BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy396
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15008|PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens
GN=PSMD6 PE=1 SV=1
Length = 389
Score = 233 bits (593), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 163/236 (69%), Gaps = 16/236 (6%)
Query: 4 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMI 63
GGDW RN+LK Y+G+YC+AIR + +AAELF+D V TF SYEL ++ T + YTV MI
Sbjct: 170 EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMI 229
Query: 64 ALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLL 123
AL R +LR+K++ + + LHS +R+Y SLY+ Y F + LA VEQ+MK+D L
Sbjct: 230 ALERPDLREKVIKGAEILEVLHS-LPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLF 288
Query: 124 NPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183
PHYR+YV+EMR+ AY Q+L++YRSL+L YMA+ FGV VEFI++E++RF AAGRL CKID
Sbjct: 289 APHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKID 348
Query: 184 SVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVIDF 239
V +V T+ P++ + YQ T+K+GD+ LNR++KL+RVI+
Sbjct: 349 KV-NEIVETNR-----------PDS---KNWQYQETIKKGDLLLNRVQKLSRVINM 389
>sp|Q99JI4|PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus
GN=Psmd6 PE=1 SV=1
Length = 389
Score = 231 bits (589), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 163/236 (69%), Gaps = 16/236 (6%)
Query: 4 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMI 63
GGDW RN+LK Y+G+YC+AIR + +AAELF+D V TF SYEL ++ T + YTV MI
Sbjct: 170 EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMI 229
Query: 64 ALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLL 123
AL R +LR+K++ + + LHS +R+Y SLY+ Y F + LA VEQ+MK+D L
Sbjct: 230 ALERPDLREKVIKGAEILEVLHS-LPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLF 288
Query: 124 NPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183
PHYR+YV+EMR+ AY Q+L++YRSL+L YMA+ FGV V+FI++E++RF AAGRL CKID
Sbjct: 289 APHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKID 348
Query: 184 SVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVIDF 239
V +V T+ P++ + YQ T+K+GD+ LNR++KL+RVI+
Sbjct: 349 KV-NEIVETNR-----------PDS---KNWQYQETIKKGDLLLNRVQKLSRVINM 389
>sp|Q3T0B2|PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus
GN=PSMD6 PE=2 SV=1
Length = 389
Score = 229 bits (585), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 162/236 (68%), Gaps = 16/236 (6%)
Query: 4 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMI 63
GGDW RN+LK Y+G+YC+AIR + +AAELF+D V TF SYEL ++ T + YTV MI
Sbjct: 170 EGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMI 229
Query: 64 ALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLL 123
AL R +LR+K++ + + LHS +R+Y SLY+ Y F + LA VEQ+MK+D L
Sbjct: 230 ALERPDLREKVIKGAEILEVLHS-LPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLF 288
Query: 124 NPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183
PHYR+YV+EMR+ AY Q+L++YRSL+L YMA+ FGV VEFI++E++RF AAGRL CKID
Sbjct: 289 APHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKID 348
Query: 184 SVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVIDF 239
V VV T+ P++ + YQ T+K+G + LNR++KL+RVI+
Sbjct: 349 KV-NEVVETNR-----------PDS---KNWQYQETIKKGGLLLNRVQKLSRVINM 389
>sp|Q9V3G7|PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 OS=Drosophila
melanogaster GN=Rpn7 PE=2 SV=1
Length = 389
Score = 221 bits (562), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 157/236 (66%), Gaps = 16/236 (6%)
Query: 4 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMI 63
GGDW RN+LK Y+GVY +A+R + AA F+D V TF SYEL ++ T +RYTV MI
Sbjct: 170 EGGDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDYPTFVRYTVYVAMI 229
Query: 64 ALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLL 123
ALPR LR K++ + + LH D++++ SLY+ Y F LA VE+ ++ D L+
Sbjct: 230 ALPRNELRDKVIKGSEIQEVLHG-LPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLI 288
Query: 124 NPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183
+PHYR+YV+EMR+ Y Q+L++YRSL+L+YMA+ FGV+VE+I++E+ARF AAGRL K+D
Sbjct: 289 HPHYRYYVREMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVD 348
Query: 184 SVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVIDF 239
V G V T P+ ++ YQ T+K+GD+ LNR++KL+RVI+
Sbjct: 349 RVGGIVETNR------------PD---NKNWQYQATIKQGDLLLNRIQKLSRVINI 389
>sp|Q93Y35|PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6
OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1
Length = 387
Score = 193 bits (491), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 148/235 (62%), Gaps = 16/235 (6%)
Query: 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIA 64
GGDW +N+LK YEG+YC++ R + +AA LF+D + TF +YE+ + T I YTVL +I
Sbjct: 169 GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIIT 228
Query: 65 LPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLN 124
L R +L++K++ + L + L E+ SLY+ Y F A + +K D L
Sbjct: 229 LDRVSLKQKVVDAPEILTVL-GKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLY 287
Query: 125 PHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184
PH+R Y++E+R Y Q L++Y+S++++ MA+ FGVSV+FI++E++RF AAG+L CKID
Sbjct: 288 PHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDK 347
Query: 185 VAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVIDF 239
VAG + T P+A + LYQ T+K+GD LNR++KL+RVID
Sbjct: 348 VAGVLETNR------------PDA---KNALYQATIKQGDFLLNRIQKLSRVIDL 387
>sp|Q8W425|PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa
subsp. japonica GN=RPN7 PE=2 SV=1
Length = 389
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 147/239 (61%), Gaps = 24/239 (10%)
Query: 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIA 64
GGDW +N+LK YEG+YC+A R + +AA LF+D + TF +YEL + T I YTVL +I+
Sbjct: 171 GGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSVIS 230
Query: 65 LPRYNLRKKLMHH----GVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRD 120
L R +L+ K++ V+ + H L E+ SLY+ Y F + + + +K D
Sbjct: 231 LDRVSLKAKVVDAPEILAVIGKVPH-----LSEFLNSLYNCQYKSFFAAFSGLTEQIKLD 285
Query: 121 PLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180
L PH+R+Y++E+R Y Q L++Y+S++++ MA FGV+V+FI+ E++RF AAG+L C
Sbjct: 286 RYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHC 345
Query: 181 KIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVIDF 239
KID VA + T P+A R YQ T+K+GD LNR++KL+RVID
Sbjct: 346 KIDKVACVLETNR------------PDA---RNAFYQATIKQGDFLLNRIQKLSRVIDL 389
>sp|Q20585|PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 OS=Caenorhabditis
elegans GN=rpn-7 PE=3 SV=1
Length = 410
Score = 178 bits (452), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 143/240 (59%), Gaps = 21/240 (8%)
Query: 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIA 64
GGDW +N+L++YE +Y +++R + AA+LF++ VPTF SYEL + +I YTV+ A
Sbjct: 185 GGDWERKNRLRSYEALYRMSVRDFAGAADLFLEAVPTFGSYELMTYENLILYTVITTTFA 244
Query: 65 LPRYNLRKKLM-----HHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQD-MK 118
L R +LR K++ + L+ +REY S YD HY F LAA+E + K
Sbjct: 245 LDRPDLRTKVIRCNEVQEQLTGGGLNGTLIPVREYLESYYDCHYDRFFIQLAALESERFK 304
Query: 119 RDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178
D L+PH+ +Y + MR RAY+Q L Y+++ + MA+ FGVS FI++E+ R A G+L
Sbjct: 305 FDRYLSPHFNYYSRGMRHRAYEQFLTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQL 364
Query: 179 QCKIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVID 238
QC+ID+V G V+ +H K LY+ +K GDI LNR++KLARVI+
Sbjct: 365 QCRIDAVNG-VIEVNHRDSKNH--------------LYKAVIKDGDILLNRIQKLARVIN 409
>sp|Q55C75|PSMD6_DICDI 26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium
discoideum GN=psmD6 PE=1 SV=1
Length = 382
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 144/234 (61%), Gaps = 16/234 (6%)
Query: 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIA 64
GGDW +N+LK YE VY ++IRQ+ A++L+++ V +F S E ++ I+Y + ++
Sbjct: 164 GGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETVASFTSTEFIDYSRFIQYLIFTSLLH 223
Query: 65 LPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLN 124
L R +L++K++ + ++ + L++ S Y+G Y F LA +K D L
Sbjct: 224 LDRVSLKQKVIDSPDVLSVINDTPK-LQDLLQSFYNGDYANFFGALAHFSDSIKGDRYLA 282
Query: 125 PHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184
H R + +EMR+ AY Q L++Y S+ L+ M+ FGVS +FI++E++RF AAGRL CKID
Sbjct: 283 EHSRFFTREMRILAYNQFLESYSSVKLESMSNQFGVSYDFIDRELSRFVAAGRLNCKIDK 342
Query: 185 VAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVID 238
V+G + TT RS+A + LY+TT+++GD LNR++KL+RVI+
Sbjct: 343 VSGVIETT---------RSDA------KNHLYKTTLQQGDNLLNRVQKLSRVIN 381
>sp|Q10335|RPN7_SCHPO Probable 26S proteasome regulatory subunit rpn7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn7 PE=2 SV=1
Length = 409
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 18/231 (7%)
Query: 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIA 64
GGDW +N+LKAY+G+Y ++IR + AA+L +D + TF S EL + ++RY V++ I+
Sbjct: 182 GGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPYYDVVRYAVISGAIS 241
Query: 65 LPRYNLRKKLMHHGVMAQAL--HSQYRDLREYFVSLYDGHYFEFLKCLAAVEQD-MKRDP 121
L R +++ K++ + L + L SLY Y F + LA VE + +K D
Sbjct: 242 LDRVDVKTKIVDSPEVLAVLPQNESMSSLEACINSLYLCDYSGFFRTLADVEVNHLKCDQ 301
Query: 122 LLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181
L HYR+YV+EMR RAY Q+L++YR+LS+ MA FGVSV++I++++A F +L C
Sbjct: 302 FLVAHYRYYVREMRRRAYAQLLESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCV 361
Query: 182 IDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKK 232
ID V G VV T+ EK YQ VK+GD+ LN+L+K
Sbjct: 362 IDRVNG-VVFTNRPDEKNR--------------QYQEVVKQGDVLLNKLQK 397
>sp|Q06103|RPN7_YEAST 26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN7 PE=1 SV=3
Length = 429
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 18/231 (7%)
Query: 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIA 64
GGDW RN+ K Y G++CLA+R + AA+L VD + TF S EL + +I Y + +
Sbjct: 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFT 260
Query: 65 LPRYNLRKKLMHHGVMAQALHSQ--YRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRD-P 121
L R +L+ K++ + + + + + +SLY Y + L ++
Sbjct: 261 LERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCK 320
Query: 122 LLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181
LN H +V+EMR + Y Q+L++Y++LSLK MA FGVSV F++ ++ +F +L C
Sbjct: 321 YLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCV 380
Query: 182 IDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKK 232
ID V G V T P+ ++ Y VK+GD L +L+K
Sbjct: 381 IDRVNGIVETNR------------PD---NKNAQYHLLVKQGDGLLTKLQK 416
>sp|Q54QX3|CSN1_DICDI COP9 signalosome complex subunit 1 OS=Dictyostelium discoideum
GN=csn1 PE=1 SV=1
Length = 458
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 16/219 (7%)
Query: 7 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIR------YTVLA 60
D + KL++ G+Y L +Y AA F++ FE + F II Y L
Sbjct: 198 DNVSNAKLRSVNGLYNLDGSRYKLAARKFIET--PFEQSNV--FSDIISPQDIAYYGGLC 253
Query: 61 CMIALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRD 120
+ R L+KK++ + L +LRE Y+ Y LK L ++ + D
Sbjct: 254 ALATFDRNELKKKVIDDPMFKNYLE-LVPELRELINDFYNTKYGSCLKYLDKMKPILLLD 312
Query: 121 PLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180
L H Q +R +A Q Y+S+ + MA F +V +EKE+++ +Q
Sbjct: 313 IHLYKHVEILYQRIRSKALVQYFSPYQSVDMNIMASAFNTTVTLLEKEISKLIMENEIQA 372
Query: 181 KIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTT 219
+IDS + + K D R+ E ++ G +Q +
Sbjct: 373 RIDSHNKRLY-----ARKADQRTTTFEKTVQVGSDFQNS 406
>sp|Q6NRT5|CSN1_XENLA COP9 signalosome complex subunit 1 OS=Xenopus laevis GN=csn1 PE=2
SV=1
Length = 487
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 13 KLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLRK 72
KLK G+ LA R+Y +AA+ F ++ +F+ + E + V + AL ++ R+
Sbjct: 244 KLKCAAGLAELAARKYKQAAKCF--LLASFDHCDFPELLSPSNVAVYGGLCALATFD-RQ 300
Query: 73 KLMHHGVMAQA------LHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPH 126
+L + + + + L Q RD+ Y+ Y LK L ++ ++ D L PH
Sbjct: 301 ELQRNVISSSSFKLFLELEPQVRDI---IFKFYESKYASCLKMLDEIKDNLLLDMYLAPH 357
Query: 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184
R ++R RA Q Y S + MA F +V +E E+ + G + +IDS
Sbjct: 358 VRTLYTQIRNRALIQYFSPYVSADMYKMATAFNTTVSALEDELTQLILEGLINARIDS 415
>sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1
PE=1 SV=2
Length = 441
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 3/174 (1%)
Query: 13 KLKAYEGVYCLAIRQYCRAAELFVDVVPTF-ESY-ELAEFGTIIRYTVLACMIALPRYNL 70
KL+ G+ L +++Y AA F+DV P SY E+ I Y L + + R L
Sbjct: 216 KLRCASGLAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSEL 275
Query: 71 RKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHY 130
++K++ + + + D+RE Y Y L+ LA+++ ++ D L+ H
Sbjct: 276 KQKVIDN-INFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTL 334
Query: 131 VQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184
++R +A Q + S+ L MA F SV +EKE+ ++Q +IDS
Sbjct: 335 YDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDS 388
>sp|Q99LD4|CSN1_MOUSE COP9 signalosome complex subunit 1 OS=Mus musculus GN=Gps1 PE=1
SV=1
Length = 471
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 13 KLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLRK 72
KLK G+ LA R+Y +AA+ F ++ +F+ + E + V + AL ++ R+
Sbjct: 228 KLKCAAGLAELAARKYKQAAKCF--LLASFDHCDFPELLSPSNVAVYGGLCALATFD-RQ 284
Query: 73 KLMHHGVMAQA------LHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPH 126
+L + + + + L Q RD+ Y+ Y LK L ++ ++ D L PH
Sbjct: 285 ELQRNVISSSSFKLFLELEPQVRDI---IFKFYESKYASCLKMLDEMKDNLLLDMYLAPH 341
Query: 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184
R ++R RA Q Y S + MA F +V +E E+ + G + +IDS
Sbjct: 342 VRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDS 399
>sp|P97834|CSN1_RAT COP9 signalosome complex subunit 1 OS=Rattus norvegicus GN=Gps1
PE=1 SV=1
Length = 471
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 13 KLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLRK 72
KLK G+ LA R+Y +AA+ F ++ +F+ + E + V + AL ++ R+
Sbjct: 228 KLKCAAGLAELAARKYKQAAKCF--LLASFDHCDFPELLSPSNVAVYGGLCALATFD-RQ 284
Query: 73 KLMHHGVMAQA------LHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPH 126
+L + + + + L Q RD+ Y+ Y LK L ++ ++ D L PH
Sbjct: 285 ELQRNVISSSSFKLFLELEPQVRDI---IFKFYESKYASCLKMLDEMKDNLLLDMYLAPH 341
Query: 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184
R ++R RA Q Y S + MA F +V +E E+ + G + +IDS
Sbjct: 342 VRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDS 399
>sp|Q9VVU5|CSN1_DROME COP9 signalosome complex subunit 1b OS=Drosophila melanogaster
GN=CSN1b PE=2 SV=1
Length = 525
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 9/207 (4%)
Query: 13 KLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLR- 71
+L+ G+ L ++Y AA+ F++ F+ + E + V + AL ++ +
Sbjct: 277 RLECAAGLAELQQKKYKVAAKHFLNA--NFDHCDFPEMISTSNVAVYGGLCALATFDRQE 334
Query: 72 -KKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHY 130
K+L+ + LR+ Y+ Y L L + ++ D + PH
Sbjct: 335 LKRLVIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTL 394
Query: 131 VQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVV 190
++R RA Q Y S + MA F SV +E EV + G++Q +IDS N +
Sbjct: 395 YTKIRNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDS--HNKI 452
Query: 191 TTSHISEKGDCRSEAPEASLDRGILYQ 217
+++ D R+ E +L G YQ
Sbjct: 453 L---FAKEADQRNSTFERALIMGKQYQ 476
>sp|Q7RXQ1|CSN1_NEUCR COP9 signalosome complex subunit 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-1 PE=1 SV=1
Length = 425
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 9/191 (4%)
Query: 2 SISGGDWSARNKLKAY----EGVYCLAIRQYCRAAELFVDV---VPTFESYELAEFGTII 54
S++ D A+ LK Y G+ L +Y AA FV+ VP ++A +
Sbjct: 180 SVNDSDPKAK-ALKTYSKIANGIAALGQERYKEAAFCFVEASSGVPPEIYNQIASPNDVA 238
Query: 55 RYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVE 114
Y L + + R+ L+ L+ + + L + +R +G Y ++ L +
Sbjct: 239 IYGGLLALATMDRHELQANLLDNDSFREFLQREPH-IRRAITQFVNGRYAACIEILESYR 297
Query: 115 QDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAA 174
D D L H ++R ++ Q L+ + + L M + F IE E+
Sbjct: 298 PDYLLDIYLQKHVPKLYADIRTKSIVQYLKPFSCVRLDTMQKAFNGPGPSIEDELFTMIK 357
Query: 175 AGRLQCKIDSV 185
G+L +ID++
Sbjct: 358 DGKLNARIDAI 368
>sp|Q1DXU0|EIF3A_COCIM Eukaryotic translation initiation factor 3 subunit A
OS=Coccidioides immitis (strain RS) GN=TIF32 PE=3 SV=2
Length = 1029
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 55 RYTVLACMIALP----RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCL 110
+ T L ++ +P R +L K ++ G++++ + RDL Y + D H K +
Sbjct: 375 KNTRLTNLLGMPQPPTRASLFKDALNKGLLSRC-RPEIRDL--YNILEVDFHPLSICKKI 431
Query: 111 AAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYM------AQCFGVSVEF 164
+ + +++ DP + + Q + R ++Q+ Q Y S+ LK++ + F V+
Sbjct: 432 SPILKEIGADPEMEKYVLPLQQVILTRLFQQLSQVYESVELKFVHELAHFPEPFQVTSSM 491
Query: 165 IEKEVARFAAAGRLQCKIDSVAGNVVTTSHI 195
IEK + G L ++D V+G + S I
Sbjct: 492 IEKFIMNGCKKGDLAIRVDHVSGVLTFESDI 522
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%)
Query: 105 EFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEF 164
+F+K LA + ++ D ++ H ++ + M + ++++ Y + L Y+A+ G++V
Sbjct: 295 DFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARVIGMTVPP 354
Query: 165 IEKEVARFAAAGRLQCKIDSVAGNVV 190
+E+ +AR +L ID VV
Sbjct: 355 VERAIARMILDKKLMGSIDQHGDTVV 380
>sp|Q2UKG6|EIF3A_ASPOR Eukaryotic translation initiation factor 3 subunit A OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=tif32 PE=3 SV=1
Length = 1038
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 55 RYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAV 113
R T L M P R L K ++ G++ +A + RDL Y + D H K + +
Sbjct: 378 RLTNLLGMAQSPTRAVLFKDALNKGLLKRA-RPEIRDL--YNILEVDFHPLSICKKITPI 434
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKY---MAQ---CFGVSVEFIEK 167
+ + DP + + Q + R ++Q+ Q Y S+SLK+ +AQ F V+ IEK
Sbjct: 435 LKQIGADPEMEKYVVPLQQVILTRLFQQLSQVYESVSLKFVYELAQFPDPFQVTPAMIEK 494
Query: 168 EVARFAAAGRLQCKIDSVAG 187
+ G L ++D ++G
Sbjct: 495 FIMNGCKKGDLAIRVDHISG 514
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 58 VLACMIALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDM 117
+L+ LP YN +++ MA A + SL D F+K L ++++
Sbjct: 258 MLSTKEVLP-YNTSPRIVAIRAMADAFRKR---------SLKD-----FMKALEEHKKEL 302
Query: 118 KRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGR 177
D ++ H ++ + M + ++++ Y + L Y+A+ G++V EK +AR +
Sbjct: 303 VEDKVVAVHSQNLERTMLEKEISRVIEPYSEIELSYIARVIGMTVPPTEKAIARMILDKK 362
Query: 178 LQCKIDSVAGNVV 190
L ID VV
Sbjct: 363 LMGSIDQHGDTVV 375
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 56 YTVLACMIALPRYNLRKKLMHHGVMAQALHS--QYRDLREYFVSLYDGHYFEFLKCLAAV 113
Y +L+ M + R +L+ ++ +G + L S Q +L + S G FE ++ +V
Sbjct: 361 YGMLSAMATMSRADLKLQVSGNGTFRKLLESEPQLIELLGSYTSSRFGRCFEIMR---SV 417
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFA 173
+ + DP ++ + +++R + Q LQ Y ++ + MA+ G+S ++ +
Sbjct: 418 KPRLLLDPFISRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAVGMSSAELQLSLLELI 477
Query: 174 AAGRLQCKIDSVAGNV 189
+ KID G V
Sbjct: 478 EQKHVSLKIDQNEGIV 493
>sp|A2Q8I1|EIF3A_ASPNC Eukaryotic translation initiation factor 3 subunit A OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=tif32 PE=3
SV=1
Length = 1052
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 54 IRYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAA 112
R T L M + P R L K ++ G++ +A + RDL Y + D H K +
Sbjct: 377 TRLTNLLGMASPPTRAVLFKDALNKGLLKRA-RPEIRDL--YNILEVDFHPLSICKKITP 433
Query: 113 VEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKY---MAQ---CFGVSVEFIE 166
+ + + DP + + Q + R ++Q+ Q Y S+ LK+ +AQ F ++ IE
Sbjct: 434 ILKQIGADPEMEKYVLPLQQVILTRLFQQLSQVYESVELKFVYELAQFPDPFQITPSMIE 493
Query: 167 KEVARFAAAGRLQCKIDSVAG 187
K + G L ++D ++G
Sbjct: 494 KFIMNGCKKGDLAIRVDHISG 514
>sp|A1CRE5|EIF3A_ASPCL Eukaryotic translation initiation factor 3 subunit A OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=tif32 PE=3 SV=1
Length = 1044
Score = 39.3 bits (90), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 24/195 (12%)
Query: 55 RYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAV 113
R T L M P R L + ++ G++ +A + RDL Y + D H K + +
Sbjct: 378 RLTNLLGMAQAPSRAVLFRDALNKGLLKRA-RPEIRDL--YNILEVDFHPLSICKKITPI 434
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYM------AQCFGVSVEFIEK 167
+ + DP + + Q + R ++Q+ Q Y S+ LK++ + F V+ IEK
Sbjct: 435 LKQIGADPEMEKYVLPLQQVILTRLFQQLSQVYESVELKFIYELAQFPEPFQVTPAMIEK 494
Query: 168 EVARFAAAGRLQCKIDSVAGNVVTTSHI----------SEKGDCRSEAPEASLDRGILYQ 217
+ G L ++D ++G + + I S G SEA S+ R L
Sbjct: 495 FIMNGCKKGDLAIRVDHISGVLTFDTDIFSSAKALHPGSAAGSAESEA--GSVQR--LQN 550
Query: 218 TTVKRGDIFLNRLKK 232
T + + L RL K
Sbjct: 551 TPAEIARLQLTRLAK 565
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 116 DMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAA 175
D+ DP + + + MR +A +++ Y +L ++++ +SV + ++
Sbjct: 340 DVLADPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHIKISVTEAQDILSFLILD 399
Query: 176 GRLQCKIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLN 228
+L KID +G VV S S+ RS E + L+Q T+K GD F N
Sbjct: 400 KKLNAKIDQESGTVVVES-ASDVERLRS-VEEWNESLRTLWQVTLKDGDGFKN 450
>sp|Q0CUP6|EIF3A_ASPTN Eukaryotic translation initiation factor 3 subunit A OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=tif32 PE=3
SV=1
Length = 1040
Score = 38.1 bits (87), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 55 RYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAV 113
R T L M P R L K M+ G++ +A + R+L Y + D H K + +
Sbjct: 378 RLTNLLGMAQPPTRAVLFKDAMNKGLLKRA-RPEIREL--YNILEVDFHPLSICKKITPI 434
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKY---MAQ---CFGVSVEFIEK 167
+ + DP + + Q + R ++Q+ Q Y S+ LK+ +AQ F ++ IEK
Sbjct: 435 LKQIGSDPEMEKYVVPLQQVILTRLFQQLSQVYESVELKFVYELAQFPDPFQITPAMIEK 494
Query: 168 EVARFAAAGRLQCKIDSVAG 187
+ G L ++D ++G
Sbjct: 495 FIMNGCKKGDLAIRVDHISG 514
>sp|Q4WJQ1|EIF3A_ASPFU Eukaryotic translation initiation factor 3 subunit A OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=tif32 PE=3 SV=2
Length = 1051
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 55 RYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAV 113
R T L M P R L + ++ G++ +A + RDL Y + D H K + +
Sbjct: 378 RLTNLLGMAQPPSRAVLFRDALNKGLLKRA-RPEIRDL--YNILEVDFHPLSICKKITPI 434
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKY---MAQ---CFGVSVEFIEK 167
+ + DP + + Q + R ++Q+ Q Y S+ LK+ +AQ F ++ IEK
Sbjct: 435 LKQIGADPEMEKYVLPLQQVILTRLFQQLSQVYESVELKFVYELAQFPDPFQITPAMIEK 494
Query: 168 EVARFAAAGRLQCKIDSVAG 187
+ G L ++D AG
Sbjct: 495 FIMNGCKKGDLAIRVDHTAG 514
>sp|B0XP13|EIF3A_ASPFC Eukaryotic translation initiation factor 3 subunit A OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=tif32 PE=3 SV=1
Length = 1051
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 55 RYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAV 113
R T L M P R L + ++ G++ +A + RDL Y + D H K + +
Sbjct: 378 RLTNLLGMAQPPSRAVLFRDALNKGLLKRA-RPEIRDL--YNILEVDFHPLSICKKITPI 434
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKY---MAQ---CFGVSVEFIEK 167
+ + DP + + Q + R ++Q+ Q Y S+ LK+ +AQ F ++ IEK
Sbjct: 435 LKQIGADPEMEKYVLPLQQVILTRLFQQLSQVYESVELKFVYELAQFPDPFQITPAMIEK 494
Query: 168 EVARFAAAGRLQCKIDSVAG 187
+ G L ++D AG
Sbjct: 495 FIMNGCKKGDLAIRVDHTAG 514
>sp|A1D4A7|EIF3A_NEOFI Eukaryotic translation initiation factor 3 subunit A OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=tif32 PE=3 SV=1
Length = 1067
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 55 RYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAV 113
R T L M P R L + ++ G++ +A + RDL Y + D H K + +
Sbjct: 378 RLTNLLGMAQPPSRAVLFRDALNKGLLKRA-RPEIRDL--YNILEVDFHPLSICKKITPI 434
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKY---MAQ---CFGVSVEFIEK 167
+ + DP + + Q + R ++Q+ Q Y S+ LK+ +AQ F ++ IEK
Sbjct: 435 LKQIGADPEMEKYVLPLQQVILTRLFQQLSQVYESVELKFVYELAQFPDPFQITPAMIEK 494
Query: 168 EVARFAAAGRLQCKIDSVAG 187
+ G L ++D +G
Sbjct: 495 FIMNGCKKGDLAIRVDHTSG 514
>sp|Q6C161|EIF3A_YARLI Eukaryotic translation initiation factor 3 subunit A OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TIF32 PE=3 SV=1
Length = 955
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
Query: 55 RYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSL-YDGHYFEFLKCLAAV 113
R T L ++ L R R L+ + L +++ + +L D H L V
Sbjct: 350 RNTRLTGLLNLQRTPTRDALLKSALSRNILAHVKPEIKALYKTLEVDFHPLSIRAKLTPV 409
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEF------IEK 167
+ P P++ Q + R ++Q+ Q Y S+ L ++ Q F IE+
Sbjct: 410 VGAIAEAPEFKPYFAPLYQVILTRLFQQLSQVYESVKLDFVIQLATFPAPFSATPLEIEQ 469
Query: 168 EVARFAAAGRLQCKID 183
+ R A G L KID
Sbjct: 470 FIVRACAQGELAIKID 485
>sp|Q2F5R8|EIF3E_BOMMO Eukaryotic translation initiation factor 3 subunit E OS=Bombyx mori
GN=eIF3-S6 PE=2 SV=1
Length = 445
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLYDGHYFE-----F 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY FE
Sbjct: 261 ILRYLATAVIINRSRRNALKDLVK--VIQQEAYT-YRDPITEFIEHLYVNFDFEAARRKL 317
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C A + D L +V+ RL ++ + ++ +S+ +A+ + + E
Sbjct: 318 NQCQAVLLTDF----FLIACLEEFVENARLMIFETFCRIHQVISIGMLAENLNMQPDEAE 373
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 374 CWIVNLIRNARLDAKIDSKLGHVV 397
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/86 (18%), Positives = 44/86 (51%)
Query: 105 EFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEF 164
+F + Q+++ DP++ H+ + M + +I++ Y + ++++AQ G+
Sbjct: 317 DFQVAFGSFPQELQMDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSK 376
Query: 165 IEKEVARFAAAGRLQCKIDSVAGNVV 190
+EK++++ +L +D G ++
Sbjct: 377 VEKKLSQMILDQKLSGSLDQGEGMLI 402
>sp|Q5B9N7|EIF3A_EMENI Eukaryotic translation initiation factor 3 subunit A OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=tif32 PE=3 SV=2
Length = 1035
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 55 RYTVLACMIALP-RYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAV 113
R T L M+ P R L + ++ G++ + + + R+L Y + D H K + +
Sbjct: 378 RLTNLLGMLQSPTRAVLFRDALNKGLLKR-VRPEIREL--YNILEVDFHPLSICKKVTPI 434
Query: 114 EQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKY---MAQ---CFGVSVEFIEK 167
+ + DP + + Q + R ++Q+ Q Y S+ LK+ +AQ F ++ IEK
Sbjct: 435 LKKIGDDPEMEKYVVPLQQVILTRLFQQLSQVYESVELKFVYELAQFPDPFQITPSMIEK 494
Query: 168 EVARFAAAGRLQCKIDSVAG 187
+ G L ++D ++G
Sbjct: 495 FIMNGCKKGDLAIRVDHISG 514
>sp|O94308|CSN1_SCHPO COP9 signalosome complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn1 PE=1 SV=1
Length = 422
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%)
Query: 103 YFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSV 162
Y L L QD D L P + +R R+ L Y +L +A F +
Sbjct: 276 YSLLLDTLQQNAQDYSLDMYLAPQLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDE 335
Query: 163 EFIEKEVARFAAAGRLQCKIDSVAGNV 189
FIEK + A +L K+DS+ V
Sbjct: 336 NFIEKNLLEIIEAKKLNGKVDSLQKRV 362
>sp|B4IXG1|EIF3E_DROGR Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
grimshawi GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|A6V3Q8|TPMT_PSEA7 Thiopurine S-methyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=tpm PE=3 SV=1
Length = 218
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 123 LNPHYRHYVQEMRLRAYKQILQAY--RSLSLKYM-AQCFGV-SVEFIEKEVARFAAAGRL 178
+NP+ ++ +RL+A +Q+L ++L L ++ AQ V VE EK V+ F A L
Sbjct: 22 VNPYLMRHLSRLRLQAGEQVLVPLCGKTLDLAWLAAQGLDVLGVELSEKAVSDFFAENGL 81
Query: 179 QCKIDSVAG 187
Q ID + G
Sbjct: 82 QPAIDQMDG 90
>sp|Q29EX2|EIF3E_DROPS Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
pseudoobscura pseudoobscura GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B4H5N1|EIF3E_DROPE Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
persimilis GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B4LG58|EIF3E_DROVI Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
virilis GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|Q7NTA7|UVRB_CHRVO UvrABC system protein B OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=uvrB PE=3 SV=1
Length = 670
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 74 LMHHGVMAQALHSQYRDL-----REYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYR 128
+ H+ +A L+S+ R+ EYFVS YD Y++ + + + +++D +N H
Sbjct: 68 MAHNKTLAAQLYSEMREFFPHNAVEYFVSYYD--YYQPEAYVPSRDLFIEKDSSINEH-- 123
Query: 129 HYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVS 161
+++MRL A K IL+ + + ++ +G+
Sbjct: 124 --IEQMRLSATKSILERPDCIIVATVSAIYGIG 154
>sp|B4PK98|EIF3E_DROYA Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
yakuba GN=eIF3-S6 PE=3 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B3NDH5|EIF3E_DROER Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
erecta GN=eIF3-S6 PE=3 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B4HK67|EIF3E_DROSE Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
sechellia GN=eIF3-S6 PE=3 SV=2
Length = 434
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 249 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 305
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 306 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 361
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 362 CWIVNLIRNARLNAKIDSKLGHVV 385
>sp|B4QMY7|EIF3E_DROSI Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
simulans GN=eIF3-S6 PE=3 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|O77410|EIF3E_DROME Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
melanogaster GN=eIF3-S6 PE=2 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B4KY00|EIF3E_DROMO Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
mojavensis GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B3M4D9|EIF3E_DROAN Eukaryotic translation initiation factor 3 subunit E OS=Drosophila
ananassae GN=eIF3-S6 PE=3 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B4MYA1|EI3E1_DROWI Eukaryotic translation initiation factor 3 subunit E-1
OS=Drosophila willistoni GN=eIF3-S6-1 PE=3 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVSCLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|B4N3B0|EI3E2_DROWI Eukaryotic translation initiation factor 3 subunit E-2
OS=Drosophila willistoni GN=eIF3-S6-2 PE=3 SV=1
Length = 434
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 53 IIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD-LREYFVSLY-----DGHYFEF 106
I+RY A +I R N K L+ V+ Q ++ YRD + E+ LY +G +
Sbjct: 250 IMRYLATAVVINRTRRNALKDLI--KVIQQESYT-YRDPITEFLECLYVNFDFEGARLKL 306
Query: 107 LKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIE 166
+C + D LN +V++ RL ++ + ++ +++ +A + E
Sbjct: 307 HECQTVILNDFFIVACLN----EFVEDARLMIFETFCRIHQCITISMLADKLNMKPNEAE 362
Query: 167 KEVARFAAAGRLQCKIDSVAGNVV 190
+ RL KIDS G+VV
Sbjct: 363 CWIVNLIRNARLNAKIDSKLGHVV 386
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 107 LKCLAAVE---QDMKRDPLLNPHYRHYVQEM----RLRAYKQILQAYRSLSLKYMAQCFG 159
++ + AVE Q + D L + R YV ++ R + ++++ Y S+ L +A+ G
Sbjct: 322 IRDITAVERILQTYQHDILDDDFIRQYVDKILYSIRSQVLIELVKPYTSVKLSLLAKKLG 381
Query: 160 VSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSH 194
VS+ IE+ + R+ KID V V T S
Sbjct: 382 VSISIIEQALVGLIIDERVNGKIDMV-NEVFTISQ 415
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,440,907
Number of Sequences: 539616
Number of extensions: 3176687
Number of successful extensions: 9131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 9065
Number of HSP's gapped (non-prelim): 88
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)