RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3954
(268 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 63.6 bits (154), Expect = 2e-13
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 159 GKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
G++ + + T+ L V V +A L + V+G DP V +++ + +K+ VKK
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 215 SHSPVFNESFMFD---RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
+ + VFNE F+FD SL + + L + N +G + + + + W
Sbjct: 62 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHW 118
Score = 37.4 bits (86), Expect = 4e-04
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 91 SPFFGEEFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
+ F E F FDIP + D +R S+ + V+G++ + + S HW
Sbjct: 64 NAVFNELFVFDIPCESLEEISVEFLVLDSERGSR-NEVIGRLVLGATAEG--SGGGHWKE 120
Query: 148 L 148
+
Sbjct: 121 I 121
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 61.6 bits (149), Expect = 8e-13
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 156 EVQGKIQIGVLSTPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKK 213
E +G+I I L+V V +A L NG DP + + QK+K K
Sbjct: 1 ERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60
Query: 214 KSHSPVFNESFMF---DRSLGDPIELVVSLHHDISGLNVFLGEVHIPLN 259
S +P +NE+F F + + + + D++ N F+G + ++
Sbjct: 61 CSLNPEWNETFRFQLKESDKDRRLSVEI-WDWDLTSRNDFMGSLSFGIS 108
Score = 43.9 bits (103), Expect = 2e-06
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 91 SPFFGEEFQFDIPRRF--RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
+P + E F+F + R L+V +D D TS+ + +G ++ S+L + + + WF L
Sbjct: 64 NPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR-NDFMGSLSFGISELQK-AGVDGWFKL 121
Query: 149 TPV 151
Sbjct: 122 LSQ 124
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 58.6 bits (141), Expect = 1e-11
Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Query: 159 GKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
G++ I + L+V + A L + +P + + + +++K KK
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 215 SHSPVFNESFMFDRSLGDPIE---LVVSL-HHD--ISGLNVFLGEVHIPLNN 260
+ P +N++F++ L ++L + FLGE+ I L
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 112
Score = 41.6 bits (97), Expect = 1e-05
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 90 TSPFFGEEFQFDIPRRF----RHLAVYAYDRDRTSKT-DRVLGKVTIQRSDLHRISNKEH 144
P + + F + R R L + +D+ R + LG++ I+ ++ H
Sbjct: 62 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL-DDEPH 120
Query: 145 WFPL 148
W+ L
Sbjct: 121 WYKL 124
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 58.7 bits (141), Expect = 2e-11
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 156 EVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKV 211
E G I + PT+ L V + EA L V G DP + + + +K+ +
Sbjct: 9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI 68
Query: 212 KKKSHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETSSSWW 268
KK + +P +NESF F+ ++ V + +D G N +G+V + N+ W
Sbjct: 69 KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 128
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 53.7 bits (128), Expect = 8e-10
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 159 GKIQIGVLSTPTS--LMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQK--SKVKKK 214
GKI + ++ + L+V + L ++ V + + K +++KKK
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 215 SHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETSSSWW 268
+ +P FNE F +D D + + + +DI N ++G + ++ K W
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHW 118
Score = 36.3 bits (83), Expect = 8e-04
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 37 YLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVT-SPFFG 95
Y + L II+ + + +D ++ D+ + + + T +P F
Sbjct: 10 YSTQQGGLIVG-IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 68
Query: 96 EEFQFDIPRR---FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150
EEF +DI + L + +D D D +G + S +HW+
Sbjct: 69 EEFFYDIKHSDLAKKSLDISVWDYDIGKSND-YIGGCQLGISAKGE--RLKHWYECLK 123
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 52.8 bits (126), Expect = 2e-09
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQ 207
++ E GK+Q + + L+V + +A+ L + G DP V V +K
Sbjct: 14 PKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDP--YVKVFLLPDKKKKF 71
Query: 208 KSKVKKKSHSPVFNESFMFD---RSLGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETS 264
++KV +K+ +PVFNE F F LG ++ D + +GE +P+N +
Sbjct: 72 ETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
Score = 39.0 bits (90), Expect = 1e-04
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 91 SPFFGEEFQFDIPRRF---RHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
+P F E+F F +P + L + YD DR SK ++G+ + + + E W
Sbjct: 81 NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK-HDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 148 L 148
L
Sbjct: 140 L 140
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 51.7 bits (123), Expect = 5e-09
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 159 GKIQIGVLSTPTS--LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKK 214
G++ + PT+ L V + +AS L + G DP ++ + +K+ +KK
Sbjct: 7 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66
Query: 215 SHSPVFNESFMFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNNKETS 264
+ +P +NE+ +FD + + +S+ +D G N +G + +
Sbjct: 67 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 49.8 bits (118), Expect = 2e-08
Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 169 PTSLMVNVNEASGLTQV----NGQCDPTAMVTVHYTHNKSDVQKSKVKKKSH-SPVFNES 223
P L V + L +V N DP +V +H + +++ V + +P ++
Sbjct: 3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDME 62
Query: 224 FMFDRSL-GDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
F F+ ++ + + +D S N F+G+ IP N+ +
Sbjct: 63 FEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHV 108
Score = 33.2 bits (75), Expect = 0.010
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 91 SPFFGEEFQFDIP-RRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPL 148
+P + EF+F++ + D D +SK + +G+ TI + + L
Sbjct: 56 NPRWDMEFEFEVTVPDLALVRFMVEDYDSSSK-NDFIGQSTI---PWNSLKQGYRHVHL 110
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 47.4 bits (112), Expect = 1e-07
Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
L V + A GL DP +T KS+V + +P +NE+F+F S
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNV----AEGMGTTPEWNETFIFTVS 67
Query: 230 LGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSS 266
G D+ + +GE IPL S
Sbjct: 68 EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS 104
Score = 44.7 bits (105), Expect = 1e-06
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 54 GTLRIRIQYTAD-------HILQPHYYEDLCTQILNSPSVNPVTS-PFFGEEFQFDIPRR 105
GTL + + + + P+ TQ S + + P + E F F +
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 106 FRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN-KEHWFPLTPVTQDSEVQGKIQIG 164
L +D+D ++ D +G+ TI + + + + +D E +G+I +
Sbjct: 70 TTELKAKIFDKDVGTE-DDAVGEATIPLEPVFVEGSIPPTAYNV---VKDEEYKGEIWVA 125
Query: 165 VLSTP 169
+ P
Sbjct: 126 LSFKP 130
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 47.1 bits (111), Expect = 1e-07
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 50 IQDLGTLRIRIQYTADHILQ-------PHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDI 102
++D+G L++++ AD + P +L L + +V +P + + F F I
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 103 PRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEVQGKIQ 162
L V +D D K LGKV I + + + + L + +G I
Sbjct: 62 KDIHDVLEVTVFDEDG-DKPPDFLGKVAIPLLSIRD--GQPNCYVLKNKDLEQAFKGVIY 118
Query: 163 I 163
+
Sbjct: 119 L 119
Score = 38.2 bits (88), Expect = 2e-04
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 172 LMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRS 229
L V V +A+ L +G+ DP + +D ++ K+ +P +N+ F F
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCL-----LELGNDRLQTHTVYKNLNPEWNKVFTFPIK 62
Query: 230 LGDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
+ V D FLG+V IPL +
Sbjct: 63 DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNC 101
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 46.6 bits (110), Expect = 3e-07
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 152 TQDSEVQGKIQIGVLSTPTS--LMVNVNEASGLTQVN-GQCDPTAMVTVHYTHNKSDVQK 208
+ S G + + +VN+ EA GL ++ + + K K
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVK 61
Query: 209 SKVKKKSHSPVFNESF-MFDRSLGDPIELVVSL---HHDISGLNVFLGEVHIPLNN 260
++V +K+ P F+E+F + EL + D + +GEV IPL+
Sbjct: 62 TRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117
Score = 33.2 bits (75), Expect = 0.012
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 30/132 (22%)
Query: 52 DLGTLRIRIQYTAD------HILQ-------------PHYYEDLC-----TQILNSPSVN 87
LGTL ++Y + +I + Y + + + +
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR 66
Query: 88 PVTSPFFGEEFQFDIP----RRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKE 143
P F E F F + L DR S+ D ++G+V I S + +S +
Sbjct: 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSR-DDIIGEVLIPLSGIE-LSEGK 124
Query: 144 HWFPLTPVTQDS 155
++ S
Sbjct: 125 MLMNREIISGPS 136
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 46.4 bits (109), Expect = 3e-07
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 157 VQGKIQIGVLSTPTSLMVNVNEASGL--TQVNGQCDPTAMVTVHYTHNKSDV-------- 206
+ G+IQ+ + +L++++ +A L NG DP V + + V
Sbjct: 5 ITGEIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 207 -QKSKVKKKSHSPVFNESFMFDRSL-----GDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
+++K +KS +P +N++ ++ +E+ V +D N FLGEV I L++
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTV-WDYDRFSSNDFLGEVLIDLSS 123
Score = 35.6 bits (81), Expect = 0.002
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 5/100 (5%)
Query: 58 IRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGEEFQFDIPRRF----RHLAVYA 113
+++ + V +P + + + + L V
Sbjct: 43 VKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTV 102
Query: 114 YDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQ 153
+D DR S + LG+V I S + N W+PL T+
Sbjct: 103 WDYDRFSS-NDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE 141
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 40.9 bits (95), Expect = 2e-05
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 172 LMVNVNEASGLTQ-----VNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMF 226
V V A+ +T+ + DP V + + ++++ +PV+NE+F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDP--YVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 227 DRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
L ++L ++ LG +++
Sbjct: 63 ILDPNQENVLEITLMDANYVMDETLGTATFTVSS 96
Score = 35.8 bits (82), Expect = 0.001
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 98 FQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTPVTQDSEV 157
+ + + D LG T S + KE F V +E+
Sbjct: 63 ILDPNQENVLEITLMDANYVM----DETLGTATFTVSSMKVGEKKEVPFIFNQV---TEM 115
Query: 158 QGKIQIGVLST 168
++ + V S+
Sbjct: 116 VLEMSLEVASS 126
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 39.7 bits (92), Expect = 5e-05
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 166 LSTPTSLMVNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFM 225
L+ + L + V A P+ V V +K++ ++SP + +
Sbjct: 2 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQS---KKTEKCNNTNSPKWKQPLT 58
Query: 226 FDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
+ + V H +V LG + +
Sbjct: 59 VIVTPVSKLHFRV-WSHQTLKSDVLLGTAALDIYE 92
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 39.3 bits (91), Expect = 6e-05
Identities = 15/91 (16%), Positives = 29/91 (31%)
Query: 174 VNVNEASGLTQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSPVFNESFMFDRSLGDP 233
N E L + P V + + KK + P + +F G
Sbjct: 9 FNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV 68
Query: 234 IELVVSLHHDISGLNVFLGEVHIPLNNKETS 264
I++V+ + V +G + K+ +
Sbjct: 69 IQIVLMRAAEDPMSEVTVGVSVLAERCKKNN 99
Score = 32.8 bits (74), Expect = 0.015
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 8/78 (10%)
Query: 88 PVTSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFP 147
P P + F I + + ++ +G + E W
Sbjct: 49 PTMYPEWKSTFDAHIYEGRV-IQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLD 107
Query: 148 LTPVTQDSEVQGKIQIGV 165
L P Q K+ + V
Sbjct: 108 LQP-------QAKVLMCV 118
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 39.5 bits (91), Expect = 8e-05
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 172 LMVNVNEASGL-------------TQVNGQCDPTAMVTVHYTHNKSDVQKSKVKKKSHSP 218
L + + EA L DP + S + ++ K+K++SP
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIA----LNVDDSRIGQTATKQKTNSP 63
Query: 219 VFNESFMFDRSLGDPIELVVSLHHDISGLNVFLGEVHIPLNN 260
+++ F+ D G IEL V H G + F+ I
Sbjct: 64 AWHDEFVTDVCNGRKIELAV-FHDAPIGYDDFVANCTIQFEE 104
Score = 29.1 bits (64), Expect = 0.25
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 91 SPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNK--EHWFPL 148
SP + +EF D+ + + + D V TIQ +L + ++ E W L
Sbjct: 62 SPAWHDEFVTDVCNGRKIE-LAVFHDAPIGYDDFV-ANCTIQFEELLQNGSRHFEDWIDL 119
Query: 149 TPVTQDSEVQGKIQIGVLSTPTS 171
P +GK+ + + + +S
Sbjct: 120 EP-------EGKVYVIIDLSGSS 135
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 34.7 bits (79), Expect = 0.003
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 90 TSPFFGEEFQFDIPRRFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISN--KEHWFP 147
+ P + ++F F+I R L V +++ D ++G V I + + + W
Sbjct: 41 SQPSWEQDFMFEINRLDLGLTVEVWNKGLIW--DTMVGTVWIPLRTIRQSNEEGPGEWLT 98
Query: 148 LTP--VTQDSEVQGKIQIGVLSTPTSLMVNV 176
L + DSE+ G T ++++
Sbjct: 99 LDSQAIMADSEICGT----KDPTFHRILLDA 125
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 31.8 bits (71), Expect = 0.039
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 8/117 (6%)
Query: 37 YLQPRKRLTANQIIQDLGTLRIRIQYTADHILQPHYYEDLCTQILNSPSVNPVTSPFFGE 96
Y + L ++ + D +Q + + + E
Sbjct: 21 YDCQKAELFVT-RLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEE 76
Query: 97 EFQFDIPR---RFRHLAVYAYDRDRTSKTDRVLGKVTIQRSDLHRISNKEHWFPLTP 150
+ L + DR S+ V G++ + W L
Sbjct: 77 GLVLPLAEEELPTATLTLTLRTCDRFSR-HSVAGELRLGLDGTSVPLGAAQWGELKT 132
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 27.4 bits (61), Expect = 0.80
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 231 GDPIELVVSLHHDISGLNVFLGEVHIPLNNKETSSSWW 268
G P+ ++V L + G V PL ++ WW
Sbjct: 17 GGPVVVLVQLERE----EEVTGPVIAPLFPQKREEGWW 50
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus
chinensis) [TaxId: 4843]}
Length = 325
Score = 25.3 bits (54), Expect = 8.2
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 147 PLTPVTQDSEVQGKIQIGVLSTPTSLMVNVNEASGLTQVNG-QCDPTAMVTVHYTHNKS 204
P+T D E G++ IG + ++ + S + C Y N+S
Sbjct: 7 PMTDYGNDIEYYGQVTIG--TPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQS 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.398
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 952,171
Number of extensions: 41902
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 34
Length of query: 268
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,254,276
Effective search space: 230786784
Effective search space used: 230786784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)