RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3959
(431 letters)
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p. Probable
Rab-GAPs. Widespread domain present in Gyp6 and Gyp7,
thereby giving rise to the notion that it performs a
GTP-activator activity on Rab-like GTPases.
Length = 216
Score = 156 bits (396), Expect = 2e-45
Identities = 71/255 (27%), Positives = 101/255 (39%), Gaps = 43/255 (16%)
Query: 127 WSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQ 186
G+P +R W+LL P + Y +K+ D + I Q
Sbjct: 2 RKGVPPSLRGVVWKLLLNAQP-------MDTSADKDLYSRLLKETAPDD-----KSIVHQ 49
Query: 187 IHIDIPRMSPLMMLFQQK--LVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQE 244
I D+ R P FQ K QE R+L +A+ +P GY QG+N L P +V E
Sbjct: 50 IEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDE 109
Query: 245 FLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLDGIQDN-YIFAQLGIQQKVNQLKD 303
D+F CL K ++ N Y+ G+Q + QL
Sbjct: 110 -------------------------EDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDR 144
Query: 304 LIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQL 363
L++ D +L+ HL G+ ++ RW L RE+PL +R+WD AE D F
Sbjct: 145 LVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSD---FLF 201
Query: 364 YVCAAFLLHWRQKLL 378
V A L R LL
Sbjct: 202 RVALALLKLHRDVLL 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain. Identification of a
TBC domain in GYP6_YEAST and GYP7_YEAST, which are
GTPase activator proteins of yeast Ypt6 and Ypt7,
implies that these domains are GTPase activator proteins
of Rab-like small GTPases.
Length = 206
Score = 150 bits (382), Expect = 2e-43
Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 43/248 (17%)
Query: 132 NQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDI 191
+ +R + W+LL G L S +R Y QI D+
Sbjct: 1 DSLRGEVWKLLLGNLSESKQRDS--------------VSQYSKLLKLEDSPDEEQIEKDV 46
Query: 192 PRMSPLMMLFQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTD 251
PR P F+ Q+ RIL ++I +P GY QG+N + P +V L
Sbjct: 47 PRTFPHHFFFKNGEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLD-------- 98
Query: 252 LEQLDLSTLPKEQRDIIEADSFCCLSKFLD-GIQDNYIFAQLGIQQKVNQLKDLIQRIDT 310
E ++F C L+ ++D ++ + G+Q+ + ++L+++ D
Sbjct: 99 -----------------EEEAFWCFVSLLEYLLRDFFLPSFPGLQRDLYVFEELLKKHDP 141
Query: 311 NLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFL 370
L+ HL K G+D F+ +W L RE+PL +RLWD +L F V A L
Sbjct: 142 ELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLRLWDLFLEGGKFFL---FRVALAIL 198
Query: 371 LHWRQKLL 378
+R++LL
Sbjct: 199 KRFRKELL 206
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 141 bits (356), Expect = 5e-37
Identities = 89/388 (22%), Positives = 141/388 (36%), Gaps = 61/388 (15%)
Query: 37 NSSFQAYQASISDAWVIDDDEFCSPNVNISKKVAQSAALNVINNHKTKQFETSSSSRNSK 96
+ + +A + D + + +K + K
Sbjct: 124 KRLKDSLPTHLPEASSTEKDFSSFKGSSSLNSNPE--------LNKEINELSLKEEP-QK 174
Query: 97 VNESESSKIAKFNALLNLN-----LLNLEELRSLAWSGIPNQVRPDAWRLLAGYLP--TS 149
+ E + + + L+ N + L +LR L GIPN++R D W L G
Sbjct: 175 LRYYELAADKLWISYLDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDK 234
Query: 150 SERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLV--Q 207
+ + L + Q+I QI D+ R P LFQ ++
Sbjct: 235 NPGLYERLLN------------LHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEISIRA 282
Query: 208 EMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDI 267
E R+L +++ +P GYVQG+N L P +V
Sbjct: 283 ENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLE------------------------- 317
Query: 268 IEADSFCCLSKFLD--GIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQ 325
E +F CL K L G+ ++ G+ + + L DL++ +D L+ HLL+ GV L
Sbjct: 318 SEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLM 377
Query: 326 FSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRER-DFQ 384
F+FRW L RE PL ++R+WD E FQL + LL R KLL+ D
Sbjct: 378 FAFRWFLTLFVREFPLEYALRIWDCLFLEGSSM-LFQLALAILKLL--RDKLLKLDSDEL 434
Query: 385 GLMLMLQNLPTSNWSDHDIGVLVAEAYR 412
+L+ Q S +
Sbjct: 435 LDLLLKQLFLHSGKEAWSSILKFRHGTD 462
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 32.0 bits (72), Expect = 0.80
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 131 PNQVRPDAWRLLAGY---LPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQD 182
P ++R R LA Y LP+ ++ E +R +Y QY D + D QD
Sbjct: 609 PKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGD-QYNDDEIDAMQQD 662
>gnl|CDD|182684 PRK10734, PRK10734, putative calcium/sodium:proton antiporter;
Provisional.
Length = 325
Score = 30.8 bits (70), Expect = 1.5
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 308 IDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLR------CSIRLWDTYLAESDDFAAF 361
+ +N+ N LL G+ L F +++L RE+PL L+D L+ SD F
Sbjct: 74 LGSNITNILLILGLAALIRPFTVHSDVLRRELPLMLLVSVLAGSVLYDGQLSRSD--GIF 131
Query: 362 QLYVCAAFLL 371
L + +LL
Sbjct: 132 LLLLAVLWLL 141
>gnl|CDD|165303 PHA03002, PHA03002, Hypothetical protein; Provisional.
Length = 679
Score = 29.7 bits (67), Expect = 3.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 297 KVNQLKDLIQR---IDTNLHNHLLKHGVDYLQFSFRWM-----NNLLTRE 338
+V L L+Q IDT L+N +L H + + NNLLT +
Sbjct: 69 RVTDLIKLLQNSSRIDTKLYNAVLVHRKSLIVSGINVIKLMIENNLLTID 118
>gnl|CDD|113683 pfam04919, DUF655, Protein of unknown function, DUF655. This
family includes several uncharacterized archaeal
proteins.
Length = 181
Score = 28.9 bits (65), Expect = 3.5
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 237 FFVVFLQEFLPVGTDLEQLDLSTLP----KEQRDIIEA------DSFCCLSKFLDGIQD 285
FV F E P+ T L QL+L LP K I+E +SF + + + G+ D
Sbjct: 100 RFVDFFNEAEPITTRLHQLEL--LPGIGKKMMWAILEERKKKPFESFEDIKERVKGLHD 156
>gnl|CDD|212003 TIGR04280, geopep_mat_rSAM, putative geopeptide radical SAM
maturase. This family is the radical SAM/SPASM domain
putative peptide maturase for geopeptide, described by
model TIGR04229. The SPASM domain (see model TIGR04085)
frequently marks peptide-modifying radical SAM enzymes.
Length = 428
Score = 28.9 bits (65), Expect = 5.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 302 KDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNN--LLTREV 339
DLI+RI T L G+ FSF + N LLTR+V
Sbjct: 148 LDLIRRIATPLKAAAASRGL---SFSFSLVTNGTLLTRDV 184
>gnl|CDD|202278 pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of
septum formation in eukaryotes, bacteria, and archaea.
Length = 193
Score = 28.4 bits (64), Expect = 5.4
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 145 YLPTSSERRQQVLERKRTEYWVFV------KQYYDTDRDETYQDIYRQ 186
L ++S RR+++LE + V V Y D E D+ +
Sbjct: 4 ILASTSPRRKELLEDLGIPFEVIVSYFDEESVLYSLDPREYVVDLACE 51
>gnl|CDD|180871 PRK07191, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 456
Score = 29.0 bits (65), Expect = 6.1
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 113 NLNLLNLEELRSLAW--SGIPNQVRPDAWRLLAGYLPTSSERRQQVLE-----RKR-TEY 164
N NL L E+RS G+ N DA L GY+ +S + LE R + Y
Sbjct: 353 NSNLFELLEIRSQKTDLPGMGNVSLGDAATALVGYIAITSNQNHSELENAENVRNQAERY 412
Query: 165 WVFVKQYYDTDRDET------YQDIY 184
W + + + DE YQ Y
Sbjct: 413 W---ESFSGVNNDEEAMNLMEYQRAY 435
>gnl|CDD|217667 pfam03666, NPR3, Nitrogen Permease regulator of amino acid
transport activity 3. This family, also known in yeasts
as Rmd11, complexes with NPR2, pfam06218. This complex
heterodimer is responsible for inactivating TORC1. an
evolutionarily conserved protein complex that controls
cell size via nutritional input signals, specifically,
in response to amino acid starvation.
Length = 424
Score = 28.5 bits (64), Expect = 7.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 350 TYLAESDDFAAFQLYVCAAFLLHWRQ 375
LA+S Q++ A L++WR+
Sbjct: 300 LQLAQSSGLPLSQVFSLALHLIYWRR 325
>gnl|CDD|185150 PRK15235, PRK15235, outer membrane fimbrial usher protein SefC;
Provisional.
Length = 814
Score = 28.2 bits (62), Expect = 9.9
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 212 RILFIWAIRHPASGYVQGINDLVTPF---FVVFLQEFLPVGTDLEQLDLSTLPKE 263
++L + +R GY I+ +TP+ F+ LP+ TD+ Q D+ +P E
Sbjct: 662 KVLGLPGVRTDFRGYT--ISSYLTPYMNNFISIDPTTLPINTDIRQTDIQVVPTE 714
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.403
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,010,713
Number of extensions: 2135255
Number of successful extensions: 1883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1869
Number of HSP's successfully gapped: 23
Length of query: 431
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 331
Effective length of database: 6,502,202
Effective search space: 2152228862
Effective search space used: 2152228862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)