46889999999864 1 112369999999984444455678899999999999999999998888888999999
Q ss_pred ecCCC-CCeeeEEEEEeCCccCCCCC
Q psy3954 242 HDISG-LNVFLGEVHIPLNNKETSSS 266 (268)
Q Consensus 242 d~~~~-~~~~lG~~~l~l~~~~~~~~ 266 (268)
|+|.. +++++|+..||+.++..|-.
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCccc
Confidence 99987 99999999999999988754
No 216
>PLN02952 phosphoinositide phospholipase C
Probab=99.27 E-value=2.7e-11 Score=110.84 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=81.9
Q ss_pred CeEEEEEceecCCC--CC----C--CCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954 170 TSLMVNVNEASGLT--QV----N--GQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH 241 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~----~--g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~ 241 (268)
..|.|.|+.|.+++ .. + ...||||+|.+..-+....+++|+++.++.||+|||.|.|.+..+++.-|.|.||
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 46889999998874 11 1 1259999999984444456789999999999999999999998888888999999
Q ss_pred ecCCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954 242 HDISG-LNVFLGEVHIPLNNKETSSSW 267 (268)
Q Consensus 242 d~~~~-~~~~lG~~~l~l~~~~~~~~~ 267 (268)
|+|.. .++++|++.+|++++..|..|
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~GyR~ 576 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGIRS 576 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCcee
Confidence 99988 899999999999999988654
No 217
>PLN02228 Phosphoinositide phospholipase C
Probab=99.25 E-value=7.1e-11 Score=107.46 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=102.0
Q ss_pred eeccccccceEEEeeeeeeccCccccccccc------ccCCCeEEEEEEEcccCccc-----c---CCCCCC-ceE----
Q psy3954 18 LMVNHATYKLMVKHTAYKYYLQPRKRLTANQ------IIQDLGTLRIRIQYTADHIL-----Q---PHYYED-LCT---- 78 (268)
Q Consensus 18 ~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~------~~~~~~~L~V~v~~~a~~L~-----~---~~~~~d-yv~---- 78 (268)
.++|++.|.-+.-+ .|.|+|........ ..+....|.|+|+ +|.+|+ + .....| ||+
T Consensus 392 M~lN~g~F~~NG~c---GYVLKP~~Lr~~~~~f~p~~~~p~~~~L~I~Vi-SGq~l~lp~~~~~~~~~~~~DpyV~Vei~ 467 (567)
T PLN02228 392 LWIMQGMFRANGGC---GYVKKPRILLDEHTLFDPCKRLPIKTTLKVKIY-TGEGWDLDFHLTHFDQYSPPDFFVKIGIA 467 (567)
T ss_pred HHhhcCchhhCCCC---CceeCchhhcccccccCCccCCCcCceEEEEEE-ECCccCCCCCCCCCCCCCCCCcEEEEEEE
Confidence 44688888654433 89999986554322 1223457999999 999874 1 123467 998
Q ss_pred ------EEeeecccCCCCCCcc-CcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 79 ------QILNSPSVNPVTSPFF-GEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 79 ------~~~~T~~~~~t~nP~w-ne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
..+||+++.++.||+| ||+|.|.+... -..|+|.|+|.| ..+.|+++|+..+|+..|..+ -+.++|..
T Consensus 468 G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d-~~~~d~figq~~lPv~~Lr~G---YR~VpL~~ 543 (567)
T PLN02228 468 GVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYD-NDTQNDFAGQTCLPLPELKSG---VRAVRLHD 543 (567)
T ss_pred ecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCC-CCCCCCEEEEEEcchhHhhCC---eeEEEccC
Confidence 4579999999999999 99999996665 578999999999 777899999999999998632 23456654
Q ss_pred cCCCcccceEEEEEEEEc
Q psy3954 151 VTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 151 ~~~~~~~~G~i~v~l~~~ 168 (268)
.....-...+|.+.+.+.
T Consensus 544 ~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 544 RAGKAYKNTRLLVSFALD 561 (567)
T ss_pred CCCCCCCCeEEEEEEEEc
Confidence 443332345676666553
No 218
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.22 E-value=1.2e-10 Score=82.43 Aligned_cols=87 Identities=36% Similarity=0.427 Sum_probs=73.5
Q ss_pred EEEEEceecCCCC--CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-CC
Q psy3954 172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG-LN 248 (268)
Q Consensus 172 L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~-~~ 248 (268)
|.|.|++|++|.. ..+.++|||.+.+.. ....+|++..++.||.|||.|.|.+.......|.|+||+.+.. .+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCC
Confidence 4689999999963 455689999999982 3678999999999999999999998764334499999999887 79
Q ss_pred eeeEEEEEeCCccC
Q psy3954 249 VFLGEVHIPLNNKE 262 (268)
Q Consensus 249 ~~lG~~~l~l~~~~ 262 (268)
++||.+.+++..+.
T Consensus 77 ~~ig~~~~~l~~l~ 90 (102)
T cd00030 77 DFLGEVEIPLSELL 90 (102)
T ss_pred ceeEEEEEeHHHhh
Confidence 99999999998876
No 219
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.22 E-value=6.8e-11 Score=107.85 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=80.3
Q ss_pred CeEEEEEceecCCC----C----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954 170 TSLMVNVNEASGLT----Q----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH 241 (268)
Q Consensus 170 ~~L~v~v~~a~~L~----~----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~ 241 (268)
..|.|+|+.+.+++ . .....||||+|.+..-+....+++|+++.++.||.|||.|.|.+..+++.-|.|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 45888999998742 1 122379999999974334456779999999999999999999998888888999999
Q ss_pred ecCCC-CCeeeEEEEEeCCccCCCCC
Q psy3954 242 HDISG-LNVFLGEVHIPLNNKETSSS 266 (268)
Q Consensus 242 d~~~~-~~~~lG~~~l~l~~~~~~~~ 266 (268)
|+|.. +++++|+..||++++..|-.
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCccc
Confidence 99887 89999999999999988754
No 220
>KOG0169|consensus
Probab=99.21 E-value=6.3e-11 Score=108.56 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=98.6
Q ss_pred eeeccccccceEEEeeeeeeccCccccccccccc-------CCCeEEEEEEEcccCccc---c---CCCCCC-ceE----
Q psy3954 17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQII-------QDLGTLRIRIQYTADHIL---Q---PHYYED-LCT---- 78 (268)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~-------~~~~~L~V~v~~~a~~L~---~---~~~~~d-yv~---- 78 (268)
.+-+|++.|.-+.- ..|.+.|....++...+ +..-.|.|+|+ ++.+++ + .+..+| ||.
T Consensus 575 ~l~L~~G~Fr~NGg---CGYVlKP~~L~~~~~~F~P~~~~~~~~~tL~IkI~-sGq~~~~~~~~~~~~~~~dP~v~VeI~ 650 (746)
T KOG0169|consen 575 MLDLNQGMFRANGG---CGYVLKPDFLLDSGSTFDPKSNLPPVKKTLKIKII-SGQGWLPDFGKTKFGEISDPDVYVEIA 650 (746)
T ss_pred hhhhhhhhhccCCC---ccceECcHHHcCCCCccCCCCCCCCCCceeEEEEE-ecCcccCCCCCCcccccCCCCEEEEEc
Confidence 44567777754443 38999999887733332 22236999999 999776 1 123455 444
Q ss_pred ------EEeeec-ccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcc
Q psy3954 79 ------QILNSP-SVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150 (268)
Q Consensus 79 ------~~~~T~-~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~ 150 (268)
...+|+ +..++-||.|+|+|+|.+..+ =..|+|.|+|+| ..++|+|+|+.++|+..|..+ .. -++|..
T Consensus 651 Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d-~~~~ddF~GQ~tlP~~~L~~G--yR-hVpL~~ 726 (746)
T KOG0169|consen 651 GVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYD-YIGKDDFIGQTTLPVSELRQG--YR-HVPLLS 726 (746)
T ss_pred ccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecC-CCCcccccceeeccHHHhhCc--ee-eeeecC
Confidence 577899 556678999999999997776 477999999999 888999999999999999743 22 245544
Q ss_pred cCCCcccceEEEEEEEE
Q psy3954 151 VTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 151 ~~~~~~~~G~i~v~l~~ 167 (268)
.....-..-+|.+.+.+
T Consensus 727 ~~G~~~~~asLfv~i~~ 743 (746)
T KOG0169|consen 727 REGEALSSASLFVRIAI 743 (746)
T ss_pred CCCccccceeEEEEEEE
Confidence 33222223445444443
No 221
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.18 E-value=2.6e-11 Score=81.74 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=75.0
Q ss_pred EEEEceecCCC--CC-CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-
Q psy3954 173 MVNVNEASGLT--QV-NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG- 246 (268)
Q Consensus 173 ~v~v~~a~~L~--~~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~- 246 (268)
.+++++|+||. .. ...+.-|++-.+. -.+....||+++++..||+|+|+|.|.+...+++. |.|+|+. ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~t--l~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILT--LPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEe--cCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence 58999999995 22 2335667776665 22345689999999999999999999999989988 8899998 34
Q ss_pred CCeeeEEEEEeCCccCC-CCCCC
Q psy3954 247 LNVFLGEVHIPLNNKET-SSSWW 268 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~~-~~~~w 268 (268)
+++.||.|.+++++++. +..||
T Consensus 78 RKe~iG~~sL~l~s~geeE~~HW 100 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQETDHW 100 (103)
T ss_pred ccceeeEEEeecccCCHHHhhhh
Confidence 89999999999999988 56676
No 222
>KOG1328|consensus
Probab=99.15 E-value=1.3e-11 Score=111.82 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=84.1
Q ss_pred ceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccc--cCCCCCC-ceE------------EEeeecccCCCC
Q psy3954 26 KLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL--QPHYYED-LCT------------QILNSPSVNPVT 90 (268)
Q Consensus 26 ~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~--~~~~~~d-yv~------------~~~~T~~~~~t~ 90 (268)
..|....+..|... ...|.|.|+ .|+++. |++|.+| ||+ ...||+++.+|+
T Consensus 932 ~fg~lsvr~~y~~n-------------~q~L~veVl-hA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtL 997 (1103)
T KOG1328|consen 932 QFGVLSVRAYYNGN-------------AQTLVVEVL-HAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTL 997 (1103)
T ss_pred cCCceEEEEEeecc-------------ccchhhhhh-ccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccc
Confidence 44445555556655 678999999 999997 9999999 988 678999999999
Q ss_pred CCccCcEEEEEecCC-----CcEEEEEEEeCCCCCCCCceeEEEEEeccccc
Q psy3954 91 SPFFGEEFQFDIPRR-----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH 137 (268)
Q Consensus 91 nP~wne~f~f~v~~~-----~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~ 137 (268)
||+|+|.|+|.|+.+ ...|.|+|+|+| .++.+||-|++.+.|.++.
T Consensus 998 nPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD-~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 998 NPVFDETFEFSVPPEPCSTETAMLHFTVMDHD-YLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhheeeecCccccccccceEEEEeeccc-eecccccchHHHHhhCCCC
Confidence 999999999999988 457999999999 9999999999999888775
No 223
>PLN02228 Phosphoinositide phospholipase C
Probab=99.14 E-value=2.4e-10 Score=104.05 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=80.8
Q ss_pred CeEEEEEceecCCC-----CC---CCCCCCEEEEEEEecCCcceeeeceeccCCCCCcc-ceEEEEEccCCCCceEEEEE
Q psy3954 170 TSLMVNVNEASGLT-----QV---NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVF-NESFMFDRSLGDPIELVVSL 240 (268)
Q Consensus 170 ~~L~v~v~~a~~L~-----~~---~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~-ne~f~f~v~~~~~~~l~i~V 240 (268)
..|.|+|+.|.+|+ .. ....||||+|.+..-+....+++|+++.++.||.| ||.|.|.+..+++.-|.|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 36889999999873 11 12279999999974444456789999998899999 99999999888888899999
Q ss_pred EecCCC-CCeeeEEEEEeCCccCCCCC
Q psy3954 241 HHDISG-LNVFLGEVHIPLNNKETSSS 266 (268)
Q Consensus 241 ~d~~~~-~~~~lG~~~l~l~~~~~~~~ 266 (268)
+|+|.. .++++|++.||++.+..|-.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR 537 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR 537 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee
Confidence 999877 89999999999999988754
No 224
>KOG1011|consensus
Probab=99.13 E-value=7e-11 Score=106.06 Aligned_cols=94 Identities=21% Similarity=0.373 Sum_probs=80.9
Q ss_pred CCeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954 169 PTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG 246 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~ 246 (268)
+..++++|+.|.+|. |..|.+||||.+.++ ..+++|+++...+||+|||.|.|.+-. .-+.|.++|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwded~d 367 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWDEDND 367 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeeeecC-CCceeEEEEecCccc
Confidence 678999999999995 788999999999998 778999999999999999999998753 344599999997742
Q ss_pred ------------CCeeeEEEEEeCCccCCCCCCC
Q psy3954 247 ------------LNVFLGEVHIPLNNKETSSSWW 268 (268)
Q Consensus 247 ------------~~~~lG~~~l~l~~~~~~~~~w 268 (268)
+|+|||+..|.+..+..+..-|
T Consensus 368 lksklrqkl~resddflgqtvievrtlsgemdvw 401 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVW 401 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccchhhh
Confidence 6899999999999888766555
No 225
>KOG0169|consensus
Probab=99.12 E-value=1.3e-10 Score=106.47 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=81.6
Q ss_pred eEEEEEceecCCC-CC-----CCCCCCEEEEEEEecCCcceeeece-eccCCCCCccceEEEEEccCCCCceEEEEEEec
Q psy3954 171 SLMVNVNEASGLT-QV-----NGQCDPTAMVTVHYTHNKSDVQKSK-VKKKSHSPVFNESFMFDRSLGDPIELVVSLHHD 243 (268)
Q Consensus 171 ~L~v~v~~a~~L~-~~-----~g~~dpyv~v~l~~~~~~~~~~kT~-v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~ 243 (268)
.|.|.|+.+.+++ +. ...+||||.|....-+......+|+ +..++-||.|+|.|+|++..+++.-|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 5889999999774 21 2348999999987444456678999 666888999999999999999999999999999
Q ss_pred CCC-CCeeeEEEEEeCCccCCCCCC
Q psy3954 244 ISG-LNVFLGEVHIPLNNKETSSSW 267 (268)
Q Consensus 244 ~~~-~~~~lG~~~l~l~~~~~~~~~ 267 (268)
|.. +|+|+|+..+|++++..|-.|
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRh 721 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRH 721 (746)
T ss_pred CCCCcccccceeeccHHHhhCceee
Confidence 998 899999999999999887543
No 226
>KOG1264|consensus
Probab=99.08 E-value=8.4e-10 Score=101.36 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=80.3
Q ss_pred CCeEEEEEceecCCCCC-CCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccc-eEEEEEccCCCCceEEEEEEecCC
Q psy3954 169 PTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFN-ESFMFDRSLGDPIELVVSLHHDIS 245 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~-~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~n-e~f~f~v~~~~~~~l~i~V~d~~~ 245 (268)
.-.|.|.|+.||.|++. .|.+.|||+|.+....-. ...+.|.+..+.+||+|| |.|+|.+..+++.-|.|.|+|.|.
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 46789999999999954 444679999999833333 344556677899999999 999999999998889999999999
Q ss_pred C-CCeeeEEEEEeCCccCCC
Q psy3954 246 G-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 246 ~-~~~~lG~~~l~l~~~~~~ 264 (268)
+ ...|||++..|+.++..|
T Consensus 1144 fs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cCCcceeeeeecchhhhhcc
Confidence 9 777999999999998765
No 227
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.97 E-value=1.9e-09 Score=75.98 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=63.6
Q ss_pred EEEEEEcccCccc--c---CCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCC
Q psy3954 56 LRIRIQYTADHIL--Q---PHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTD 123 (268)
Q Consensus 56 L~V~v~~~a~~L~--~---~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d 123 (268)
|.|+|. +|+++. + ..+.+| ||. ++.||++ +.||.|||+|.|.+. ....+.+.|||.. ....
T Consensus 1 L~I~V~-~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~--~~~~ 73 (109)
T cd08689 1 LTITIT-SARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKG--GDQP 73 (109)
T ss_pred CEEEEE-EEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCC--CCee
Confidence 679999 999998 3 467788 998 6888887 479999999999995 4699999999998 3456
Q ss_pred ceeEEEEEecccccc
Q psy3954 124 RVLGKVTIQRSDLHR 138 (268)
Q Consensus 124 ~~iG~~~i~l~~l~~ 138 (268)
-.||..-+.++++..
T Consensus 74 ~Pi~llW~~~sdi~E 88 (109)
T cd08689 74 VPVGLLWLRLSDIAE 88 (109)
T ss_pred cceeeehhhHHHHHH
Confidence 689999999988863
No 228
>KOG1031|consensus
Probab=98.93 E-value=2e-09 Score=95.91 Aligned_cols=109 Identities=22% Similarity=0.390 Sum_probs=88.2
Q ss_pred eEEEEEEEcccCccc---cCCCCCC-ceE-----EEeeecccCCCCCCccC-cEEEEEecCC---CcEEEEEEEeCCCCC
Q psy3954 54 GTLRIRIQYTADHIL---QPHYYED-LCT-----QILNSPSVNPVTSPFFG-EEFQFDIPRR---FRHLAVYAYDRDRTS 120 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~---~~~~~~d-yv~-----~~~~T~~~~~t~nP~wn-e~f~f~v~~~---~~~l~~~v~d~d~~~ 120 (268)
|.|.|+|. .||+|| ..+...| ||. ..++|.+..+++||.|| +-|.|+|.+. +..|.+.+.|+| ..
T Consensus 3 gkl~vki~-a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d-ty 80 (1169)
T KOG1031|consen 3 GKLGVKIK-AARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD-TY 80 (1169)
T ss_pred CcceeEEE-eccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc-cc
Confidence 67899999 999999 4567788 988 67899999999999999 5789998887 789999999999 99
Q ss_pred CCCceeEEEEEecccccccc----------CccceecCcccCCCcccceEEEEEEE
Q psy3954 121 KTDRVLGKVTIQRSDLHRIS----------NKEHWFPLTPVTQDSEVQGKIQIGVL 166 (268)
Q Consensus 121 ~~d~~iG~~~i~l~~l~~~~----------~~~~w~~L~~~~~~~~~~G~i~v~l~ 166 (268)
+.++.||++.|++..+.... -...|+++-..- ...+|+|.+-++
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti--hgirgeinvivk 134 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI--HGIRGEINVIVK 134 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec--ccccceeEEEEE
Confidence 99999999999988665321 245799885432 234677776554
No 229
>KOG2059|consensus
Probab=98.88 E-value=3e-09 Score=96.61 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=79.0
Q ss_pred CeEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954 170 TSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG- 246 (268)
Q Consensus 170 ~~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~- 246 (268)
..|.|.|.+|+||+ +..|..|||+.|.+.+ ....+|.++.+++.|.|.|.|.|.++. ...-|.|-|||.| +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~----E~v~RT~tv~ksL~PF~gEe~~~~iP~-~F~~l~fYv~D~d-~~ 78 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ----EEVCRTATVEKSLCPFFGEEFYFEIPR-TFRYLSFYVWDRD-LK 78 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecc----hhhhhhhhhhhhcCCccccceEEecCc-ceeeEEEEEeccc-cc
Confidence 46889999999998 6788899999999973 457899999999999999999999864 3445999999999 6
Q ss_pred CCeeeEEEEEeCCccCC--CCCCC
Q psy3954 247 LNVFLGEVHIPLNNKET--SSSWW 268 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~~--~~~~w 268 (268)
+|+.||.+.|.-.++.. |...|
T Consensus 79 ~D~~IGKvai~re~l~~~~~~d~W 102 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYPGKDTW 102 (800)
T ss_pred cccccceeeeeHHHHhhCCCCccc
Confidence 99999999998776644 55555
No 230
>KOG1031|consensus
Probab=98.87 E-value=3.4e-09 Score=94.43 Aligned_cols=90 Identities=23% Similarity=0.266 Sum_probs=80.1
Q ss_pred CCeEEEEEceecCCC--C-CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccc-eEEEEEccCCCCce--EEEEEEe
Q psy3954 169 PTSLMVNVNEASGLT--Q-VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFN-ESFMFDRSLGDPIE--LVVSLHH 242 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~--~-~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~n-e~f~f~v~~~~~~~--l~i~V~d 242 (268)
.|.|-|.|..||+|| | .+...|.||++.+. ...+||.+..+++||.|| +.|.|.+...++++ |+|++.|
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~-----n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-----NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEec-----ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEec
Confidence 367889999999998 3 34558999999998 778999999999999999 88999999888887 9999999
Q ss_pred cCCC-CCeeeEEEEEeCCccCC
Q psy3954 243 DISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 243 ~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
+|.. .++-||.+.|+++-+..
T Consensus 77 ~dtysandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 77 HDTYSANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred ccccccccccceeeeccChHHH
Confidence 9999 99999999999987754
No 231
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.86 E-value=1e-08 Score=72.34 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=62.9
Q ss_pred EEEEEceecCCCC-----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC
Q psy3954 172 LMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG 246 (268)
Q Consensus 172 L~v~v~~a~~L~~-----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~ 246 (268)
|.|+|..|||+.. ..+.++|||.+.+. ...+.+|++ +.||.|||.|.|++. ...++.+.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve----d~~kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~~ 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE----DVERARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGGD 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC----CEEEEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCCC
Confidence 5789999999963 24568999999997 134677777 478999999999983 344599999998655
Q ss_pred CCeeeEEEEEeCCcc
Q psy3954 247 LNVFLGEVHIPLNNK 261 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~ 261 (268)
..--||-.-+.++.+
T Consensus 72 ~~~Pi~llW~~~sdi 86 (109)
T cd08689 72 QPVPVGLLWLRLSDI 86 (109)
T ss_pred eecceeeehhhHHHH
Confidence 556788877777665
No 232
>PLN02270 phospholipase D alpha
Probab=98.72 E-value=6.1e-08 Score=90.95 Aligned_cols=91 Identities=16% Similarity=0.252 Sum_probs=75.3
Q ss_pred CCeEEEEEceecCCCCC--------------------CCCCCCEEEEEEEecCCcceeeeceeccCC-CCCccceEEEEE
Q psy3954 169 PTSLMVNVNEASGLTQV--------------------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKS-HSPVFNESFMFD 227 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~--------------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~~ne~f~f~ 227 (268)
-|.|.++|++|++|++. .+.+||||.|.+. .....+|+++.+. .||.|||+|..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEe
Confidence 47889999999999731 2458999999997 3567899999875 599999999988
Q ss_pred ccCCCCceEEEEEEecCCCCCeeeEEEEEeCCccCCC
Q psy3954 228 RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 228 v~~~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~~ 264 (268)
+... ...|.|+|.|.+.++..+||.+.||...+..|
T Consensus 83 ~ah~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g 118 (808)
T PLN02270 83 CAHM-ASNIIFTVKDDNPIGATLIGRAYIPVEEILDG 118 (808)
T ss_pred eccC-cceEEEEEecCCccCceEEEEEEEEHHHhcCC
Confidence 7543 35599999999888888999999999988765
No 233
>KOG0905|consensus
Probab=98.68 E-value=2.6e-08 Score=94.97 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=84.2
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEE-ecCC---CcEEEEEEEe
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFD-IPRR---FRHLAVYAYD 115 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~-v~~~---~~~l~~~v~d 115 (268)
.+.|.|-|. .|++|+ ..+.-+| ||+ .+.||+++++|.||.|||...+. ++.+ .+.|.+.||.
T Consensus 1523 ~~~LtImV~-H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVM-HAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred CceEEEEhh-hhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 478999999 999997 4444556 998 68899999999999999999988 6666 5899999999
Q ss_pred CCCCCCCCceeEEEEEeccccccccCccceecCccc
Q psy3954 116 RDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV 151 (268)
Q Consensus 116 ~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 151 (268)
.+ .+..+.++|.+.|+|.++...++...||+|...
T Consensus 1602 ~~-~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NG-GLLENVFLGGVNIPLLKVDLLKESVGWYNLGAC 1636 (1639)
T ss_pred cc-ceeeeeeeeeeecchhhcchhhhhcceeecccc
Confidence 99 788999999999999999888888899998643
No 234
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.60 E-value=3.2e-08 Score=66.98 Aligned_cols=86 Identities=15% Similarity=0.225 Sum_probs=67.9
Q ss_pred EEEEEcccCccc--cCCC-CCC-ceE--------EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCC
Q psy3954 57 RIRIQYTADHIL--QPHY-YED-LCT--------QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK 121 (268)
Q Consensus 57 ~V~v~~~a~~L~--~~~~-~~d-yv~--------~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~ 121 (268)
.|+|+ .+++|. ..-| ... |++ -.++|++.+...||+|+|+|.|.+... ...|.|.|+..- .
T Consensus 2 witv~-~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~---~ 77 (103)
T cd08684 2 WITVL-KCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT---P 77 (103)
T ss_pred EEEEE-EecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC---C
Confidence 57889 999998 3333 333 888 578999999999999999999997665 678999998843 5
Q ss_pred CCceeEEEEEeccccccccCccceec
Q psy3954 122 TDRVLGKVTIQRSDLHRISNKEHWFP 147 (268)
Q Consensus 122 ~d~~iG~~~i~l~~l~~~~~~~~w~~ 147 (268)
+.+.||.+.+.++++- .++..+|.+
T Consensus 78 RKe~iG~~sL~l~s~g-eeE~~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLS-TQETDHWLE 102 (103)
T ss_pred ccceeeEEEeecccCC-HHHhhhhhc
Confidence 6779999999999876 345667764
No 235
>PLN02352 phospholipase D epsilon
Probab=98.58 E-value=3.5e-07 Score=85.69 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=82.1
Q ss_pred CeEEEEEEEcccCccccC-C------CCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCCC-cEEEEEEEeCC
Q psy3954 53 LGTLRIRIQYTADHILQP-H------YYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRRF-RHLAVYAYDRD 117 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~~~-~------~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~~-~~l~~~v~d~d 117 (268)
.|.|.++|. +|+-+.+. . ...| ||+ ...|| .+..||.|||+|.+.+...- ..+.|.|.| +
T Consensus 9 hg~l~~~i~-~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-~ 83 (758)
T PLN02352 9 HGTLEATIF-DATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT-K 83 (758)
T ss_pred ccceEEEEE-EeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-C
Confidence 589999999 99844311 0 1127 998 67788 55669999999999988885 789999987 2
Q ss_pred CCCCCCceeEEEEEeccccccccC-ccceecCcccCCCcccceEEEEEEEEc
Q psy3954 118 RTSKTDRVLGKVTIQRSDLHRISN-KEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 118 ~~~~~d~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
..+||.+.+|.+++..+.. .+.|+++...........+|++++.|.
T Consensus 84 -----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 130 (758)
T PLN02352 84 -----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFR 130 (758)
T ss_pred -----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEE
Confidence 4589999999999988766 899999976553333225999999987
No 236
>KOG2060|consensus
Probab=98.53 E-value=8.9e-08 Score=81.45 Aligned_cols=183 Identities=18% Similarity=0.183 Sum_probs=117.7
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCCCCceeEEEEEeccc--ccc---------ccCcccee
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSKTDRVLGKVTIQRSD--LHR---------ISNKEHWF 146 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~--l~~---------~~~~~~w~ 146 (268)
....+.+...+.||+|+++..|..... ...++..+.-.....+ -+++.+..-+++ +.. ......|+
T Consensus 146 Sv~~~~va~~~~n~~~~~tl~~~~~~~~~~~vr~~~~~~S~~v~--i~~~~~sr~~rq~~~es~d~S~~s~~ss~g~~~~ 223 (405)
T KOG2060|consen 146 SVQQTEVARPNQNPIGKATLQLDHSEAGTKQVRSTIIGRSTEVG--IALEMRSRETRQRSLESTDGSINSLESSEGLRIL 223 (405)
T ss_pred CcccccccccccCcccccccccCCccCCceEEEeeccccceecc--ccccccchhhhcccccccccccccCCccccceec
Confidence 456677788899999999999884444 4555555441110111 122222111110 000 01122344
Q ss_pred cCccc--C--------------------CCcccceEEEEEEEEcCCeEEEEEceecCCCC---CCCCCCCEEEEEEEecC
Q psy3954 147 PLTPV--T--------------------QDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQ---VNGQCDPTAMVTVHYTH 201 (268)
Q Consensus 147 ~L~~~--~--------------------~~~~~~G~i~v~l~~~~~~L~v~v~~a~~L~~---~~g~~dpyv~v~l~~~~ 201 (268)
+.... + ......|.|++.+.-..+.+.|.|++|++|.. ....++|||+|++..++
T Consensus 224 P~~r~~sds~~~~FvDglGP~q~VgRq~la~P~mg~iq~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g 303 (405)
T KOG2060|consen 224 PGLRLPSDSPRGDFVDGLGPAQLVGRQTLAAPNMGDIQIALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENG 303 (405)
T ss_pred ccccccccCchhhhhcccCchhhhhhhhhcCcccccchhhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCC
Confidence 43221 0 01223578888877779999999999999952 23358999999999666
Q ss_pred CcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEe-cCCC-CCeeeEEEEEeCCccCCC
Q psy3954 202 NKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHH-DISG-LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 202 ~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d-~~~~-~~~~lG~~~l~l~~~~~~ 264 (268)
....+.+|+..++|++|.|.....|.-+.+ -.-|.++||- +.+. .+.|+|.+++-+.++..+
T Consensus 304 ~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls 367 (405)
T KOG2060|consen 304 FCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLS 367 (405)
T ss_pred ceecccccccccccCchhhhhhhhhccCCC-ccEEEEEEeccccccchHHHhhHHHHHhhhhccc
Confidence 666789999999999999988777753221 1119999995 6666 889999998888887664
No 237
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.50 E-value=2.7e-07 Score=67.30 Aligned_cols=92 Identities=21% Similarity=0.366 Sum_probs=69.6
Q ss_pred EEEEEEcccCccc-------cC---------CCCCCceE---------EEeeecccCCCCCCccCcEEEEEec-------
Q psy3954 56 LRIRIQYTADHIL-------QP---------HYYEDLCT---------QILNSPSVNPVTSPFFGEEFQFDIP------- 103 (268)
Q Consensus 56 L~V~v~~~a~~L~-------~~---------~~~~dyv~---------~~~~T~~~~~t~nP~wne~f~f~v~------- 103 (268)
|.|.|+ +|.+|. .. -|.+.||+ +..+|+++-++-.|.|+.+++|.++
T Consensus 1 lsv~I~-RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIH-RASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEee-hhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 467888 999987 00 11112665 7889999999999999999999876
Q ss_pred -CC--------CcEEEEEEEeCCCC---------CCCCceeEEEEEeccccc-cccCccceecC
Q psy3954 104 -RR--------FRHLAVYAYDRDRT---------SKTDRVLGKVTIQRSDLH-RISNKEHWFPL 148 (268)
Q Consensus 104 -~~--------~~~l~~~v~d~d~~---------~~~d~~iG~~~i~l~~l~-~~~~~~~w~~L 148 (268)
.. ...+.|+||+.... -..|-.||.+.||+.+|. ...+...|+++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 57899999998621 135668899999999987 45678899975
No 238
>KOG1013|consensus
Probab=98.49 E-value=1.9e-07 Score=78.17 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=68.5
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeC
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDR 116 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~ 116 (268)
...|.|+++ +|..|. |++|.+| ||. .+++|.+.++|+||+||++|.|.+.+. ...+.+.|||.
T Consensus 232 ~~~l~vt~i-Rc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 232 TPGLIVTII-RCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCceEEEEE-EeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 567899999 999998 9999999 998 678999999999999999999998887 78899999999
Q ss_pred CCCCCCCceeEEEEE
Q psy3954 117 DRTSKTDRVLGKVTI 131 (268)
Q Consensus 117 d~~~~~d~~iG~~~i 131 (268)
+ .....+++|-+..
T Consensus 311 ~-~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 311 D-IGKSNDSIGGSML 324 (362)
T ss_pred C-CCcCccCCCcccc
Confidence 9 7767888886554
No 239
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.14 E-value=5.1e-06 Score=60.71 Aligned_cols=91 Identities=23% Similarity=0.365 Sum_probs=68.4
Q ss_pred EEEEEceecCCCC---------C------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccC------
Q psy3954 172 LMVNVNEASGLTQ---------V------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSL------ 230 (268)
Q Consensus 172 L~v~v~~a~~L~~---------~------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~------ 230 (268)
|.|.|++|.+|.. . .-..++||++.+. .-.+.+.++|+++.++-.|.|+..++|+++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lS-Fl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLS-FLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEec-cCCCCceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4688999988841 1 1226999999976 2223567899999999999999999999872
Q ss_pred -------CCCc--eEEEEEEecCCC-----------CCeeeEEEEEeCCccCC
Q psy3954 231 -------GDPI--ELVVSLHHDISG-----------LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 231 -------~~~~--~l~i~V~d~~~~-----------~~~~lG~~~l~l~~~~~ 263 (268)
+.+. ++.++||+.... +|-+||.+.||+..+..
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~ 132 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLT 132 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhh
Confidence 1122 299999986532 56689999999988855
No 240
>PLN02964 phosphatidylserine decarboxylase
Probab=98.03 E-value=7.2e-06 Score=76.39 Aligned_cols=83 Identities=10% Similarity=0.206 Sum_probs=69.2
Q ss_pred cCCCeEEEEEEEcccCccccCCCCCC-ceE------EEeeecccCCCCCCccCcEEEEEecCC-CcEEEEEEEeCCCCCC
Q psy3954 50 IQDLGTLRIRIQYTADHILQPHYYED-LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR-FRHLAVYAYDRDRTSK 121 (268)
Q Consensus 50 ~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~l~~~v~d~d~~~~ 121 (268)
.+-.|.+.++++ +|+ . ...| |+. +.+||.+.++|+||+|||+..|.+... ....+|.|||.+ .++
T Consensus 50 ~~~~~~~~~~~~-~~~-~----~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s 122 (644)
T PLN02964 50 EDFSGIALLTLV-GAE-M----KFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETN-RLS 122 (644)
T ss_pred ccccCeEEEEee-hhh-h----ccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecC-CCC
Confidence 344688999999 886 2 2457 655 899999999999999999999997776 556799999999 899
Q ss_pred CCceeEEEEEeccccccc
Q psy3954 122 TDRVLGKVTIQRSDLHRI 139 (268)
Q Consensus 122 ~d~~iG~~~i~l~~l~~~ 139 (268)
.++.+|.+.+++.++...
T Consensus 123 ~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred HHHhhhheeecHhhccHH
Confidence 999999999988776643
No 241
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.03 E-value=0.0011 Score=57.52 Aligned_cols=197 Identities=16% Similarity=0.197 Sum_probs=129.2
Q ss_pred EEEEEEcccCccccCCCCCC-ceE-----EEeeecccCCCCCCccCcEEEEEecCC--------CcEEEEEEEeCCCCCC
Q psy3954 56 LRIRIQYTADHILQPHYYED-LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRR--------FRHLAVYAYDRDRTSK 121 (268)
Q Consensus 56 L~V~v~~~a~~L~~~~~~~d-yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~--------~~~l~~~v~d~d~~~~ 121 (268)
+.|.|+ +|++.+.. ...+ .|. +...|..+..+-.|.||.+..+++... ...|++++|..|..-+
T Consensus 2 ivl~i~-egr~F~~~-~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~ 79 (340)
T PF12416_consen 2 IVLSIL-EGRNFPQR-PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG 79 (340)
T ss_pred EEEEEe-cccCCCCC-CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence 578999 99999822 1233 444 788899999999999999999987654 5779999998873345
Q ss_pred CCceeEEEEEecccc---ccc--cCccceecCcccCCC-cccceEEEEEEEEc---------------------------
Q psy3954 122 TDRVLGKVTIQRSDL---HRI--SNKEHWFPLTPVTQD-SEVQGKIQIGVLST--------------------------- 168 (268)
Q Consensus 122 ~d~~iG~~~i~l~~l---~~~--~~~~~w~~L~~~~~~-~~~~G~i~v~l~~~--------------------------- 168 (268)
+.+.||.+.++|+.. ..+ .....|++|-..... ....-+|.+.+..+
T Consensus 80 ~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~~ 159 (340)
T PF12416_consen 80 KRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVPP 159 (340)
T ss_pred cceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCcc
Confidence 667999999999988 433 456789998554211 11233444444433
Q ss_pred -------------------------------CCeEEEEEceecCCCCC-----C---CCCCCEEEEEEEecCCcceeeec
Q psy3954 169 -------------------------------PTSLMVNVNEASGLTQV-----N---GQCDPTAMVTVHYTHNKSDVQKS 209 (268)
Q Consensus 169 -------------------------------~~~L~v~v~~a~~L~~~-----~---g~~dpyv~v~l~~~~~~~~~~kT 209 (268)
...|.|++..|.||... . +...-|....+. .....|
T Consensus 160 ~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ysll-----Gn~Vt~ 234 (340)
T PF12416_consen 160 PNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLL-----GNDVTT 234 (340)
T ss_pred cccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEec-----CcEeEe
Confidence 33466777778877411 1 123445555555 234566
Q ss_pred eeccCCCCCccc--eEEEEEccC---------CCCceEEEEEEecCCCCCeeeEEEEEeCCccCC
Q psy3954 210 KVKKKSHSPVFN--ESFMFDRSL---------GDPIELVVSLHHDISGLNVFLGEVHIPLNNKET 263 (268)
Q Consensus 210 ~v~~~t~nP~~n--e~f~f~v~~---------~~~~~l~i~V~d~~~~~~~~lG~~~l~l~~~~~ 263 (268)
.......+|.|- +...+.+.. .+...|.|-++- .+..||.+.+++..+..
T Consensus 235 ~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 235 EPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred eeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----CCcEEEEEEEEhhhccC
Confidence 666777778773 333355532 222237777776 47789999999988854
No 242
>KOG3837|consensus
Probab=97.96 E-value=1.2e-05 Score=69.43 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=86.7
Q ss_pred eEEEEEEEcccCccccCCCC--CC-ceE----------EEeeecccCCCCCCccCcEEEEEecCC------------CcE
Q psy3954 54 GTLRIRIQYTADHILQPHYY--ED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRR------------FRH 108 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~~~~~~--~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~------------~~~ 108 (268)
..|.+.|+ ++.+++-.+|. .| |+. ++.+|.+++.|.+|.|+|.|.+.+... ...
T Consensus 367 ~elel~iv-rg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIV-RGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHh-hcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 45778888 88888823333 34 777 678899999999999999999998773 356
Q ss_pred EEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 109 LAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 109 l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
+.|++|+..+.+.+|.++|.+.+.|..|...-+....++|.... ..+.|.|.+.+...
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGR--K~vGGkLevKvRiR 503 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGR--KAVGGKLEVKVRIR 503 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccc--cccCCeeEEEEEEe
Confidence 99999999967788999999999999888666666777775433 34568888777653
No 243
>PLN02964 phosphatidylserine decarboxylase
Probab=97.74 E-value=5.7e-05 Score=70.54 Aligned_cols=86 Identities=12% Similarity=0.068 Sum_probs=70.6
Q ss_pred cCCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCCC-
Q psy3954 168 TPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDISG- 246 (268)
Q Consensus 168 ~~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~~- 246 (268)
..|.+.++++.|+ ++ ..|||..+... + .++++|.+.++|.||+||+...|.+...+..-..|+|||.+.+
T Consensus 52 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~-g---~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 52 FSGIALLTLVGAE--MK---FKDKWLACVSF-G---EQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred ccCeEEEEeehhh--hc---cCCcEEEEEEe-c---ceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 3888999999988 22 25888665544 1 6789999999999999999988888776666689999999999
Q ss_pred CCeeeEEEEEeCCccC
Q psy3954 247 LNVFLGEVHIPLNNKE 262 (268)
Q Consensus 247 ~~~~lG~~~l~l~~~~ 262 (268)
.++++|.+.++|..+.
T Consensus 123 ~n~lv~~~e~~~t~f~ 138 (644)
T PLN02964 123 KNTLVGYCELDLFDFV 138 (644)
T ss_pred HHHhhhheeecHhhcc
Confidence 9999999999876553
No 244
>PLN02352 phospholipase D epsilon
Probab=97.73 E-value=0.00011 Score=69.26 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCeEEEEEceecCCCCC-------CCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEE
Q psy3954 169 PTSLMVNVNEASGLTQV-------NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLH 241 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~-------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~ 241 (268)
-|.|.++|++|+-+... ....||||.|.+. .....+| .+..||.|+|+|..++......++.|+|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk 81 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG----NKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLK 81 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC----CcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEe
Confidence 46778888888744221 1124999999997 2345677 55669999999998886544345999999
Q ss_pred ecCCCCCeeeEEEEEeCCccCCC
Q psy3954 242 HDISGLNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 242 d~~~~~~~~lG~~~l~l~~~~~~ 264 (268)
| +-.+||.+.||...+..|
T Consensus 82 ~----~~~~ig~~~~p~~~~~~g 100 (758)
T PLN02352 82 T----KCSILGRFHIQAHQIVTE 100 (758)
T ss_pred c----CCeEEEEEEEEHHHhhCC
Confidence 8 478999999999988775
No 245
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.68 E-value=0.00041 Score=54.61 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954 169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI 244 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~ 244 (268)
...+.|+|+.+.+|.-.....+.||++.+..++.. .....|+.+....++.|||.+.|++...++.. |.|+||+..
T Consensus 7 ~~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 7 EEKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCCEEEEEEEeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 35688999999999753444788999988866543 23456666665677999999999998877776 999999864
Q ss_pred CC-----------------CCeeeEEEEEeCCcc
Q psy3954 245 SG-----------------LNVFLGEVHIPLNNK 261 (268)
Q Consensus 245 ~~-----------------~~~~lG~~~l~l~~~ 261 (268)
.. ....||.+.++|-+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 32 247999999987664
No 246
>KOG2060|consensus
Probab=97.67 E-value=2.1e-05 Score=67.26 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=84.3
Q ss_pred CCCeEEEEEEEcccCccc---cCCCCCC-ceE----------EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeC
Q psy3954 51 QDLGTLRIRIQYTADHIL---QPHYYED-LCT----------QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDR 116 (268)
Q Consensus 51 ~~~~~L~V~v~~~a~~L~---~~~~~~d-yv~----------~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~ 116 (268)
...|.|.|.|+ +|++|. .....++ ||+ .+.+|+...+|++|.+-+...|+-++....|.+.||-.
T Consensus 266 d~~g~l~vEii-~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 266 DSKGDLEVEII-RARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred cccCceeEEEE-ecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 34689999999 999998 3333566 888 67889999999999999999999888889999999965
Q ss_pred CCCCCCCceeEEEEEecccccccc-CccceecCcccC
Q psy3954 117 DRTSKTDRVLGKVTIQRSDLHRIS-NKEHWFPLTPVT 152 (268)
Q Consensus 117 d~~~~~d~~iG~~~i~l~~l~~~~-~~~~w~~L~~~~ 152 (268)
-+.+.++.|+|.+.+-+.++.... ....|++|-+..
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 436778899999999999998655 678999986654
No 247
>KOG1265|consensus
Probab=97.67 E-value=0.0001 Score=69.36 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCC--cceeeeceecc-CCCCCccc-eEEEEE-ccCCCCceEEEEEEec
Q psy3954 169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHN--KSDVQKSKVKK-KSHSPVFN-ESFMFD-RSLGDPIELVVSLHHD 243 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~--~~~~~kT~v~~-~t~nP~~n-e~f~f~-v~~~~~~~l~i~V~d~ 243 (268)
.+.+.|+|+.+.=|.+.. ...||.|.|..-+. ..+.++|+++. ++.||+|+ |.|.|. |-.+++..|.|.||+.
T Consensus 702 A~t~sV~VISgqFLSdrk--vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK--VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EeeEEEEEEeeeeccccc--cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 677899999998886543 34899999974333 33567787775 78899998 568886 6677888899999997
Q ss_pred CCCCCeeeEEEEEeCCccCCCCCC
Q psy3954 244 ISGLNVFLGEVHIPLNNKETSSSW 267 (268)
Q Consensus 244 ~~~~~~~lG~~~l~l~~~~~~~~~ 267 (268)
+..+||+=.+|++.+..|-.|
T Consensus 780 ---ggK~ig~RIlpvd~l~~GYrh 800 (1189)
T KOG1265|consen 780 ---GGKFIGQRILPVDGLNAGYRH 800 (1189)
T ss_pred ---CCceeeeeccchhcccCccee
Confidence 678999999999999987654
No 248
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.65 E-value=0.00049 Score=53.21 Aligned_cols=92 Identities=14% Similarity=0.017 Sum_probs=67.4
Q ss_pred CCeEEEEEceecCCCCCCCCCCCEEEEEEEecCCcc-eeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954 169 PTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKS-DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI 244 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~ 244 (268)
...+.|.|+.+.+++-. ..++.||++.+..++... ....|+.+.. .++.|||.+.|++...++.. |.|+||+..
T Consensus 7 ~~~~~v~i~~~~~~~~~-~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 7 NSNLRIKILCATYVNVN-DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCCeEEEEEeeccCCCC-CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 45688999999998732 347999999988654422 2334554443 67999999999988777766 999999965
Q ss_pred CC-----CCeeeEEEEEeCCccC
Q psy3954 245 SG-----LNVFLGEVHIPLNNKE 262 (268)
Q Consensus 245 ~~-----~~~~lG~~~l~l~~~~ 262 (268)
.. ....||.+.++|-+..
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCC
Confidence 42 2357999999886643
No 249
>KOG1265|consensus
Probab=97.54 E-value=0.00012 Score=68.99 Aligned_cols=108 Identities=14% Similarity=0.288 Sum_probs=78.9
Q ss_pred ccccccceEEEeeeeeeccCcccccccccccCC----------CeEEEEEEEcccCccccCCCCCC-ceE----------
Q psy3954 20 VNHATYKLMVKHTAYKYYLQPRKRLTANQIIQD----------LGTLRIRIQYTADHILQPHYYED-LCT---------- 78 (268)
Q Consensus 20 ~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~----------~~~L~V~v~~~a~~L~~~~~~~d-yv~---------- 78 (268)
+|.+.|..+.-. .|.+.|.-...+...+.. .+.+.|+|+ ++.-|.+. ... ||.
T Consensus 662 lN~g~FEyNG~s---GYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VI-SgqFLSdr--kvgtyVEVdmfgLP~Dt 735 (1189)
T KOG1265|consen 662 LNMGMFEYNGGS---GYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVI-SGQFLSDR--KVGTYVEVDMFGLPTDT 735 (1189)
T ss_pred hhhhheeecCCc---cceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEE-eeeecccc--ccCceEEEEecCCCchh
Confidence 466666665554 888888876666654322 356889999 99888622 223 665
Q ss_pred --EEeeecccCC-CCCCccCc-EEEEE--ecCCCcEEEEEEEeCCCCCCCCceeEEEEEecccccc
Q psy3954 79 --QILNSPSVNP-VTSPFFGE-EFQFD--IPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR 138 (268)
Q Consensus 79 --~~~~T~~~~~-t~nP~wne-~f~f~--v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~ 138 (268)
..+||+++.+ +.||+|+| .|.|. +-++-..|+|.||+.+ ..+||+=.+|+..+..
T Consensus 736 ~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg-----gK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 736 IRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG-----GKFIGQRILPVDGLNA 796 (1189)
T ss_pred hhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC-----CceeeeeccchhcccC
Confidence 6788988875 68999986 68887 3344688999999998 3489999999998864
No 250
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.46 E-value=0.00082 Score=52.10 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecCCC-CCeeeEEEEEeCCc
Q psy3954 186 NGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDISG-LNVFLGEVHIPLNN 260 (268)
Q Consensus 186 ~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~~~-~~~~lG~~~l~l~~ 260 (268)
...++.||.+.+..++.. .....|+.+.-+..+.|||...|++...++.. |.|+||+.+.. +...||.+.+++-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 344789999999865442 23456666666677999999999998887776 99999998665 67899999999876
Q ss_pred c
Q psy3954 261 K 261 (268)
Q Consensus 261 ~ 261 (268)
.
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 5
No 251
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.40 E-value=0.0013 Score=50.98 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=67.3
Q ss_pred CeEEEEEceecCCCC-CCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954 170 TSLMVNVNEASGLTQ-VNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI 244 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~-~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~ 244 (268)
..+.|.+....++.. .....+.||++.+..++.. .....|.......++.|||.+.|++...++.. |.|+||+.+
T Consensus 8 ~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 8 FNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 456777777777754 3445788999988865542 23344544444467999999999987777765 999999975
Q ss_pred CC---CCeeeEEEEEeCCccC
Q psy3954 245 SG---LNVFLGEVHIPLNNKE 262 (268)
Q Consensus 245 ~~---~~~~lG~~~l~l~~~~ 262 (268)
.. ....||.+.++|-+..
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc
Confidence 54 3589999999987653
No 252
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.31 E-value=0.005 Score=47.15 Aligned_cols=116 Identities=17% Similarity=0.184 Sum_probs=79.0
Q ss_pred cCCCeEEEEEEEcccCccccC-C---CCCC--ceE------EEeeecccCCCCCCccCcEEEEEecCC------------
Q psy3954 50 IQDLGTLRIRIQYTADHILQP-H---YYED--LCT------QILNSPSVNPVTSPFFGEEFQFDIPRR------------ 105 (268)
Q Consensus 50 ~~~~~~L~V~v~~~a~~L~~~-~---~~~d--yv~------~~~~T~~~~~t~nP~wne~f~f~v~~~------------ 105 (268)
.+....|.++|. .++...+. . +..+ +.. +.++|+.+..+.+|.|+|.|-|+++..
T Consensus 5 ~~~~~yL~l~vl-gGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 5 DPGRRYLHLRVL-GGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CCCceEEEEEEe-CchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 344678999999 98877611 1 2222 222 899999999999999999999997765
Q ss_pred --CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCC---cccceEEEEEEEE
Q psy3954 106 --FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQD---SEVQGKIQIGVLS 167 (268)
Q Consensus 106 --~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~---~~~~G~i~v~l~~ 167 (268)
.+.+++.|.-.| ..+...++|.-.+.-+.+........++.++..... ....|-|.+++..
T Consensus 84 s~~~pihivli~~d-~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lEL 149 (156)
T PF15627_consen 84 SISDPIHIVLIRTD-PSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLEL 149 (156)
T ss_pred cCCCceEEEEEEec-CCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEe
Confidence 356888888888 565667889888876666544443334444332222 2256877777654
No 253
>KOG3837|consensus
Probab=97.10 E-value=0.00035 Score=60.68 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=75.7
Q ss_pred CCeEEEEEceecCCCCCCCC--CCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCC-CC----c----e--
Q psy3954 169 PTSLMVNVNEASGLTQVNGQ--CDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG-DP----I----E-- 235 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~~~~g~--~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~-~~----~----~-- 235 (268)
...|.+.|.++.+++..+|. .|.||++.+........+.+|.+++.+.+|.|+|.|...+... .. . .
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 66788899999998755544 6899999887554456678999999999999999999887641 11 1 1
Q ss_pred EEEEEEecCCC--CCeeeEEEEEeCCccCC
Q psy3954 236 LVVSLHHDISG--LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 236 l~i~V~d~~~~--~~~~lG~~~l~l~~~~~ 263 (268)
+.|++++...+ +|.++|.+.+.|.-+..
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len 475 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILEN 475 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhc
Confidence 99999999888 89999999998765543
No 254
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=97.08 E-value=0.0074 Score=47.54 Aligned_cols=93 Identities=12% Similarity=0.049 Sum_probs=64.0
Q ss_pred CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954 169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI 244 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~ 244 (268)
...++|.|..+..+. +.......||++.+..+.......+|..+.-+.+|.|||.+.|++...++.. |.|+||+..
T Consensus 9 ~~~friki~~~~~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 9 DRKFRVKILGIDIPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCCEEEEEEeecccCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 456778888887432 2232345788887776444333446776676778999999999998888776 999999852
Q ss_pred CC-----------------CCeeeEEEEEeCCcc
Q psy3954 245 SG-----------------LNVFLGEVHIPLNNK 261 (268)
Q Consensus 245 ~~-----------------~~~~lG~~~l~l~~~ 261 (268)
.. .+..||.+.+.|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~ 122 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDH 122 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEcC
Confidence 21 256788888877554
No 255
>KOG1327|consensus
Probab=97.03 E-value=0.0024 Score=57.91 Aligned_cols=79 Identities=16% Similarity=0.325 Sum_probs=61.0
Q ss_pred EEEEcccCccc--cCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecC-----CCcEEEEEEEeCCC
Q psy3954 58 IRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPR-----RFRHLAVYAYDRDR 118 (268)
Q Consensus 58 V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~-----~~~~l~~~v~d~d~ 118 (268)
+...++|++|. +..+.+| |.. ..++|.++++++||.|-. |.+.+.. ....+.+.+||++
T Consensus 139 ~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~- 216 (529)
T KOG1327|consen 139 VQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYD- 216 (529)
T ss_pred eeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccC-
Confidence 33343677787 7788888 776 578999999999999975 3332211 1578999999999
Q ss_pred CCCCCceeEEEEEecccccc
Q psy3954 119 TSKTDRVLGKVTIQRSDLHR 138 (268)
Q Consensus 119 ~~~~d~~iG~~~i~l~~l~~ 138 (268)
..+++++||++..++.++..
T Consensus 217 ~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 217 SNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCCCcCceeEecccHHHhcc
Confidence 77888999999999998864
No 256
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.85 E-value=0.007 Score=46.82 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=56.6
Q ss_pred eEEEEEEEcccCccccCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954 54 GTLRIRIQYTADHILQPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD 117 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d 117 (268)
..++|+|+ +|++++ ....+| ||. ....|+.+.. .+|.|||-..|++.-. ...|.|.||+..
T Consensus 8 ~~~~v~i~-~~~~~~-~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~ 84 (158)
T cd08398 8 SNLRIKIL-CATYVN-VNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK 84 (158)
T ss_pred CCeEEEEE-eeccCC-CCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence 57899999 999998 123467 887 2224444443 6799999998875544 689999999976
Q ss_pred CCC---CCCceeEEEEEeccccc
Q psy3954 118 RTS---KTDRVLGKVTIQRSDLH 137 (268)
Q Consensus 118 ~~~---~~d~~iG~~~i~l~~l~ 137 (268)
... .....||.+.++|-+-.
T Consensus 85 ~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 85 GRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred cccCCCCceEEEEEEEEEEECCC
Confidence 211 12356999999877643
No 257
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.84 E-value=0.0046 Score=47.05 Aligned_cols=72 Identities=22% Similarity=0.138 Sum_probs=52.4
Q ss_pred CCEEEEEEEecCCcce--eeeceeccCC-CCCccceEEEEEccCCCCce---EEEEEEecCCC-CC----eeeEEEEEeC
Q psy3954 190 DPTAMVTVHYTHNKSD--VQKSKVKKKS-HSPVFNESFMFDRSLGDPIE---LVVSLHHDISG-LN----VFLGEVHIPL 258 (268)
Q Consensus 190 dpyv~v~l~~~~~~~~--~~kT~v~~~t-~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~~~-~~----~~lG~~~l~l 258 (268)
+.||.+.+..++.... ...|.....+ .++.|||.+.|++...++.. |.|+||..+.. .. ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 4578888886665332 3467766666 78999999999987666655 99999997766 44 7999999998
Q ss_pred Ccc
Q psy3954 259 NNK 261 (268)
Q Consensus 259 ~~~ 261 (268)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 765
No 258
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.74 E-value=0.0087 Score=47.11 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=55.8
Q ss_pred eEEEEEEEcccCccccCCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954 54 GTLRIRIQYTADHILQPHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD 117 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d 117 (268)
..++|+|+ .+.+|.-.....+ ||. ....|+.+.-+.+|.|||...|++.-. ...|.|.||+..
T Consensus 8 ~~f~i~i~-~~~~~~~~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 8 EKFSITLH-KISNLNAAERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCEEEEEE-EeccCccCCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 57899999 9999972123355 666 334565555567799999999985544 688999999976
Q ss_pred CCCC----------------CCceeEEEEEecccc
Q psy3954 118 RTSK----------------TDRVLGKVTIQRSDL 136 (268)
Q Consensus 118 ~~~~----------------~d~~iG~~~i~l~~l 136 (268)
... .+..||-+.++|-+-
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 87 -KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred -ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 221 235777777776653
No 259
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.65 E-value=0.015 Score=45.73 Aligned_cols=92 Identities=20% Similarity=0.063 Sum_probs=65.6
Q ss_pred CeEEEEEceecCCCCC--CCCCCCEEEEEEEecCCcc-eeeeceecc----CCCCCccceEEEEEccCCCCce---EEEE
Q psy3954 170 TSLMVNVNEASGLTQV--NGQCDPTAMVTVHYTHNKS-DVQKSKVKK----KSHSPVFNESFMFDRSLGDPIE---LVVS 239 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~--~g~~dpyv~v~l~~~~~~~-~~~kT~v~~----~t~nP~~ne~f~f~v~~~~~~~---l~i~ 239 (268)
..+.|.|..+.+++.. ....+-||.+.+..+++.. ....|+... -...+.|||.+.|++...++.. |.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4578889999999743 3357899999998665532 233443221 1235779999999987777765 9999
Q ss_pred EEecCCC----------CCeeeEEEEEeCCcc
Q psy3954 240 LHHDISG----------LNVFLGEVHIPLNNK 261 (268)
Q Consensus 240 V~d~~~~----------~~~~lG~~~l~l~~~ 261 (268)
||+.... ....||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9986543 247999999998665
No 260
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.58 E-value=0.011 Score=45.79 Aligned_cols=82 Identities=22% Similarity=0.148 Sum_probs=54.9
Q ss_pred eEEEEEEEcccCcccc-CCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeC
Q psy3954 54 GTLRIRIQYTADHILQ-PHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDR 116 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~~-~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~ 116 (268)
..++|+|. .+.+++. .....+ ||. ....|.......++.|||...|.+... ...|.|.||+.
T Consensus 8 ~~~~i~i~-~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIH-GITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEE-eeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 35677777 7776652 233344 655 222344343346899999999984443 68899999998
Q ss_pred CCCCC--CCceeEEEEEeccccc
Q psy3954 117 DRTSK--TDRVLGKVTIQRSDLH 137 (268)
Q Consensus 117 d~~~~--~d~~iG~~~i~l~~l~ 137 (268)
+ ..+ .+..||.+.++|=+-.
T Consensus 87 ~-~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 87 S-EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred e-cCCCCcceEEEEEeEEeEccc
Confidence 7 343 4679999999887643
No 261
>KOG1452|consensus
Probab=96.37 E-value=0.0075 Score=50.86 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCeEEEEEEEcccCccc---cCCC-CCC-ceE----EEeeecccCCCCCC--ccCcEEEEEecCCCcEEEEEEEeCCCC
Q psy3954 51 QDLGTLRIRIQYTADHIL---QPHY-YED-LCT----QILNSPSVNPVTSP--FFGEEFQFDIPRRFRHLAVYAYDRDRT 119 (268)
Q Consensus 51 ~~~~~L~V~v~~~a~~L~---~~~~-~~d-yv~----~~~~T~~~~~t~nP--~wne~f~f~v~~~~~~l~~~v~d~d~~ 119 (268)
...|.|.+++. .+++|. ...| .-+ ||+ ...++++.-.+..| .|.|.|..++... ..+.+-||.|+ .
T Consensus 48 s~tGiL~~H~~-~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~-p 124 (442)
T KOG1452|consen 48 SSTGILYFHAY-NGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWP-P 124 (442)
T ss_pred cccceEEEEEe-cccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecC-c
Confidence 44789999999 999998 2234 445 999 45555555556666 6999999987766 77888889888 3
Q ss_pred CCCCce
Q psy3954 120 SKTDRV 125 (268)
Q Consensus 120 ~~~d~~ 125 (268)
-.+..+
T Consensus 125 q~RHKL 130 (442)
T KOG1452|consen 125 QRRHKL 130 (442)
T ss_pred hhhccc
Confidence 333433
No 262
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.30 E-value=0.028 Score=43.06 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=68.7
Q ss_pred CeEEEEEceecCCCC----CCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCC------------C
Q psy3954 170 TSLMVNVNEASGLTQ----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD------------P 233 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~----~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~------------~ 233 (268)
..|++.|+.++.+.+ ..+..+..+.+++.-. .+.++|+.+..+.+|.|+|.|.|++..+. +
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~---~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR---GQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec---CceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 357788888887752 2255666777776533 57899999999999999999999987653 2
Q ss_pred ce-EEEEEEecCCC-CCeeeEEEEEeCCccCC
Q psy3954 234 IE-LVVSLHHDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 234 ~~-l~i~V~d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
+. |.+.|...|.. ...++|.-.+++.....
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~ 117 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC 117 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence 22 88888887776 66899999888876644
No 263
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.15 E-value=0.019 Score=44.55 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=42.3
Q ss_pred eecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCCCCCCCCceeEEEEEecccc
Q psy3954 82 NSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDL 136 (268)
Q Consensus 82 ~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l 136 (268)
+|+.+.-+..+.|||-..|.+.-. +..|.|.||+.+ ..++...+|.+.++|-+-
T Consensus 50 ~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~-~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 50 QTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS-GTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred EccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec-CCCCceEEEEEEEeeECC
Confidence 555555567789999988885554 689999999998 455677999999987754
No 264
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=96.15 E-value=0.061 Score=38.22 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=51.1
Q ss_pred EEEEEceecCCCC--CCCCCCCEEEEEEEecCCcc-eeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecC
Q psy3954 172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKS-DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDI 244 (268)
Q Consensus 172 L~v~v~~a~~L~~--~~g~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~ 244 (268)
+.+.+..+.+.+- ....++.||++.+..++... ....|..+.-...+.|||...|++...++.. |.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556666666542 22235899999988655422 2345666666667999999999988877776 999999864
No 265
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.01 E-value=0.056 Score=43.02 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=42.8
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCC---ceeEEEEEecc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTD---RVLGKVTIQRS 134 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d---~~iG~~~i~l~ 134 (268)
..++|.+...+.+|.|+|++.+.++.+ ...|.|++++....-.+| ..+|.+-+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 566788888899999999999999988 788999998865111222 46777777664
No 266
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.92 E-value=0.027 Score=44.81 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=35.7
Q ss_pred EeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCCCC--ceeEEEEEeccc
Q psy3954 80 ILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSKTD--RVLGKVTIQRSD 135 (268)
Q Consensus 80 ~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~~d--~~iG~~~i~l~~ 135 (268)
.+.|.+...+.+|.|+|+|.+.+|.. ...|.|++++....-+++ ..+|.+.+||-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45788888999999999999999887 688999999987222222 689999999886
No 267
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.75 E-value=0.045 Score=47.62 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=68.1
Q ss_pred EEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-------EEEEEEecC
Q psy3954 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-------LVVSLHHDI 244 (268)
Q Consensus 172 L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-------l~i~V~d~~ 244 (268)
+.+.|++|++++...+ ....+...+. .....|..+..+-.|.||-...+.+....+.. |++++|-.+
T Consensus 2 ivl~i~egr~F~~~~~-~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR-HPIVVEAKFN-----GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCCC-ccEEEEEEeC-----CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 5789999999986532 4667777776 66788999999999999999999886544332 999999887
Q ss_pred C-C-CCeeeEEEEEeCCcc
Q psy3954 245 S-G-LNVFLGEVHIPLNNK 261 (268)
Q Consensus 245 ~-~-~~~~lG~~~l~l~~~ 261 (268)
. . .++.||.+.++|.+.
T Consensus 76 ~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred CCCCcceeccEEEEEcccc
Confidence 3 3 899999999999998
No 268
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.54 E-value=0.054 Score=42.53 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=56.1
Q ss_pred CeEEEEEEEcccCccc--cCCCCCC-ceE-----------EEeeecccC----CCCCCccCcEEEEEecCC----CcEEE
Q psy3954 53 LGTLRIRIQYTADHIL--QPHYYED-LCT-----------QILNSPSVN----PVTSPFFGEEFQFDIPRR----FRHLA 110 (268)
Q Consensus 53 ~~~L~V~v~~~a~~L~--~~~~~~d-yv~-----------~~~~T~~~~----~t~nP~wne~f~f~v~~~----~~~l~ 110 (268)
...+.|+|. ++.+++ ......| |+. ....|+... -...+.|||...|.+.-. ...|.
T Consensus 7 ~~~~~i~v~-~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVS-SLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEE-EeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 456889999 999998 3334567 777 222343221 123567999999985443 68899
Q ss_pred EEEEeCCCCCC---------CCceeEEEEEecccc
Q psy3954 111 VYAYDRDRTSK---------TDRVLGKVTIQRSDL 136 (268)
Q Consensus 111 ~~v~d~d~~~~---------~d~~iG~~~i~l~~l 136 (268)
|.+|+.. ..+ .+..||-+.++|=+-
T Consensus 86 itl~~~~-~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTT-SSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEe-cCCccccccccccceEEEEEeEeeEcc
Confidence 9999977 333 356899999987764
No 269
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.15 E-value=0.057 Score=42.88 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=43.0
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCC-C-CceeEEEEEecc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK-T-DRVLGKVTIQRS 134 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~-~-d~~iG~~~i~l~ 134 (268)
..++|.+...+.+|.|+|++.+.++.+ ...|.|+.++.. ... . ...+|.+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S-~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS-TKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee-eccCCCCCceEEEEEeec
Confidence 356899999999999999999999988 688999998865 221 1 256787777764
No 270
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.05 E-value=0.083 Score=41.95 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=46.4
Q ss_pred ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC---CCeeeEEEEEeCCc
Q psy3954 204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG---LNVFLGEVHIPLNN 260 (268)
Q Consensus 204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~---~~~~lG~~~l~l~~ 260 (268)
...++|.+...+.+|.|+|++-..++.+..+. |.|++++.... ....+|-+.+||-.
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 44678999999999999999999999887777 99988885433 23789999999854
No 271
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.92 E-value=0.37 Score=36.32 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=64.2
Q ss_pred eEEEEEEEcccCccccCCCCCC-ceE-E-------EeeecccC-CCCCCccCcEEEEEecCC---------CcEEEEEEE
Q psy3954 54 GTLRIRIQYTADHILQPHYYED-LCT-Q-------ILNSPSVN-PVTSPFFGEEFQFDIPRR---------FRHLAVYAY 114 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-~-------~~~T~~~~-~t~nP~wne~f~f~v~~~---------~~~l~~~v~ 114 (268)
-.+.+.|+ +..++|. .... ||. . ...|.... .+-.-.|||+|.+.+... ...+.|.|+
T Consensus 7 f~~~l~i~-~l~~~p~--~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 7 FQFDLTIH-ELENLPS--SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEE-EeECcCC--CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 45678888 8888873 1222 555 1 12222222 122348999999973321 457999999
Q ss_pred eCCCCCCCCceeEEEEEeccccccc--cCccceecCcccCCCcccceEEEEEEEE
Q psy3954 115 DRDRTSKTDRVLGKVTIQRSDLHRI--SNKEHWFPLTPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 115 d~d~~~~~d~~iG~~~i~l~~l~~~--~~~~~w~~L~~~~~~~~~~G~i~v~l~~ 167 (268)
... ..++...+|.+.++|++.... .....-++|... ......|.+++.+
T Consensus 84 ~~~-~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~ 134 (143)
T PF10358_consen 84 EVD-GSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISL 134 (143)
T ss_pred Eec-CCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEE
Confidence 885 233336899999999999864 334455666554 1224556665543
No 272
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=94.89 E-value=0.26 Score=38.97 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=42.2
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCC-----CCCceeEEEEEeccc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTS-----KTDRVLGKVTIQRSD 135 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~-----~~d~~iG~~~i~l~~ 135 (268)
..++|-+..+ .+|.|+|+|.+.+|.. ...|.|++++.. .- .....+|.+.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~-~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVS-SKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccc-cccccCCCccceEEEEEEeccc
Confidence 4555555555 9999999999998877 688999999976 22 235678998888775
No 273
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=94.49 E-value=0.2 Score=39.47 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.3
Q ss_pred eecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954 82 NSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD 117 (268)
Q Consensus 82 ~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d 117 (268)
+|+...-+.+|.|||-..|++.-. ...|.|.||+..
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred eeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 566666667899999988885544 689999999975
No 274
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.35 E-value=0.17 Score=40.41 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=46.1
Q ss_pred ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC--CC---eeeEEEEEeCC
Q psy3954 204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG--LN---VFLGEVHIPLN 259 (268)
Q Consensus 204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~--~~---~~lG~~~l~l~ 259 (268)
...++|.+.....+|.|+|++-..++.+..+. |.|++++.... +| ..+|-+.+||-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 55688889888999999999999999887777 99999885433 23 57999999986
No 275
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.31 E-value=0.45 Score=32.90 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=49.6
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcccc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQ 158 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~ 158 (268)
...+|.-... .+..|++.|.+++... .+|.|.||=.| . ..+.|-..+.|++.. ...-.++. ++
T Consensus 21 ~VgqT~Wk~~-s~q~WDQ~Fti~LdRs-RELEI~VywrD-~---RslCav~~lrLEd~~----~~~~~~le-------pq 83 (98)
T cd08687 21 VVGQTQWKPK-SNQAWDQSFTLELERS-RELEIAVYWRD-W---RSLCAVKFLKLEDER----HEVQLDME-------PQ 83 (98)
T ss_pred EEeecccccc-ccccccceeEEEeecc-cEEEEEEEEec-c---hhhhhheeeEhhhhc----ccceeccc-------cc
Confidence 4566665543 5778999999999887 99999999888 3 236787888888732 12223333 36
Q ss_pred eEEEEEEEE
Q psy3954 159 GKIQIGVLS 167 (268)
Q Consensus 159 G~i~v~l~~ 167 (268)
|.+...+.|
T Consensus 84 g~l~~ev~f 92 (98)
T cd08687 84 LCLVAELTF 92 (98)
T ss_pred cEEEEEEEe
Confidence 777777665
No 276
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.23 E-value=0.15 Score=40.49 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=37.0
Q ss_pred ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC--C--CeeeEEEEEeCCc
Q psy3954 204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG--L--NVFLGEVHIPLNN 260 (268)
Q Consensus 204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~--~--~~~lG~~~l~l~~ 260 (268)
.....|.+...+.+|.|+|.|-..++...... |.|++++.... + ...+|-+.+||-.
T Consensus 58 ~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 58 VTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred ceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45678888888899999999999998776665 99999996543 2 2799999999987
No 277
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=94.03 E-value=0.19 Score=39.67 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=43.9
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCCC------CCceeEEEEEeccc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTSK------TDRVLGKVTIQRSD 135 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~~------~d~~iG~~~i~l~~ 135 (268)
..+.|.+...+.+|.|+|++.+.+|.. ...|.|+.++.+ .-. ....+|.+-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs-~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS-CQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEee-ccccccCCCccceEEEEEEeeec
Confidence 566788999999999999999998887 678999999965 221 13567888777653
No 278
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=93.94 E-value=0.28 Score=35.30 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=44.3
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC--------CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccC--ccceecC
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR--------FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN--KEHWFPL 148 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~--------~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~--~~~w~~L 148 (268)
+...|.++. ..+|.+|-+-.|.|... ...+.++++..- . ..-..+|.+.+++..+....+ ...-..|
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g-~d~~tla~~~i~l~~ll~~~~~~i~~~~~l 87 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-G-SDFETLAAGQISLRPLLESNGERIHGSATL 87 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--S-S-EEEEEEEEE--SHHHH--S--EEEEEEE
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-c-CCeEEEEEEEeechhhhcCCCceEEEEEEE
Confidence 566777777 78999999999988776 578999999876 2 346789999999998874333 2233334
Q ss_pred cccCCCcccceEEEEEEEE
Q psy3954 149 TPVTQDSEVQGKIQIGVLS 167 (268)
Q Consensus 149 ~~~~~~~~~~G~i~v~l~~ 167 (268)
... ..+.-|.|...++.
T Consensus 88 ~g~--~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 88 VGV--SGEDFGTLEYWIRL 104 (107)
T ss_dssp -BS--SS-TSEEEEEEEEE
T ss_pred ecc--CCCeEEEEEEEEEe
Confidence 332 23367888776653
No 279
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=93.65 E-value=0.29 Score=38.84 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=44.1
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC---CcEEEEEEEeCCCCC---------CCCceeEEEEEeccc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR---FRHLAVYAYDRDRTS---------KTDRVLGKVTIQRSD 135 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~l~~~v~d~d~~~---------~~d~~iG~~~i~l~~ 135 (268)
..+.|.+...+.+|.|+|++.+.+|.. ...|.|+.++.+ .- +.+..+|.+-+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs-c~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS-CDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec-cccccccccCCCccceEEEEEEeeec
Confidence 566788888999999999999998887 678999999975 11 123567888887764
No 280
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.43 E-value=0.19 Score=38.09 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=41.1
Q ss_pred EeeecccCCC-CCCccCcEEEEEecCC----CcEEEEEEEeCCCCCCCC----ceeEEEEEeccccc
Q psy3954 80 ILNSPSVNPV-TSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTD----RVLGKVTIQRSDLH 137 (268)
Q Consensus 80 ~~~T~~~~~t-~nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~~d----~~iG~~~i~l~~l~ 137 (268)
..+|+.+.-+ .+|.|||...|.+.-. ...|.|.||+.+ ....+ ..||-+.++|=+..
T Consensus 21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~-~~~~~~~~~~~lgw~n~~lFd~~ 86 (142)
T PF00792_consen 21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVD-SKKKSKKKKVPLGWVNLPLFDYR 86 (142)
T ss_dssp EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEE-CSTTT--EEEEEEEEEEESB-TT
T ss_pred eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEec-CCCccccceeEEEEEEEEeECCC
Confidence 3366666655 7999999999985443 689999999988 44444 68999999887653
No 281
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.16 E-value=0.5 Score=35.59 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=54.7
Q ss_pred eEEEEEceecCCCCCCCCCCCEEEEEEEecCCcceeeeceec-cCCCCCccceEEEEEccC------CCCce--EEEEEE
Q psy3954 171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVK-KKSHSPVFNESFMFDRSL------GDPIE--LVVSLH 241 (268)
Q Consensus 171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~~ne~f~f~v~~------~~~~~--l~i~V~ 241 (268)
.+.+.|.+..+++. .....+|+.... ........|... -....-.|||.|.+.+.. ..++. +.|.|+
T Consensus 8 ~~~l~i~~l~~~p~--~~~~v~v~wkr~--~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPS--SNGKVFVKWKRG--DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCC--CCCEEEEEEEEC--CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 46678888888876 223344444333 222112233322 234557899999998653 11344 999999
Q ss_pred ecCCC-CCeeeEEEEEeCCccCC
Q psy3954 242 HDISG-LNVFLGEVHIPLNNKET 263 (268)
Q Consensus 242 d~~~~-~~~~lG~~~l~l~~~~~ 263 (268)
..... +...+|.+.|.|.+...
T Consensus 84 ~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EecCCCccceEEEEEEEHHHhhC
Confidence 87433 33699999999988765
No 282
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=92.83 E-value=0.44 Score=33.74 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=39.4
Q ss_pred EEEEEEcccCccc-c-CCCCCC-ceE-----------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEeCC
Q psy3954 56 LRIRIQYTADHIL-Q-PHYYED-LCT-----------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRD 117 (268)
Q Consensus 56 L~V~v~~~a~~L~-~-~~~~~d-yv~-----------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d~d 117 (268)
+.+.+. .+++.+ . ....++ ||. ....|+.+.-...+.|||...|++.-. ...|.|.+|+..
T Consensus 13 ~~~~~~-~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIA-LIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEE-EeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 445555 555655 2 222246 666 233565555556689999998875544 688999999865
No 283
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=92.34 E-value=1.1 Score=35.62 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=45.4
Q ss_pred ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC----------CCeeeEEEEEeCCc
Q psy3954 204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG----------LNVFLGEVHIPLNN 260 (268)
Q Consensus 204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~----------~~~~lG~~~l~l~~ 260 (268)
.....|.+...+.+|.|+|.+-..++....+. |.|+.++.... ....+|-+.+||-.
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45678889989999999999999988766555 99999986421 23679999999865
No 284
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=91.10 E-value=1.7 Score=34.34 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=45.0
Q ss_pred ceeeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC-------CCeeeEEEEEeCCc
Q psy3954 204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG-------LNVFLGEVHIPLNN 260 (268)
Q Consensus 204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~-------~~~~lG~~~l~l~~ 260 (268)
.....|.+...+.+|.|+|.+-..++....+. |.|+.++.+.. ....+|-+.+||-.
T Consensus 53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 45688899999999999999999998766555 99999984432 23679999888754
No 285
>KOG4269|consensus
Probab=90.67 E-value=0.13 Score=49.26 Aligned_cols=91 Identities=10% Similarity=0.126 Sum_probs=68.4
Q ss_pred eeeccccccceEEEeeeeeeccCcccccccccccCCCeEEEEEEEcccCccccCCCCCC-ceE----------EEeeecc
Q psy3954 17 KLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYED-LCT----------QILNSPS 85 (268)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~~y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~----------~~~~T~~ 85 (268)
.+|+...+.++...|.. ....+.++.......|.+.+.+. +|..|. .... ||. .+.+|++
T Consensus 727 LQ~lSns~~plqt~s~i-----~~t~NddD~eSpl~ygflh~~vh-sat~lk---qs~~lY~Td~v~e~~~~~s~~st~~ 797 (1112)
T KOG4269|consen 727 LQMLSNSCVPLQTVSNI-----PATYNDDDDESPLLYGFLHVIVH-SATGLK---QSRNLYCTDEVDEFGYFVSKASTRV 797 (1112)
T ss_pred HHHHhcCCccccccccc-----ccccccccccCcccccceeeeec-cccccc---cccceeeehhhhhhcccccccccee
Confidence 46777777777777655 33455666666777899999999 999987 2234 777 6889999
Q ss_pred cCCCCCCccCcEEEEEecCCCcEEEEEEEeCC
Q psy3954 86 VNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRD 117 (268)
Q Consensus 86 ~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d 117 (268)
+.+|..|.||++|+..+-.. +.+++..++.+
T Consensus 798 iadT~~~~~npe~hv~~~~s-qS~r~~~~ek~ 828 (1112)
T KOG4269|consen 798 IADTAEPQWNPEKHVPVIES-QSSRLEKTEKS 828 (1112)
T ss_pred eecccCCCCChhcccchhhc-cccchhhhccc
Confidence 99999999999999776554 66666666654
No 286
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=90.53 E-value=0.84 Score=36.01 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=40.9
Q ss_pred eeeceeccCCCCCccceEEEEEccCCCCce--EEEEEEecCCC------CCeeeEEEEEeCCc
Q psy3954 206 VQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHDISG------LNVFLGEVHIPLNN 260 (268)
Q Consensus 206 ~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~--l~i~V~d~~~~------~~~~lG~~~l~l~~ 260 (268)
.++|-+..+ .+|.|+|.|-..++...... |.|++++.... ....+|-+.+||-.
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 89999999999997765444 99999996532 46899999999987
No 287
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=85.22 E-value=2.7 Score=31.95 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=50.7
Q ss_pred eEEEEEceecCCCCCCCCCCCEEEEEEEecCCc--ceeeeceecc--CCCCCccceEEEEEccCCCCce---EEEEEEec
Q psy3954 171 SLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNK--SDVQKSKVKK--KSHSPVFNESFMFDRSLGDPIE---LVVSLHHD 243 (268)
Q Consensus 171 ~L~v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~--~~~~kT~v~~--~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~ 243 (268)
.|.|.|-+.. |.+.....|||+.|++....+. ...+.|.+.. ...--.||.....+.+.+.+.. +.|++.++
T Consensus 14 ~l~v~Iekig-lkda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~ 92 (147)
T PF14186_consen 14 YLSVFIEKIG-LKDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHY 92 (147)
T ss_dssp EEEEEEEEEE--TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEE
T ss_pred eEEEEEEEEE-ECChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEee
Confidence 3455555554 7676667899999999854442 3456676652 2222346766666655555544 89999997
Q ss_pred CCC--CCeeeEEEEEeCCccCCC
Q psy3954 244 ISG--LNVFLGEVHIPLNNKETS 264 (268)
Q Consensus 244 ~~~--~~~~lG~~~l~l~~~~~~ 264 (268)
... +-...+-+.++++++..|
T Consensus 93 K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 93 KPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp ETTTTCEEEEEEEEEEGGG--SE
T ss_pred eccceeeeeeEEEEEEhhhccCC
Confidence 665 344566777788777553
No 288
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=84.50 E-value=8.1 Score=30.11 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=37.7
Q ss_pred EeeecccCCCC-----CCccCcEEEEEecCC----CcEEEEEEEeCCCCCCCCceeEEEEEec
Q psy3954 80 ILNSPSVNPVT-----SPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTDRVLGKVTIQR 133 (268)
Q Consensus 80 ~~~T~~~~~t~-----nP~wne~f~f~v~~~----~~~l~~~v~d~d~~~~~d~~iG~~~i~l 133 (268)
..+|.+...+. .-.||..|.+.+... -..|.|+||..| ..+++.+.|...+.+
T Consensus 40 ~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D-~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 40 EGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLD-SWGRDRVEGYGFCHL 101 (168)
T ss_pred eEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEc-ccCCeEEeEEeEEEe
Confidence 45666654332 346998877774433 468999999999 899999998765544
No 289
>KOG0694|consensus
Probab=83.82 E-value=0.45 Score=44.72 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=54.9
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEecccccc-ccCccceecCcccCCCccc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR-ISNKEHWFPLTPVTQDSEV 157 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~ 157 (268)
+...+.+.+.+..|.|+|+|..++... ..+.+.|++.. ....+.+...+.+..+++.. ....+.|..+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~F~~~v~~~-~~~~i~v~~~~-~~~~~~~~a~~~~~~e~~k~~~~~~~~w~~~~~------- 110 (694)
T KOG0694|consen 40 QGAENMTKVELRIPELRETFHVEVVAG-GAKNIIVLLKS-PDPKALSEAQLSLQEESQKLLALEQRLWVLIEE------- 110 (694)
T ss_pred ecccccCCCCCCCchhhhheeeeeecC-CceEEEEEecC-CcchhhHHHhHHHHHHHHHHHhhhhhhcccccc-------
Confidence 444667788899999999999996655 88888898876 45555555555554444432 223556877654
Q ss_pred ceEEEEEEEEc
Q psy3954 158 QGKIQIGVLST 168 (268)
Q Consensus 158 ~G~i~v~l~~~ 168 (268)
.|++...+.+.
T Consensus 111 ~g~~~~~~~~~ 121 (694)
T KOG0694|consen 111 LGTLLKPAALT 121 (694)
T ss_pred ccceeeeeccc
Confidence 47777766654
No 290
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=82.90 E-value=9.5 Score=29.76 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCCEEEEEEEecCCcceeeeceeccC--CCCCccceEEEEEccCCCCce-EEEEEEecCCCCCeeeEEEEEeCCccCC
Q psy3954 189 CDPTAMVTVHYTHNKSDVQKSKVKKK--SHSPVFNESFMFDRSLGDPIE-LVVSLHHDISGLNVFLGEVHIPLNNKET 263 (268)
Q Consensus 189 ~dpyv~v~l~~~~~~~~~~kT~v~~~--t~nP~~ne~f~f~v~~~~~~~-l~i~V~d~~~~~~~~lG~~~l~l~~~~~ 263 (268)
..-|+++.+. ...+.+|+...- ...-.|||.|.+.+.. ..+ |.+.||......+..|+++.+|+-....
T Consensus 37 ~~~~ikl~~N----~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 37 TRYYIKLFFN----DKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred eeEEEEEEEC----CEEEEeeeeEecCCCeEEeccCEEEEEEec--CCCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 4567777776 144556665542 2234478998888743 444 9999999876689999999999766543
No 291
>KOG0904|consensus
Probab=81.90 E-value=3.2 Score=40.38 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=51.0
Q ss_pred CCeEEEEEceecCCC-CCCCCCCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEec
Q psy3954 169 PTSLMVNVNEASGLT-QVNGQCDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHD 243 (268)
Q Consensus 169 ~~~L~v~v~~a~~L~-~~~g~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~ 243 (268)
...+.|.++.+.++. +....-..+|++.+..|... .+...|+.+..+.+|.||+.+.|++...++.. |.|.||--
T Consensus 342 ~~~frI~l~~is~~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYAV 421 (1076)
T ss_pred CCceEEEEeeccccCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeEe
Confidence 677888888888764 22222334555555544433 33466777777889999999999998877776 77777653
No 292
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=77.29 E-value=3.4 Score=36.96 Aligned_cols=43 Identities=35% Similarity=0.528 Sum_probs=33.5
Q ss_pred eeEEEEEeccc-cccccCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 125 VLGKVTIQRSD-LHRISNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 125 ~iG~~~i~l~~-l~~~~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
.+|.+.||+.. +..+...+.|+++..........|.+ +.+.|.
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~ 44 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVGEGLI-IKVSSE 44 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcCcceE-EEEEee
Confidence 48999999999 55667889999998766555556777 777776
No 293
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=75.89 E-value=8.8 Score=29.95 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=42.4
Q ss_pred EEeeecccCC--CCCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccc
Q psy3954 79 QILNSPSVNP--VTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLH 137 (268)
Q Consensus 79 ~~~~T~~~~~--t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~ 137 (268)
++.+|+...= ...-.|||.|.+.+..--..|.++||... . ..+..|+++.+|+-...
T Consensus 49 ~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~-~-~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 49 EVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKS-G-LSDRLLAEVFVPVPGST 107 (168)
T ss_pred EEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEcc-C-ccceEEEEEEeeCCCCc
Confidence 4455554432 12235799999998777899999999999 5 67889999999976554
No 294
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=74.10 E-value=39 Score=26.24 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=52.6
Q ss_pred EEEceecCCCCCCCCCCCEEEEEEEecCCc-----ce-eeeceeccC-----CCCCccceEEEEEccCCCCce---EEEE
Q psy3954 174 VNVNEASGLTQVNGQCDPTAMVTVHYTHNK-----SD-VQKSKVKKK-----SHSPVFNESFMFDRSLGDPIE---LVVS 239 (268)
Q Consensus 174 v~v~~a~~L~~~~g~~dpyv~v~l~~~~~~-----~~-~~kT~v~~~-----t~nP~~ne~f~f~v~~~~~~~---l~i~ 239 (268)
=.|..|.+.. ..+.||+..+..++.- .. ...|.+.+. ...-.||..|.+.+....... |.|+
T Consensus 6 G~I~~a~~f~----~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~ 81 (168)
T PF07162_consen 6 GEIESAEGFE----EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQ 81 (168)
T ss_pred EEEEEEECCC----CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEE
Confidence 3566666543 3467888888755541 12 345554432 334679988888776555533 9999
Q ss_pred EEecCCC-CCeeeEEEEEeC
Q psy3954 240 LHHDISG-LNVFLGEVHIPL 258 (268)
Q Consensus 240 V~d~~~~-~~~~lG~~~l~l 258 (268)
||..|.. ++.+.|-..+.+
T Consensus 82 V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 82 VYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEcccCCeEEeEEeEEEe
Confidence 9999988 888887655544
No 295
>KOG1452|consensus
Probab=73.56 E-value=15 Score=31.64 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=48.7
Q ss_pred EEEEEcCCeEEEEEceecCCCC---CCCC-CCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEE
Q psy3954 163 IGVLSTPTSLMVNVNEASGLTQ---VNGQ-CDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVV 238 (268)
Q Consensus 163 v~l~~~~~~L~v~v~~a~~L~~---~~g~-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i 238 (268)
+++.-..|.|.++++.+|+|.- ..|. .+-|+.+... +..+.+|.+.....--.|.|.|..++-. ...+.+
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d----rqh~aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~ 117 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD----RQHPARTRVRSSGPGFAWAEDFKHDVVN--IEVLHY 117 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeec----ccCccccccccCCCCccchhhceeeccc--ceeeeE
Confidence 3444448999999999999962 2333 5777777654 3344555555444444567887776432 223777
Q ss_pred EEEecCCC
Q psy3954 239 SLHHDISG 246 (268)
Q Consensus 239 ~V~d~~~~ 246 (268)
-||.|+.-
T Consensus 118 lvySW~pq 125 (442)
T KOG1452|consen 118 LVYSWPPQ 125 (442)
T ss_pred EEeecCch
Confidence 77777655
No 296
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=70.57 E-value=26 Score=24.40 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=32.2
Q ss_pred CCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecCC
Q psy3954 189 CDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDIS 245 (268)
Q Consensus 189 ~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~~ 245 (268)
++..+.+.+. ...+.+|.-+.. .+..|++.|.+.+. .-.+|.|.||-.|.
T Consensus 9 ~eV~avLklD----n~~VgqT~Wk~~-s~q~WDQ~Fti~Ld--RsRELEI~VywrD~ 58 (98)
T cd08687 9 SEVSAVLKLD----NTVVGQTQWKPK-SNQAWDQSFTLELE--RSRELEIAVYWRDW 58 (98)
T ss_pred cceEEEEEEc----CeEEeecccccc-ccccccceeEEEee--cccEEEEEEEEecc
Confidence 3555666654 234566665543 57889999999763 22349999987653
No 297
>KOG1329|consensus
Probab=70.47 E-value=5.5 Score=38.86 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=63.9
Q ss_pred CC-ceE------EEeeecccCCC-CCCccCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccce
Q psy3954 74 ED-LCT------QILNSPSVNPV-TSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHW 145 (268)
Q Consensus 74 ~d-yv~------~~~~T~~~~~t-~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w 145 (268)
.+ |+. ...+|....+. .+|.|.+.|..........+.+.+-+.+ ..+-...+|.+.++...+..+.....|
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~-~~G~s~~w~~v~~s~~~~~~~~~~~~~ 216 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGAR-VPGWSKRWGRVKISFLQYCSGHRIGGW 216 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCc-cccceeEEEEeccchhhhhccccccce
Confidence 46 877 45677777776 7899999998777777889999999988 666577999999999999887888889
Q ss_pred ecCcccCC
Q psy3954 146 FPLTPVTQ 153 (268)
Q Consensus 146 ~~L~~~~~ 153 (268)
+++-..+.
T Consensus 217 ~~Il~~d~ 224 (887)
T KOG1329|consen 217 FPILDNDG 224 (887)
T ss_pred eeeeccCC
Confidence 88765443
No 298
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=70.07 E-value=5.5 Score=28.60 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=32.8
Q ss_pred ceeeeceeccCCCCCccceEEEEEccCCCC-----ce--EEEEEEecCCCCCeeeEEEEEeCCccC
Q psy3954 204 SDVQKSKVKKKSHSPVFNESFMFDRSLGDP-----IE--LVVSLHHDISGLNVFLGEVHIPLNNKE 262 (268)
Q Consensus 204 ~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~-----~~--l~i~V~d~~~~~~~~lG~~~l~l~~~~ 262 (268)
-..+.|.++. ..+|.||-+-.|.|..+++ +. +.++++..-......+|.+.+++..+.
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLL 74 (107)
T ss_dssp ---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHH
T ss_pred eeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhh
Confidence 3456777777 6899999999998876543 22 999999975337899999999988764
No 299
>KOG0906|consensus
Probab=66.76 E-value=7.7 Score=36.64 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=49.3
Q ss_pred CCCEEEEEEEecCCc-ceeeeceeccCCCCCccceEEEEEccCCCCce---EEEEEEecCCC-CCeeeEEEEEeCCcc
Q psy3954 189 CDPTAMVTVHYTHNK-SDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVSLHHDISG-LNVFLGEVHIPLNNK 261 (268)
Q Consensus 189 ~dpyv~v~l~~~~~~-~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~---l~i~V~d~~~~-~~~~lG~~~l~l~~~ 261 (268)
+|.|++..+...+.. ..--+|+.+.-...-.|||-..+++.-.++.. +.|++||.+.. ...++|...+.+...
T Consensus 47 ~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k 124 (843)
T KOG0906|consen 47 SDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGK 124 (843)
T ss_pred hhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecc
Confidence 566666665533321 22234444433333459999999988777765 99999997666 888999988877654
No 300
>KOG2419|consensus
Probab=65.86 E-value=0.58 Score=43.59 Aligned_cols=137 Identities=13% Similarity=0.096 Sum_probs=72.7
Q ss_pred EEeeecccCCCCCCccCcEEEEEecCC--CcEEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccCCCcc
Q psy3954 79 QILNSPSVNPVTSPFFGEEFQFDIPRR--FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSE 156 (268)
Q Consensus 79 ~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~ 156 (268)
+.+||+....+.+|+|||. .+++..- ...|...|.+++ .+..++-++...+ ++.....+...|..
T Consensus 316 ~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~-~~~lndS~A~f~v-------q~~~sn~~~~~pE~---- 382 (975)
T KOG2419|consen 316 QTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYC-ELDLNDSYANFVV-------QRAKSNFFISEPES---- 382 (975)
T ss_pred hhhhhhhhccccccccccc-ccccccchhhHHHhhhccccc-cccccchhhhhhh-------hhhhccccccCccc----
Confidence 7899999999999999997 5554443 445666666665 4444443332111 11111111111111
Q ss_pred cceEEEEEEEEcCCeEEEEEceecCCC-------CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEcc
Q psy3954 157 VQGKIQIGVLSTPTSLMVNVNEASGLT-------QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229 (268)
Q Consensus 157 ~~G~i~v~l~~~~~~L~v~v~~a~~L~-------~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~ 229 (268)
..+.. .+..-...+|+ ...-..||++.+.++ ....++.+.....+|.+++.-.+.+.
T Consensus 383 ~~~sf-----------nl~~~a~sn~~a~r~~~S~T~~em~~~~~~~vG-----~~~~s~sie~~v~~~~c~~~~~~s~~ 446 (975)
T KOG2419|consen 383 TCKSF-----------NLLDPASSNLPALRNRLSKTNYEMDPFIVIVVG-----SRFFSCSIEDPVETEECFAKRILSIV 446 (975)
T ss_pred cceEE-----------EeecCCcccchhhhhccCccccccCchhHhhhh-----hHHhhhhhhccccchhhhhhhccccc
Confidence 01111 12222223433 122337899888876 44566777777778887765555444
Q ss_pred CCCCce-EEEEEEecC
Q psy3954 230 LGDPIE-LVVSLHHDI 244 (268)
Q Consensus 230 ~~~~~~-l~i~V~d~~ 244 (268)
..+.+. +.|.+++..
T Consensus 447 d~~~~fk~sf~~~~~l 462 (975)
T KOG2419|consen 447 DYEEDFKLSFSEFSDL 462 (975)
T ss_pred ccccCceEeeehHHHH
Confidence 444443 666665543
No 301
>KOG4027|consensus
Probab=65.62 E-value=25 Score=27.04 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCC-ccCcEEEEEecCC----CcEEEEEEEeCCCCCCCCceeEEEEEecc
Q psy3954 89 VTSP-FFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTDRVLGKVTIQRS 134 (268)
Q Consensus 89 t~nP-~wne~f~f~v~~~----~~~l~~~v~d~d~~~~~d~~iG~~~i~l~ 134 (268)
-.|| +||-.++..+... -..|.+.||..| .+++|.+.|...+++-
T Consensus 60 ~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d-~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 60 ADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKD-HSGKDCVTGYGMLHIP 109 (187)
T ss_pred CCCceEEecceEEEeccCCCCCCceEEEEEecCC-cCCcceeeeeeeEecC
Confidence 3445 5675555443333 457999999999 7999999998777544
No 302
>KOG4027|consensus
Probab=60.12 E-value=65 Score=24.85 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=40.1
Q ss_pred CCCEEEEEEEecCCc--------ceeeeceeccCCCCCc-cceEEEEEccC---CCCceEEEEEEecCCC-CCeeeEEEE
Q psy3954 189 CDPTAMVTVHYTHNK--------SDVQKSKVKKKSHSPV-FNESFMFDRSL---GDPIELVVSLHHDISG-LNVFLGEVH 255 (268)
Q Consensus 189 ~dpyv~v~l~~~~~~--------~~~~kT~v~~~t~nP~-~ne~f~f~v~~---~~~~~l~i~V~d~~~~-~~~~lG~~~ 255 (268)
+|.|++..+..++.. ...+-+...++-.+|. ||=.++..+.. ..-..|.++|+..|.+ +|.+.|-..
T Consensus 26 ~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~ 105 (187)
T KOG4027|consen 26 SDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGM 105 (187)
T ss_pred CceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeee
Confidence 688999888755541 1112222222333333 34322222211 1122399999999888 888998877
Q ss_pred EeCCc
Q psy3954 256 IPLNN 260 (268)
Q Consensus 256 l~l~~ 260 (268)
+++--
T Consensus 106 ~hiP~ 110 (187)
T KOG4027|consen 106 LHIPT 110 (187)
T ss_pred EecCc
Confidence 76643
No 303
>KOG0904|consensus
Probab=53.04 E-value=24 Score=34.67 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=40.6
Q ss_pred eEEEEEEEcccCccccCCCCCC-ceE-------------EEeeecccCCCCCCccCcEEEEEecCC----CcEEEEEEEe
Q psy3954 54 GTLRIRIQYTADHILQPHYYED-LCT-------------QILNSPSVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYD 115 (268)
Q Consensus 54 ~~L~V~v~~~a~~L~~~~~~~d-yv~-------------~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~l~~~v~d 115 (268)
.-++|+++ ++.++. .....| +|. ...+|.-+....+|.||+...|++.-. ...|.|.||.
T Consensus 343 ~~frI~l~-~is~~n-~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 343 RPFRIKLV-GISKVN-LPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CceEEEEe-eccccC-CCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 45788888 877665 223344 443 335566666688999999988885433 4667777776
Q ss_pred C
Q psy3954 116 R 116 (268)
Q Consensus 116 ~ 116 (268)
-
T Consensus 421 v 421 (1076)
T KOG0904|consen 421 V 421 (1076)
T ss_pred e
Confidence 4
No 304
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=50.57 E-value=98 Score=22.70 Aligned_cols=84 Identities=11% Similarity=0.153 Sum_probs=44.4
Q ss_pred eEEEEEceecCCC--CCCCCCCCEEEEEEEecCCcceeeeceeccCCCCCcc-ceEEEEEccCC-CC-ceEEEEEEecCC
Q psy3954 171 SLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVF-NESFMFDRSLG-DP-IELVVSLHHDIS 245 (268)
Q Consensus 171 ~L~v~v~~a~~L~--~~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~-ne~f~f~v~~~-~~-~~l~i~V~d~~~ 245 (268)
.|.+.=+.-...| +..+.+.||++|+-. . .....+...... .... ...+.+.+... .+ .++.|.+|+...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~--~--~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~ 79 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNG--G--KKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRS 79 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEET--T--EEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECET
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECC--C--ccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCC
Confidence 3455555556666 456779999999864 1 112222222111 1111 12233333211 22 239999999874
Q ss_pred C--CCeeeEEEEEeCC
Q psy3954 246 G--LNVFLGEVHIPLN 259 (268)
Q Consensus 246 ~--~~~~lG~~~l~l~ 259 (268)
. .++.+.++.+.-.
T Consensus 80 ~~~~~~~~f~~~FnT~ 95 (134)
T PF10409_consen 80 SSMSKEKMFRFWFNTG 95 (134)
T ss_dssp TECCCEEEEEEEEEGG
T ss_pred cccccCeEEEEEEeee
Confidence 2 7788888877543
No 305
>KOG3508|consensus
Probab=41.62 E-value=12 Score=36.88 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=67.5
Q ss_pred eccCcccccccccccCCCeEEEEEEEcccCccccCCCCCC-ceE----EEeeecccCCCCCCccCcEEEEEecCC-Cc--
Q psy3954 36 YYLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYED-LCT----QILNSPSVNPVTSPFFGEEFQFDIPRR-FR-- 107 (268)
Q Consensus 36 y~~~p~~~~~~~~~~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~----~~~~T~~~~~t~nP~wne~f~f~v~~~-~~-- 107 (268)
|...++.....+...++...+..-|. +|..|| .++..+ +.. -.+||....++.|-.|.|.|.|.+-+. ..
T Consensus 84 ~~~~lrr~i~e~r~r~~e~s~~~wi~-e~~~lp-~~~~l~~~~~~d~~l~~r~~s~~~~s~vl~gE~~~f~~lPpl~~~~ 161 (932)
T KOG3508|consen 84 YMENLRRTIAESRLRRAENSGSYWIR-EAKRLP-GKGKLSCLLQLDGTLYARTISKCGTSNVLWGENFLFPVLPPLPVVD 161 (932)
T ss_pred hhcchhhhcccchhhccCCceeEEee-ccCcCC-CcceeehhhccchhHHhhhhhhcccchhccccccccccCCccchhh
Confidence 33444444444445666777888888 999998 222233 222 334555555688899999999984333 22
Q ss_pred -EEEEEEEeCCCCCCCCceeEEEEEeccccccccCccceecCcccC
Q psy3954 108 -HLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVT 152 (268)
Q Consensus 108 -~l~~~v~d~d~~~~~d~~iG~~~i~l~~l~~~~~~~~w~~L~~~~ 152 (268)
...+.+--+. ....++.||-+. +...+...+..+.|+.+....
T Consensus 162 ~~~~~~i~~~~-k~~~n~~l~~~~-~~~f~~~~~~~d~w~~v~t~~ 205 (932)
T KOG3508|consen 162 VLRVRAILPKK-KKPTNDEIGFVK-GDEFPVHRDLEDGWYWVTTSR 205 (932)
T ss_pred hhhhhhhhhhh-ccCccccccccc-chhheecccccceeEEeeccc
Confidence 2333333333 334556899888 544454455678898886443
No 306
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=34.04 E-value=2.1e+02 Score=21.80 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=44.3
Q ss_pred cCCCeEEEEEEEcccCccccCCCCCC-ceE------------EEeeecccCCC--CCCccCcEEEEEecCC----CcEEE
Q psy3954 50 IQDLGTLRIRIQYTADHILQPHYYED-LCT------------QILNSPSVNPV--TSPFFGEEFQFDIPRR----FRHLA 110 (268)
Q Consensus 50 ~~~~~~L~V~v~~~a~~L~~~~~~~d-yv~------------~~~~T~~~~~t--~nP~wne~f~f~v~~~----~~~l~ 110 (268)
.++...|.|.|. +. +|.|.....| |+. ..+.|.+.... .-=.||...++..+.+ +..+.
T Consensus 9 ~~g~t~l~v~Ie-ki-glkda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~ 86 (147)
T PF14186_consen 9 EPGMTYLSVFIE-KI-GLKDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIF 86 (147)
T ss_dssp -TT--EEEEEEE-EE-E-TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEE
T ss_pred CCCCceEEEEEE-EE-EECChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEE
Confidence 344566777777 54 4777666777 655 45556665322 2224665555553333 67899
Q ss_pred EEEEeCCCCCCCCceeEEEEEeccccccc
Q psy3954 111 VYAYDRDRTSKTDRVLGKVTIQRSDLHRI 139 (268)
Q Consensus 111 ~~v~d~d~~~~~d~~iG~~~i~l~~l~~~ 139 (268)
|++.|+...-.+-...+=+.++++++..+
T Consensus 87 fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 87 FEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 99999873233333456677788777654
No 307
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=31.30 E-value=1e+02 Score=20.49 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=19.4
Q ss_pred CceEEEEEEecCCC-CCeeeEEEEEe
Q psy3954 233 PIELVVSLHHDISG-LNVFLGEVHIP 257 (268)
Q Consensus 233 ~~~l~i~V~d~~~~-~~~~lG~~~l~ 257 (268)
.....|++|+.+.. .|++|+...-+
T Consensus 11 ~~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 11 AKNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCCEEEEEECCCCCCCceeEEEEEC
Confidence 34488999999986 89999876553
No 308
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=28.29 E-value=38 Score=23.84 Aligned_cols=29 Identities=10% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCCccCcEEEEEecCC------CcEEEEEEEeCC
Q psy3954 89 VTSPFFGEEFQFDIPRR------FRHLAVYAYDRD 117 (268)
Q Consensus 89 t~nP~wne~f~f~v~~~------~~~l~~~v~d~d 117 (268)
..=+.|.|+|.+.++.+ ...|.+.+||-.
T Consensus 49 ~~Wv~W~~~~~i~vt~e~l~kl~~h~i~~kiwDtk 83 (99)
T PF15084_consen 49 QVWVSWTHTFNINVTKELLKKLYFHKITLKIWDTK 83 (99)
T ss_pred EEEEEEEEEEEeccCHHHHHHHHcCeEEEEEEcch
Confidence 34478999999998887 688999999864
No 309
>KOG3543|consensus
Probab=24.32 E-value=5.2e+02 Score=24.98 Aligned_cols=89 Identities=17% Similarity=0.350 Sum_probs=56.4
Q ss_pred EEEEEEEcccCccccCCCCCC--ceE-----EEeeecccCCCCCCccCcEEEEEecCCCcEEEEEEEeCCCCC---CCCc
Q psy3954 55 TLRIRIQYTADHILQPHYYED--LCT-----QILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTS---KTDR 124 (268)
Q Consensus 55 ~L~V~v~~~a~~L~~~~~~~d--yv~-----~~~~T~~~~~t~nP~wne~f~f~v~~~~~~l~~~v~d~d~~~---~~d~ 124 (268)
.+.|.|. +..+|. +...+- ||+ ++.+|.-.. ..-|.|+-.-.|.....-..+++.+|... .. -.|.
T Consensus 342 smevvvm-evqglk-svapnrivyctmevegeklqtdqae-askp~wgtqgdfstthplpvvkvklftes-tgvlaledk 417 (1218)
T KOG3543|consen 342 SMEVVVM-EVQGLK-SVAPNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPLPVVKVKLFTES-TGVLALEDK 417 (1218)
T ss_pred eeeEEEe-eecccc-ccCCCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCCceeEEEEEeec-ceeEEeech
Confidence 3557777 888887 222223 888 566665444 45799998888877777677888888776 22 2577
Q ss_pred eeEEEEEeccccccccCccceecCc
Q psy3954 125 VLGKVTIQRSDLHRISNKEHWFPLT 149 (268)
Q Consensus 125 ~iG~~~i~l~~l~~~~~~~~w~~L~ 149 (268)
-+|++.+.-..- ......|....
T Consensus 418 elgrvil~ptpn--s~ks~ewh~mt 440 (1218)
T KOG3543|consen 418 ELGRVILQPTPN--SAKSPEWHTMT 440 (1218)
T ss_pred hhCeEEEecCCC--CcCCccceeee
Confidence 899988743211 12234565543
No 310
>KOG0694|consensus
Probab=22.42 E-value=65 Score=30.93 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=34.7
Q ss_pred CCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCceEEEEEEecC
Q psy3954 189 CDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIELVVSLHHDI 244 (268)
Q Consensus 189 ~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~l~i~V~d~~ 244 (268)
.+||+.+.+.. .....+.+.+.+..|.|+|+|...+... ..+.|.|+...
T Consensus 28 l~~y~~v~vk~----~~~~~~~~~~~~~~~~~~~~F~~~v~~~--~~~~i~v~~~~ 77 (694)
T KOG0694|consen 28 LQPYLAVELKV----KQGAENMTKVELRIPELRETFHVEVVAG--GAKNIIVLLKS 77 (694)
T ss_pred hhhhheeccce----eecccccCCCCCCCchhhhheeeeeecC--CceEEEEEecC
Confidence 58888887761 2233555578899999999998875432 23778887764
No 311
>KOG2419|consensus
Probab=22.11 E-value=17 Score=34.34 Aligned_cols=71 Identities=10% Similarity=0.007 Sum_probs=45.0
Q ss_pred CeEEEEEceecCCCCC-----CCC-CCCEEEEEEEecCCcceeeeceeccCCCCCccceEEEEEccCCCCce-EEEEEEe
Q psy3954 170 TSLMVNVNEASGLTQV-----NGQ-CDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE-LVVSLHH 242 (268)
Q Consensus 170 ~~L~v~v~~a~~L~~~-----~g~-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~~ne~f~f~v~~~~~~~-l~i~V~d 242 (268)
|....+++.|.++++. .+. .++++...+. .+..+|+....+.+|+|||. +|....-+-.. |...|.+
T Consensus 280 gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~-----~~~frt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~ 353 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFG-----EQTFRTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVG 353 (975)
T ss_pred hhHHHHHhhhhcccchhhhhhhccCCCchheeecc-----hhhhhhhhhccccccccccc-ccccccchhhHHHhhhccc
Confidence 3344556666666532 222 5778888777 67889999999999999997 56554322222 5555555
Q ss_pred cCCC
Q psy3954 243 DISG 246 (268)
Q Consensus 243 ~~~~ 246 (268)
++.+
T Consensus 354 ~~~~ 357 (975)
T KOG2419|consen 354 YCEL 357 (975)
T ss_pred cccc
Confidence 4443
No 312
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=20.78 E-value=6e+02 Score=22.56 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=46.3
Q ss_pred cCcEEEEEecCCCcEEEEEEEeCCCCCCCCceeEEEEEeccc-cc-cccCccceecCcccCCCcccceEEEEEEE
Q psy3954 94 FGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSD-LH-RISNKEHWFPLTPVTQDSEVQGKIQIGVL 166 (268)
Q Consensus 94 wne~f~f~v~~~~~~l~~~v~d~d~~~~~d~~iG~~~i~l~~-l~-~~~~~~~w~~L~~~~~~~~~~G~i~v~l~ 166 (268)
-+|.....+...+.+|++.+|-.. +.+...||.+.+.+.. +. ..=+...||.+... +...++|.+|+.
T Consensus 102 IqqRV~IkIRQcDnTLkI~lfKKk--Lvkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kD---Gq~~cRIqLSFh 171 (508)
T PTZ00447 102 IDQRVDIKIRQCDETLRVDLFTTK--LTKKVHIGQIKIDINASVISKSFPKNEWFVCFKD---GQEICKVQMSFY 171 (508)
T ss_pred EeeeeeeeeeecCceEEEEEEecc--ccceeEEEEEEecccHHHHhccCCccceEEEecC---CceeeeEEEEeh
Confidence 345555566666889999999888 4567789999998763 22 22357889988432 333677777654
No 313
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=20.67 E-value=3.2e+02 Score=19.43 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=35.0
Q ss_pred CcEEEEEEEeCCCC--CCCCceeEEEEEeccccccc--------------cCccceecCcccCCCcccceEEEEEEEEc
Q psy3954 106 FRHLAVYAYDRDRT--SKTDRVLGKVTIQRSDLHRI--------------SNKEHWFPLTPVTQDSEVQGKIQIGVLST 168 (268)
Q Consensus 106 ~~~l~~~v~d~d~~--~~~d~~iG~~~i~l~~l~~~--------------~~~~~w~~L~~~~~~~~~~G~i~v~l~~~ 168 (268)
...|.+.+++.-.. ......||.+.+++.+.... .....-|+|.... ....|+|.+.++..
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~~~G~I~l~iRLs 104 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GNPVGEISLYIRLS 104 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--CceeeeEEEEEEEe
Confidence 45677777665411 34566899999998865411 1223345554322 23468777766543
Done!