RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3959
(431 letters)
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 376 bits (966), Expect = e-129
Identities = 204/344 (59%), Positives = 258/344 (75%), Gaps = 2/344 (0%)
Query: 81 HKTKQFETSSSSRNSKVNESESSKIAKFNALLNLNLLNLEELRSLAWSGIPNQVRPDAWR 140
H + + + +E E+S++ KF LL +LEELR L+WSGIP VRP W+
Sbjct: 2 HHHHHHSSGRENLYFQGSEREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWK 61
Query: 141 LLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMML 200
LL+GYLP + +RR L+RK+ EY+ F++ YYD+ DE +QD YRQIHIDIPRMSP ++
Sbjct: 62 LLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPEALI 121
Query: 201 FQQKLVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTL 260
Q K V E+FERILFIWAIRHPASGYVQGINDLVTPFFVVF+ E++ +++ +D+S +
Sbjct: 122 LQPK-VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIE-AEEVDTVDVSGV 179
Query: 261 PKEQRDIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHG 320
P E IEAD++ C+SK LDGIQDNY FAQ GIQ KV L++L+ RID +H HL +H
Sbjct: 180 PAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHE 239
Query: 321 VDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRE 380
V YLQF+FRWMNNLL REVPLRC+IRLWDTY +E D F+ F LYVCAAFL+ WR+++L E
Sbjct: 240 VRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEE 299
Query: 381 RDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHL 424
+DFQ L+L LQNLPT++W D DI +L+AEAYRLK AFADAPNH
Sbjct: 300 KDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKFAFADAPNHY 343
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 331 bits (849), Expect = e-111
Identities = 136/388 (35%), Positives = 204/388 (52%), Gaps = 64/388 (16%)
Query: 100 SESSKIAKFNALL-NLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLE 158
S +I+KF+ +L + ++N ++LR ++W+GIP RP W+LL GYLP +++R++ L+
Sbjct: 3 SIIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQ 62
Query: 159 RKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWA 218
RKR EY +K + +D+ + QI IDIPR +P + L+Q K VQ +RIL++WA
Sbjct: 63 RKRKEYRDSLKHTF-SDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA 121
Query: 219 IRHPASGYVQGINDLVTPFFVVFLQEFLPVGT--DLEQLDLST-LPKEQRDIIEADSFCC 275
IRHPASGYVQGINDLVTPFF FL E+LP D+E D ST + EQ +EAD+F C
Sbjct: 122 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWC 181
Query: 276 LSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLL 335
L+K L+ I DNYI Q GI ++V L L++RID +L+NH V+++QF+FRWMN LL
Sbjct: 182 LTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLL 241
Query: 336 TREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKL------------------ 377
RE + IR+WDTYL+E+ + + +
Sbjct: 242 MREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPT 301
Query: 378 -----------------LRERDFQGLMLMLQNLP------------------------TS 396
+R+ + + T
Sbjct: 302 TALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTK 361
Query: 397 NWSDHDIGVLVAEAYRLKVAFADAPNHL 424
+W++ DI +L++EA+ + + DA +H
Sbjct: 362 DWTETDIEMLLSEAFIWQSLYKDATSHW 389
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 201 bits (511), Expect = 9e-62
Identities = 47/340 (13%), Positives = 99/340 (29%), Gaps = 62/340 (18%)
Query: 91 SSRNSKVNESESSKIAKFNALLNLNLLNLEELRSLAWS-GIPNQVRPDAWRLLAGYLPTS 149
S KV + LL + L+ E+L + + +P+ R W++L G LP
Sbjct: 12 SVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPH 71
Query: 150 SERRQQVLERKRTEYWVFVKQYY----DTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKL 205
E +V+ ++ +Y + +D + R ++ ++
Sbjct: 72 HESHAKVMMYRKEQYLDVLHALKVVRFVSDATPQAEVYLRMYQLESGKLPRS-------- 123
Query: 206 VQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQR 265
P + + +
Sbjct: 124 -------------PSFPLEPDDEVFLAIAKAMEEMVEDS--------------------- 149
Query: 266 DIIEADSFCCLSKFLDGIQDNYIFAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQ 325
D + +F++ + Y + + + + + D L HL
Sbjct: 150 ----VDCYWITRRFVNQLNTKYRDSLPQLPK---AFEQYLNLEDGRLLTHLRMCSAAPKL 202
Query: 326 FSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQG 385
W +P R+WD ++ S ++V LL ++ K++ +
Sbjct: 203 PYDLWFKRCFAGCLPESSLQRVWDKVVSGSCK---ILVFVAVEILLTFKIKVMALNSAEK 259
Query: 386 LMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAFADAPNHLS 425
+ L+N+P +V++A L P H S
Sbjct: 260 ITKFLENIP-----QDSSDAIVSKAIDLWHKHCGTPVHSS 294
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 121 bits (306), Expect = 2e-31
Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 42/295 (14%)
Query: 120 EELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDET 179
++R L W GIP VR W L G + + + E W + +E
Sbjct: 39 RKVRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENED 98
Query: 180 YQD-------IYRQIHIDIPRMSPLMMLFQQK--LVQEMFERILFIWAIRHPASGYVQGI 230
I +DI R P + +FQQ + IL + P GYVQG+
Sbjct: 99 AGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLH-SILGAYTCYRPDVGYVQGM 157
Query: 231 NDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLD--GIQDNYI 288
+ F+ + LD AD+F S L+ +
Sbjct: 158 S------FIA--------AVLILNLD------------TADAFIAFSNLLNKPCQMAFFR 191
Query: 289 FAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLW 348
+ + + L H K+ + + W+ L ++ +PL + R+W
Sbjct: 192 VDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIW 251
Query: 349 DTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDI 403
D + + ++F L+ A +L + +L + DF + L LP ++
Sbjct: 252 DVFCRDGEEF----LFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELF 302
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 116 bits (292), Expect = 1e-29
Identities = 65/301 (21%), Positives = 114/301 (37%), Gaps = 53/301 (17%)
Query: 120 EELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYDTDRDET 179
+ L +L SG+P +R + W+LLAG + Y + + + +
Sbjct: 24 KGLSTLVKSGVPEALRAEVWQLLAG---------CHDNQAMLDRYRILITKDSAQES--- 71
Query: 180 YQDIYRQIHIDIPRMSPLMMLFQQKLV--QEMFERILFIWAIRHPASGYVQGINDLVTPF 237
I DI R P F+ QE +I +++ GY QG + F
Sbjct: 72 ------VITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQS-----F 120
Query: 238 FVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLD--GIQDNYIFAQLGIQ 295
L +P E +FC L K + G++D Y +
Sbjct: 121 LAAVLLLHMP---------------------EEQAFCVLVKIMYDYGLRDLYRNNFEDLH 159
Query: 296 QKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAES 355
K QL+ L+Q +LH+H ++ ++ +W L T + PL + D L E
Sbjct: 160 CKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219
Query: 356 DDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQN-LPTSNWSDHDIGVLVAEAYRLK 414
+ ++ A LL ++ L + DF+G + + LP ++ + L+ +A +K
Sbjct: 220 LNI----IFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIK 275
Query: 415 V 415
V
Sbjct: 276 V 276
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 114 bits (287), Expect = 7e-29
Identities = 49/309 (15%), Positives = 112/309 (36%), Gaps = 44/309 (14%)
Query: 113 NLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYY 172
+ ++E++ S G+P R + W+ LA + + + ++ Y
Sbjct: 43 SKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAE--------QFHLKHQFPSKQQPKDVPYK 94
Query: 173 DTDRDETYQDIYRQIHIDIPRMSPLMMLFQQK--LVQEMFERILFIWAIRHPASGYVQGI 230
+ + T Q I ID+ R P F + Q IL +++ GY QG+
Sbjct: 95 ELLKQLTSQQ--HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGL 152
Query: 231 NDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQRDIIEADSFCCLSKFLD--GIQDNYI 288
+ F L + E ++F L + G++ Y
Sbjct: 153 S-----FVAGILLLHMS---------------------EEEAFKMLKFLMFDMGLRKQYR 186
Query: 289 FAQLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLW 348
+ +Q ++ QL L+ +L+NHL +H + ++ W + + PL R++
Sbjct: 187 PDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVF 246
Query: 349 DTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVA 408
D + + V + L + +L+ + + ++ +++ + + +
Sbjct: 247 DMIFLQGTEVI---FKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLG-LVQMEKTIN 302
Query: 409 EAYRLKVAF 417
+ + + +A
Sbjct: 303 QVFEMDIAK 311
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.1 bits (194), Expect = 7e-16
Identities = 42/410 (10%), Positives = 121/410 (29%), Gaps = 121/410 (29%)
Query: 47 ISDAWVIDD-DEFC-----SPNVNISKKVAQSAALNVINNHKTKQFETSSSSRNSKVNES 100
+ +A + + C + ++ ++ + ++ +H +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-----------PD 301
Query: 101 ESSKI-AKFNALLNLNLLNL-EELRS---LAWSGIPNQVR--PDAWRLLAGYLPTSSERR 153
E + K+ L+ +L E+ + S I +R W + + ++
Sbjct: 302 EVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKL 355
Query: 154 QQVLERKRTEYWVFVKQYYDTDRDETYQD--IYRQIHIDIPRMSPLMMLFQ-------QK 204
++E + + + + ++ IP L +++
Sbjct: 356 TTIIE-------SSLNVLEPAEYRKMFDRLSVFPP-SAHIP-TILLSLIWFDVIKSDVMV 406
Query: 205 LVQEMFERILFIWAIRHPASGYVQGINDLVTPFFVVFLQEFLPVGTDLEQLDLSTLPKEQ 264
+V ++ + L + P + I + L+L + +
Sbjct: 407 VVNKLHKYSL---VEKQPKESTI-SIPSI--------------------YLELKVKLENE 442
Query: 265 ----RDIIEADSFC---CLSKFLDGIQDNYIFAQLG---IQQKVNQLKDLIQRIDTNLHN 314
R I++ + + D Y ++ +G + + L + +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV------ 496
Query: 315 HLLKHGVDYLQFSFRWMNNLLTREVPLRCS----------IRLWDTYLAESDDFAAFQLY 364
+L FR++ + + + ++ + Y+ ++D ++
Sbjct: 497 --------FL--DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP--KYERL 544
Query: 365 VCA--AFLLHWRQKLLRERDFQGLMLMLQNLPTSNWSDHDIGVLVAEAYR 412
V A FL + L+ + L + L + + EA++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMA---------EDEAIFEEAHK 585
Score = 41.0 bits (95), Expect = 8e-04
Identities = 68/443 (15%), Positives = 129/443 (29%), Gaps = 112/443 (25%)
Query: 79 NNHKTKQFETSSSSRNSK----VNESESSKIAKFNALLNL--NLLNLEELRSLAWSGIPN 132
++H FET K V E + ++ ++L+ EE+ + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--MSKD 59
Query: 133 QVRPDAWRLLAGYLPTSSERRQQ--VLERKRTEY-WVFVK------------QYYDTDRD 177
V L L + E Q V E R Y ++ + Y RD
Sbjct: 60 AV--SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 178 ETYQDIYRQIHIDIPRMSPLMMLFQQKL-------------------------------V 206
Y D ++ R+ P + L +Q L V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 207 QEMFERILFIWAIRHPASGYVQGINDLVTP---FFVVFLQEF--LPVGTDLEQLDLSTLP 261
Q + +F W ++ + + +L + ++
Sbjct: 177 QCKMDFKIF-WL----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 262 KEQRDIIEADSFC-CLSKFLDGIQDNYIFAQLGIQQKV---NQLKDLIQRIDTNLHNHL- 316
E R ++++ + CL L +Q+ + + K+ + K + + H+
Sbjct: 232 AELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 317 LKHGVDYLQ-------FSFRWMN---NLLTREV----PLRCSI---------RLWDTYL- 352
L H L ++++ L REV P R SI WD +
Sbjct: 291 LDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 353 AESDDFAAFQLYVCAAFLLHWRQKLLRERDFQGLMLMLQ--NLPTSN----WSD---HDI 403
D + + L R+ F L + ++PT W D D+
Sbjct: 350 VNCDKLTT----IIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 404 GVLVAEAYRLKVAFADAPNHLSG 426
V+V + ++ +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS 427
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.011
Identities = 93/576 (16%), Positives = 154/576 (26%), Gaps = 217/576 (37%)
Query: 17 VPGRPSPKKSVFSSSSQSNANSSFQAYQASISDAWVIDDDE------------FCSPNVN 64
VP + F +SQ F ++ + DD+ + S V
Sbjct: 22 VP------TASFFIASQLQE--QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73
Query: 65 ISKKVAQSAALNVINNHKTKQFET------------SSSSRNSKVNESESSKIAK--FNA 110
SK LN+ FE + + + ++ ++ K A
Sbjct: 74 PSKVGQFDQVLNLCLTE----FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 111 LLNLN----------LLN----------------------LEELRSLAWSGIPNQVRPDA 138
+ L EELR L +
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-Y---------QT 179
Query: 139 WRLLAGYLPTSSERRQQVLERKRTEYWVFVKQYYD-----TDRDETYQDIYRQIHIDIPR 193
+ +L G L S L R + Q + + T Y + IP
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL---LSIP- 235
Query: 194 MS-PLMMLFQQKLVQ-------------EMFERILFIWAIRHPASGYVQGINDLVTP--- 236
+S PL+ + Q L E+ + A+G+ QG+ VT
Sbjct: 236 ISCPLIGVIQ--LAHYVVTAKLLGFTPGELRSYL-------KGATGHSQGL---VTAVAI 283
Query: 237 --------FF--------VVFL-----QEFLPV--------------------------G 249
FF V+F E P
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 250 TDLEQLDL------STLPKEQRDIIE----ADSFCC----LSKFLDGIQDNY--IFAQLG 293
EQ+ S LP ++ I A + S L G+ A G
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS--LYGLNLTLRKAKAPSG 401
Query: 294 IQQ-KV--NQLKDLIQ----RIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCS-- 344
+ Q ++ ++ K + + H+HLL D + +L+ V
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN------KDLVKNNVSFNAKDI 455
Query: 345 -IRLWDTY----LAESDDFAAFQLYVCAAFL-LHWRQKLLRER-----DF-QGLMLMLQN 392
I ++DT+ L + ++ C L + W + + + DF G L
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW-ETTTQFKATHILDFGPGGASGLGV 514
Query: 393 LPTSNWSDHDIGVLVAEAYRLKVAFADAPNHLSGSK 428
L N + V+VA P+ G K
Sbjct: 515 LTHRNKDGTGVRVIVAG------TLDINPDDDYGFK 544
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 28.1 bits (62), Expect = 4.6
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 10 WKKNSHNVPGRPSPKKSVFSSSSQSNANSSFQA 42
W+K + P + V + + N + +F
Sbjct: 154 WEKQTQKFPHPIEISEDVITGPTIKNMDGTFNV 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.403
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,500,446
Number of extensions: 379202
Number of successful extensions: 939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 21
Length of query: 431
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 335
Effective length of database: 4,021,377
Effective search space: 1347161295
Effective search space used: 1347161295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)