Query psy3959
Match_columns 431
No_of_seqs 243 out of 1530
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:43:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 100.0 4.2E-68 1.4E-72 530.4 34.1 330 94-425 15-344 (345)
2 1fkm_A Protein (GYP1P), ORF YO 100.0 1.3E-64 4.6E-69 512.9 35.7 324 101-426 4-391 (396)
3 2qq8_A TBC1 domain family memb 100.0 1.8E-53 6.2E-58 422.6 23.8 279 102-414 18-309 (334)
4 3qye_A TBC1 domain family memb 100.0 7.1E-54 2.4E-58 425.3 14.3 275 100-414 25-308 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 1E-52 3.6E-57 413.2 19.2 263 104-414 4-275 (310)
6 4hl4_A TBC1 domain family memb 100.0 3.8E-51 1.3E-55 398.8 20.1 272 95-419 10-291 (292)
7 3qwl_A TBC1 domain family memb 100.0 2.8E-49 9.7E-54 383.6 15.4 269 103-424 24-293 (294)
8 2bpa_3 Protein (subunit of bac 34.8 23 0.00079 21.3 2.0 15 14-28 7-21 (37)
9 3tdu_A DCN1-like protein 1; E2 25.4 82 0.0028 27.8 4.9 93 288-393 72-164 (200)
10 1dxs_A P53-like transcription 25.1 62 0.0021 24.1 3.3 22 124-145 43-64 (80)
11 3kev_A Galieria sulfuraria DCU 21.7 1.6E+02 0.0055 25.8 6.0 99 281-393 67-165 (199)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=4.2e-68 Score=530.44 Aligned_cols=330 Identities=62% Similarity=1.084 Sum_probs=290.7
Q ss_pred CCCCChhhHHHHHHHHHHhccCCCCHHHHHHHHHCCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHcc
Q psy3959 94 NSKVNESESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYD 173 (431)
Q Consensus 94 ~~~~~~~e~~r~~k~~~ll~~~~~d~~~L~~l~~~GIP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~ 173 (431)
++++.++|..|.++|.++++++.+|.++||+++++|||+.+|+.||++|+|++|.+.++|...++++++.|..++++++.
T Consensus 15 ~~~~~~~e~~r~~kw~~~l~~~~~d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~ 94 (345)
T 2qfz_A 15 YFQGSEREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYD 94 (345)
T ss_dssp ---------CHHHHHHHHHHCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCcchhHHHHHHHHHHHcCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44567788899999999999988999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCchhHHHHHHHHHhcccCCcchhhhcchHHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCCccc
Q psy3959 174 TDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLE 253 (431)
Q Consensus 174 ~~~~~~~~~~~~qI~~Dv~Rt~p~~~~f~~~~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~~~~ 253 (431)
...++...+..+||++||+||+|+ ++|+++.+++.|+|||.+|+.+||++|||||||+|++||++++.+++++ +++.+
T Consensus 95 ~~~~~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~-~~~~~ 172 (345)
T 2qfz_A 95 SRNDEVHQDTYRQIHIDIPRMSPE-ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIE-AEEVD 172 (345)
T ss_dssp ------CHHHHHHHHHHGGGCSCH-HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC------
T ss_pred CCCccchHHHHHHHHHhCcccCCc-cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcc-ccccc
Confidence 665666678899999999999999 9999999999999999999999999999999999999999999887765 45677
Q ss_pred ccccCCCchhhhhhhHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHH
Q psy3959 254 QLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNN 333 (431)
Q Consensus 254 ~~~~~~~~~e~~~~iE~daF~~l~~ll~~~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~t 333 (431)
..|+..++.+..+.+|++|||||+++|++++++|.++++|++..+..++.++++++|+||+||.+.|+++..|+++||+|
T Consensus 173 ~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~ 252 (345)
T 2qfz_A 173 TVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNN 252 (345)
T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCChhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q psy3959 334 LLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRL 413 (431)
Q Consensus 334 lF~~~lp~~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~lp~~~~~~~di~~Ll~~A~~L 413 (431)
+|++++|++.++||||.|+++|.++..|++|+|+|+|..++++||++.|+++++.+|+++|+.+|+..|++.|+++|++|
T Consensus 253 lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l 332 (345)
T 2qfz_A 253 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRL 332 (345)
T ss_dssp TTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred HHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999877789999999999999999988999999999999999999999999999999999
Q ss_pred HHHhcccccccc
Q psy3959 414 KVAFADAPNHLS 425 (431)
Q Consensus 414 ~~~~~~a~~~~~ 425 (431)
+.+|.+||+|++
T Consensus 333 ~~~~~~~~~h~~ 344 (345)
T 2qfz_A 333 KFAFADAPNHYK 344 (345)
T ss_dssp HHHC--------
T ss_pred HHHHHhhHhhcc
Confidence 999999999995
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.3e-64 Score=512.89 Aligned_cols=324 Identities=46% Similarity=0.852 Sum_probs=291.2
Q ss_pred hHHHHHHHHHHhccCC-CCHHHHHHHHHCCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHccCCCCch
Q psy3959 101 ESSKIAKFNALLNLNL-LNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDET 179 (431)
Q Consensus 101 e~~r~~k~~~ll~~~~-~d~~~L~~l~~~GIP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~ 179 (431)
+.+|++||.++|+++. +|.++||+++++|||+.+|+.||++|+|++|.+.++|+..++++++.|..++++++.. ..+.
T Consensus 4 ~~~R~~kw~~lL~~~~~~d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~-~~~~ 82 (396)
T 1fkm_A 4 IIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSD-QHSR 82 (396)
T ss_dssp HHHHHHHHHHHHSSCSBCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSS-SCST
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc-cCcc
Confidence 4689999999999987 9999999999999999999999999999999999999999999999999999998763 3345
Q ss_pred hHHHHHHHHHhcccCCcchhhhcchHHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCC--Cccccccc
Q psy3959 180 YQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVG--TDLEQLDL 257 (431)
Q Consensus 180 ~~~~~~qI~~Dv~Rt~p~~~~f~~~~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~--~~~~~~~~ 257 (431)
+.+..+||++||+||+|++++|+.+.+++.|+|||.+|+.+||++|||||||+|++||++++..++++.. ++.+..+.
T Consensus 83 ~~~~~~qI~~Dv~RT~p~~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~ 162 (396)
T 1fkm_A 83 DIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDP 162 (396)
T ss_dssp HHHHHHHHHHHGGGSSTTSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCG
T ss_pred cHHHHHHHHHHhhhhCCCcccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccch
Confidence 6778899999999999999999999999999999999999999999999999999999999987765421 23334444
Q ss_pred CC-CchhhhhhhHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHHHhc
Q psy3959 258 ST-LPKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLT 336 (431)
Q Consensus 258 ~~-~~~e~~~~iE~daF~~l~~ll~~~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~tlF~ 336 (431)
.+ ++.+....+|++|||||++||++++++|.++++|++..+..++.+|++++|+||+||++.|+++.+|+++||+++|+
T Consensus 163 ~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~ 242 (396)
T 1fkm_A 163 STYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLM 242 (396)
T ss_dssp GGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTG
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 44 77788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHHhcCC---------------------------------------------------C---------
Q psy3959 337 REVPLRCSIRLWDTYLAES---------------------------------------------------D--------- 356 (431)
Q Consensus 337 ~~lp~~~~lRlWD~~l~eg---------------------------------------------------~--------- 356 (431)
+++|++.++||||.||++| .
T Consensus 243 ~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (396)
T 1fkm_A 243 REFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQS 322 (396)
T ss_dssp GGSCHHHHHHHHHHHHHHHC------------------------------------------------------------
T ss_pred hhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcccc
Confidence 9999999999999999998 2
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHhccccccccc
Q psy3959 357 DFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHLSG 426 (431)
Q Consensus 357 ~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~lp~~~~~~~di~~Ll~~A~~L~~~~~~a~~~~~~ 426 (431)
++..|++|+|+|+|..+|++|++ .||++++++|+++|+.+|++.|++.|+++|+.++..|++||+|---
T Consensus 323 ~~~~~~~~v~~AlL~~~r~~Ll~-~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~~~~~ 391 (396)
T 1fkm_A 323 SLNEFHVFVCAAFLIKWSDQLME-MDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATSHWLH 391 (396)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHTT-CCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC--------
T ss_pred chHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHHHHhh
Confidence 44569999999999999999994 8999999999999999999999999999999999999999999754
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-53 Score=422.60 Aligned_cols=279 Identities=21% Similarity=0.381 Sum_probs=239.1
Q ss_pred HHHHHHHH-HHhcc--CCCCHHHHHHHHHCCCCCCcHHHHHHHhhCC-CCCChHHHHHHHHHHHHHHHHHHHHHccCCCC
Q psy3959 102 SSKIAKFN-ALLNL--NLLNLEELRSLAWSGIPNQVRPDAWRLLAGY-LPTSSERRQQVLERKRTEYWVFVKQYYDTDRD 177 (431)
Q Consensus 102 ~~r~~k~~-~ll~~--~~~d~~~L~~l~~~GIP~~~R~~vW~~Llg~-lp~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~ 177 (431)
.+|..+|. .++.+ ...+.++||+++++|||+.+|+.||++|+|+ ++.+.+.+...+++.+..|..+.........+
T Consensus 18 ~~~~~~W~~~il~~w~~~~~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~ 97 (334)
T 2qq8_A 18 GNAVLTWNNEILPNWETMWCSRKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENE 97 (334)
T ss_dssp SCHHHHHHHTTGGGCC--CCCHHHHHHHHTCCCHHHHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHhHHhccChHHHHHHHHCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhccccccCccc
Confidence 35778998 58876 3468899999999999999999999999998 56677878888888888888776554221111
Q ss_pred c------hhHHHHHHHHHhcccCCcchhhhcch-HHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCC
Q psy3959 178 E------TYQDIYRQIHIDIPRMSPLMMLFQQK-LVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGT 250 (431)
Q Consensus 178 ~------~~~~~~~qI~~Dv~Rt~p~~~~f~~~-~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~ 250 (431)
+ ...+..+||++||+||+|++++|+.. .+++.|+|||.+|+.+||++|||||||+|+|+|++++.
T Consensus 98 d~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~-------- 169 (334)
T 2qq8_A 98 DAGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLD-------- 169 (334)
T ss_dssp ---------CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSC--------
T ss_pred ccccccccchhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCC--------
Confidence 1 11356799999999999999999864 57899999999999999999999999999999987653
Q ss_pred cccccccCCCchhhhhhhHHHHHHHHHHHHhhh--hhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhh
Q psy3959 251 DLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGI--QDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSF 328 (431)
Q Consensus 251 ~~~~~~~~~~~~e~~~~iE~daF~~l~~ll~~~--~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~ 328 (431)
|++|||||++||+++ +++|..+.++++..+..++.+++.++|+||+||.+.|+++..|++
T Consensus 170 ------------------E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~ 231 (334)
T 2qq8_A 170 ------------------TADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLI 231 (334)
T ss_dssp ------------------HHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHH
T ss_pred ------------------HHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHH
Confidence 999999999999986 688998999999999999999999999999999999999999999
Q ss_pred hHHHHHhccCCChhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCCCCCCCcccHHHHHH
Q psy3959 329 RWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVA 408 (431)
Q Consensus 329 ~W~~tlF~~~lp~~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~lp~~~~~~~di~~Ll~ 408 (431)
+||+|+|++++|++.++||||+|+++|.. |++++|+|+|..++++|++ .|+++++.+|+++|.. .|++.|++
T Consensus 232 ~W~ltlF~~~lp~~~~lriWD~~l~eg~~---~l~~valaiL~~~~~~Ll~-~d~~~il~~L~~lp~~----~d~~~l~~ 303 (334)
T 2qq8_A 232 DWIFTLYSKSLPLDLACRIWDVFCRDGEE---FLFRTALGILKLFEDILTK-MDFIHMAQFLTRLPED----LPAEELFA 303 (334)
T ss_dssp HHHHTTTTTTSCHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHTHHHHHT-CCHHHHHHHHHSCCTT----CCHHHHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHhCCCc----CCHHHHHH
Confidence 99999999999999999999999999975 8899999999999999995 7999999999999984 48999999
Q ss_pred HHHHHH
Q psy3959 409 EAYRLK 414 (431)
Q Consensus 409 ~A~~L~ 414 (431)
.|..++
T Consensus 304 ~a~~l~ 309 (334)
T 2qq8_A 304 SIATIQ 309 (334)
T ss_dssp HHHHCC
T ss_pred HHHHcc
Confidence 999986
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=7.1e-54 Score=425.32 Aligned_cols=275 Identities=17% Similarity=0.305 Sum_probs=240.1
Q ss_pred hhHHHHHHHHHHhccC-----CCCHHHHHHHHHCCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHccC
Q psy3959 100 SESSKIAKFNALLNLN-----LLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDT 174 (431)
Q Consensus 100 ~e~~r~~k~~~ll~~~-----~~d~~~L~~l~~~GIP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~~ 174 (431)
...++.++|.++++.+ ..+.++|++++++|||+.+|+.||+.|+|+.+.. +.+......+++.|..+.++..
T Consensus 25 ~~~e~~~~W~~~l~~~~~~~~~~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~-~~~~~~~~~~~~~Y~~l~~~~~-- 101 (331)
T 3qye_A 25 CLKEVTTVWEKMLSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLK-HQFPSKQQPKDVPYKELLKQLT-- 101 (331)
T ss_dssp CCHHHHHHHHHHHTCTTGGGCCCCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHH-CCCCSSSCCCCCCHHHHTTSCC--
T ss_pred ccHHHHHHHHHHhccCCCCcccCCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhh-hcchhhhhhchHHHHHHHHhcC--
Confidence 3445788999999764 4688999999999999999999999999973210 0000011224467888776532
Q ss_pred CCCchhHHHHHHHHHhcccCCcchhhhcch--HHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCCcc
Q psy3959 175 DRDETYQDIYRQIHIDIPRMSPLMMLFQQK--LVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDL 252 (431)
Q Consensus 175 ~~~~~~~~~~~qI~~Dv~Rt~p~~~~f~~~--~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~~~ 252 (431)
...++|++||+||+|++++|+.+ .+++.|+|||.+|+.+||++|||||||+|+++|++++.
T Consensus 102 -------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~---------- 164 (331)
T 3qye_A 102 -------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS---------- 164 (331)
T ss_dssp -------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC----------
T ss_pred -------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh----------
Confidence 23489999999999999999876 78999999999999999999999999999999987653
Q ss_pred cccccCCCchhhhhhhHHHHHHHHHHHHhh--hhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhH
Q psy3959 253 EQLDLSTLPKEQRDIIEADSFCCLSKFLDG--IQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRW 330 (431)
Q Consensus 253 ~~~~~~~~~~e~~~~iE~daF~~l~~ll~~--~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W 330 (431)
|++|||||+++|+. ++++|.+++++++..+..++.+++.++|+||+||.+.|+++..|+++|
T Consensus 165 ----------------E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W 228 (331)
T 3qye_A 165 ----------------EEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPW 228 (331)
T ss_dssp ----------------HHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 99999999999987 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCChhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q psy3959 331 MNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEA 410 (431)
Q Consensus 331 ~~tlF~~~lp~~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~lp~~~~~~~di~~Ll~~A 410 (431)
|+|+|++++|++.++||||.|+++|.. +++++|+|+|..++++|++..|+++++.+|++.++ +|+..|++.++++|
T Consensus 229 ~l~lF~~~lp~~~~lrlwD~~l~~g~~---~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p-~~~~~di~~li~~A 304 (331)
T 3qye_A 229 FLTMFASQFPLGFVARVFDMIFLQGTE---VIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP-NLGLVQMEKTINQV 304 (331)
T ss_dssp HHSTTTTTSCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT-CCCHHHHHHHHHHH
T ss_pred HHHHhhhhCCHHHHHHHHHHHHHCCcH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC-CCCHHHHHHHHHHH
Confidence 999999999999999999999999987 88999999999999999987899999999998554 37788999999999
Q ss_pred HHHH
Q psy3959 411 YRLK 414 (431)
Q Consensus 411 ~~L~ 414 (431)
+.++
T Consensus 305 ~~l~ 308 (331)
T 3qye_A 305 FEMD 308 (331)
T ss_dssp HHCC
T ss_pred HhCC
Confidence 9885
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-52 Score=413.25 Aligned_cols=263 Identities=24% Similarity=0.383 Sum_probs=234.2
Q ss_pred HHHHHHHHhccC----CCCHHHHHHHHHCCCCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHccCCCCch
Q psy3959 104 KIAKFNALLNLN----LLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDET 179 (431)
Q Consensus 104 r~~k~~~ll~~~----~~d~~~L~~l~~~GIP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~ 179 (431)
.+++|.++++++ ..+.++|++++++|||+.+|+.||+.|+|+.+. ....+.|..+.++.
T Consensus 4 ~~~~W~~~~~~w~~~~~~~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~~-------- 66 (310)
T 3hzj_A 4 ILYSWGELLGKWHSNLGARPKGLSTLVKSGVPEALRAEVWQLLAGCHDN---------QAMLDRYRILITKD-------- 66 (310)
T ss_dssp --CCHHHHHHHHHTSTTSCCTTHHHHHHHCCCGGGHHHHHHHHTTCCCC---------HHHHHHHHHHTTSC--------
T ss_pred HHHHHHHHHHHHhhhcccCHHHHHHHHHCCCCHHHHHHHHHHHHCCCcc---------hhHHHHHHHHHhcc--------
Confidence 356788888763 235699999999999999999999999998653 12345777765431
Q ss_pred hHHHHHHHHHhcccCCcchhhhcch--HHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCCccccccc
Q psy3959 180 YQDIYRQIHIDIPRMSPLMMLFQQK--LVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDL 257 (431)
Q Consensus 180 ~~~~~~qI~~Dv~Rt~p~~~~f~~~--~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~~~~~~~~ 257 (431)
.+..++|++||+||+|++++|+.+ .+++.|+|||.+|+.+||++|||||||+|+++|++++.
T Consensus 67 -~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~--------------- 130 (310)
T 3hzj_A 67 -SAQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMP--------------- 130 (310)
T ss_dssp -CTTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSC---------------
T ss_pred -CCcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCC---------------
Confidence 123589999999999999999865 68999999999999999999999999999999998763
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhh--hhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHHHh
Q psy3959 258 STLPKEQRDIIEADSFCCLSKFLDG--IQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLL 335 (431)
Q Consensus 258 ~~~~~e~~~~iE~daF~~l~~ll~~--~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~tlF 335 (431)
|++|||||+++|.. ++++|.++.++++..+..++.+++.++|+||+||.+.|+++..|+++||+|+|
T Consensus 131 -----------e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF 199 (310)
T 3hzj_A 131 -----------EEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLF 199 (310)
T ss_dssp -----------HHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTT
T ss_pred -----------HHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 99999999999987 68999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHh-CCCCCCCCcccHHHHHHHHHHHH
Q psy3959 336 TREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQ-NLPTSNWSDHDIGVLVAEAYRLK 414 (431)
Q Consensus 336 ~~~lp~~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~-~lp~~~~~~~di~~Ll~~A~~L~ 414 (431)
++++|++.++||||.|+++|.. +++++|+|+|..++++|++ .|+++++.+|+ ++|...+...|++.|++.|+.++
T Consensus 200 ~~~lp~~~~~riwD~~l~~g~~---~l~~v~lail~~~~~~Ll~-~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~ 275 (310)
T 3hzj_A 200 TAKFPLCMVFHIIDLLLCEGLN---IIFHVALALLKTSKEDLLQ-ADFEGALKFFRVQLPKRYRAEENARRLMEQACNIK 275 (310)
T ss_dssp TTTSCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTHHHHHT-CCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred hccCCHHHHHHHHHHHHHCCcH---HHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHhCcccccccccHHHHHHHHHhcC
Confidence 9999999999999999999987 7899999999999999996 59999999997 57877777889999999999985
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=3.8e-51 Score=398.81 Aligned_cols=272 Identities=22% Similarity=0.312 Sum_probs=237.9
Q ss_pred CCCChhhHHHHHHHHHHhccCCCCHHHHHHHHHCC---CCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy3959 95 SKVNESESSKIAKFNALLNLNLLNLEELRSLAWSG---IPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQY 171 (431)
Q Consensus 95 ~~~~~~e~~r~~k~~~ll~~~~~d~~~L~~l~~~G---IP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~ 171 (431)
+.++..+..|.+++.++|+.+.+|+++||++++.| +|+++|+.||+.|+|+.+...+. .|...
T Consensus 10 ~~~~~~~~~k~~~i~~~l~~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~----------~~~~~---- 75 (292)
T 4hl4_A 10 ADFNAKRKKKVAEIHQALNSDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP----------ISGKN---- 75 (292)
T ss_dssp --CHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS----------CCCTT----
T ss_pred CCccchhHHHHHHHHHHHcCCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC----------chhhh----
Confidence 55667888899999999999999999999999853 89999999999999997764321 11110
Q ss_pred ccCCCCchhHHHHHHHHHhcccCCcchhhhcc----hHHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCC
Q psy3959 172 YDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQ----KLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLP 247 (431)
Q Consensus 172 ~~~~~~~~~~~~~~qI~~Dv~Rt~p~~~~f~~----~~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~ 247 (431)
.....+..+||++||+||+|.++.|.. ...++.|.|||.+|+.+||++|||||||+|+++|++++.
T Consensus 76 -----~~~~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~----- 145 (292)
T 4hl4_A 76 -----LRQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG----- 145 (292)
T ss_dssp -----HHHHCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC-----
T ss_pred -----hcccchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC-----
Confidence 112345679999999999999988753 457889999999999999999999999999999998764
Q ss_pred CCCcccccccCCCchhhhhhhHHHHHHHHHHHHhh-hhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchh
Q psy3959 248 VGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDG-IQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQF 326 (431)
Q Consensus 248 ~~~~~~~~~~~~~~~e~~~~iE~daF~~l~~ll~~-~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f 326 (431)
|++|||||+++|+. ++++|.++.++++..+..++.+++.++|+||+||.+.++. ..|
T Consensus 146 ---------------------e~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i~-~~~ 203 (292)
T 4hl4_A 146 ---------------------ERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVG-TIF 203 (292)
T ss_dssp ---------------------HHHHHHHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCCC-SGG
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCC-cch
Confidence 99999999999986 5889999999999999999999999999999999999995 689
Q ss_pred hhhHHHHHhccCCC-hhhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHhCCCCCCCCcccHH
Q psy3959 327 SFRWMNNLLTREVP-LRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRE-RDFQGLMLMLQNLPTSNWSDHDIG 404 (431)
Q Consensus 327 ~~~W~~tlF~~~lp-~~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~-~d~~~ll~~L~~lp~~~~~~~di~ 404 (431)
+++||+|+|++++| ++.++||||.|+++|.. +++|+|+|++..++++|++. .|++.++.+|+++|. +.|++
T Consensus 204 ~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~---~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~----~~d~~ 276 (292)
T 4hl4_A 204 ALSWLITWFGHVLSDFRHVVRLYDFFLACHPL---MPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQ----DLPYE 276 (292)
T ss_dssp GHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTT---HHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCS----SCCHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCC----CCCHH
Confidence 99999999999996 99999999999999987 88999999999999999986 589999999999995 34899
Q ss_pred HHHHHHHHHHHHhcc
Q psy3959 405 VLVAEAYRLKVAFAD 419 (431)
Q Consensus 405 ~Ll~~A~~L~~~~~~ 419 (431)
.|++.|..|...+|+
T Consensus 277 ~li~~A~~l~~~~pp 291 (292)
T 4hl4_A 277 TLISRAGDLFVQFPP 291 (292)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999999986
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.8e-49 Score=383.62 Aligned_cols=269 Identities=16% Similarity=0.242 Sum_probs=226.1
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHCC-CCCCcHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHccCCCCchhH
Q psy3959 103 SKIAKFNALLNLNLLNLEELRSLAWSG-IPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQ 181 (431)
Q Consensus 103 ~r~~k~~~ll~~~~~d~~~L~~l~~~G-IP~~~R~~vW~~Llg~lp~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~ 181 (431)
+...++..+|+++.+|+++|++++|+| ||+.+|+.||++|+||+|++.++|+.++++++++|..++++ .
T Consensus 24 ~~k~~~~~ll~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~----------~ 93 (294)
T 3qwl_A 24 EEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA----------L 93 (294)
T ss_dssp HHHHHHHHHTTSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH----------H
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh----------h
Confidence 334678889999999999999999998 99999999999999999999999999999999999999998 3
Q ss_pred HHHHHHHHhcccCCcchhhhcchHHHHHHHHHHHHHHHhCCCCCCCCChhHHHHHHHHHHhhccCCCCCcccccccCCCc
Q psy3959 182 DIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLP 261 (431)
Q Consensus 182 ~~~~qI~~Dv~Rt~p~~~~f~~~~~~~~L~rIL~~~a~~~p~igY~QGm~~iva~ll~v~~~~~~~~~~~~~~~~~~~~~ 261 (431)
++.+||+.+. |-...|...-..+. ......+. .+++ .++|||..|+++++.++.+
T Consensus 94 ~~~r~I~~~t----P~~~vfl~~~~~~~-~~l~~~~~-~~~~-~~~~~~~~Iaa~ll~l~~~------------------ 148 (294)
T 3qwl_A 94 KVVRFVSDAT----PQAEVYLRMYQLES-GKLPRSPS-FPLE-PDDEVFLAIAKAMEEMVED------------------ 148 (294)
T ss_dssp HHTTSCCTTS----CHHHHHHHHHHHHH-TCCCSSTT-SCCC-HHHHHHHHHHHHHHHHCCS------------------
T ss_pred hhhhhhhccC----chHHHHHHHHHccc-cccccccc-CCcc-cchhhHHHHHHHHHHHhCC------------------
Confidence 4456666533 32222211111000 00111111 1222 2459999999999987665
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHHHhccCCCh
Q psy3959 262 KEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPL 341 (431)
Q Consensus 262 ~e~~~~iE~daF~~l~~ll~~~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~tlF~~~lp~ 341 (431)
|+||||||++||++++++|.++++|++..+ +++++.++|+||+||++.|+.+..++.+||+++|++++|+
T Consensus 149 -------E~dAFW~f~~Lm~~l~~~f~~~~~gl~~~l---~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~ 218 (294)
T 3qwl_A 149 -------SVDCYWITRRFVNQLNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPE 218 (294)
T ss_dssp -------HHHHHHHHHHHHHHHHTTTTTTGGGHHHHH---HHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCH
T ss_pred -------HHHHHHHHHHHHHHHHHhhCCChhHHHHHH---HHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCH
Confidence 999999999999999999999999998754 8899999999999999999988777779999999999999
Q ss_pred hhHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHhcccc
Q psy3959 342 RCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAP 421 (431)
Q Consensus 342 ~~~lRlWD~~l~eg~~~~~fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~lp~~~~~~~di~~Ll~~A~~L~~~~~~a~ 421 (431)
+.++||||+|+++|.. |++++|+|+|..++++|++.+++++++.+|+++|+. |++.++++|+.|+..++++|
T Consensus 219 ~~vlRlWD~~~~~~~~---~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~-----di~~ll~~A~~l~~~~~~~~ 290 (294)
T 3qwl_A 219 SSLQRVWDKVVSGSCK---ILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQD-----SSDAIVSKAIDLWHKHCGTP 290 (294)
T ss_dssp HHHHHHHHHHHTTCST---HHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCST-----THHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhCCch---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcc-----cHHHHHHHHHHHHHHcCCCC
Confidence 9999999999998876 889999999999999999877779999999999986 79999999999999999999
Q ss_pred ccc
Q psy3959 422 NHL 424 (431)
Q Consensus 422 ~~~ 424 (431)
.|.
T Consensus 291 ~~~ 293 (294)
T 3qwl_A 291 VHS 293 (294)
T ss_dssp CCC
T ss_pred ccc
Confidence 996
No 8
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=34.78 E-value=23 Score=21.33 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCC
Q psy3959 14 SHNVPGRPSPKKSVF 28 (431)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (431)
+..-||+++|..|-+
T Consensus 7 sgarpgrpqplrgtk 21 (37)
T 2bpa_3 7 SGARPGRPQPLRGTK 21 (37)
T ss_dssp CCCCCSCCCCBCCSC
T ss_pred CCCCCCCCccccccc
Confidence 368899999998754
No 9
>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_A 4gao_A*
Probab=25.42 E-value=82 Score=27.77 Aligned_cols=93 Identities=15% Similarity=0.289 Sum_probs=52.4
Q ss_pred ccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHHHhccCCChhhHHHHHHHHhcCCCCchhHHHHHHH
Q psy3959 288 IFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCA 367 (431)
Q Consensus 288 ~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~tlF~~~lp~~~~lRlWD~~l~eg~~~~~fl~~v~~ 367 (431)
+.+...++..+..+..-| .+|..++.+- .|+|.+-..--.+.++++.++..|+.+|....++ +--=+
T Consensus 72 ~dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~r~~gqk~L~~e~Ai~~W~lll~~~~~~----l~~W~ 138 (200)
T 3tdu_A 72 CDSIEKLKAQIPKMEQEL--KEPGRFKDFY-------QFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFKF----LDLWN 138 (200)
T ss_dssp CSSHHHHHHTHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSEEHHHHHHHHHHHSTTSCTT----HHHHH
T ss_pred cccHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCcCCHHHHHHHHHHHcCCCchH----HHHHH
Confidence 344455555555555544 3665555543 3677766655567899999999999999865432 22333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHhCC
Q psy3959 368 AFLLHWRQKLLRERDFQGLMLMLQNL 393 (431)
Q Consensus 368 AiL~~~r~~Ll~~~d~~~ll~~L~~l 393 (431)
.+|.....+-+....=..++.|.+..
T Consensus 139 ~FL~~~~~k~IskD~W~~~l~F~~~i 164 (200)
T 3tdu_A 139 KFLLEHHKRSIPKDTWNLLLDFSTMI 164 (200)
T ss_dssp HHHHHTTCCEECHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcCcCHhHHHHHHHHHHHh
Confidence 34433222222222335566666543
No 10
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=25.14 E-value=62 Score=24.07 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.2
Q ss_pred HHHHCCCCCCcHHHHHHHhhCC
Q psy3959 124 SLAWSGIPNQVRPDAWRLLAGY 145 (431)
Q Consensus 124 ~l~~~GIP~~~R~~vW~~Llg~ 145 (431)
.+..-.||.+.|..+|+-+..+
T Consensus 43 dL~~mkIpe~~R~kIWk~l~e~ 64 (80)
T 1dxs_A 43 DLGALKIPEQYRMTIWRGLQDL 64 (80)
T ss_dssp HHHHTTCCTTTHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHhhHHHh
Confidence 3456789999999999988765
No 11
>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin, neddylation, DCN-1, center for eukaryotic structural genomics, PSI; HET: CSO MSE; 1.30A {Galdieria sulphuraria}
Probab=21.69 E-value=1.6e+02 Score=25.83 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=54.9
Q ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHhcHHHHHHHHHcCCCcchhhhhHHHHHhccCCChhhHHHHHHHHhcCCCCchh
Q psy3959 281 DGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAA 360 (431)
Q Consensus 281 ~~~~~~f~~~~~~i~~~~~~l~~ll~~~dp~L~~hL~~~~v~~~~f~~~W~~tlF~~~lp~~~~lRlWD~~l~eg~~~~~ 360 (431)
+++...-+.+..+++..+..+..-+ .+|..++.+- .|+|.+-..--.+.++++.++..|+.+|....++
T Consensus 67 ~G~~~l~~dsi~~lk~~l~~l~~~l--~d~~~Fk~~Y-------~ftF~~~re~gqk~L~~e~Ai~~W~lll~~~~~~-- 135 (199)
T 3kev_A 67 EGLANLQVDSLEKLKRKLSSLRKEI--EDPSKFRAFY-------QFVFQYSKEPSQRSLPAETAMALWDVLLRGRFSL-- 135 (199)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHT--TSHHHHHHHH-------HHHHHHHSCTTCSSBCHHHHHHHHHHHHTTTCTT--
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHc--cCHHHHHHHH-------HHHHHHHcCcCcCCCCHHHHHHHHHHHhCCccHH--
Confidence 3333333445556666665555544 4666555543 3677766655568899999999999999654331
Q ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHhCC
Q psy3959 361 FQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNL 393 (431)
Q Consensus 361 fl~~v~~AiL~~~r~~Ll~~~d~~~ll~~L~~l 393 (431)
+--=+.+|.... +-+....=..++.|.+..
T Consensus 136 --l~~W~~FL~~~~-k~IskD~W~~~l~F~~~i 165 (199)
T 3kev_A 136 --LDSWLEFLKNNT-HSISRDTWNLLYDFSQLS 165 (199)
T ss_dssp --HHHHHHHGGGCC-SCBCHHHHHHHHHHHTC-
T ss_pred --HHHHHHHHHhcC-CCcCHHHHHHHHHHHHHh
Confidence 222333343222 222223335566777654
Done!