RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3954
(268 letters)
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 117 bits (294), Expect = 1e-31
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 13/181 (7%)
Query: 91 SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQR--SDLHRISNKEHW 145
+P F E FQF +P R L YD DR S+ ++G+V + + ++ W
Sbjct: 67 NPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR-HDLIGQVVLDNLLELAEQPPDRPLW 125
Query: 146 FPLTPVTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTH 201
+ + G++ + PT+ L V + +AS L + G DP ++
Sbjct: 126 RDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185
Query: 202 NKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP--IELVVSL-HHDISGLNVFLGEVHIPL 258
+ +K+ +KK + +P +NE+ +FD + + L +++ +D G N +G +
Sbjct: 186 RRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 245
Query: 259 N 259
Sbjct: 246 E 246
Score = 62.2 bits (151), Expect = 2e-11
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 159 GKIQIGV--LSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
G+I + L L+V + +A L NG DP V ++ ++ ++KV +K
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPY--VKIYLLPDRKKKFQTKVHRK 64
Query: 215 SHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETS 264
+ +P+FNE+F F L + + + D + +G+V + +
Sbjct: 65 TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE 117
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 113 bits (284), Expect = 3e-30
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
Query: 91 SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
+P F E+F F +P + L + YD DR SK ++G+ + + + E W
Sbjct: 66 NPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSK-HDIIGEFKVPMNTVDFGHVTEEWRD 124
Query: 148 LTP-VTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHN 202
L ++ E G I + PT+ L V + EA L V G DP + +
Sbjct: 125 LQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK 184
Query: 203 KSDVQKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVSL-HHDISGLNVFLGEVHIPLN 259
+ +K+ +KK + +P +NESF F+ +++VV++ +D G N +G+V + N
Sbjct: 185 RLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 244
Query: 260 NKETSSSWW 268
+ W
Sbjct: 245 STGAELRHW 253
Score = 69.5 bits (170), Expect = 4e-14
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 155 SEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSK 210
SE GK+Q + + L+V + +A+ L + G DP V V +K ++K
Sbjct: 2 SEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKKKKFETK 59
Query: 211 VKKKSHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLN--NKETSS 265
V +K+ +PVFNE F F + + + D + +GE +P+N + +
Sbjct: 60 VHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVT 119
Query: 266 SWW 268
W
Sbjct: 120 EEW 122
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 80.5 bits (199), Expect = 4e-19
Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 154 DSEVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKV 211
E +G+I I L+V V +A L NG DP + + QK+K
Sbjct: 15 SMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKT 74
Query: 212 KKKSHSPVFNESFMFDRSLGDP-IELVVSL-HHDISGLNVFLGEVHIPLN--NKETSSSW 267
K S +P +NE+F F D L V + D++ N F+G + ++ K W
Sbjct: 75 IKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGW 134
Query: 268 W 268
+
Sbjct: 135 F 135
Score = 48.9 bits (117), Expect = 1e-07
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 92 PFFGEEFQFDIPR--RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149
P + E F+F + + R L+V +D D TS+ D +G ++ S+L + + + WF L
Sbjct: 81 PEWNETFRFQLKESDKDRRLSVEIWDWDLTSRND-FMGSLSFGISELQK-AGVDGWFKLL 138
Query: 150 P 150
Sbjct: 139 S 139
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 79.7 bits (197), Expect = 6e-19
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 155 SEVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVK 212
+E +G+I + T L V V +A L NG DP + + QK+K
Sbjct: 1 TEKRGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 60
Query: 213 KKSHSPVFNESFMFDRSLGDP-IELVVSL-HHDISGLNVFLGEVHIPLNN--KETSSSWW 268
+ + +P +NESF F D L V + D + N F+G + ++ K +S W+
Sbjct: 61 RSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWY 120
Score = 46.6 bits (111), Expect = 6e-07
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 92 PFFGEEFQFDIPRRF--RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLT 149
P + E F F + R L+V +D DRT++ D +G ++ S+L + W+ L
Sbjct: 66 PQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRND-FMGSLSFGVSELMK-MPASGWYKLL 123
Query: 150 P 150
Sbjct: 124 N 124
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 76.8 bits (189), Expect = 2e-17
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 152 TQDSEVQGKIQIGVLSTPTSLMVNVNEASGLT---QVNGQCDPTAMVTVHYTHNKSDVQK 208
T + G IQIG+ L V V A LT P V + +K
Sbjct: 12 TLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKK 71
Query: 209 SKVKKKSHSPVFNESFMFDRSL-GDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
+++ +K+ P++ +S +FD S G ++++V + F+G I L
Sbjct: 72 TRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124
Score = 49.4 bits (118), Expect = 1e-07
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 92 PFFGEEFQFDIPRRFRHLAVYAY-DRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150
P + + FD + + L V + D R +G I +L S W+ L P
Sbjct: 81 PLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKC-FMGVAQILLEELDLSSMVIGWYKLFP 139
Query: 151 VTQDSEVQGKIQIGVLSTPTSL 172
+ ++ +SL
Sbjct: 140 -PSSLVDPTLAPLTRRASQSSL 160
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 75.9 bits (187), Expect = 2e-17
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 149 TPVTQDSEVQGKIQIGV--LSTPTSLMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKS 204
+ E GK+Q + L+V + +A+ L + G DP V V +K
Sbjct: 11 GILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKK 68
Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLNNK 261
++KV +K+ +PVFNE F F + LV++ D + +GE +P+N
Sbjct: 69 KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Query: 262 ETSSSW 267
+
Sbjct: 129 DFGHVT 134
Score = 47.7 bits (114), Expect = 3e-07
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 92 PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
P F E+F F +P + L + YD DR SK ++G+ + + + E W L
Sbjct: 82 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK-HDIIGEFKVPMNTVDFGHVTEEWRDL 140
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 75.5 bits (186), Expect = 4e-17
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQ 207
E G I + PT+ L V + EA L V G DP + + + +
Sbjct: 5 GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKK 64
Query: 208 KSKVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNKETS 264
K+ +KK + +P +NESF F+ +++VV+ L +D G N +G+V + N+
Sbjct: 65 KTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE 124
Query: 265 SSWW 268
W
Sbjct: 125 LRHW 128
Score = 34.7 bits (80), Expect = 0.011
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 16/77 (20%)
Query: 91 SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTI----------QRSDLH 137
+P++ E F F++P + + V D D+ K D +GKV + SD+
Sbjct: 74 NPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKND-AIGKVFVGYNSTGAELRHWSDML 132
Query: 138 RISNK--EHWFPLTPVT 152
+ W L
Sbjct: 133 ANPRRPIAQWHTLQVEE 149
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 75.1 bits (185), Expect = 5e-17
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 154 DSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKS 209
+G++ + + T+ L V V +A L V+G DP V +++ + +K+
Sbjct: 12 IPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKT 71
Query: 210 KVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNKETSSS 266
VKK + + VFNE F+FD I + L + N +G + + + +
Sbjct: 72 HVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGG 131
Query: 267 WW 268
W
Sbjct: 132 HW 133
Score = 34.3 bits (79), Expect = 0.014
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 90 TSPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWF 146
+ F E F FDIP + D +R S+ + V+G++ + + S HW
Sbjct: 78 PNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNE-VIGRLVLGATA--EGSGGGHWK 134
Query: 147 -----PLTPVTQ 153
P + +
Sbjct: 135 EICDFPRRQIAK 146
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 73.9 bits (182), Expect = 9e-17
Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQ 207
+ + G ++ +L + L + A GL NG DP + + +KS+
Sbjct: 9 SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 68
Query: 208 KSKVKKKSHSPVFNESFMFDR-SLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLN--NK 261
++K + + +PV+NE+ + + D L +S D G N F+GE L
Sbjct: 69 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128
Query: 262 ETSSSWW 268
++
Sbjct: 129 NQRKNFN 135
Score = 39.3 bits (92), Expect = 3e-04
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 92 PFFGEEFQFD-IPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
P + E Q+ I + + L + D D+ + +G+ L K
Sbjct: 79 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGH-NEFIGETRFSLKKLKANQRKNFNIC 137
Query: 148 L 148
L
Sbjct: 138 L 138
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 74.0 bits (182), Expect = 1e-16
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 149 TPVTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKS 204
++ E GK+Q + + L+V + +A+ L + G DP V V +K
Sbjct: 19 KEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKK 76
Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLNNK 261
++KV +K+ +PVFNE F F + LV++ D + +GE +P+N
Sbjct: 77 KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
Query: 262 ETSSSW 267
+
Sbjct: 137 DFGHVT 142
Score = 49.7 bits (119), Expect = 6e-08
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 92 PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
P F E+F F +P + L + YD DR SK D ++G+ + + + E W L
Sbjct: 90 PVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHD-IIGEFKVPMNTVDFGHVTEEWRDL 148
Query: 149 TP 150
Sbjct: 149 QS 150
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 73.5 bits (181), Expect = 1e-16
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 12/127 (9%)
Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQ 207
+ E G+IQ V L V + +A L +G DP V ++ +K
Sbjct: 6 SGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDP--FVKIYLLPDKKHKL 63
Query: 208 KSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLN--NK 261
++KVK+K+ +P +NE+F+F+ + + L + L +D N +GEV IPLN +
Sbjct: 64 ETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL 123
Query: 262 ETSSSWW 268
++W
Sbjct: 124 TQMQTFW 130
Score = 48.9 bits (117), Expect = 1e-07
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 92 PFFGEEFQFD-IPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
P + E F F+ P R L + D DR S+ + +G+V+I + + + W
Sbjct: 74 PHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSR-NDPIGEVSIPLNKVDLTQMQTFWKD 132
Query: 148 LTPVTQDS 155
L P S
Sbjct: 133 LKPSGPSS 140
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 74.0 bits (182), Expect = 2e-16
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 149 TPVTQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKS 204
D E +GKI + ++ + L+V + L NG DP + + K
Sbjct: 14 VERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKK 73
Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNK 261
K+++KKK+ +P FNE F +D D L +S +DI N ++G + ++ K
Sbjct: 74 AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133
Query: 262 ETSSSWW 268
W
Sbjct: 134 GERLKHW 140
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 91 SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
+P F EEF +DI + L + +D D D +G + S +HW+
Sbjct: 86 NPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSND-YIGGCQLGISAKG--ERLKHWYE 142
Query: 148 L 148
Sbjct: 143 C 143
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 72.3 bits (178), Expect = 3e-16
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 159 GKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
G++ + + P++ ++VN+ +A L + G DP V + Y + + +K+ KK+
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 215 SHSPVFNESFMFDRSLGD--PIELVVS-LHHDISGLNVFLGEVHIPLNNKETSSSWW 268
+ +P+FNESF FD ++++ + D N +G++++ + W
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHW 119
Score = 35.0 bits (81), Expect = 0.007
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 85 SVNPVTSPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN 141
++NP+ F E F FDIP R + + D+D+ S+ D V+GK+ +
Sbjct: 63 NLNPI----FNESFAFDIPTEKLRETTIIITVMDKDKLSRND-VIGKIYLSWKSGP--GE 115
Query: 142 KEHWF-----PLTPVTQ 153
+HW P PV Q
Sbjct: 116 VKHWKDMIARPRQPVAQ 132
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 70.8 bits (174), Expect = 2e-15
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 154 DSEVQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKS 209
G++ I + L+V + A L + +P + + + +++
Sbjct: 3 SGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62
Query: 210 KVKKKSHSPVFNESFMFDRSLGDPIE---LVVSL-HHD--ISGLNVFLGEVHIPLN--NK 261
K KK+ P +N++F++ L ++L + FLGE+ I L
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL 122
Query: 262 ETSSSWW 268
+ W+
Sbjct: 123 DDEPHWY 129
Score = 43.8 bits (104), Expect = 6e-06
Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 85 SVNPVTSPFFGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDR-VLGKVTIQRSDLHRI 139
++ P + + F + R R L + +D+ R + + LG++ I+ +
Sbjct: 68 TLEPK----WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-L 122
Query: 140 SNKEHWFPLTP 150
++ HW+ L
Sbjct: 123 DDEPHWYKLQT 133
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 70.5 bits (173), Expect = 2e-15
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 18/133 (13%)
Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL---------TQVNGQCDPTAMVTVHYT 200
+ G + L V V EA L Q +P V +
Sbjct: 6 SGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNP--YVKICLL 63
Query: 201 HNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIP 257
++ + +++ VK+K+ PVF E + F+ + L+++ + D + +G+V +P
Sbjct: 64 PDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVP 123
Query: 258 LN--NKETSSSWW 268
L + WW
Sbjct: 124 LCEVDLVKGGHWW 136
Score = 52.4 bits (126), Expect = 7e-09
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 92 PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
P F E + F+IP + R L + D D+ S+ V+GKV++ ++ + W L
Sbjct: 81 PVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSR-HCVIGKVSVPLCEVDLVKGGHWWKAL 139
Query: 149 TPVTQDS 155
P S
Sbjct: 140 IPSGPSS 146
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 69.3 bits (170), Expect = 5e-15
Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 7/122 (5%)
Query: 149 TPVTQDSEVQGKIQIGV--LSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDV 206
+ + K+ + L V EA +G CD +V +
Sbjct: 3 SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH-DGGCDCYVQGSVANRTGSVE- 60
Query: 207 QKSKVKKKSHSPVFNESFMFDRSLGDPIE--LVVSL-HHDISGLNVFLGEVHIPLNNKET 263
++ +KK+ + E + + + L ++L D + GE+ + L+
Sbjct: 61 AQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV 120
Query: 264 SS 265
Sbjct: 121 PL 122
Score = 51.2 bits (123), Expect = 2e-08
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 92 PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
+ E + L + DR S+ V G++ + W L
Sbjct: 72 TTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHS-VAGELRLGLDGTSVPLGAAQWGEL 130
Query: 149 TPVTQDS 155
S
Sbjct: 131 KTSGPSS 137
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 69.0 bits (169), Expect = 6e-15
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 156 EVQGKIQIGVLSTPTSLMVNVNEASGLT--QVNGQCDP---------TAMVTVHYTHNKS 204
+ G+IQ+ + +L++++ +A L NG DP V V +
Sbjct: 4 PITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAE 63
Query: 205 DVQKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLNN 260
+++K +KS +P +N++ ++ + + L V+ +D N FLGEV I L++
Sbjct: 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
Score = 48.2 bits (115), Expect = 2e-07
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 92 PFFGEEFQFD-IPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
P + + + I + L V +D DR S D LG+V I S + N W+P
Sbjct: 77 PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSND-FLGEVLIDLSSTSHLDNTPRWYP 135
Query: 148 LTPVTQ 153
L T+
Sbjct: 136 LKEQTE 141
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 69.3 bits (170), Expect = 6e-15
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 154 DSEVQGKIQIGVLSTPTS--LMVNVNEASGLT---QVNGQCDPTAMVTVHYTHNKSDVQK 208
+ V G+I + + L+V+V E L + + +P + ++ +K
Sbjct: 5 NIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRK 64
Query: 209 SKVKKKSHSPVFNESFMFDRSLGDPIE--LVVS-LHHDISGLNVFLGEVHIPLNNKE 262
+ +K+ + +P+++E+ ++ + L S HH G N FLGE I +++ +
Sbjct: 65 TSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK 121
Score = 48.5 bits (116), Expect = 2e-07
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 92 PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
P + E +++IP R L + R + LG+ IQ +H PL
Sbjct: 74 PLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNT-FLGEAEIQMDSWKLDKKLDHCLPL 132
Query: 149 TPVTQDSE 156
Sbjct: 133 HGKISAES 140
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 68.5 bits (168), Expect = 8e-15
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 12/124 (9%)
Query: 157 VQGKIQIGVLSTPTS--LMVNVNEASGLT--QVNGQCDPTAMVTVHYTHNKSDVQKSKVK 212
+ G++ I + L+V + A L + +P + + + +++K
Sbjct: 3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTV 62
Query: 213 KKSHSPVFNESFMFDRSLGDPIE---LVVSL-HHD--ISGLNVFLGEVHIPLN--NKETS 264
KK+ P +N++F++ L ++L + FLGE+ I L +
Sbjct: 63 KKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE 122
Query: 265 SSWW 268
W+
Sbjct: 123 PHWY 126
Score = 41.5 bits (98), Expect = 4e-05
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 92 PFFGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDR-VLGKVTIQRSDLHRISNKEHWF 146
P + + F + R R L + +D+ R + + LG++ I+ + ++ HW+
Sbjct: 68 PKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL-LDDEPHWY 126
Query: 147 PL 148
L
Sbjct: 127 KL 128
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 68.6 bits (168), Expect = 1e-14
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 152 TQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQV-NGQCDPTAMVTVHYTHNKSDVQKSK 210
+ + G++++ + + L++++ E GL G CDP +++ ++ QK++
Sbjct: 9 SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQ 68
Query: 211 VKKKSHSPVFNESFMFDRSLGDPIE--LVVSLHHD-ISGLNVFLGEVHIPLNNKETSS 265
P F+E F F D + LV + S + +G + + + T
Sbjct: 69 TVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPD 126
Score = 51.2 bits (123), Expect = 2e-08
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 92 PFFGEEFQFDIPRRF--RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK-EHWFPL 148
P F E F F + + L V ++R S+ ++G ++ L + W+ L
Sbjct: 76 PAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135
Query: 149 TP 150
Sbjct: 136 LG 137
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 66.9 bits (164), Expect = 3e-14
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 153 QDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNKSDVQKSKV 211
G +++ V +L + V L +G +P + +K+ +K+K+
Sbjct: 3 HHHHGSGAVKLSVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKI 62
Query: 212 KKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLNN 260
+K+ +P FNE ++ + + L +S L + N FLG + +PL +
Sbjct: 63 SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKD 115
Score = 46.5 bits (111), Expect = 8e-07
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 92 PFFGEEFQFDIPR----RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
P F E + R R L + + + LG +T+ D + W+
Sbjct: 69 PTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENF-FLGGITLPLKDFNLSKETVKWYQ 127
Query: 148 LTPVT 152
LT T
Sbjct: 128 LTAAT 132
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 65.5 bits (160), Expect = 2e-13
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 8/115 (6%)
Query: 159 GKIQIGVL--STPTSLMVNVNEASGL--TQVNGQCDPTAMVTVH-YTHNKSDVQKSKVKK 213
+IQI + + + + S L V V + + + + +++
Sbjct: 30 TRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD 89
Query: 214 KSHSPVFNESFMFDRSLGDPIE--LVVSL-HHDISGLNVFLGEVHIPLNNKETSS 265
S + VFNE F S + L V + D S L LG I L S
Sbjct: 90 ASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSG 144
Score = 41.3 bits (97), Expect = 6e-05
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 92 PFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK-EHWFP 147
F E F + + L V DR+ + LG I +++ R + W+
Sbjct: 94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEE-CLGGAQISLAEVCRSGERSTRWYN 152
Query: 148 L 148
L
Sbjct: 153 L 153
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 63.9 bits (156), Expect = 4e-13
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 150 PVTQDSEVQGKIQIGV--LSTPTSLMVNVNEASGLTQVNGQ-CDPTAMVTVHYTHNKSDV 206
G+IQ+ + S L+V V+ L + DP + + +S
Sbjct: 2 SSGSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGR 61
Query: 207 QKSKVKKKSHSPVFNESFMFDRSLGD--PIELVVS-LHHD--ISGLNVFLGEVHIPLNNK 261
+K+ V KK+ +PVF++SF F SL + L V+ + +S LG+V + L ++
Sbjct: 62 RKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
Query: 262 ETSSSW 267
E + W
Sbjct: 122 ELAKGW 127
Score = 54.7 bits (132), Expect = 1e-09
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 91 SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDR-VLGKVTIQRSDLHRISNKEHWF 146
+P F + F F + + R L V + D+ +LGKV + + W+
Sbjct: 72 NPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWY 131
Query: 147 PLTPVTQDSE 156
LT + S
Sbjct: 132 DLTEDSGPSS 141
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 63.9 bits (156), Expect = 5e-13
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL---TQVNGQCDPTAMVTVHYTHNKSDV 206
+ S G + + +VN+ EA GL + + DP + + K
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDP--YIKMTILPEKKHK 59
Query: 207 QKSKVKKKSHSPVFNESFMFDRSLGDPIE---LVVS-LHHDISGLNVFLGEVHIPLNN-- 260
K++V +K+ P F+E+F F I+ L + L D + +GEV IPL+
Sbjct: 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
Query: 261 --KETSSSWW 268
+
Sbjct: 120 LSEGKMLMNR 129
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 60.3 bits (146), Expect = 2e-11
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 172 LMVNVNEASGLTQ--VNGQCDPTAMVTV-HYTHNKSDVQKSKVKKKSHSPVFNESFMFDR 228
+ V V GL + + G DP VT+ ++K KKS +P +NE +F
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 229 SLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
L + + FLG+V +PL
Sbjct: 70 LPQRHRILFEVFDENRLTRDDFLGQVDVPLYP 101
Score = 56.8 bits (137), Expect = 4e-10
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 92 PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDL------HRISNKEHW 145
P + EE F + + + +D +R ++ D LG+V + L
Sbjct: 59 PKWNEEILFRVLPQRHRILFEVFDENRLTRDDF-LGQVDVPLYPLPTENPRMERPYTFKD 117
Query: 146 FPLTPVTQDSEVQGKIQIGVLSTPT--SLMVNVNEASGL 182
F L P + S V+G +++ + P S N ++A L
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEEL 156
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 59.3 bits (144), Expect = 2e-11
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 172 LMVNVNEASGL-TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD--- 227
L V V AS + G+ DP +V+V + K +K+K +PV+NE FD
Sbjct: 9 LRVIVESASNIPKTKFGKPDP--IVSVIFKDEK---KKTKKVDNELNPVWNEILEFDLRG 63
Query: 228 --RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN--KETSSSWW 268
+ ++V + G N +G + L + + S S
Sbjct: 64 IPLDFSSSLGIIV-KDFETIGQNKLIGTATVALKDLTGDQSRSLP 107
Score = 49.3 bits (118), Expect = 7e-08
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 85 SVNPVTSPFFGEEFQFDIPRR----FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRIS 140
+NPV + E +FD+ L + D + + ++++G T+ DL
Sbjct: 48 ELNPV----WNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ-NKLIGTATVALKDLTGDQ 102
Query: 141 NKEHWFPLTPV--TQDSEVQGKIQIGVLSTPTS 171
++ + L + + + I + + P S
Sbjct: 103 SRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 58.1 bits (141), Expect = 5e-11
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 172 LMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-R 228
L V V +A+ L +G+ DP ++ + +D ++ K+ +P +N+ F F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIK 69
Query: 229 SLGDPIELVVSLHHDISGLNVFLGEVHIPLNN-KETSSSWW 268
+ D +E+ V D FLG+V IPL + ++ + +
Sbjct: 70 DIHDVLEVTV-FDEDGDKPPDFLGKVAIPLLSIRDGQPNCY 109
Score = 56.9 bits (138), Expect = 1e-10
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 92 PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRIS-NKEHWFPLTP 150
P + + F F I L V +D D D LGKV I L I + + + L
Sbjct: 58 PEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD-FLGKVAI---PLLSIRDGQPNCYVLKN 113
Query: 151 VTQDSEVQGKIQIGV 165
+ +G I + +
Sbjct: 114 KDLEQAFKGVIYLEM 128
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 58.6 bits (142), Expect = 5e-11
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 172 LMVNVNEASGLTQ--VNGQCDPTAMVTV-HYTHNKSDVQKSKVKKKSHSPVFNESFMFD- 227
+ V V GL + + G DP VT+ + ++K KKS +P +NE +F
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
Query: 228 RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
+ V + + FLG+V +PL
Sbjct: 82 HPQQHRLLFEV-FDENRLTRDDFLGQVDVPLYP 113
Score = 54.8 bits (132), Expect = 1e-09
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 92 PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDL------HRISNKEHW 145
P + EE F + + L +D +R ++ D LG+V + L
Sbjct: 71 PKWNEEILFRVHPQQHRLLFEVFDENRLTRDDF-LGQVDVPLYPLPTENPRLERPYTFKD 129
Query: 146 FPLTPVTQDSEVQGKIQIGVLSTP 169
F L P + S V+G +++ + P
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMTYLP 153
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 57.9 bits (140), Expect = 6e-11
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 171 SLMVNVNEASGL-------------TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHS 217
L + + EA L DP + V + S + ++ K+K++S
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNS 62
Query: 218 PVFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLN 259
P +++ F+ D G IEL V H G + F+ I
Sbjct: 63 PAWHDEFVTDVCNGRKIELAV-FHDAPIGYDDFVANCTIQFE 103
Score = 55.6 bits (134), Expect = 4e-10
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 91 SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHR--ISNKEHWFPL 148
SP + +EF D+ R + + + D + TIQ +L + + E W L
Sbjct: 62 SPAWHDEFVTDVC-NGRKIELAVFHDAPIGY-DDFVANCTIQFEELLQNGSRHFEDWIDL 119
Query: 149 TPVTQDSEVQGKIQIGV 165
E +GK+ + +
Sbjct: 120 -------EPEGKVYVII 129
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 55.8 bits (135), Expect = 3e-10
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
+ + V A L DP A + V + K + P +N+ +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVD---GSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 230 LGDPIELVV-----SLHHDISGLNVFLGEVHIPLNN 260
D I + V +G FLG V + N
Sbjct: 64 KTDSITISVWNHKKIHKKQGAG---FLGCVRLLSNA 96
Score = 40.4 bits (95), Expect = 8e-05
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 91 SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDR--VLGKVTIQRSDLHRISNKEHWFPL 148
P + + + + + + + ++ + K LG V + + + R+ + + L
Sbjct: 51 DPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG-YQRL 108
Query: 149 TPV----TQDSEVQGKIQI 163
+ V+G+I +
Sbjct: 109 DLCKLNPSDTDAVRGQIVV 127
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 56.5 bits (136), Expect = 3e-10
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 171 SLMVNVNEASGL------------TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSP 218
L V + EA GL + + DP V+V V ++ K+K++ P
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVR----VGQTSTKQKTNKP 85
Query: 219 VFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
+NE F + + G +EL V H G + F+ +
Sbjct: 86 TYNEEFCANVTDGGHLELAV-FHETPLGYDHFVANCTLQFQE 126
Score = 53.1 bits (127), Expect = 5e-09
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 13/79 (16%)
Query: 91 SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK----EHWF 146
P + EEF ++ HL + + D + T+Q +L R + E W
Sbjct: 84 KPTYNEEFCANVTDG-GHLELAVFHETPLGY-DHFVANCTLQFQELLRTTGASDTFEGWV 141
Query: 147 PLTPVTQDSEVQGKIQIGV 165
L P +GK+ + +
Sbjct: 142 DLEP-------EGKVFVVI 153
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 56.0 bits (135), Expect = 6e-10
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 164 GVLSTPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFN 221
G L+ + L + V A + P VTV +K++ ++SP +
Sbjct: 30 GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWK 84
Query: 222 ESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
+ + + V H +V LG + +
Sbjct: 85 QPLTVIVTPVSKLHFRV-WSHQTLKSDVLLGTAALDIYE 122
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 53.9 bits (130), Expect = 1e-09
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 168 TPTSLMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNE 222
+ V V A+ +T+ + DP V + + ++++ +PV+NE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRTRHFNNDINPVWNE 58
Query: 223 SFMF--DRSLGDPIELVV----SLHHDISGLNVFLGEVHIPLN 259
+F F D + + +E+ + + + LG ++
Sbjct: 59 TFEFILDPNQENVLEITLMDANYVMDE------TLGTATFTVS 95
Score = 42.7 bits (101), Expect = 1e-05
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 85 SVNPVTSPFFGEEFQFDIPRRF-RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKE 143
+NPV + E F+F + L + D + D LG T S + KE
Sbjct: 51 DINPV----WNETFEFILDPNQENVLEITLMDANYV--MDETLGTATFTVSSMKVGEKKE 104
Query: 144 HWFPLTPVTQ 153
F VT+
Sbjct: 105 VPFIFNQVTE 114
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 54.0 bits (130), Expect = 2e-09
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 157 VQGKIQIGVLSTPTSLMVNVNEASGLTQ--VNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
V+ + G + + V A GL G DP V V +++K
Sbjct: 4 VKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQV-----GKTKKRTKTIYG 58
Query: 215 SHSPVFNESFMFD-RSLGDPIELVV----------SLHHDISGLNVFLGEVHIPLN 259
+ +PV+ E+F F+ + D I++ V + FLG+ I +
Sbjct: 59 NLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR 114
Score = 50.2 bits (120), Expect = 5e-08
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 12/85 (14%)
Query: 91 SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKT----------DRVLGKVTIQRSDLHRIS 140
+P + E F F+ + V D D K+ D LG+ I+ L
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG-- 118
Query: 141 NKEHWFPLTPVTQDSEVQGKIQIGV 165
+ W+ L T S V G I++ +
Sbjct: 119 EMDVWYNLDKRTDKSAVSGAIRLHI 143
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 52.7 bits (127), Expect = 4e-09
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFD-R 228
L V + A GL DP +T D + + + +P +NE+F+F
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 229 SLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
++ + D+ + +GE IPL
Sbjct: 68 EGTTELKAKI-FDKDVGTEDDAVGEATIPLEP 98
Score = 50.8 bits (122), Expect = 2e-08
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 92 PFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPV 151
P + E F F + L +D+D ++ D +G+ TI + V
Sbjct: 56 PEWNETFIFTVSEGTTELKAKIFDKDVGTE-DDAVGEATIPLEPV--FVEGSIPPTAYNV 112
Query: 152 TQDSEVQGKIQIGVLSTPT 170
+D E +G+I + + P+
Sbjct: 113 VKDEEYKGEIWVALSFKPS 131
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 44.9 bits (105), Expect = 2e-05
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 172 LMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF 226
V V A+ +T+ + DP V + + ++++ +PV+NE+F F
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77
Query: 227 DRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
L ++L ++ LG +++
Sbjct: 78 ILDPNQENVLEITLMDANYVMDETLGTATFTVSS 111
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 41.1 bits (96), Expect = 5e-05
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 15/102 (14%)
Query: 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG 231
L V V +A + + + V +V+ + + + P + + FMF +
Sbjct: 7 LCVGVKKAKFDGAQ-EKFNTYVTLKV------QNVKSTTIAVRGSQPSWEQDFMF--EIN 57
Query: 232 DP-IELVVSLHHDISGLNVFLGEVHIPLN-----NKETSSSW 267
+ L V + + + +G V IPL N+E W
Sbjct: 58 RLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEW 99
Score = 31.5 bits (71), Expect = 0.13
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 90 TSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEH--WFP 147
+ P + ++F F+I R L V +++ D ++G V I + + + + W
Sbjct: 44 SQPSWEQDFMFEINRLDLGLTVEVWNKGLIW--DTMVGTVWIPLRTIRQSNEEGPGEWLT 101
Query: 148 LTP--VTQDSEVQG 159
L + DSE+ G
Sbjct: 102 LDSQAIMADSEICG 115
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 42.3 bits (98), Expect = 1e-04
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 3/123 (2%)
Query: 83 SPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAY-DRDRTSKTDRV--LGKVTIQRSDLHRI 139
P + F+GE F+F+ R L ++ Y D D+ K D+ +G VT+ + L
Sbjct: 46 KPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGR 105
Query: 140 SNKEHWFPLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHY 199
E W+P+T T G G + ++ + +++ +
Sbjct: 106 HFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMEL 165
Query: 200 THN 202
Sbjct: 166 YKE 168
Score = 38.8 bits (89), Expect = 0.001
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 12/111 (10%)
Query: 165 VLSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESF 224
L + + EA L + + + + + E F
Sbjct: 6 SRRVDNVLKLWIIEARELPPK---KRYYCELCLD-DMLYARTTSKPRSASGDTVFWGEHF 61
Query: 225 MFDRSLGDPIELVVSLHHDIS-----GLNVFLGEVHIPLNNKETSSS--WW 268
F+ L + L+ D ++G V +P+ W
Sbjct: 62 EFNNLPAVR-ALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 4e-04
Identities = 37/315 (11%), Positives = 87/315 (27%), Gaps = 81/315 (25%)
Query: 13 HTTYKLMVNHATYKLMVKHTAYKYYLQPRKRLTANQIIQDLGTLRIRIQYTADHIL-QPH 71
H ++ + YK ++ + + +QD+ I + DHI+
Sbjct: 6 HMDFETGEHQYQYKDILSV-----FEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKD 59
Query: 72 YYED---LCTQILNSPSVNPVTSPFFGEEFQFD---IPRRFRH--------LAVYAYDRD 117
L +L+ + F E + + + + +Y RD
Sbjct: 60 AVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 118 RTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP--------------------VTQDSEV 157
R ++V K + R + + ++ L P V +V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 158 QGK-------IQIGVLSTPTSLMVNVNE-----ASGLTQVNGQCDPTAMVTVHYTHNKSD 205
Q K + + ++P +++ + + T + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 206 VQKSKVKKKS--------HSPVFNESFMF---------DRSLGDPIELVVSLHHDISGLN 248
+ KSK + ++ + +F + + D + + H
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATTTH------- 288
Query: 249 VFLGEVHIPLNNKET 263
+ L + L E
Sbjct: 289 ISLDHHSMTLTPDEV 303
Score = 32.9 bits (74), Expect = 0.12
Identities = 47/312 (15%), Positives = 85/312 (27%), Gaps = 103/312 (33%)
Query: 17 KLMVNHATYKLMVKHTAYKYYLQPRKRLT------------ANQIIQDLGT--------- 55
K V+ L ++ + L+P K + A +
Sbjct: 128 KYNVSRLQPYLKLRQALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 56 -LRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRFRHLAVYAY 114
L ++ + + +L+ + L QI + + D +
Sbjct: 186 WLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRS------------DHSSNIKLRIHSIQ 231
Query: 115 DRDRTSKTDRVLGKVTIQRS--DLHRISNKEHW--FP------LTPVTQDSEVQGKIQIG 164
R R+L + L + N + W F LT T+ +V
Sbjct: 232 AELR-----RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQV-----TD 279
Query: 165 VLSTPTSLMVNVNEAS-GLTQ------------VNGQCDPTAMVTVHYTH---------- 201
LS T+ ++++ S LT Q P ++T +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 202 --NKSD-VQKSKVKKKSHSPVFNESFMFDRSLG--DPIELVVSLHHDISGLNVFLGEVHI 256
D + K + + + SL +P E + +S VF HI
Sbjct: 340 GLATWDNWKHVNCDKLTT--------IIESSLNVLEPAEYR-KMFDRLS---VFPPSAHI 387
Query: 257 PLNNKETSSSWW 268
P S W
Sbjct: 388 PT---ILLSLIW 396
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 38.8 bits (90), Expect = 6e-04
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 172 LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLG 231
L V V +A + + + V +V+ + + + P + + FMF+ +
Sbjct: 16 LCVGVKKAK-FDGAQEKFNTYVTLKV------QNVESTTIAVRGSQPSWEQDFMFEINRL 68
Query: 232 DPIELVVSLHHDISGLNVFLGEVHIPLN-----NKETSSSW 267
D + L V + + + +G V IPL N+E W
Sbjct: 69 D-LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEW 108
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 38.7 bits (89), Expect = 0.001
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 10/89 (11%)
Query: 174 VNVNEASGL-TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF---DRS 229
V+ A L D V ++ V +++P + + F S
Sbjct: 398 VSNFRAEHLWGDYTTATDAYLKVFFG-----GQEFRTGVVWNNNNPRWTDKMDFENVLLS 452
Query: 230 LGDPIELVVSLHHDISGLNVFLGEVHIPL 258
G P+ + V D + LG
Sbjct: 453 TGGPLRVQV-WDADYGWDDDLLGSCDRSP 480
Score = 32.2 bits (72), Expect = 0.16
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 76 LCTQILNSPSVNPVTSPFFGEEFQFDI--PRRFRHLAVYAYDRDRTSKTDRVLGKVTIQR 133
Q + V +P + ++ F+ L V +D D D LG
Sbjct: 422 FGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL-LGSCDR-- 478
Query: 134 SDLHRISNKEHWFPL 148
H + E L
Sbjct: 479 -SPHSGFH-EVTCEL 491
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 33.9 bits (77), Expect = 0.018
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 173 MVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGD 232
+ N + S + +P V V + Q KK + P ++ +F + G
Sbjct: 16 LSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKGR 75
Query: 233 PIELVVSLHHDISGLNVFLGEVHIPL 258
++++V + + E + L
Sbjct: 76 VMQIIV-KGKN----VDLISETTVEL 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.030
Identities = 36/212 (16%), Positives = 64/212 (30%), Gaps = 82/212 (38%)
Query: 31 HTAYKYYLQPRKRLTANQIIQDL-----GT----LRIR----------IQYTADHILQPH 71
+ AY P L I++D G L I + T H L
Sbjct: 311 YEAY-----PNTSLPP-SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAG 363
Query: 72 YYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPR-------RFRHL-AVYAYDRDRTSKTD 123
+ + ++N V+ P P+ R A D+ R ++
Sbjct: 364 --KQVEISLVNGAKNLVVSGP----------PQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 124 RVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQIGVLSTP--TSLMVNVNE--A 179
R K+ +R F L PV +P + L+V ++
Sbjct: 412 R---KLKFS----NR-------F-L-PVA---------------SPFHSHLLVPASDLIN 440
Query: 180 SGLTQVNGQCDPTAM-VTVHYTHNKSDVQKSK 210
L + N + + + V+ T + SD++
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Score = 28.1 bits (62), Expect = 4.6
Identities = 26/142 (18%), Positives = 40/142 (28%), Gaps = 63/142 (44%)
Query: 88 PVTSPFF----------------GEEFQFD-----IPRRFRHLAVYA-YD-RDRTSKTDR 124
PV SPF F+ IP VY +D D +
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-------VYDTFDGSDLRVLSGS 474
Query: 125 VLGKVT--IQRSDLHRISNKEHW-------------F-P-----LTPVTQDSEVQGKIQI 163
+ ++ I R + W F P L +T + G
Sbjct: 475 ISERIVDCIIRLPV-------KWETTTQFKATHILDFGPGGASGLGVLTHRN-KDGT--- 523
Query: 164 GV-LSTPTSLMVNVNEASGLTQ 184
GV + +L +N ++ G Q
Sbjct: 524 GVRVIVAGTLDINPDDDYGFKQ 545
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 32.2 bits (72), Expect = 0.16
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 167 STPTSLMVNVNEASGLTQVNGQC----DPTAMVTVHYTHNKSDVQKSKVKK-KSHSPVFN 221
P L V + L +VN DP +V +H + +++ V +P ++
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553
Query: 222 ESFMFDRSLGDPIELVVSLH-HDISGLNVFLGEVHIPLNN 260
F F+ ++ D + + +D S N F+G+ IP N+
Sbjct: 554 MEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 593
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 27.0 bits (59), Expect = 3.5
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 174 VNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233
N E L + P V + + + KK + P + +F G
Sbjct: 12 FNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGRV 71
Query: 234 IELVVSLHHDISGLNVFLGEVHIPLNN 260
I++V+ + + EV + ++
Sbjct: 72 IQIVL-----MRAAEEPVSEVTVGVSV 93
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura
genomics, seattle structural genomics center for
infectious; NMR {Giardia lamblia}
Length = 130
Score = 26.8 bits (60), Expect = 4.1
Identities = 14/50 (28%), Positives = 15/50 (30%), Gaps = 7/50 (14%)
Query: 153 QDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNGQCDPTA--MVTVHYT 200
G S L V LT +G P A VTVHY
Sbjct: 7 HHMGTLEAQTQGPGSMSAQLEKKV-----LTPGDGVTKPQAGKKVTVHYD 51
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase,
isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Length = 167
Score = 27.0 bits (60), Expect = 4.5
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 164 GVLSTPTSLMVNVNEASGLTQVNGQCDPTA--MVTVHYT 200
+ P+ L+ + + +G+ P VHYT
Sbjct: 31 DAVKLPSGLVFQR-----IARGSGKRAPAIDDKCEVHYT 64
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 27.1 bits (61), Expect = 6.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 54 GTLRIRIQYTADH 66
GT R+R+ TA H
Sbjct: 356 GTARLRLTLTAAH 368
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 26.8 bits (60), Expect = 8.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 54 GTLRIRIQYTADH 66
G RIR Q +A H
Sbjct: 366 GQARIRTQMSAAH 378
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 26.8 bits (60), Expect = 9.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 54 GTLRIRIQYTADH 66
G RIR+Q +A H
Sbjct: 365 GKARIRVQMSAVH 377
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,892,824
Number of extensions: 218735
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 91
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)