RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3959
         (431 letters)



>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score =  151 bits (383), Expect = 1e-44
 Identities = 88/193 (45%), Positives = 125/193 (64%), Gaps = 5/193 (2%)

Query: 100 SESSKIAKF-NALLNLNLLNLEELRSLAWSGIPNQVRPDAWRLLAGYLPTSSERRQQVLE 158
           S   +I+KF N L +  ++N ++LR ++W+GIP   RP  W+LL GYLP +++R++  L+
Sbjct: 2   SIIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQ 61

Query: 159 RKRTEYWVFVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFERILFIWA 218
           RKR EY     ++  +D+       + QI IDIPR +P + L+Q K VQ   +RIL++WA
Sbjct: 62  RKRKEYRDS-LKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWA 120

Query: 219 IRHPASGYVQGINDLVTPFFVVFLQEFLP---VGTDLEQLDLSTLPKEQRDIIEADSFCC 275
           IRHPASGYVQGINDLVTPFF  FL E+LP   +     +   + +  EQ   +EAD+F C
Sbjct: 121 IRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWC 180

Query: 276 LSKFLDGIQDNYI 288
           L+K L+ I DNYI
Sbjct: 181 LTKLLEQITDNYI 193


>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 77.2 bits (189), Expect = 3e-17
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 325 QFSFRWMNNLLTREVPLRCSIRLWDTYLAESDDFAAFQLYVCAAFLLHWRQKLLRERDFQ 384
               +   +  T    +  +  + D+          F ++VCAAFL+ W  +L+ E DFQ
Sbjct: 96  VTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLM-EMDFQ 154

Query: 385 GLMLMLQNLPTSNWSDHDIGVLVAEAYRLKVAF 417
             +  LQN PT +W++ DI +L++EA+  +  +
Sbjct: 155 ETITFLQNPPTKDWTETDIEMLLSEAFIWQSLY 187



 Score = 74.5 bits (182), Expect = 3e-16
 Identities = 32/66 (48%), Positives = 46/66 (69%)

Query: 291 QLGIQQKVNQLKDLIQRIDTNLHNHLLKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDT 350
           Q GI ++V  L  L++RID +L+NH     V+++QF+FRWMN LL RE  +   IR+WDT
Sbjct: 2   QPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDT 61

Query: 351 YLAESD 356
           YL+E+ 
Sbjct: 62  YLSETS 67


>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein
           desaturase {Castor bean (Ricinus communis) [TaxId:
           3988]}
          Length = 345

 Score = 27.5 bits (61), Expect = 3.0
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 158 ERKRTEYWV-FVKQYYDTDRDETYQDIYRQIHIDIPRMSPLMMLFQQKLVQEMFER 212
           E++    +   V++ ++ D D T       +   I   + LM   +      +F+ 
Sbjct: 211 EKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDD---NLFDH 263


>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
           cochlearium [TaxId: 1494]}
          Length = 483

 Score = 27.5 bits (61), Expect = 3.2
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 317 LKHGVDYLQFSFRWMNNLLTREVPLRCSIRLWDTYLAE 354
            + GV  +   +    N++     LRC     + YL  
Sbjct: 241 AEQGVKNITVGYGECGNMIQDIAALRCLEEQTNEYLKA 278


>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 199

 Score = 26.4 bits (58), Expect = 5.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 246 LPVGTDLEQLDLSTL 260
           +PVG  LE  D  TL
Sbjct: 172 VPVGGSLEYTDEVTL 186


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0534    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,593,980
Number of extensions: 73384
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 11
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)