Query psy396
Match_columns 239
No_of_seqs 118 out of 667
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:45:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 7.5E-50 2.6E-54 372.5 17.6 222 2-239 198-423 (429)
2 3txn_A 26S proteasome regulato 100.0 7E-41 2.4E-45 309.2 16.8 210 6-238 174-384 (394)
3 4b4t_Q 26S proteasome regulato 99.9 6.6E-25 2.3E-29 197.5 13.1 211 5-238 209-424 (434)
4 4b4t_P 26S proteasome regulato 99.9 2.2E-24 7.4E-29 201.8 10.7 217 4-237 210-433 (445)
5 4b4t_O 26S proteasome regulato 99.7 2.8E-18 9.4E-23 158.2 10.5 185 2-194 157-352 (393)
6 3t5x_A PCI domain-containing p 99.6 4.2E-15 1.5E-19 125.5 13.3 167 11-194 13-192 (203)
7 1ufm_A COP9 complex subunit 4; 99.5 1E-14 3.4E-19 106.8 4.7 69 125-194 7-75 (84)
8 4b4t_S RPN3, 26S proteasome re 99.4 3.8E-12 1.3E-16 120.5 14.3 181 6-194 264-447 (523)
9 3t5v_B Nuclear mRNA export pro 99.3 4.2E-11 1.4E-15 112.2 14.4 177 10-194 218-428 (455)
10 3chm_A COP9 signalosome comple 98.8 4.9E-08 1.7E-12 80.0 11.3 131 52-194 24-156 (169)
11 4b0z_A RPN12, 26S proteasome r 97.5 0.0025 8.6E-08 54.1 13.6 113 50-171 96-214 (229)
12 1wi9_A Protein C20ORF116 homol 97.5 0.00037 1.3E-08 48.7 6.8 57 137-194 10-66 (72)
13 1rz4_A Eukaryotic translation 95.9 0.036 1.2E-06 46.9 9.2 110 52-171 64-176 (226)
14 1xn7_A Hypothetical protein YH 95.6 0.019 6.5E-07 40.6 5.1 42 137-178 5-46 (78)
15 2k02_A Ferrous iron transport 95.3 0.025 8.7E-07 40.9 5.1 43 137-179 5-47 (87)
16 2jt1_A PEFI protein; solution 95.1 0.043 1.5E-06 38.6 5.7 45 135-179 5-55 (77)
17 4b4t_T 26S proteasome regulato 93.2 0.36 1.2E-05 41.8 8.6 120 52-178 104-226 (274)
18 1qbj_A Protein (double-strande 92.1 0.35 1.2E-05 34.2 5.9 55 136-191 12-69 (81)
19 1qgp_A Protein (double strande 91.2 0.94 3.2E-05 31.4 7.3 54 137-191 17-73 (77)
20 2heo_A Z-DNA binding protein 1 90.5 0.53 1.8E-05 31.7 5.3 46 134-180 11-57 (67)
21 3tqn_A Transcriptional regulat 89.6 0.66 2.2E-05 34.3 5.7 63 127-191 11-74 (113)
22 2b0l_A GTP-sensing transcripti 89.3 0.9 3.1E-05 33.2 6.1 61 130-191 23-86 (102)
23 1ub9_A Hypothetical protein PH 89.1 3.4 0.00012 28.7 9.1 51 133-184 16-66 (100)
24 2htj_A P fimbrial regulatory p 89.0 0.72 2.5E-05 31.8 5.2 42 139-180 5-46 (81)
25 3by6_A Predicted transcription 88.2 0.73 2.5E-05 34.9 5.1 64 126-191 12-76 (126)
26 3t5v_A Nuclear mRNA export pro 88.1 0.73 2.5E-05 40.7 5.8 64 101-169 177-246 (316)
27 4ham_A LMO2241 protein; struct 87.9 0.94 3.2E-05 34.4 5.7 64 126-191 15-79 (134)
28 1sfx_A Conserved hypothetical 87.5 5.5 0.00019 27.7 9.8 45 140-184 26-70 (109)
29 3neu_A LIN1836 protein; struct 87.4 0.94 3.2E-05 34.1 5.3 64 126-191 14-78 (125)
30 2dbb_A Putative HTH-type trans 85.7 1.7 5.7E-05 33.3 6.1 49 137-185 12-63 (151)
31 2p5v_A Transcriptional regulat 85.6 1.8 6.3E-05 33.6 6.3 49 137-185 13-64 (162)
32 2ek5_A Predicted transcription 85.4 1.4 4.7E-05 33.5 5.3 63 127-191 6-69 (129)
33 2oqg_A Possible transcriptiona 85.3 8.2 0.00028 27.5 10.2 49 134-184 22-70 (114)
34 2cfx_A HTH-type transcriptiona 85.2 2 7E-05 32.7 6.3 49 137-185 8-59 (144)
35 1xmk_A Double-stranded RNA-spe 85.1 1.9 6.5E-05 30.3 5.5 46 133-179 11-57 (79)
36 2cg4_A Regulatory protein ASNC 84.9 1.9 6.5E-05 33.1 6.1 49 137-185 11-62 (152)
37 3cuo_A Uncharacterized HTH-typ 84.9 7.6 0.00026 26.8 8.9 57 134-191 25-81 (99)
38 1q1h_A TFE, transcription fact 84.6 0.67 2.3E-05 33.7 3.1 62 120-181 5-66 (110)
39 3c7j_A Transcriptional regulat 84.4 1.5 5.3E-05 36.5 5.7 66 124-191 25-90 (237)
40 1v4r_A Transcriptional repress 84.1 0.33 1.1E-05 35.1 1.2 63 127-191 13-76 (102)
41 2v79_A DNA replication protein 82.6 5.6 0.00019 30.5 7.8 47 147-194 50-98 (135)
42 2cru_A Programmed cell death p 82.3 0.93 3.2E-05 34.4 3.1 54 130-183 34-87 (118)
43 2e1c_A Putative HTH-type trans 82.3 2.5 8.5E-05 33.5 5.8 49 137-185 30-81 (171)
44 2fbi_A Probable transcriptiona 82.0 10 0.00035 27.6 9.0 50 139-188 41-90 (142)
45 4a0z_A Transcription factor FA 81.6 2.8 9.5E-05 34.1 6.0 47 130-176 8-54 (190)
46 2ia0_A Putative HTH-type trans 81.0 3.3 0.00011 32.7 6.2 48 138-185 21-71 (171)
47 3i4p_A Transcriptional regulat 80.9 2.7 9.1E-05 32.8 5.5 50 136-185 5-57 (162)
48 3f6o_A Probable transcriptiona 80.7 6.1 0.00021 28.9 7.2 62 128-191 13-74 (118)
49 1tbx_A ORF F-93, hypothetical 80.6 12 0.00041 26.0 8.9 53 139-191 13-69 (99)
50 1oyi_A Double-stranded RNA-bin 80.3 2.4 8.3E-05 30.0 4.5 46 133-180 17-62 (82)
51 2cyy_A Putative HTH-type trans 80.3 3 0.0001 31.9 5.6 47 138-184 11-60 (151)
52 1i1g_A Transcriptional regulat 80.2 3.6 0.00012 30.8 5.9 43 137-179 7-49 (141)
53 1qqe_A Vesicular transport pro 79.4 18 0.00061 29.9 10.7 106 17-124 163-274 (292)
54 2w25_A Probable transcriptiona 79.3 4.4 0.00015 30.9 6.2 48 138-185 11-61 (150)
55 3bpv_A Transcriptional regulat 79.2 16 0.00054 26.5 9.3 50 139-188 34-83 (138)
56 2d1h_A ST1889, 109AA long hypo 78.8 5.2 0.00018 27.9 6.1 52 135-186 23-74 (109)
57 3ihu_A Transcriptional regulat 78.1 3.5 0.00012 33.6 5.6 64 126-191 17-80 (222)
58 2fh0_A Hypothetical 16.0 kDa p 78.1 0.48 1.6E-05 33.6 0.2 49 135-183 7-55 (81)
59 2hzt_A Putative HTH-type trans 78.0 12 0.00041 26.8 8.0 42 146-187 25-67 (107)
60 1y0u_A Arsenical resistance op 77.9 6.2 0.00021 27.6 6.3 48 131-181 29-76 (96)
61 2pn6_A ST1022, 150AA long hypo 77.9 4.1 0.00014 30.9 5.6 48 138-185 7-57 (150)
62 3dv8_A Transcriptional regulat 77.8 17 0.00059 28.4 9.6 40 148-191 169-208 (220)
63 2l0k_A Stage III sporulation p 77.8 3.1 0.00011 30.0 4.6 36 134-170 7-42 (93)
64 2frh_A SARA, staphylococcal ac 77.2 18 0.00062 26.4 9.0 49 139-187 42-92 (127)
65 3jth_A Transcription activator 77.1 16 0.00054 25.4 8.9 57 133-191 23-79 (98)
66 2rdp_A Putative transcriptiona 77.1 19 0.00066 26.4 9.5 47 141-187 49-95 (150)
67 2nnn_A Probable transcriptiona 76.5 19 0.00065 26.0 9.5 48 140-187 44-91 (140)
68 3tgn_A ADC operon repressor AD 76.4 13 0.00043 27.4 8.0 49 138-187 42-90 (146)
69 2kko_A Possible transcriptiona 76.4 8.7 0.0003 27.6 6.8 51 133-185 25-75 (108)
70 3sxy_A Transcriptional regulat 76.2 3.3 0.00011 33.6 4.9 63 127-191 14-76 (218)
71 1lj9_A Transcriptional regulat 75.9 20 0.00067 26.2 8.9 48 140-187 35-82 (144)
72 1jgs_A Multiple antibiotic res 75.7 20 0.00069 25.9 9.6 47 141-187 41-87 (138)
73 2hs5_A Putative transcriptiona 75.5 5 0.00017 33.3 5.9 63 127-191 30-92 (239)
74 2gxg_A 146AA long hypothetical 75.3 21 0.00073 26.0 9.3 48 139-187 42-89 (146)
75 2a61_A Transcriptional regulat 75.3 21 0.00073 26.0 9.5 48 140-187 39-86 (145)
76 3ech_A MEXR, multidrug resista 75.2 22 0.00074 26.1 9.2 48 140-187 43-90 (142)
77 3eco_A MEPR; mutlidrug efflux 74.8 22 0.00074 25.9 9.0 40 148-187 47-86 (139)
78 2qvo_A Uncharacterized protein 74.5 16 0.00054 25.4 7.7 43 149-191 31-73 (95)
79 2p5k_A Arginine repressor; DNA 74.4 11 0.00037 24.0 6.2 50 134-188 5-59 (64)
80 2nyx_A Probable transcriptiona 74.2 24 0.00083 26.8 9.4 47 141-187 52-98 (168)
81 1hw1_A FADR, fatty acid metabo 73.8 5.2 0.00018 32.7 5.6 64 126-191 8-72 (239)
82 2bv6_A MGRA, HTH-type transcri 73.8 21 0.00072 26.0 8.6 50 138-187 41-90 (142)
83 3bja_A Transcriptional regulat 73.6 16 0.00053 26.5 7.8 48 140-187 39-86 (139)
84 3bdd_A Regulatory protein MARR 73.5 11 0.00039 27.4 7.0 49 139-187 36-84 (142)
85 1on2_A Transcriptional regulat 73.4 25 0.00085 25.9 9.9 48 141-191 15-62 (142)
86 3oop_A LIN2960 protein; protei 73.4 24 0.00083 25.8 9.8 51 141-191 44-97 (143)
87 2qww_A Transcriptional regulat 73.4 24 0.00081 26.1 8.9 51 141-191 48-103 (154)
88 1eij_A Hypothetical protein MT 73.4 0.55 1.9E-05 33.3 -0.5 49 135-183 9-57 (80)
89 3edp_A LIN2111 protein; APC883 73.3 4.2 0.00014 33.9 4.9 63 127-191 11-74 (236)
90 3bj6_A Transcriptional regulat 73.0 25 0.00087 25.8 10.2 53 139-191 45-100 (152)
91 3k0l_A Repressor protein; heli 73.0 28 0.00094 26.2 10.9 49 139-187 51-99 (162)
92 3s2w_A Transcriptional regulat 72.6 27 0.00091 26.2 9.1 46 142-187 58-103 (159)
93 3nrv_A Putative transcriptiona 72.4 17 0.00058 26.8 7.8 48 140-187 46-93 (148)
94 2wv0_A YVOA, HTH-type transcri 72.4 5.7 0.0002 33.1 5.5 64 126-191 11-75 (243)
95 3bro_A Transcriptional regulat 72.2 25 0.00086 25.4 9.7 48 140-187 40-89 (141)
96 3f8m_A GNTR-family protein tra 72.0 7.3 0.00025 32.6 6.1 61 126-191 15-76 (248)
97 3ic7_A Putative transcriptiona 72.0 1 3.5E-05 34.0 0.7 63 127-191 13-76 (126)
98 2hr3_A Probable transcriptiona 71.7 27 0.00091 25.5 8.9 46 146-191 48-96 (147)
99 4ev0_A Transcription regulator 71.7 29 0.001 26.9 9.5 42 146-191 161-202 (216)
100 3eet_A Putative GNTR-family tr 71.6 6 0.0002 33.7 5.6 64 126-191 30-94 (272)
101 2pg4_A Uncharacterized protein 71.4 16 0.00054 25.3 7.0 41 139-179 20-62 (95)
102 1s3j_A YUSO protein; structura 71.3 28 0.00097 25.7 10.4 49 139-187 42-90 (155)
103 3g3z_A NMB1585, transcriptiona 70.6 29 0.00098 25.4 9.0 53 139-191 36-91 (145)
104 1j5y_A Transcriptional regulat 70.3 11 0.00037 30.0 6.6 50 130-179 17-68 (187)
105 3e6m_A MARR family transcripti 70.3 32 0.0011 25.8 9.3 52 140-191 59-113 (161)
106 3bwg_A Uncharacterized HTH-typ 70.3 7.6 0.00026 32.2 5.8 62 128-191 8-70 (239)
107 1r1u_A CZRA, repressor protein 69.7 25 0.00086 24.8 7.9 50 133-184 26-75 (106)
108 2xvc_A ESCRT-III, SSO0910; cel 69.5 6.5 0.00022 25.9 4.0 40 139-178 15-55 (59)
109 2fa5_A Transcriptional regulat 69.4 24 0.00084 26.3 8.2 48 140-187 55-102 (162)
110 1ft9_A Carbon monoxide oxidati 69.3 35 0.0012 26.8 9.5 32 148-179 163-194 (222)
111 3e6c_C CPRK, cyclic nucleotide 69.2 16 0.00054 29.6 7.5 40 148-191 177-216 (250)
112 3dkw_A DNR protein; CRP-FNR, H 68.9 39 0.0013 26.4 10.3 40 148-191 178-217 (227)
113 3r0a_A Putative transcriptiona 68.0 33 0.0011 25.1 9.9 36 149-184 43-78 (123)
114 2fbh_A Transcriptional regulat 68.0 32 0.0011 25.0 10.0 52 140-191 43-98 (146)
115 3nqo_A MARR-family transcripti 67.4 42 0.0014 26.1 10.3 43 145-187 54-96 (189)
116 2gau_A Transcriptional regulat 67.3 40 0.0014 26.5 9.5 41 147-191 179-219 (232)
117 2fmy_A COOA, carbon monoxide o 66.9 43 0.0015 26.1 10.8 40 148-191 167-207 (220)
118 3hsr_A HTH-type transcriptiona 66.6 21 0.00072 26.2 7.2 54 138-191 40-96 (140)
119 2di3_A Bacterial regulatory pr 66.4 11 0.00036 31.0 5.9 65 127-191 6-73 (239)
120 1z7u_A Hypothetical protein EF 66.4 33 0.0011 24.5 8.6 42 147-188 34-76 (112)
121 2eth_A Transcriptional regulat 66.1 38 0.0013 25.1 10.1 49 139-187 49-97 (154)
122 2jxn_A Uncharacterized protein 65.7 1.6 5.6E-05 33.5 0.6 49 135-183 42-90 (127)
123 3cdh_A Transcriptional regulat 65.5 25 0.00086 26.1 7.5 53 139-191 48-103 (155)
124 2fsw_A PG_0823 protein; alpha- 65.3 30 0.001 24.5 7.6 43 146-188 36-79 (107)
125 3cjn_A Transcriptional regulat 64.9 41 0.0014 25.1 9.8 48 140-187 58-105 (162)
126 1u2w_A CADC repressor, cadmium 64.5 36 0.0012 24.8 8.0 58 133-191 42-99 (122)
127 3f6v_A Possible transcriptiona 63.9 30 0.001 26.6 7.8 63 127-191 52-114 (151)
128 3b73_A PHIH1 repressor-like pr 63.7 11 0.00039 27.8 5.0 52 137-191 16-69 (111)
129 3f3x_A Transcriptional regulat 63.4 40 0.0014 24.5 8.9 47 141-188 44-90 (144)
130 3k2z_A LEXA repressor; winged 63.0 12 0.00043 29.8 5.6 45 135-179 6-55 (196)
131 4hbl_A Transcriptional regulat 62.9 20 0.00068 26.6 6.5 53 139-191 46-101 (149)
132 2fu4_A Ferric uptake regulatio 62.9 28 0.00097 23.3 6.7 46 135-180 18-70 (83)
133 1z91_A Organic hydroperoxide r 62.7 15 0.00052 27.0 5.7 52 140-191 46-100 (147)
134 1sfu_A 34L protein; protein/Z- 62.6 14 0.00049 25.5 5.0 41 140-180 21-61 (75)
135 2f2e_A PA1607; transcription f 62.3 34 0.0012 25.9 7.8 42 146-187 35-76 (146)
136 3ryp_A Catabolite gene activat 62.3 51 0.0017 25.3 9.5 40 148-191 167-206 (210)
137 3i71_A Ethanolamine utilizatio 62.2 13 0.00046 24.6 4.4 33 147-179 17-49 (68)
138 3kp7_A Transcriptional regulat 62.0 25 0.00084 26.1 6.9 48 139-187 43-92 (151)
139 2pex_A Transcriptional regulat 62.0 18 0.0006 26.9 6.0 52 140-191 53-107 (153)
140 1bia_A BIRA bifunctional prote 60.3 13 0.00045 32.3 5.6 44 135-178 6-49 (321)
141 3pqk_A Biofilm growth-associat 60.3 40 0.0014 23.4 8.8 60 130-191 20-79 (102)
142 1fse_A GERE; helix-turn-helix 60.1 20 0.00067 23.2 5.3 37 136-174 16-52 (74)
143 3lwf_A LIN1550 protein, putati 60.0 26 0.00088 27.4 6.8 64 118-184 17-80 (159)
144 1tc3_C Protein (TC3 transposas 59.7 13 0.00044 21.6 4.0 26 147-172 20-45 (51)
145 2glo_A Brinker CG9653-PA; prot 58.9 15 0.00052 23.3 4.4 35 134-171 10-48 (59)
146 3t8r_A Staphylococcus aureus C 58.8 19 0.00066 27.4 5.8 44 147-191 27-70 (143)
147 2y75_A HTH-type transcriptiona 58.2 26 0.0009 25.7 6.3 35 147-181 25-59 (129)
148 2hvu_A PDCD5-like protein; YMR 58.2 1.7 5.8E-05 32.9 -0.5 47 137-183 44-90 (116)
149 1uly_A Hypothetical protein PH 58.1 20 0.00068 28.8 6.0 53 127-181 14-66 (192)
150 2pjp_A Selenocysteine-specific 58.0 10 0.00035 28.0 3.9 33 148-180 20-52 (121)
151 3u2r_A Regulatory protein MARR 57.5 46 0.0016 25.1 7.9 41 147-187 61-101 (168)
152 3jw4_A Transcriptional regulat 57.5 23 0.00079 26.1 6.0 42 147-188 56-97 (148)
153 2vn2_A DNAD, chromosome replic 57.1 19 0.00065 26.8 5.3 35 149-183 52-86 (128)
154 1r1t_A Transcriptional repress 57.0 36 0.0012 24.9 6.9 48 134-183 47-94 (122)
155 3kcc_A Catabolite gene activat 56.5 77 0.0026 25.6 9.6 40 148-191 217-256 (260)
156 2jn6_A Protein CGL2762, transp 56.5 21 0.00072 24.8 5.2 42 134-176 10-51 (97)
157 1stz_A Heat-inducible transcri 56.3 17 0.00057 32.1 5.6 45 135-179 18-69 (338)
158 1yyv_A Putative transcriptiona 55.7 60 0.0021 24.1 10.1 48 140-188 41-89 (131)
159 1xd7_A YWNA; structural genomi 55.3 34 0.0012 25.8 6.6 34 150-183 25-58 (145)
160 3d0s_A Transcriptional regulat 55.2 73 0.0025 24.8 9.4 40 148-191 177-216 (227)
161 2x4h_A Hypothetical protein SS 54.9 58 0.002 23.6 9.5 47 141-191 24-70 (139)
162 2h09_A Transcriptional regulat 54.7 64 0.0022 24.0 9.6 43 146-191 52-94 (155)
163 1z05_A Transcriptional regulat 54.5 26 0.00088 31.4 6.7 48 131-178 36-83 (429)
164 3c57_A Two component transcrip 54.1 26 0.00089 24.5 5.4 39 135-175 31-69 (95)
165 2lnb_A Z-DNA-binding protein 1 54.0 46 0.0016 23.2 6.3 48 131-178 17-64 (80)
166 2jsc_A Transcriptional regulat 53.8 30 0.001 25.1 5.9 56 128-185 16-71 (118)
167 2elh_A CG11849-PA, LD40883P; s 53.6 29 0.001 23.8 5.5 37 134-173 27-63 (87)
168 2hoe_A N-acetylglucosamine kin 53.6 6.2 0.00021 34.9 2.3 51 128-179 11-64 (380)
169 2jpc_A SSRB; DNA binding prote 53.3 28 0.00095 21.7 5.0 29 146-174 11-39 (61)
170 3deu_A Transcriptional regulat 53.2 71 0.0024 24.1 9.5 45 147-191 67-114 (166)
171 3fm5_A Transcriptional regulat 53.2 64 0.0022 23.6 8.0 40 148-187 54-93 (150)
172 2k9l_A RNA polymerase sigma fa 53.0 14 0.00047 25.3 3.6 26 146-171 46-71 (76)
173 3iuo_A ATP-dependent DNA helic 52.8 16 0.00054 27.3 4.2 33 147-179 31-64 (122)
174 1je8_A Nitrate/nitrite respons 52.6 29 0.001 23.5 5.3 29 146-174 34-62 (82)
175 3e97_A Transcriptional regulat 52.5 81 0.0028 24.6 10.0 40 148-191 175-214 (231)
176 1z6r_A MLC protein; transcript 52.5 23 0.00077 31.4 5.9 47 132-178 14-60 (406)
177 1x3u_A Transcriptional regulat 51.8 32 0.0011 22.6 5.3 29 146-174 29-57 (79)
178 3eqx_A FIC domain containing t 51.6 22 0.00074 31.8 5.6 53 138-191 301-353 (373)
179 2lkp_A Transcriptional regulat 51.5 62 0.0021 23.0 9.1 47 135-183 34-80 (119)
180 3iwz_A CAP-like, catabolite ac 51.3 84 0.0029 24.4 9.7 40 148-191 187-226 (230)
181 3boq_A Transcriptional regulat 51.2 33 0.0011 25.5 5.9 44 144-187 58-101 (160)
182 3la7_A Global nitrogen regulat 51.1 87 0.003 24.9 8.9 40 148-191 193-232 (243)
183 2rnj_A Response regulator prot 49.8 28 0.00097 23.9 5.0 29 146-174 42-70 (91)
184 2rn7_A IS629 ORFA; helix, all 49.7 31 0.001 24.4 5.3 45 133-177 10-59 (108)
185 2qlz_A Transcription factor PF 49.7 70 0.0024 26.5 8.2 48 141-191 171-218 (232)
186 2oz6_A Virulence factor regula 49.7 84 0.0029 23.9 9.5 40 148-191 164-203 (207)
187 2k9s_A Arabinose operon regula 49.4 28 0.00095 24.5 5.0 34 139-172 8-44 (107)
188 2fxa_A Protease production reg 49.0 50 0.0017 26.3 7.1 46 142-187 56-101 (207)
189 2w48_A Sorbitol operon regulat 48.9 40 0.0014 28.8 6.8 46 140-185 13-58 (315)
190 2vxz_A Pyrsv_GP04; viral prote 48.7 35 0.0012 27.0 5.6 43 135-178 12-54 (165)
191 3lsg_A Two-component response 47.9 36 0.0012 23.7 5.3 25 148-172 19-43 (103)
192 2jrt_A Uncharacterized protein 47.8 26 0.00088 25.1 4.5 42 134-177 37-78 (95)
193 2qc0_A Uncharacterized protein 47.4 27 0.00094 30.9 5.6 52 139-191 302-353 (373)
194 3mn2_A Probable ARAC family tr 46.9 27 0.00093 24.6 4.6 25 147-171 17-41 (108)
195 2p7v_B Sigma-70, RNA polymeras 45.6 37 0.0013 21.8 4.8 29 146-174 23-51 (68)
196 4b0z_A RPN12, 26S proteasome r 45.0 1.1E+02 0.0039 24.9 8.7 148 23-174 18-185 (229)
197 1r7j_A Conserved hypothetical 44.9 78 0.0027 22.2 9.2 39 149-191 21-59 (95)
198 2gqq_A Leucine-responsive regu 44.9 4.1 0.00014 31.7 -0.3 49 131-180 11-59 (163)
199 2ifu_A Gamma-SNAP; membrane fu 44.8 40 0.0014 27.9 6.0 24 17-40 160-183 (307)
200 1ylf_A RRF2 family protein; st 44.8 97 0.0033 23.3 9.1 43 147-191 29-71 (149)
201 2wte_A CSA3; antiviral protein 44.7 69 0.0024 26.6 7.4 49 141-191 159-207 (244)
202 2ra5_A Putative transcriptiona 44.2 5.4 0.00019 33.3 0.4 63 127-191 18-81 (247)
203 3k69_A Putative transcription 44.1 29 0.00098 27.1 4.6 35 147-181 27-61 (162)
204 4b8x_A SCO5413, possible MARR- 44.0 69 0.0024 23.8 6.8 44 144-187 47-90 (147)
205 3cuq_B Vacuolar protein-sortin 43.5 41 0.0014 27.7 5.7 49 141-190 161-209 (218)
206 1pdn_C Protein (PRD paired); p 42.8 58 0.002 22.8 6.0 43 133-178 21-63 (128)
207 1nd9_A Translation initiation 41.5 21 0.00073 21.4 2.8 25 148-172 2-26 (49)
208 3hug_A RNA polymerase sigma fa 41.4 39 0.0013 23.1 4.6 28 146-173 51-78 (92)
209 3ulq_B Transcriptional regulat 40.4 59 0.002 22.5 5.4 38 135-174 33-70 (90)
210 3oou_A LIN2118 protein; protei 40.4 47 0.0016 23.3 5.0 26 147-172 20-45 (108)
211 4a5n_A Uncharacterized HTH-typ 40.1 1.1E+02 0.0039 22.8 8.0 42 146-187 37-79 (131)
212 3oio_A Transcriptional regulat 39.6 44 0.0015 23.6 4.8 26 147-172 22-47 (113)
213 3hrs_A Metalloregulator SCAR; 39.2 1.5E+02 0.005 23.7 8.7 47 142-191 14-60 (214)
214 2hin_A GP39, repressor protein 38.6 42 0.0014 22.6 4.2 21 151-171 13-33 (71)
215 2o8x_A Probable RNA polymerase 38.0 74 0.0025 19.9 5.4 29 146-174 29-57 (70)
216 1ku9_A Hypothetical protein MJ 37.3 1.1E+02 0.0038 21.8 9.3 41 147-187 40-80 (152)
217 1p4w_A RCSB; solution structur 37.2 65 0.0022 22.8 5.3 28 147-174 48-75 (99)
218 1rr7_A Middle operon regulator 37.1 87 0.003 23.5 6.3 64 108-174 55-118 (129)
219 3fx3_A Cyclic nucleotide-bindi 36.6 1E+02 0.0034 24.2 7.0 38 149-191 179-216 (237)
220 2ao9_A Phage protein; structur 36.5 47 0.0016 26.1 4.7 43 128-170 26-70 (155)
221 1b4a_A Arginine repressor; hel 36.4 45 0.0015 25.8 4.6 41 132-172 3-48 (149)
222 3df8_A Possible HXLR family tr 36.0 1.2E+02 0.004 21.6 9.0 62 128-191 22-84 (111)
223 1o5l_A Transcriptional regulat 35.6 43 0.0015 26.2 4.5 40 148-191 164-203 (213)
224 2bgc_A PRFA; bacterial infecti 35.3 1.6E+02 0.0055 23.1 10.0 40 148-191 169-209 (238)
225 1k78_A Paired box protein PAX5 35.0 83 0.0028 23.2 5.9 44 132-178 35-78 (149)
226 1ldd_A APC2WHB, anaphase promo 35.0 1.1E+02 0.0037 20.9 6.0 37 144-180 18-65 (74)
227 3pvv_A Chromosomal replication 34.8 60 0.002 23.4 4.8 47 90-137 52-98 (101)
228 3ro3_A PINS homolog, G-protein 34.1 37 0.0013 23.6 3.6 36 5-40 2-37 (164)
229 2k9m_A RNA polymerase sigma fa 33.5 36 0.0012 25.7 3.5 26 146-171 37-62 (130)
230 3ez9_A Para; DNA binding, wing 33.4 68 0.0023 28.2 5.9 59 123-181 13-76 (403)
231 1bl0_A Protein (multiple antib 33.0 41 0.0014 24.6 3.7 26 147-172 26-51 (129)
232 4gco_A Protein STI-1; structur 32.8 1.3E+02 0.0044 21.2 8.4 23 17-39 18-40 (126)
233 2pft_A Exocytosis protein; hel 32.5 1.1E+02 0.0039 28.5 7.5 56 117-172 510-566 (571)
234 3mkl_A HTH-type transcriptiona 32.4 69 0.0023 22.9 4.9 25 147-171 22-46 (120)
235 1e0g_A Membrane-bound lytic mu 32.3 35 0.0012 20.1 2.7 18 150-167 12-29 (48)
236 2lfc_A Fumarate reductase, fla 32.1 36 0.0012 26.2 3.4 27 146-172 93-119 (160)
237 1zyb_A Transcription regulator 31.4 54 0.0018 26.0 4.5 41 147-191 185-225 (232)
238 2zkz_A Transcriptional repress 30.9 1.3E+02 0.0045 20.7 7.2 52 130-183 24-75 (99)
239 2kfs_A Conserved hypothetical 30.9 48 0.0017 25.8 3.9 38 147-191 30-68 (148)
240 1mkm_A ICLR transcriptional re 30.7 85 0.0029 25.7 5.7 53 136-191 10-63 (249)
241 2pi2_A Replication protein A 3 30.6 11 0.00036 32.2 0.0 38 147-184 223-261 (270)
242 4gcn_A Protein STI-1; structur 30.4 47 0.0016 23.5 3.7 36 5-40 76-111 (127)
243 1ku3_A Sigma factor SIGA; heli 30.1 60 0.0021 21.0 3.9 28 147-174 29-56 (73)
244 2fq3_A Transcription regulator 29.7 1.6E+02 0.0055 21.4 6.6 60 125-184 43-103 (104)
245 3lmm_A Uncharacterized protein 29.5 66 0.0023 30.4 5.4 41 134-174 430-470 (583)
246 3t72_q RNA polymerase sigma fa 29.3 95 0.0033 22.0 5.1 28 147-174 38-65 (99)
247 2fbk_A Transcriptional regulat 29.3 79 0.0027 24.1 5.0 39 149-187 87-125 (181)
248 3dn7_A Cyclic nucleotide bindi 29.0 58 0.002 24.7 4.2 28 147-174 167-194 (194)
249 2da7_A Zinc finger homeobox pr 28.9 51 0.0017 22.5 3.2 31 147-178 31-61 (71)
250 3mzy_A RNA polymerase sigma-H 28.7 97 0.0033 22.5 5.3 28 146-173 122-149 (164)
251 1jko_C HIN recombinase, DNA-in 28.4 14 0.00047 21.9 0.3 24 148-171 21-44 (52)
252 4i17_A Hypothetical protein; T 28.3 1.9E+02 0.0066 21.8 10.6 100 13-123 8-112 (228)
253 2k5e_A Uncharacterized protein 28.2 76 0.0026 21.3 4.1 36 141-176 32-68 (73)
254 1hqc_A RUVB; extended AAA-ATPa 27.2 2.6E+02 0.0088 22.9 9.5 88 91-178 192-295 (324)
255 2k53_A A3DK08 protein; NESG, C 27.2 63 0.0022 21.9 3.6 28 148-175 38-65 (76)
256 2x48_A CAG38821; archeal virus 27.1 1.1E+02 0.0036 18.4 4.5 24 147-170 30-53 (55)
257 1elr_A TPR2A-domain of HOP; HO 27.0 64 0.0022 21.5 3.8 36 5-40 72-107 (131)
258 4aik_A Transcriptional regulat 27.0 1.9E+02 0.0066 21.4 10.2 40 148-187 46-85 (151)
259 2oa4_A SIR5; structure, struct 26.7 52 0.0018 23.9 3.2 35 139-174 42-76 (101)
260 2zcw_A TTHA1359, transcription 26.5 64 0.0022 24.8 4.0 40 148-191 146-185 (202)
261 1u8b_A ADA polyprotein; protei 25.9 1.3E+02 0.0044 21.8 5.5 42 130-171 75-116 (133)
262 3b02_A Transcriptional regulat 25.7 53 0.0018 25.2 3.4 40 148-191 139-178 (195)
263 2ppx_A AGR_C_3184P, uncharacte 25.3 46 0.0016 23.0 2.7 25 144-168 39-63 (99)
264 3pfi_A Holliday junction ATP-d 25.2 2.9E+02 0.01 22.9 9.1 33 147-179 278-311 (338)
265 1tty_A Sigma-A, RNA polymerase 25.2 79 0.0027 21.4 3.9 28 147-174 37-64 (87)
266 2o03_A Probable zinc uptake re 25.2 1.8E+02 0.0061 21.2 6.2 52 135-187 13-69 (131)
267 1jhf_A LEXA repressor; LEXA SO 25.0 1.3E+02 0.0045 23.5 5.7 29 150-178 27-56 (202)
268 2xrn_A HTH-type transcriptiona 24.9 1.1E+02 0.0037 25.0 5.3 55 135-191 7-62 (241)
269 3dpl_C Cullin-5; ubiquitin, NE 24.9 53 0.0018 29.2 3.6 34 146-179 213-246 (382)
270 2dk5_A DNA-directed RNA polyme 24.8 1.8E+02 0.0061 20.2 6.4 45 137-181 23-69 (91)
271 2v9v_A Selenocysteine-specific 24.7 1.3E+02 0.0046 21.7 5.4 30 149-178 18-47 (135)
272 1p6r_A Penicillinase repressor 24.7 1.2E+02 0.0042 19.8 4.8 45 139-183 14-62 (82)
273 1fc3_A SPO0A; response regulat 24.7 65 0.0022 24.1 3.5 37 151-187 51-87 (120)
274 2pij_A Prophage PFL 6 CRO; tra 24.5 88 0.003 19.5 3.8 20 150-169 15-34 (67)
275 3rkv_A Putative peptidylprolyl 24.4 2E+02 0.0067 20.6 8.8 27 14-40 13-39 (162)
276 2v7f_A RPS19, RPS19E SSU ribos 24.3 2.4E+02 0.0083 21.6 7.9 42 148-191 67-122 (150)
277 1j9i_A GPNU1 DBD;, terminase s 24.1 46 0.0016 21.6 2.3 23 149-171 3-25 (68)
278 1j1v_A Chromosomal replication 24.1 76 0.0026 22.4 3.7 45 90-134 48-92 (94)
279 1nxh_A MTH396 protein; hypothe 23.5 31 0.0011 26.1 1.5 41 129-171 5-45 (126)
280 1whu_A Polynucleotide phosphor 23.2 92 0.0032 22.2 4.0 48 127-178 44-92 (104)
281 1uxc_A FRUR (1-57), fructose r 23.2 65 0.0022 21.0 2.9 21 149-169 1-21 (65)
282 2cw1_A SN4M; lambda CRO fold, 23.1 85 0.0029 20.6 3.5 21 150-170 15-35 (65)
283 3lmm_A Uncharacterized protein 23.1 17 0.0006 34.4 0.0 44 136-179 518-561 (583)
284 1lva_A Selenocysteine-specific 22.2 1.8E+02 0.0062 24.0 6.3 52 128-179 136-188 (258)
285 3eyi_A Z-DNA-binding protein 1 22.1 1.9E+02 0.0065 19.6 5.8 55 135-191 11-66 (72)
286 3ax2_A Mitochondrial import re 21.8 67 0.0023 21.9 2.8 29 16-44 21-49 (73)
287 2djp_A Hypothetical protein SB 21.7 64 0.0022 21.3 2.7 18 150-167 25-42 (77)
288 3sqn_A Conserved domain protei 21.6 78 0.0027 29.0 4.1 58 134-191 18-75 (485)
289 3rkx_A Biotin-[acetyl-COA-carb 21.6 1.4E+02 0.0049 25.7 5.6 39 139-177 8-48 (323)
290 3cuq_A Vacuolar-sorting protei 21.4 1.3E+02 0.0046 25.0 5.2 39 140-178 160-198 (234)
291 2p4w_A Transcriptional regulat 21.4 3.1E+02 0.011 21.8 8.6 54 129-184 11-64 (202)
292 3mky_B Protein SOPB; partition 21.3 1.2E+02 0.004 24.6 4.6 36 135-170 29-64 (189)
293 3u5c_Z RP45, S31, YS23, 40S ri 21.2 1.4E+02 0.0048 21.9 4.6 48 144-191 55-102 (108)
294 2b1e_A Exocyst complex compone 20.9 2.6E+02 0.0088 26.1 7.6 71 102-173 489-563 (564)
295 1or7_A Sigma-24, RNA polymeras 20.8 1.8E+02 0.006 21.9 5.6 28 146-173 154-181 (194)
296 2xzm_8 RPS25E,; ribosome, tran 20.7 1.5E+02 0.0052 22.8 4.9 49 143-191 57-106 (143)
297 1t6s_A Conserved hypothetical 20.5 87 0.003 24.6 3.6 29 147-175 21-51 (162)
298 1ucr_A Protein DSVD; dissimila 20.5 1.2E+02 0.004 21.0 3.8 35 146-180 19-54 (78)
299 1x2m_A LAG1 longevity assuranc 20.2 1.3E+02 0.0044 19.8 3.9 34 138-171 14-51 (64)
300 3kz3_A Repressor protein CI; f 20.2 1.8E+02 0.0063 18.7 5.9 22 147-168 24-45 (80)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-50 Score=372.55 Aligned_cols=222 Identities=34% Similarity=0.631 Sum_probs=181.8
Q ss_pred cccCCchhhhhhhHHHHHHHHchhcCHHHHHHHHhccCCCCCCccccCHhHHHHHHHHHHHHcCChhHHHHccccchhHH
Q psy396 2 SISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLRKKLMHHGVMA 81 (239)
Q Consensus 2 ~~~~~dw~~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~~ 81 (239)
++.||||++++|++++.|++++..|+|++|+++|++++++|+..+.+++.++++|++||++++++|.+++.+|+++++++
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~ 277 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELL 277 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHH
Confidence 46899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHhhhhhhH---HHHHHHHHHhchHHHHHHHHH-HHHhhhccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy396 82 QALHSQYRD---LREYFVSLYDGHYFEFLKCLA-AVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQC 157 (239)
Q Consensus 82 ~~~e~~~p~---l~~li~af~~~~y~~~~~~L~-~~~~~l~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~ 157 (239)
.+++. .|. +.+++.+|+.++|..|++.+. .+...+..|+|+++|++.|+++||.+++.||++||++|+|++||+.
T Consensus 278 ~~l~~-~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~ 356 (429)
T 4b4t_R 278 SLIST-TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASA 356 (429)
T ss_dssp HGGGS-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHH
T ss_pred hhccC-ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHH
Confidence 99987 675 456799999999999988654 5566799999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCccceeecccCCEEEEeccccccCCCCCCCccchhhhhHHHHHHHHhhHHHHHHHHHhhhhh
Q psy396 158 FGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVI 237 (239)
Q Consensus 158 fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~~l~~~~ 237 (239)
||+|++++|++|++||.+|+|+||||+++|+|++ ++ || ++++.|++++++|+.|+||+|||+++|
T Consensus 357 l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~-~~-----------~d---~~~~~y~~~i~~gd~Ll~riqkl~~~i 421 (429)
T 4b4t_R 357 FGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVET-NR-----------PD---NKNAQYHLLVKQGDGLLTKLQKYGAAV 421 (429)
T ss_dssp HTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEE-CC-------------------------------------------
T ss_pred hCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEE-CC-----------CC---chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99 99 999999999999999999999999999
Q ss_pred cC
Q psy396 238 DF 239 (239)
Q Consensus 238 ~~ 239 (239)
|+
T Consensus 422 ~l 423 (429)
T 4b4t_R 422 RL 423 (429)
T ss_dssp --
T ss_pred hh
Confidence 84
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=7e-41 Score=309.20 Aligned_cols=210 Identities=12% Similarity=0.222 Sum_probs=175.3
Q ss_pred CchhhhhhhHHHHHHHHc-hhcCHHHHHHHHhccCCCCCCccccCHhHHHHHHHHHHHHcCChhHHHHccccchhHHHHh
Q psy396 6 GDWSARNKLKAYEGVYCL-AIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLRKKLMHHGVMAQAL 84 (239)
Q Consensus 6 ~dw~~~~kl~~~~Gl~~l-~~~~y~~Aa~~F~~~~~~f~~~e~~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~~~ 84 (239)
+||...+++++++|++++ .+|+|++|+++|++++++|++.+.....++++|++||+|++++|.+++. ++.++.+..|.
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~-~l~~~~~~~~~ 252 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQ-LVSGKLAITYS 252 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHH-HHHSHHHHTTC
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHH-HhccccccccC
Confidence 899999999999999999 9999999999999998888876655567899999999999999999974 66777677775
Q ss_pred hhhhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHH
Q psy396 85 HSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEF 164 (239)
Q Consensus 85 e~~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~ 164 (239)
+++.+++++++.+|.++++..|+++|..+.+.+..|+|+++|+..|+++||.+++.|+++||++|+|++||+.||+|+++
T Consensus 253 ~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~e 332 (394)
T 3txn_A 253 GRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQ 332 (394)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHH
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHH
Confidence 54456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCccceeecccCCEEEEeccccccCCCCCCCccchhhhhHHHHHHHHhhHHHHHHHHHhhhhhc
Q psy396 165 IEKEVARFAAAGRLQCKIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVID 238 (239)
Q Consensus 165 lE~~L~~lI~~g~l~arID~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~~l~~~~~ 238 (239)
+|++|++||.+|+|+|+||+++|+|++ ++ ++ +++..|+++++. ++.++++||
T Consensus 333 vE~~L~~lI~dg~I~a~IDq~~giv~~-~~-----------~~---~r~~~y~~ale~-------l~~ls~vVd 384 (394)
T 3txn_A 333 VEKKLSQMILDKKFSGILDQGEGVLIV-FE-----------ET---PVDKTYERVLET-------IQSMGKVVD 384 (394)
T ss_dssp HHHHHHHHHHTTSSCEEEETTTTEEEE-CC-----------C--------------------------------
T ss_pred HHHHHHHHHHCCCeeEEEcCCCCEEEE-CC-----------Cc---chhhHHHHHHHH-------HHHHHHHHH
Confidence 999999999999999999999999999 88 88 899999999987 666666665
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.6e-25 Score=197.46 Aligned_cols=211 Identities=11% Similarity=0.240 Sum_probs=163.3
Q ss_pred CCchhhhhhhHHHHHHHHchhcCHHHHHHHHhccCCCCCCccc----cCHhHHHHHHHHHHHHcCChhHHHHccccchhH
Q psy396 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYEL----AEFGTIIRYTVLACMIALPRYNLRKKLMHHGVM 80 (239)
Q Consensus 5 ~~dw~~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~----~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~ 80 (239)
++++.-..++....|.++...|+|.+|..+|.+++.+|...+. ........|+++|.+....+.... .++.+++.
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~ 287 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVK-NILNAKYT 287 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHCSSS
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHH-hHHHHHHH
Confidence 4566777889999999999999999999999999776654322 123456899999999998876663 46666655
Q ss_pred HHHhhh-hhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhC
Q psy396 81 AQALHS-QYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFG 159 (239)
Q Consensus 81 ~~~~e~-~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg 159 (239)
..+... +.|.+..++.+|.++++..|...+..+...+..|+++..|+..+.+.++.+++.++++||++|++++||+.||
T Consensus 288 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~ 367 (434)
T 4b4t_Q 288 KETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIG 367 (434)
T ss_dssp STTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHT
T ss_pred HHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhC
Confidence 554322 2578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCccceeecccCCEEEEeccccccCCCCCCCccchhhhhHHHHHHHHhhHHHHHHHHHhhhhhc
Q psy396 160 VSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARVID 238 (239)
Q Consensus 160 ~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~~l~~~~~ 238 (239)
+|++++|++|++||.+|+|+|+||+++|+|++ .+ +. .+...|+.+++. +++|+++||
T Consensus 368 ~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~-~~-----------~~---~~~~~~~~~l~~-------~~~l~~~vd 424 (434)
T 4b4t_Q 368 LDTQQVEGKLSQMILDKIFYGVLDQGNGWLYV-YE-----------TP---NQDATYDSALEL-------VGQLNKVVD 424 (434)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC-C---------------------------------------------
T ss_pred cCHHHHHHHHHHHHhCCCcceecccccCeEee-CC-----------Cc---chhHHHHHHHHH-------HHHHHHHHH
Confidence 99999999999999999999999999999999 77 66 777889988877 677777765
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-24 Score=201.84 Aligned_cols=217 Identities=13% Similarity=0.153 Sum_probs=155.5
Q ss_pred cCCchhhhhhhHHHHHHHHchhcCHHHHHHHHhccCCCCCCccc-cCHhHHHHHHHHHHHHcCChhHHHHccccchhHHH
Q psy396 4 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYEL-AEFGTIIRYTVLACMIALPRYNLRKKLMHHGVMAQ 82 (239)
Q Consensus 4 ~~~dw~~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~-~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~ 82 (239)
..++++.+.+++.+.|.+++.+++|.+|+++|++++.++...+. .....+..|+++|.|++..-. .+..++.......
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~-~~~~ll~~~~~~~ 288 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN-LQNDLIHKIQNDN 288 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS-TTHHHHHSHHHHS
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHhhcc
Confidence 46789999999999999999999999999999999665543221 112345677888887764322 2223343332223
Q ss_pred HhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcch------hHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy396 83 ALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLL------NPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQ 156 (239)
Q Consensus 83 ~~e~~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L------~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~ 156 (239)
.+.. .|.+..++.+|.++++..|...+..+.+.+..|+++ ..|+..|.+.+++.++..+.+||++|++++||+
T Consensus 289 ~~~~-l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~ 367 (445)
T 4b4t_P 289 NLKK-LESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNE 367 (445)
T ss_dssp SCHH-HHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHH
T ss_pred cccc-cHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHH
Confidence 3344 799999999999999999999999999999888887 789999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCccceeecccCCEEEEeccccccCCCCCCCccchhhhhHHHHHHHHhhHHHHHHHHHhhhh
Q psy396 157 CFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSHISEKGDCRSEAPEASLDRGILYQTTVKRGDIFLNRLKKLARV 236 (239)
Q Consensus 157 ~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~r~~~l~~~ 236 (239)
.||+|++++|+.|++||.+|+|+|+||+++|+|+. .+ +. ..+..+++-.+....+.+.+.+.+..
T Consensus 368 lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F-~~-----------~~---~~~~~l~~W~~~i~~l~~~v~k~~~l 432 (445)
T 4b4t_P 368 LLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNF-EK-----------PK---NSSQLLNEWSHNVDELLEHIETIGHL 432 (445)
T ss_dssp HHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC---------------------------------------------
T ss_pred HhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEE-CC-----------CC---ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 54 33 33344444444455555556655555
Q ss_pred h
Q psy396 237 I 237 (239)
Q Consensus 237 ~ 237 (239)
|
T Consensus 433 I 433 (445)
T 4b4t_P 433 I 433 (445)
T ss_dssp -
T ss_pred H
Confidence 4
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.8e-18 Score=158.19 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=146.6
Q ss_pred cccCCchhhhhhhHHH--HHHHHchhcCHHHHHHHHhccCCCCCCccccCHhH---HHHHHHHHHHHcC---ChhHHHHc
Q psy396 2 SISGGDWSARNKLKAY--EGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGT---IIRYTVLACMIAL---PRYNLRKK 73 (239)
Q Consensus 2 ~~~~~dw~~~~kl~~~--~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~~s~~d---i~~Y~~Lc~Las~---~R~elk~~ 73 (239)
+++++||+.+...+.| .|.++...++|..++..++..+++++..+.+++++ ++..+++|+|.+- ++.+|
T Consensus 157 l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eL--- 233 (393)
T 4b4t_O 157 LDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGEL--- 233 (393)
T ss_dssp HHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHH---
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHH---
Confidence 4567899876666555 57788889999999999999977776555566654 4555666777653 34444
Q ss_pred cccchhHHHHhhh-hhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHHHHHHHHHHHHHh--hhhhccc
Q psy396 74 LMHHGVMAQALHS-QYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQIL--QAYRSLS 150 (239)
Q Consensus 74 ll~s~~~~~~~e~-~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~ir~~~l~qyl--~pYs~v~ 150 (239)
+..|.+....+. +.+++.+++.+|..++|.+|.+.+.... ...|++..|...+.+.+|..++.+.+ .||++|+
T Consensus 234 -L~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~---~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~ 309 (393)
T 4b4t_O 234 -LHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQI---SKIPILAQHESFLRQKICLMTLIETVFVKNIRMLS 309 (393)
T ss_dssp -HHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHH---HHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEE
T ss_pred -hCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhh---hhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCc
Confidence 455544443221 2467999999999999999998776553 34589999999999999999999977 5688999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEEecc
Q psy396 151 LKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSH 194 (239)
Q Consensus 151 l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~ 194 (239)
++.||+.+|+|++++|.+++++|.+|.|+|+||+++|+|++ +.
T Consensus 310 f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v-~~ 352 (393)
T 4b4t_O 310 FEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTI-SW 352 (393)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEE-Ee
Confidence 99999999999999999999999999999999999999999 54
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.62 E-value=4.2e-15 Score=125.53 Aligned_cols=167 Identities=15% Similarity=0.164 Sum_probs=135.5
Q ss_pred hhhhHHHHHHHHchhcCHHHHHHHHhccCCCCCCccccCHhHHHHHHHHHHHHcCChhHHHHccccchhH-HHHhhhhhh
Q psy396 11 RNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLRKKLMHHGVM-AQALHSQYR 89 (239)
Q Consensus 11 ~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~-~~~~e~~~p 89 (239)
+.+..-|.|.+++.+++|.+|.+.|.+++...+.........+++|++.|.|+...-. +.++ .++ +. .
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP--------~~~ll~~~-~~-~- 81 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP--------TVELLKKY-HL-M- 81 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE--------CHHHHHHT-TC-G-
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC--------CHHHhhhC-ch-h-
Confidence 4567789999999999999999999999544332223345578999999999975421 1111 222 11 2
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHHHHHHHHHHHHHhh------hhhcccHHHHHHHhC----
Q psy396 90 DLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQ------AYRSLSLKYMAQCFG---- 159 (239)
Q Consensus 90 ~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~ir~~~l~qyl~------pYs~v~l~~mA~~fg---- 159 (239)
.+.++++|+..+|+..|.+.|++++ |.|+..++-.+++.+|..++...++ ||+.|+++.++.+++
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~-----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~ 156 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHE-----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQV 156 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTH-----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhH-----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 3779999999999999999999875 4677777777889999999888887 899999999999995
Q ss_pred --CCHHHHHHHHHHHHHcCccceeecccCCEEEEecc
Q psy396 160 --VSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSH 194 (239)
Q Consensus 160 --~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~ 194 (239)
++.+++|-.|+.||.+|.|+|.||+.+|+++. .+
T Consensus 157 ~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVl-sk 192 (203)
T 3t5x_A 157 EDVDIDEVQCILANLIYMGHVKGYISHQHQKLVV-SK 192 (203)
T ss_dssp TTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEE-CS
T ss_pred CCCCHHHHHHHHHHHHHcCceEEEEcccccEEEE-CC
Confidence 48999999999999999999999999999998 44
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.51 E-value=1e-14 Score=106.76 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=64.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEEecc
Q psy396 125 PHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSH 194 (239)
Q Consensus 125 ~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~ 194 (239)
.|...|.+.+.+.++..|.+||++|+|++||+.||+|++++|++|++||.+|+|+|+||+++|+|+. .+
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f-~~ 75 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF-ET 75 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEE-CC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEe-CC
Confidence 3556677888899999999999999999999999999999999999999999999999999999999 66
No 8
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.8e-12 Score=120.50 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=143.3
Q ss_pred CchhhhhhhHHHHHHHHchhcCHHHHHHHHhccCCCCCCccc--cCHhHHHHHHHHHHHHcCChhHHHHccccchhHHHH
Q psy396 6 GDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYEL--AEFGTIIRYTVLACMIALPRYNLRKKLMHHGVMAQA 83 (239)
Q Consensus 6 ~dw~~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~--~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~~ 83 (239)
....-..+..-|.|..++.+++|.+|.++|..++........ .-...+.+|+++|.|+...-.+. .++..+.+++.
T Consensus 264 ~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r--~lf~q~~l~~~ 341 (523)
T 4b4t_S 264 VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPEL--SFFHQSNMQKS 341 (523)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCH--HHHTTTSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCCh--HHhhchhHHHH
Confidence 344456788899999999999999999999999543322111 22446779999999986542111 23444444332
Q ss_pred hhhhhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCC-H
Q psy396 84 LHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVS-V 162 (239)
Q Consensus 84 ~e~~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s-~ 162 (239)
+ ..+.++.++|..++...|...|+++...+..|--. ..+..+...+....+.+.-.+|++|+++.+|..+|++ +
T Consensus 342 L----~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~ 416 (523)
T 4b4t_S 342 L----LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSE 416 (523)
T ss_dssp H----HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHS
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCH
Confidence 2 22568999999999999999999999998888443 5777888888888999999999999999999999995 6
Q ss_pred HHHHHHHHHHHHcCccceeecccCCEEEEecc
Q psy396 163 EFIEKEVARFAAAGRLQCKIDSVAGNVVTTSH 194 (239)
Q Consensus 163 ~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~ 194 (239)
+++|.-+++||.+|.|+|.||+.+|.+.- ++
T Consensus 417 eeaE~iVAkmI~dG~I~A~Idh~~g~v~s-ke 447 (523)
T 4b4t_S 417 QTVEYMVSRAIRDGVIEAKINHEDGFIET-TE 447 (523)
T ss_dssp SCHHHHHHHHHHHTSSCCEECTTTCCEEC-CS
T ss_pred HHHHHHHHHHHHcCCceEEEecCCCEEEe-Cc
Confidence 78999999999999999999999999888 54
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.28 E-value=4.2e-11 Score=112.20 Aligned_cols=177 Identities=12% Similarity=0.072 Sum_probs=132.7
Q ss_pred hhhhhHHHHHHHHchhcCHHHHHHHHhccCCC-CCCcc------ccCHhHHHHHHHHHHHHcCChhHHHHccccchhHHH
Q psy396 10 ARNKLKAYEGVYCLAIRQYCRAAELFVDVVPT-FESYE------LAEFGTIIRYTVLACMIALPRYNLRKKLMHHGVMAQ 82 (239)
Q Consensus 10 ~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~~-f~~~e------~~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~ 82 (239)
-+.+..-|.|.+++.+++|.+|.+.|.+++.. ... + ......+++|++.+.|+...-.+. .++..+..
T Consensus 218 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~-~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~--~ll~k~~~-- 292 (455)
T 3t5v_B 218 QQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL-PLTNQAITRNGTRILNYMIPTGLILGKMVKW--GPLRPFLS-- 292 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHTTCCBCH--HHHGGGSC--
T ss_pred ceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc-cccchhhhhHHHHHHHHHHHHHHHcCCCCCH--HHHcccch--
Confidence 34567789999999999999999999999433 111 1 122356899999999997532111 12222110
Q ss_pred HhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcc---hhHhHH-HHHHHHHHHHHHHHhhhh--hcccHHHHHH
Q psy396 83 ALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPL---LNPHYR-HYVQEMRLRAYKQILQAY--RSLSLKYMAQ 156 (239)
Q Consensus 83 ~~e~~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~---L~~h~~-~l~~~ir~~~l~qyl~pY--s~v~l~~mA~ 156 (239)
-+. .|.+.+++.|+..+++..|.++|++++..+..|-. +-..++ ..++++..+++..+.-|| +.|+++.++.
T Consensus 293 -~~L-~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~ 370 (455)
T 3t5v_B 293 -QET-IDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIER 370 (455)
T ss_dssp -HHH-HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHH
T ss_pred -HHH-HHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHH
Confidence 112 34467899999999999999999999876555533 223332 346666667777788889 8999999999
Q ss_pred HhC---------------------CCHHHHHHHHHHHHHcCccceeecccCCEEEEecc
Q psy396 157 CFG---------------------VSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSH 194 (239)
Q Consensus 157 ~fg---------------------~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~ 194 (239)
+++ ++.+++|-.|+.||.+|.|+|.||+.+++++. .+
T Consensus 371 aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVl-SK 428 (455)
T 3t5v_B 371 VLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVV-KK 428 (455)
T ss_dssp HHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEE-CC
T ss_pred HHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEE-CC
Confidence 997 58899999999999999999999999999999 55
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.79 E-value=4.9e-08 Score=79.96 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHccccchhHHHHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHH
Q psy396 52 TIIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYV 131 (239)
Q Consensus 52 di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~~~e~~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~ 131 (239)
..+.=++..+|.+-+--... .++..|.+...-+.+.+++.+++..|..++|.+|...-. .+ |-|. ..+.
T Consensus 24 ~~a~~li~~Al~~p~vf~F~-eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~----~~---p~L~---~~~~ 92 (169)
T 3chm_A 24 EALGPLIIEATSHPSLFAFS-EILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNAT----RL---PHLS---PDQI 92 (169)
T ss_dssp GGHHHHHHHHHHCTTCCCCH-HHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGG----GS---CCCC---HHHH
T ss_pred HHHHHHHHHHhcCCCeeehH-HHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHH----hC---cchH---HHHH
Confidence 34555666777764432221 245556554432222467999999999999999987421 11 2343 7888
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHhCCC-HHHHHHHHH-HHHHcCccceeecccCCEEEEecc
Q psy396 132 QEMRLRAYKQILQAYRSLSLKYMAQCFGVS-VEFIEKEVA-RFAAAGRLQCKIDSVAGNVVTTSH 194 (239)
Q Consensus 132 ~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s-~~~lE~~L~-~lI~~g~l~arID~~~~~l~~~~~ 194 (239)
+.||.-.+...+.-.+.++.+.+++.++++ ++++|.++. +.|..|-|.||||++++++++ +.
T Consensus 93 ~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V-~~ 156 (169)
T 3chm_A 93 LKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEV-PF 156 (169)
T ss_dssp HHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEE-EE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEE-Ee
Confidence 999999999999999999999999999999 999999999 999999999999999999999 54
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=97.47 E-value=0.0025 Score=54.06 Aligned_cols=113 Identities=9% Similarity=0.079 Sum_probs=80.2
Q ss_pred HhHHHHHHHHHHHHcCChhHHHHcc--ccchhHHHHhhhhhhH---HHHHHHHHHhchHHHHHHHHHHHHhhhccCcchh
Q psy396 50 FGTIIRYTVLACMIALPRYNLRKKL--MHHGVMAQALHSQYRD---LREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLN 124 (239)
Q Consensus 50 ~~di~~Y~~Lc~Las~~R~elk~~l--l~s~~~~~~~e~~~p~---l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~ 124 (239)
...+..|-+|.-|.+.+..++..-+ +...+. +.. .|. ..++-+++..++|..|++.+.... .+..+
T Consensus 96 ~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~---~~~-~~~I~~al~l~~al~~GnY~kff~l~~~~p-----~~~~~ 166 (229)
T 4b0z_A 96 MGLVTGLNLLYLLSENRIAEFHTALESVPDKSL---FER-DPYVEWVISLEQNVMEGAFDKVASMIRSCN-----FPEFS 166 (229)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTH---HHH-CHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CGGGH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHhcChHHH---hhc-CHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-----cchHH
Confidence 3457777778777776665543211 111111 112 343 455677889999999999887641 23446
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCC-HHHHHHHHHH
Q psy396 125 PHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVS-VEFIEKEVAR 171 (239)
Q Consensus 125 ~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s-~~~lE~~L~~ 171 (239)
..++.++..+|..++.-..++|++|+++.+++.+|.+ .+++++.+.+
T Consensus 167 ~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 167 YFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 6778999999999999999999999999999999995 5666666655
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.46 E-value=0.00037 Score=48.71 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEEecc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSH 194 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~~~~ 194 (239)
+.+++|++..+.|.|+.+|..||++.+.+-+.|..|..+|+|.|-||-.-+.|++ .+
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyI-s~ 66 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYI-TP 66 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEEC-CC
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEe-cH
Confidence 4568999999999999999999999999999999999999999999999999999 54
No 13
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=95.94 E-value=0.036 Score=46.90 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHc--cccchhHHHHhhhhhhHHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHH
Q psy396 52 TIIRYTVLACMIALPRYNLRKK--LMHHGVMAQALHSQYRDLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRH 129 (239)
Q Consensus 52 di~~Y~~Lc~Las~~R~elk~~--ll~s~~~~~~~e~~~p~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~ 129 (239)
+++.-.+|.+|+.++-.+.-.- ++. +.+. .+.....+..+-+....|+|..|.+.+.. ++=+.+.+..
T Consensus 64 ~ii~~iLlk~L~~~p~~DF~~~l~LIp-~~~~--~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~g 133 (226)
T 1rz4_A 64 TVTAQILLKALTNLPHTDFTLCKCMID-QAHQ--EERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGITG 133 (226)
T ss_dssp HHHHHHHHHHHHTTTSTHHHHHHHTSC-HHHH--TSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTT
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhCC-hhhh--cCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhH
Confidence 4555566778877765554221 221 2221 01113446667778889999999988754 2334455567
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHhC-CCHHHHHHHHHH
Q psy396 130 YVQEMRLRAYKQILQAYRSLSLKYMAQCFG-VSVEFIEKEVAR 171 (239)
Q Consensus 130 l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg-~s~~~lE~~L~~ 171 (239)
|.+.+|..+..-.-..|++|+++.+++.+| ++.+++++++.+
T Consensus 134 f~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~ 176 (226)
T 1rz4_A 134 FEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSK 176 (226)
T ss_dssp HHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 889999999999999999999999999995 888888888877
No 14
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.60 E-value=0.019 Score=40.61 Aligned_cols=42 Identities=10% Similarity=0.211 Sum_probs=39.4
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
..|.++++....++++.+|+.||+|.+.|...|..|...|.|
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 457888999999999999999999999999999999999987
No 15
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.33 E-value=0.025 Score=40.88 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=39.8
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
..|.++++....|+++.+|+.||+|.+.|...|..|...|.|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4578889999999999999999999999999999999999884
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.13 E-value=0.043 Score=38.64 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhh------hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 135 RLRAYKQILQAY------RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 135 r~~~l~qyl~pY------s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
|.+.|.+|++.+ -.++...||++||+|...+...|..|-..|.|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 556677888887 789999999999999999999999999999883
No 17
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.36 Score=41.81 Aligned_cols=120 Identities=15% Similarity=0.074 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHccccchhHHHHhhhhhhH---HHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHH
Q psy396 52 TIIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYRD---LREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYR 128 (239)
Q Consensus 52 di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~~~e~~~p~---l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~ 128 (239)
.+.-|-+|.-|.+.+..++-..+-.=+...+-+.. .|. ..++-+++.+++|..|++.+..-. .. -+..+-.++
T Consensus 104 e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~-d~~Ik~al~le~al~eGnY~kff~l~~~~~-~p--~~~~~~f~d 179 (274)
T 4b4t_T 104 KLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLED-DSLLSYPIKLDRWLMEGSYQKAWDLLQSGS-QN--ISEFDSFTD 179 (274)
T ss_dssp HHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTC-CHHHHHHHHHHHHHHHTCSHHHHHHHHTCT-TC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhc-ChHHHHHHHHHHHHHcCCHHHHHHHHhcCC-CC--cHHHHHHHH
Confidence 46667677777776666654321100100000111 343 445667788999999999876531 10 012345568
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 129 HYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 129 ~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
.++..+|..++.-..++|.+++++.+++.++.+.+ +++.+++.....
T Consensus 180 ~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~---~e~~~F~~~~gW 226 (274)
T 4b4t_T 180 ILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNE---KETEKFALERNW 226 (274)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSH---HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCH---HHHHHHHHHcCC
Confidence 99999999999999999999999999999999653 366677766543
No 18
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.14 E-value=0.35 Score=34.16 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=44.6
Q ss_pred HHHHHHHhhhhh---cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 136 LRAYKQILQAYR---SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 136 ~~~l~qyl~pYs---~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.+.|++++.... .++...+|+.+|+|...|.+.|.+|-.+|.|.- ++.-.+.-.+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~-~g~~~~~W~i 69 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK-EAGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ESSSSCEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-cCCCCCeeEE
Confidence 344567888777 899999999999999999999999999999943 3444566565
No 19
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.23 E-value=0.94 Score=31.40 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=43.7
Q ss_pred HHHHHHhhhhh---cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 137 RAYKQILQAYR---SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 137 ~~l~qyl~pYs---~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+.|..++..-. .++...||+.+|+|...|...|.+|..+|.|...- .-.+.-.+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g-~~~~~W~i 73 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC-SSSCEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCceEe
Confidence 44568888878 89999999999999999999999999999996543 33344444
No 20
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=90.52 E-value=0.53 Score=31.68 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhh-hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce
Q psy396 134 MRLRAYKQILQAY-RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 134 ir~~~l~qyl~pY-s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a 180 (239)
.+.+ ++++|..- ..++...+|+.+|+|...+.+.|..|..+|-|..
T Consensus 11 ~~~~-IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 11 LEQK-ILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHH-HHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHH-HHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4444 45555544 4699999999999999999999999999998743
No 21
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=89.59 E-value=0.66 Score=34.33 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+++.|+..+...-+.|=..+ +...+|+.||+|...+.+.+..|..+|-|..+ +..|+.+.
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 46788999999999899999999 89999999999999999999999999987543 55666666
No 22
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=89.30 E-value=0.9 Score=33.21 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=49.2
Q ss_pred HHHHH--HHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 130 YVQEM--RLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 130 l~~~i--r~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++.+ +.+++ ..+.|-..+ +...+|+.||+|...|.+.|..|..+|-|..+-....|+.+.
T Consensus 23 ~y~~l~i~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 23 SYSELEAIEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp CHHHHHHHHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 34445 77777 788888887 999999999999999999999999999986654334566665
No 23
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=89.14 E-value=3.4 Score=28.66 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
..|.+++ .++.....++...+|+.+|+|...+-.-|..|...|-+...-+.
T Consensus 16 ~~~~~iL-~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 16 PVRLGIM-IFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHH-HHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred hHHHHHH-HHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3344444 34444567999999999999999999999999999999876643
No 24
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=89.01 E-value=0.72 Score=31.77 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=36.2
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a 180 (239)
+.+++.....++...+|+.||+|...+-..|..|...|-+..
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 445555556799999999999999999999999999999863
No 25
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=88.21 E-value=0.73 Score=34.89 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-...+++.|+..++..-+.|=..+ +...+|+.||+|...|.+.+..|..+|-|.. -+..|+.+.
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~ 76 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFIT 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEc
Confidence 346788999999999899999999 9999999999999999999999999998844 345677666
No 26
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=88.14 E-value=0.73 Score=40.74 Aligned_cols=64 Identities=14% Similarity=0.290 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHhhhccCcchhHhH-HHHHHHHHHHHHHHHhhhhh----cccHHHHHHHhCCC-HHHHHHHH
Q psy396 101 GHYFEFLKCLAAVEQDMKRDPLLNPHY-RHYVQEMRLRAYKQILQAYR----SLSLKYMAQCFGVS-VEFIEKEV 169 (239)
Q Consensus 101 ~~y~~~~~~L~~~~~~l~~D~~L~~h~-~~l~~~ir~~~l~qyl~pYs----~v~l~~mA~~fg~s-~~~lE~~L 169 (239)
++|..||+.+.. ..-+||..++ +.++..+|.+++..+..+|. .++++.+++.+|.+ .+++++.+
T Consensus 177 gNY~rFFrL~~~-----~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQS-----PSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTC-----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhc-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 689999997663 1246776665 56789999999999999994 89999999999995 45544444
No 27
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=87.90 E-value=0.94 Score=34.42 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-...+++.|+..++..-+.|=..+ +...+|+.||+|...|.+-+..|-.+|-+..+ +..|+.+.
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~ 79 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIA 79 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEe
Confidence 346789999999999999999999 79999999999999999999999999998654 45577665
No 28
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.53 E-value=5.5 Score=27.70 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=37.7
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
..++.....++...+|+.+|++...+-..|..|...|-+...-+.
T Consensus 26 l~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 26 YSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 344444567999999999999999999999999999999765554
No 29
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=87.36 E-value=0.94 Score=34.12 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-...+++.|+..+...-+.|=..+ +...+|+.||+|...|.+.+..|..+|-|..+ +..|+.+.
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 78 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVT 78 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEe
Confidence 346788999999999899999999 59999999999999999999999999988553 44576666
No 30
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=85.69 E-value=1.7 Score=33.32 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
+.++..+.....++...+|+.+|+|...+-+.+.+|...|-+. +.+|+.
T Consensus 12 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 3556777777899999999999999999999999999999884 456654
No 31
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=85.57 E-value=1.8 Score=33.58 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=41.5
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
+.+++++.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 3456677777789999999999999999999999999999885 466654
No 32
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=85.43 E-value=1.4 Score=33.52 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+++.|+..++..-+.|=..+ +...+|+.||+|...|.+.+..|..+|-+.. -+..|+.+.
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 46788889999988889998999 8999999999999999999999999998854 355566666
No 33
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=85.28 E-value=8.2 Score=27.49 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
.|.+++. ++ ....++...+|+.+|+|...+-..|..|...|-+..+-+.
T Consensus 22 ~r~~IL~-~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g 70 (114)
T 2oqg_A 22 TRWEILT-EL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG 70 (114)
T ss_dssp HHHHHHH-HH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH-HH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC
Confidence 3444443 44 3456999999999999999999999999999999776553
No 34
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=85.22 E-value=2 Score=32.68 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
+.+...+.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 8 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 3556677777899999999999999999999999999999885 456655
No 35
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=85.07 E-value=1.9 Score=30.27 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHH-HHHHHHHHHHHcCccc
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVE-FIEKEVARFAAAGRLQ 179 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~-~lE~~L~~lI~~g~l~ 179 (239)
..+.+++ +|+.-....+...+|+.+|++.. .|.+-|..|-.+|.+.
T Consensus 11 ~~~~~IL-~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKIC-DYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHH-HHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHH-HHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 5556655 99999999999999999999999 9999999999999996
No 36
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=84.91 E-value=1.9 Score=33.08 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=41.8
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
+.++..+.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 3456667777899999999999999999999999999999885 467765
No 37
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.86 E-value=7.6 Score=26.79 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.|.+++ .++.....++...+|+.+|+|...+-..|..|...|-+...-|.....+..
T Consensus 25 ~~~~il-~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 25 KRLLIL-CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp HHHHHH-HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEE
T ss_pred HHHHHH-HHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 344444 455555579999999999999999999999999999997665544333444
No 38
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=84.57 E-value=0.67 Score=33.66 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=48.8
Q ss_pred CcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcccee
Q psy396 120 DPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181 (239)
Q Consensus 120 D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ar 181 (239)
+|.+..-+..++...+.+++...+.|=..++...+|+.||+|...+-+-|..|...|-+..+
T Consensus 5 ~~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 5 EDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44445555555556666777666677657999999999999999999999999999998654
No 39
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=84.43 E-value=1.5 Score=36.52 Aligned_cols=66 Identities=20% Similarity=0.212 Sum_probs=56.5
Q ss_pred hHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 124 NPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 124 ~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
......+++.||..++...+.|=..++...+|+.||+|...|-+.|..|-.+|-+.-+ +..|+.+.
T Consensus 25 ~s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~--~~~G~~V~ 90 (237)
T 3c7j_A 25 HLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE--THKGAVVA 90 (237)
T ss_dssp GGHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEe
Confidence 3555679999999999999999999999999999999999999999999999987543 34565544
No 40
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=84.09 E-value=0.33 Score=35.06 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+++.+|.+++...+.|=..+ +...+|+.||+|...+.+.|..|...|-+..+ ...|+.+.
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~ 76 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVE 76 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEc
Confidence 46788888988888788888888 99999999999999999999999999988543 33355444
No 41
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=82.56 E-value=5.6 Score=30.46 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=38.8
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce--eecccCCEEEEecc
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC--KIDSVAGNVVTTSH 194 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a--rID~~~~~l~~~~~ 194 (239)
.-.+.+.+|+.+|+++.++.+.|.+|+..|-|.= +.|..++.... +.
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~-yd 98 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEK-YS 98 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEE-EE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEE-ee
Confidence 4578999999999999999999999999998854 66776555555 44
No 42
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=82.32 E-value=0.93 Score=34.42 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 130 YVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 130 l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
=.++.|.-++.|++.|=..-.|++++-.=-=-...||+.|..|...|+|.++||
T Consensus 34 ~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 34 REAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 345778889999999988877777764322233589999999999999999886
No 43
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=82.26 E-value=2.5 Score=33.53 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=41.3
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
+.+++.+....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 3456667767799999999999999999999999999999884 456653
No 44
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.96 E-value=10 Score=27.63 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=41.0
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
+..++.....++...+|+.+|++...+-..|.+|...|-+.-..|..++-
T Consensus 41 iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 41 VIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 34444445679999999999999999999999999999998777665553
No 45
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=81.55 E-value=2.8 Score=34.13 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcC
Q psy396 130 YVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAG 176 (239)
Q Consensus 130 l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g 176 (239)
...+=|.+.|.++++....|+.+.+|+.||+|.+.+-..|.+|=.-+
T Consensus 8 m~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 8 LKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred cCHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 34567889999999999999999999999999999999998775544
No 46
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.00 E-value=3.3 Score=32.73 Aligned_cols=48 Identities=8% Similarity=0.161 Sum_probs=40.8
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
.++..+..-..++...+|+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 456666667789999999999999999999999999999884 466655
No 47
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=80.88 E-value=2.7 Score=32.82 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=43.2
Q ss_pred HHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 136 LRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 136 ~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
.+.+++.++.-.+++...+|+.+|+|...+-+.|.+|..+|-|. +.+|+.
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 34567778877899999999999999999999999999999874 677764
No 48
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=80.66 E-value=6.1 Score=28.91 Aligned_cols=62 Identities=8% Similarity=0.143 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 128 RHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 128 ~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..|-+..|.+++....+ ..++...+|+.+|+|...+-.-|..|...|-+..+-+........
T Consensus 13 ~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l 74 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAI 74 (118)
T ss_dssp HHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEE
Confidence 34444556665544432 578999999999999999999999999999998877743333333
No 49
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=80.55 E-value=12 Score=26.01 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=42.3
Q ss_pred HHHHhhhhhcccHHHH----HHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 139 YKQILQAYRSLSLKYM----AQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 139 l~qyl~pYs~v~l~~m----A~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+..++.....++...+ |+.+|++...+-..|.+|...|-+.-..|.....+..
T Consensus 13 iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~L 69 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYL 69 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEE
Confidence 3444444567889999 9999999999999999999999998877875555555
No 50
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=80.30 E-value=2.4 Score=29.99 Aligned_cols=46 Identities=7% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a 180 (239)
..+.+++ ++|..-. ++...+|+.+|+|...+.+-|..|-.+|-|..
T Consensus 17 ~~~~~IL-~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAI-KTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHH-HHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHH-HHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444443 6777655 99999999999999999999999999998854
No 51
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=80.30 E-value=3 Score=31.89 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=40.0
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeecc
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDS 184 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~ 184 (239)
.++..+.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|+
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 455667767799999999999999999999999999999884 45665
No 52
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=80.21 E-value=3.6 Score=30.78 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=37.5
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
+.++..+.....++...+|+.+|+|...+-+.|.+|...|-+.
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 3455677777789999999999999999999999999999885
No 53
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.39 E-value=18 Score=29.87 Aligned_cols=106 Identities=10% Similarity=0.040 Sum_probs=58.4
Q ss_pred HHHHHHchhcCHHHHHHHHhccCCCCCCcccc--CHhHHHHHHHHHHHHcCChhHHHH----ccccchhHHHHhhhhhhH
Q psy396 17 YEGVYCLAIRQYCRAAELFVDVVPTFESYELA--EFGTIIRYTVLACMIALPRYNLRK----KLMHHGVMAQALHSQYRD 90 (239)
Q Consensus 17 ~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~~--s~~di~~Y~~Lc~Las~~R~elk~----~ll~s~~~~~~~e~~~p~ 90 (239)
--|..++..|+|.+|...|-.+.......... +..+...-.++|-+...+-.+-.. -+--+|.+....+ ...
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~--~~~ 240 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE--SNF 240 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH--HHH
Confidence 34778888999999999999986544322111 122233334455554433322111 1111122211111 123
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhhccCcchh
Q psy396 91 LREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLN 124 (239)
Q Consensus 91 l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~ 124 (239)
+..++.++...+...|.+.+..+...+..||...
T Consensus 241 l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 241 LKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 5667788877788888888888877777777553
No 54
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=79.31 E-value=4.4 Score=30.86 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=40.3
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc---eeeccc
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ---CKIDSV 185 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~---arID~~ 185 (239)
.++.++.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 455666666789999999999999999999999999999884 456654
No 55
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=79.17 E-value=16 Score=26.50 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=41.4
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
+..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|+.++-
T Consensus 34 iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 34 CLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp HHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 33444445789999999999999999999999999999998777766553
No 56
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=78.84 E-value=5.2 Score=27.89 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccC
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVA 186 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~ 186 (239)
+..++..++.....++...+|+.+|+|...+-..|..|...|-+...-+..+
T Consensus 23 ~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 23 DVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 3444555555467899999999999999999999999999999976655443
No 57
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=78.07 E-value=3.5 Score=33.58 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-.+.+++.|+..++..-+.|=..++-..+|+.||+|-.-|-+-|..|-.+|-+..+ +..|+.+.
T Consensus 17 ~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~ 80 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIR 80 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEe
Confidence 34678999999999999999999999999999999999999999999999998654 55677666
No 58
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=78.05 E-value=0.48 Score=33.64 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
|..++.|++.|=..-.|++++-.=-=-...||+.|.+|...|+|.++||
T Consensus 7 r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 7 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp SSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4556778888877767766654322223589999999999999999886
No 59
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=77.99 E-value=12 Score=26.80 Aligned_cols=42 Identities=5% Similarity=0.118 Sum_probs=38.3
Q ss_pred hhcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 146 YRSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 146 Ys~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
....+...+|+.+ |+|...+-..|..|...|-|..+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4678999999999 99999999999999999999988887665
No 60
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=77.89 E-value=6.2 Score=27.61 Aligned_cols=48 Identities=10% Similarity=0.108 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcccee
Q psy396 131 VQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181 (239)
Q Consensus 131 ~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ar 181 (239)
.+..|.+++..+ ...++...+|+.+|+|...+-..|..|...|-+..+
T Consensus 29 ~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 29 TNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp SCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334455544433 356899999999999999999999999999998653
No 61
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=77.85 E-value=4.1 Score=30.92 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=40.8
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce---eeccc
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC---KIDSV 185 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a---rID~~ 185 (239)
.++..+.....++...+|+.+|+|...+-..|.+|...|-|.. .+|+.
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 4556777677899999999999999999999999999998853 67764
No 62
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=77.80 E-value=17 Score=28.40 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=34.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++...+|..+|++.+.+-+.+.+|-.+|-|. ...+.|.+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i 208 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITI 208 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEE
Confidence 67889999999999999999999999988774 34677777
No 63
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=77.76 E-value=3.1 Score=29.97 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHH
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVA 170 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~ 170 (239)
-|...+.+++.+.. +++..+|+.+|+|...|-..|.
T Consensus 7 ~R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 7 ERTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 36677888888866 9999999999999999888774
No 64
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=77.15 E-value=18 Score=26.44 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=39.8
Q ss_pred HHHHhhhh--hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 139 YKQILQAY--RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 139 l~qyl~pY--s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
+..++... ..++...+|+.+|++...+-..|.+|...|-+.-+.|+.++
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 34444445 67999999999999999999999999999999776665554
No 65
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=77.13 E-value=16 Score=25.38 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..|.+++ .++.- ..++...+|+.+|+|...+-.-|..|...|-+..+-+........
T Consensus 23 ~~r~~Il-~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 23 ERRLQIL-CMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp HHHHHHH-HHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEE
T ss_pred HHHHHHH-HHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 3455554 44444 689999999999999999999999999999998776555444444
No 66
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.10 E-value=19 Score=26.45 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.++.....++...+|+.+|++...+-..|..|...|-+.-.-|+.++
T Consensus 49 ~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~ 95 (150)
T 2rdp_A 49 QWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDR 95 (150)
T ss_dssp HHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred HHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCc
Confidence 33334567999999999999999999999999999999877766555
No 67
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=76.53 E-value=19 Score=26.04 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-..|..++
T Consensus 44 L~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 44 LVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp HHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred HHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 334444458999999999999999999999999999999877766555
No 68
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=76.44 E-value=13 Score=27.40 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=37.1
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.+..++.... ++...+|+.+|++...+-.-|.+|...|-+.-.-|+.++
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~ 90 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDA 90 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 3455666667 999999999999999999999999999999877765555
No 69
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=76.36 E-value=8.7 Score=27.64 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeeccc
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSV 185 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~ 185 (239)
..|.+++..+.+ ..++...+|+.+|+|...+-..|..|...|-+..+-+..
T Consensus 25 ~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 25 GRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp STTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345454443332 578999999999999999999999999999998765543
No 70
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=76.20 E-value=3.3 Score=33.62 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.+.+++.||..++..-+.|=..++-..+|+.||+|-.-|-+-|..|-.+|-+..+ +..|+.+.
T Consensus 14 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 76 (218)
T 3sxy_A 14 RTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVT 76 (218)
T ss_dssp CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEc
Confidence 3678999999999999999999999999999999999999999999999999654 55576666
No 71
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=75.89 E-value=20 Score=26.22 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=39.7
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++...+|+.+|+|...+-..|.+|...|-+.-.-|+.++
T Consensus 35 L~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 35 LVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp HHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 334444557999999999999999999999999999999877766544
No 72
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=75.66 E-value=20 Score=25.93 Aligned_cols=47 Identities=6% Similarity=0.121 Sum_probs=39.6
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.++.....++...+|+.+|++...+-..|.+|...|-+.-..|+.++
T Consensus 41 ~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 41 CSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp HHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred HHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccC
Confidence 33444567899999999999999999999999999999877776655
No 73
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=75.51 E-value=5 Score=33.29 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+++.|+..++..-+.|=..++-..+|+.||+|-.-|-+-|..|-.+|-+..+ +..|+.+.
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 92 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHE--LNRGVFVR 92 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEEe
Confidence 4688999999999999999999999999999999999999999999999998643 45566665
No 74
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=75.31 E-value=21 Score=26.02 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=40.2
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
+..++. ...++...+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 42 iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 42 VLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 344455 678999999999999999999999999999999876665544
No 75
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=75.27 E-value=21 Score=25.99 Aligned_cols=48 Identities=19% Similarity=0.105 Sum_probs=40.2
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 39 L~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 39 LQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp HHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCC
Confidence 334444567999999999999999999999999999999887776655
No 76
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=75.22 E-value=22 Score=26.07 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++.+.+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 43 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~Dr 90 (142)
T 3ech_A 43 LKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQ 90 (142)
T ss_dssp HHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 344444557999999999999999999999999999999777766555
No 77
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=74.82 E-value=22 Score=25.86 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=35.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 8999999999999999999999999999999877766655
No 78
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=74.48 E-value=16 Score=25.39 Aligned_cols=43 Identities=12% Similarity=0.312 Sum_probs=35.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
++...+|+.+|++...+-..|..|...|-+...-|.-...+..
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~L 73 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRL 73 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEE
Confidence 9999999999999999999999999999994444444445555
No 79
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.42 E-value=11 Score=23.97 Aligned_cols=50 Identities=10% Similarity=0.214 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHh-----CCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCF-----GVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~f-----g~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
-|...+..++..-..++...+++.| ++|...|-..|..+ |.+ ++...+|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~ 59 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGS 59 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCc
Confidence 4667777888888889999999999 99999999999843 544 45444443
No 80
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=74.17 E-value=24 Score=26.82 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=39.5
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.++.....++...+|+.+|++...+-..|.+|...|-|.-..|..++
T Consensus 52 ~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 52 VILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred HHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 33434567999999999999999999999999999999877776555
No 81
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=73.83 E-value=5.2 Score=32.74 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-.+.+++.|+..++..-+.|=..+ +-..+|+.||+|-..|-+-|..|..+|-+.-+ +..|+.+.
T Consensus 8 ~~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~--~g~G~~V~ 72 (239)
T 1hw1_A 8 PAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ--HGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--cCCCcEee
Confidence 346788999999999999999999 79999999999999999999999999988643 44566665
No 82
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=73.76 E-value=21 Score=26.03 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.+..++.....++...+|+.+|++...+-..|.+|...|-+.-+-|+.++
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 34455555567999999999999999999999999999999877765444
No 83
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=73.57 E-value=16 Score=26.49 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 39 L~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 39 IQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp HHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 344444567999999999999999999999999999999776665544
No 84
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=73.46 E-value=11 Score=27.36 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=40.1
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
+..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 36 iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 36 ILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 3344444567999999999999999999999999999999877665444
No 85
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=73.44 E-value=25 Score=25.94 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=38.3
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++.....+++..+|+.+|+|...+-..|..|...|-+.-+ .++.+..
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~L 62 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVL 62 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEE
T ss_pred HHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEE
Confidence 33444567999999999999999999999999999988654 2355666
No 86
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=73.41 E-value=24 Score=25.77 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=39.1
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
.++.....++...+|+.+|++...+-..|.+|...|-+.-.-|+.++ .+..
T Consensus 44 ~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~L 97 (143)
T 3oop_A 44 EGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSL 97 (143)
T ss_dssp HHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEE
T ss_pred HHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeE
Confidence 34444468999999999999999999999999999999776655444 5555
No 87
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=73.40 E-value=24 Score=26.14 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=40.0
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce--eecccCC---EEEE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC--KIDSVAG---NVVT 191 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a--rID~~~~---~l~~ 191 (239)
.++.....++...+|+.+|++...+-..|.+|...|-+.- +-|+.++ .+..
T Consensus 48 ~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~L 103 (154)
T 2qww_A 48 NVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKL 103 (154)
T ss_dssp HHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEE
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEE
Confidence 3344445799999999999999999999999999999987 6666555 5555
No 88
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=73.39 E-value=0.55 Score=33.25 Aligned_cols=49 Identities=27% Similarity=0.248 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
|..++.|++.|=..-.|++++-.=-=-...||+.|.+|..+|+|.++||
T Consensus 9 r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 9 KKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp SHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4566777787766655555542111112579999999999999999886
No 89
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=73.27 E-value=4.2 Score=33.86 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+++.|+.++...-+.|=..+ +-..+|+.||+|-..+-+.|..|..+|-|..+ +..|+.+.
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 74 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQ 74 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEc
Confidence 46788888888888888999999 89999999999999999999999999988554 45567666
No 90
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=73.00 E-value=25 Score=25.84 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=41.9
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
+..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|..++ .+..
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~l 100 (152)
T 3bj6_A 45 ILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWL 100 (152)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEE
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEE
Confidence 3445555568999999999999999999999999999999766654443 4555
No 91
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=72.95 E-value=28 Score=26.23 Aligned_cols=49 Identities=20% Similarity=0.140 Sum_probs=41.6
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
+..++..+..++...+|+.+|++...+-..|.+|...|-|.-+-|+.++
T Consensus 51 iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 51 ALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 3444455568999999999999999999999999999999888777665
No 92
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=72.64 E-value=27 Score=26.17 Aligned_cols=46 Identities=7% Similarity=0.107 Sum_probs=37.5
Q ss_pred HhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 142 ILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 142 yl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
++.....++...+|+.+|++...+-..|.+|...|-+.-+-|+.++
T Consensus 58 ~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 58 RLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp HHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 3333467999999999999999999999999999999887766655
No 93
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=72.44 E-value=17 Score=26.80 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=35.6
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 46 L~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 46 ISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp HHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 344445568999999999999999999999999999998766555444
No 94
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=72.41 E-value=5.7 Score=33.12 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-...+++.|+.++...-+.|=..+ +...+|+.||+|-..+.+.|..|..+|-|..+ +..|+.+.
T Consensus 11 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 75 (243)
T 2wv0_A 11 IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVS 75 (243)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEe
Confidence 346788889999888888998999 89999999999999999999999999998643 45577766
No 95
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=72.25 E-value=25 Score=25.45 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=39.3
Q ss_pred HHHhhhhh--cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYR--SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs--~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.... .++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 40 L~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 40 IDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 33444444 7999999999999999999999999999999776665554
No 96
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=71.98 E-value=7.3 Score=32.58 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-...+++.|+.++. . +.|=..+ +-..+|+.||+|-..+.+.|..|..+|-|.. +..|+.+.
T Consensus 15 ~y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~ 76 (248)
T 3f8m_A 15 KHQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVA 76 (248)
T ss_dssp HHHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEEC
T ss_pred HHHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEc
Confidence 34678888888887 7 8999999 8999999999999999999999999999865 67787777
No 97
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=71.97 E-value=1 Score=33.97 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+++.|+..++..-+.|=..+ +...+|+.||+|...|.+.+..|..+|-|..+ +..|+.+.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~ 76 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVA 76 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEc
Confidence 35788999999999999999999 89999999999999999999999999988554 55666666
No 98
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=71.72 E-value=27 Score=25.55 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=36.3
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
...++...+|+.+|++...+-..|.+|...|-+.-..|+.++ .+..
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~l 96 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSL 96 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEE
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEE
Confidence 678999999999999999999999999999999766555443 4555
No 99
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=71.67 E-value=29 Score=26.91 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=35.8
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-..++...+|..+|++.+.+-+.+.+|-.+|-|. ...+.|.+
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i 202 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEV 202 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEE
Confidence 3567899999999999999999999999988774 34677877
No 100
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=71.60 E-value=6 Score=33.70 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 126 HYRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 126 h~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-...+++.|+.++...-+.|=..+ +-..+|+.||+|-..+-+.|..|..+|-|..+ +..|+.+.
T Consensus 30 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 94 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR--SGSGTYVR 94 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--CC--EEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCceEEEe
Confidence 346788888888888889999999 89999999999999999999999999987432 34466665
No 101
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=71.41 E-value=16 Score=25.32 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=35.1
Q ss_pred HHHHhhhhh-cccHHHHHHHhCCCHHH-HHHHHHHHHHcCccc
Q psy396 139 YKQILQAYR-SLSLKYMAQCFGVSVEF-IEKEVARFAAAGRLQ 179 (239)
Q Consensus 139 l~qyl~pYs-~v~l~~mA~~fg~s~~~-lE~~L~~lI~~g~l~ 179 (239)
+..++.... .++...+|+.+|++... +-..|.+|...|-+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 444454444 69999999999999999 999999999999997
No 102
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=71.28 E-value=28 Score=25.66 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
+..++..+..++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 42 iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 42 VLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 3444455668999999999999999999999999999999776665444
No 103
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=70.61 E-value=29 Score=25.43 Aligned_cols=53 Identities=9% Similarity=0.047 Sum_probs=41.2
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
+..++..+..++...+|+.+|++...+-..|.+|...|-+.-.-|+.++ .+..
T Consensus 36 iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~L 91 (145)
T 3g3z_A 36 VLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSL 91 (145)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEE
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeE
Confidence 3344444556999999999999999999999999999999765555444 4555
No 104
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=70.34 E-value=11 Score=29.97 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhh-hcccHHHHHHHhCCCHHHHHHHHHHHHHcCc-cc
Q psy396 130 YVQEMRLRAYKQILQAY-RSLSLKYMAQCFGVSVEFIEKEVARFAAAGR-LQ 179 (239)
Q Consensus 130 l~~~ir~~~l~qyl~pY-s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~-l~ 179 (239)
....-|.+.+.+++..- ..++...+|+.||+|...+.+.|..|-..|- |.
T Consensus 17 m~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 17 TVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred hhHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 34456778888888754 3499999999999999999999999988887 64
No 105
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=70.28 E-value=32 Score=25.83 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=39.6
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
..++.....++...+|+.+|++...+-..|.+|...|-|.-+-|+.++ .|..
T Consensus 59 L~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~L 113 (161)
T 3e6m_A 59 LSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVL 113 (161)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEE
T ss_pred HHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeE
Confidence 334444458999999999999999999999999999999766655544 5555
No 106
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=70.27 E-value=7.6 Score=32.20 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 128 RHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 128 ~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..+++.|+.++...-+.|=..+ +...+|+.||+|-..+.+.|..|..+|-|..+ +..|+.+.
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~--~g~G~~V~ 70 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV--RGSGIFVR 70 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--CCceEEEe
Confidence 4678888888888888999999 89999999999999999999999999988543 45566665
No 107
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=69.69 E-value=25 Score=24.85 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
..|.+++..+ . -..++...+|+.+|+|...+-..|..|...|-+..+-+.
T Consensus 26 ~~r~~IL~~L-~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 26 YNRIRIMELL-S-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHHHHH-H-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHH-H-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3444444333 3 356899999999999999999999999999999776554
No 108
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=69.49 E-value=6.5 Score=25.94 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHHHhhh-hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 139 YKQILQA-YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 139 l~qyl~p-Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
+..|++. =--++++..|+.+|++.+++-+.|.+|=..|-|
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 3344433 246899999999999999999999999888866
No 109
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=69.36 E-value=24 Score=26.31 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=35.3
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 55 L~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 55 ITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp HHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 344444568999999999999999999999999999998765554443
No 110
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=69.27 E-value=35 Score=26.82 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=29.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
.++...+|..+|++.+.+-+.+.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47889999999999999999999999988774
No 111
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=69.17 E-value=16 Score=29.56 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=34.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++...+|..+|++.+.+-..+.+|..+|-|. ...+.+.+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~----~~~~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILD----KKKNKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE----eCCCEEEE
Confidence 57899999999999999999999999987764 34566777
No 112
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=68.87 E-value=39 Score=26.35 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=33.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++...+|..+|++.+.+-+.+.+|-.+|-|.- ..+.|.+
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i 217 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL----DGREISI 217 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE----SSSCEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe----cCCEEEE
Confidence 467899999999999999999999999887742 3455666
No 113
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.03 E-value=33 Score=25.13 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=32.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
++...+|+.+|+|...+-.-|..|...|-+.-.-+.
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~ 78 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQN 78 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 999999999999999999999999999999654443
No 114
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.01 E-value=32 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=41.3
Q ss_pred HHHh-hhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccC---CEEEE
Q psy396 140 KQIL-QAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVA---GNVVT 191 (239)
Q Consensus 140 ~qyl-~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~---~~l~~ 191 (239)
..++ .....++...+|+.+|++...+-..|.+|...|-+.-..|+.+ ..+..
T Consensus 43 L~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~l 98 (146)
T 2fbh_A 43 LLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVL 98 (146)
T ss_dssp HHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEE
Confidence 3444 4567899999999999999999999999999999976665443 34555
No 115
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=67.38 E-value=42 Score=26.14 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=39.0
Q ss_pred hhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 145 AYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 145 pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
|...++.+.+|+.+|++...+-..|.+|...|-|.-.-|+.++
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 4568999999999999999999999999999999888877665
No 116
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=67.26 E-value=40 Score=26.54 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=34.6
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..++-+.+|..+|++.+.+-+.+.+|..+|-|. ...+.|.+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i 219 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKI 219 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEE
Confidence 357889999999999999999999999988774 33567777
No 117
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=66.93 E-value=43 Score=26.12 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=33.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeeccc-CCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSV-AGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~-~~~l~~ 191 (239)
.++...+|..+|++.+.+-+.+.+|..+|-| ... .+.|.+
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEE
Confidence 5788999999999999999999999998776 333 456777
No 118
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=66.60 E-value=21 Score=26.18 Aligned_cols=54 Identities=4% Similarity=0.010 Sum_probs=40.6
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
.+..++.-...++.+.+|+.+|++...+-..|.+|...|-+.-..|+.++ .+..
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~L 96 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISL 96 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeE
Confidence 33445555678999999999999999999999999999999877766555 4555
No 119
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=66.43 E-value=11 Score=31.02 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccce--eecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQC--KIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a--rID~~~~~l~~ 191 (239)
.+.+++.|+..++..-+.|=..+ +-..+|+.||+|-.-|-+-|..|-.+|-+.. +-....|+.+.
T Consensus 6 ~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~ 73 (239)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIIT 73 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceee
Confidence 46789999999999999999999 5789999999999999999999999998865 33322677766
No 120
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=66.41 E-value=33 Score=24.55 Aligned_cols=42 Identities=5% Similarity=0.075 Sum_probs=37.8
Q ss_pred hcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 147 RSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 147 s~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
..++...+|+.+ |++...+-.-|..|...|-|.-+.|..++-
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 578999999999 999999999999999999998888776553
No 121
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=66.05 E-value=38 Score=25.11 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
+..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 49 iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 49 AFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 3444444557999999999999999999999999999999877655444
No 122
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=65.71 E-value=1.6 Score=33.49 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
|..++.|++.|=..-.|++++-.=-=-...||+.|.+|...|+|.++|+
T Consensus 42 r~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVs 90 (127)
T 2jxn_A 42 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (127)
T ss_dssp TTHHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBC
T ss_pred HHHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4456778888866666666654322234589999999999999999875
No 123
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=65.54 E-value=25 Score=26.09 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccC---CEEEE
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVA---GNVVT 191 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~---~~l~~ 191 (239)
+..++.....++...+|+.+|++...+-..|.+|...|-+.-..|..+ ..+..
T Consensus 48 iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~l 103 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRL 103 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEE
T ss_pred HHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEE
Confidence 344555566899999999999999999999999999999876554443 34455
No 124
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=65.27 E-value=30 Score=24.50 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=37.9
Q ss_pred hhcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 146 YRSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 146 Ys~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
....+...+|+.+ |++...+-..|..|...|-+.-+.|..++-
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r 79 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPP 79 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4678999999999 599999999999999999998888776653
No 125
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=64.90 E-value=41 Score=25.06 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 58 L~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 58 LAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred HHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 344444567999999999999999999999999999999776655443
No 126
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=64.49 E-value=36 Score=24.81 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..|.+++. ++.....++...+|+.+|+|...+-..|..|...|-+..+-+........
T Consensus 42 ~~rl~IL~-~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l 99 (122)
T 1u2w_A 42 ENRAKITY-ALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSL 99 (122)
T ss_dssp HHHHHHHH-HHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEE
T ss_pred HHHHHHHH-HHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEE
Confidence 33444443 44434578999999999999999999999999999887654443333333
No 127
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=63.94 E-value=30 Score=26.56 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...|-+..|.+++.... -..++...+|+.+|++...+-.-|..|...|-|..+-+........
T Consensus 52 l~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~l 114 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRL 114 (151)
T ss_dssp HHHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 34455567777665544 4679999999999999999999999999999998876655434444
No 128
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=63.68 E-value=11 Score=27.79 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=42.9
Q ss_pred HHHHHHhhhhhcccHHHHHHHh--CCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 137 RAYKQILQAYRSLSLKYMAQCF--GVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~f--g~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+.|+.++.....++...||+.+ |+|...+.+-|..|-..|-|... ..+....
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~L 69 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVI 69 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEE
Confidence 4455677777899999999999 99999999999999999999764 4454444
No 129
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=63.43 E-value=40 Score=24.52 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=39.3
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
.++..... +.+.+|+.+|++...+-..|.+|...|-+.-.-|+.++-
T Consensus 44 ~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 44 KATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp HHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 33344445 999999999999999999999999999998888777663
No 130
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=63.01 E-value=12 Score=29.77 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhh----h-cccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 135 RLRAYKQILQAY----R-SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 135 r~~~l~qyl~pY----s-~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
|++.+..|+.-| . ..++..+|+.||++...+...|.+|-..|-|.
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 344445555443 2 48999999999999999999999999999884
No 131
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=62.90 E-value=20 Score=26.64 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=38.3
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
+..++.....++.+.+|+.+|++...+-..|.+|...|-|.-+-|+.++ .+..
T Consensus 46 iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~L 101 (149)
T 4hbl_A 46 VMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITL 101 (149)
T ss_dssp HHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEE
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeE
Confidence 3344444578999999999999999999999999999999776665554 4555
No 132
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=62.88 E-value=28 Score=23.26 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhh--hcccHHHHHHHh-----CCCHHHHHHHHHHHHHcCccce
Q psy396 135 RLRAYKQILQAY--RSLSLKYMAQCF-----GVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 135 r~~~l~qyl~pY--s~v~l~~mA~~f-----g~s~~~lE~~L~~lI~~g~l~a 180 (239)
+...+.+++... ..++...+++.+ ++|...|-..|..|...|-+.-
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 345566677654 579999999999 9999999999999999999864
No 133
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=62.66 E-value=15 Score=26.97 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=40.9
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-..|..++ .+..
T Consensus 46 L~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~L 100 (147)
T 1z91_A 46 LLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISL 100 (147)
T ss_dssp HHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEE
T ss_pred HHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEE
Confidence 344444568999999999999999999999999999999766655443 4555
No 134
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=62.62 E-value=14 Score=25.53 Aligned_cols=41 Identities=5% Similarity=0.077 Sum_probs=36.2
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a 180 (239)
+..|.+=...+...+|+.||+|-..+-+.|-.|=.+|.+..
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~ 61 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEec
Confidence 34777777799999999999999999999999999988854
No 135
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=62.34 E-value=34 Score=25.92 Aligned_cols=42 Identities=5% Similarity=0.106 Sum_probs=37.8
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
....+.+.+++.+|++...+-+-|..|...|-|.-+.+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999888876655
No 136
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=62.29 E-value=51 Score=25.30 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=33.2
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++-..+|..+|++.+.+-..+.+|-.+|-|. ...+.|.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i 206 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVV 206 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEE
Confidence 57889999999999999999999999988774 23455555
No 137
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=62.24 E-value=13 Score=24.56 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=30.4
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
+-.+-..+|..||+|.+.....|.+|..+|.|.
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LR 49 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARNALEQLFSAGTLR 49 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccccHHHHHHHhCCcHHHHHHHHHHHHhcchhh
Confidence 467889999999999999999999999999984
No 138
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=62.04 E-value=25 Score=26.05 Aligned_cols=48 Identities=13% Similarity=0.184 Sum_probs=36.2
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce--eecccCC
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC--KIDSVAG 187 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a--rID~~~~ 187 (239)
+..++ ....++.+.+|+.+|++...+-..|.+|...|-+.- ..|+.++
T Consensus 43 iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 43 VLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 34445 668899999999999999999999999999999975 3355555
No 139
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=61.97 E-value=18 Score=26.92 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=39.0
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
..++.....++...+|+.+|++...+-..|.+|...|-+.-..|..++ .+..
T Consensus 53 L~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~l 107 (153)
T 2pex_A 53 MLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIAL 107 (153)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEE
T ss_pred HHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeE
Confidence 344444567999999999999999999999999999999776655444 5555
No 140
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=60.35 E-value=13 Score=32.26 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
|...+.+++..-..++.+.+|+.||+|...+.+.|..|-..|-+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~ 49 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 55667788877778999999999999999999999999887765
No 141
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=60.30 E-value=40 Score=23.41 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 130 YVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 130 l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+-+..|.+++....+ ...+...+|+.+|+|...+-.-|..|...|-+..+-+........
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRL 79 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEE
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEE
Confidence 333445555444333 468999999999999999999999999999998776665555555
No 142
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=60.11 E-value=20 Score=23.19 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 136 LRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 136 ~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
++.+..++ +...+...+|+.+|+|...+...+.+...
T Consensus 16 e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 16 EREVFELL--VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp HHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344443 45669999999999999999998887654
No 143
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=59.96 E-value=26 Score=27.38 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=45.2
Q ss_pred ccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 118 KRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 118 ~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
...+-|+...++=++.+..-+. -.+=..++...+|+.+|+|...+++-+..|-..|-+..+=..
T Consensus 17 ~~~M~lS~~~~yAlr~L~~LA~---~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~ 80 (159)
T 3lwf_A 17 FQGMKITTKGRYGLTITLELAK---RIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGA 80 (159)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHH---TTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECST
T ss_pred eeeeeCchHHHHHHHHHHHHHh---cCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 3344456666655555444332 122235999999999999999999999999999988765333
No 144
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.67 E-value=13 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.3
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
.-.+...+|+.||+|...|..++..+
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45789999999999999999988654
No 145
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=58.89 E-value=15 Score=23.28 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhhccc----HHHHHHHhCCCHHHHHHHHHH
Q psy396 134 MRLRAYKQILQAYRSLS----LKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~----l~~mA~~fg~s~~~lE~~L~~ 171 (239)
.+.++ ..++++ ..+ +..+|..||++...|-.|+.+
T Consensus 10 fK~~~-~~~~~~--g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 10 FKLQV-LESYRN--DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHH-HHHHHH--CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHH-HHHHHc--CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 34555 555554 345 899999999999999999854
No 146
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=58.81 E-value=19 Score=27.35 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=35.6
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..++...+|+.+|+|...+++-+..|-..|-+..+= ..+|-...
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~r-G~~GGy~L 70 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVR-GAKGGYQL 70 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECS-SSSSEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecC-CCCCCeee
Confidence 369999999999999999999999999999886543 33444444
No 147
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=58.22 E-value=26 Score=25.65 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.8
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCcccee
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ar 181 (239)
..++...+|+.+|+|...+.+.+..|-..|-+...
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 46899999999999999999999999999988653
No 148
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=58.21 E-value=1.7 Score=32.87 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 137 RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 137 ~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
-++.|++.|=..=.|++++-.=-=-...||+.|.+|...|+|.++||
T Consensus 44 ~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~li~laq~Gql~~ki~ 90 (116)
T 2hvu_A 44 AAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (116)
T ss_dssp TTTTTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCBC
T ss_pred HHHHHHcCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 34556666655555555543322233679999999999999999886
No 149
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=58.13 E-value=20 Score=28.79 Aligned_cols=53 Identities=13% Similarity=0.381 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcccee
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ar 181 (239)
...+.+..+.+++ .++. -..++...+|+.+|+|...+-..|..|...|-|...
T Consensus 14 ~k~l~d~~~~~IL-~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 14 IKVMLEDTRRKIL-KLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHSHHHHHHH-HHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHH-HHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444555555544 4555 368999999999999999999999999999999665
No 150
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=57.96 E-value=10 Score=28.00 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=29.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccce
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a 180 (239)
-.+...+|+.||++...+.+++..+...|.+-.
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 347789999999999999999999999988854
No 151
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=57.54 E-value=46 Score=25.07 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=34.7
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++...+|+.+|++...+-..|.+|...|-|.-+-|..++
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999888877766
No 152
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=57.53 E-value=23 Score=26.11 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=27.2
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
..++...+|+.+|++...+-..|.+|...|-+.-.-|+.++-
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR 97 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNAR 97 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCch
Confidence 689999999999999999999999999999998777666553
No 153
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=57.10 E-value=19 Score=26.81 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=31.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
++.+.+|+.+|+++..+.+.|..|+..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 79999999999999999999999999998865444
No 154
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=56.98 E-value=36 Score=24.93 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
.|.+++....+ ...+...+|+.+|+|...+-.-|..|-..|-+..+-+
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 35555544433 4688999999999999999999999999998876554
No 155
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=56.52 E-value=77 Score=25.65 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=33.2
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++...+|..+|++.+.+-+.|.+|..+|-|. ...+.|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I 256 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVV 256 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEE
Confidence 57889999999999999999999999988774 33455555
No 156
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=56.52 E-value=21 Score=24.79 Aligned_cols=42 Identities=12% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcC
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAG 176 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g 176 (239)
.+..++..|+.. ...++..+|..||++...|-.|+.++-..|
T Consensus 10 ~k~~~v~~~~~~-~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 10 FKRDAVALYENS-DGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHHTTG-GGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHc-CCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 455666666542 157899999999999999999998875543
No 157
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=56.33 E-value=17 Score=32.07 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=40.1
Q ss_pred HHHHHHH-----HhhhhhcccHHHHHHHh--CCCHHHHHHHHHHHHHcCccc
Q psy396 135 RLRAYKQ-----ILQAYRSLSLKYMAQCF--GVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 135 r~~~l~q-----yl~pYs~v~l~~mA~~f--g~s~~~lE~~L~~lI~~g~l~ 179 (239)
|.+.|.+ |++.-..|....+|+.| |+|++.|-.++..|=..|.|.
T Consensus 18 R~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 18 RQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 5555666 99999999999999999 999999999999999999884
No 158
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=55.71 E-value=60 Score=24.07 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHhhhhhcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccceeecccCCE
Q psy396 140 KQILQAYRSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQCKIDSVAGN 188 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~arID~~~~~ 188 (239)
+..+. ....+...+++.+ |++...+-..|..|...|-|.-+.|..++-
T Consensus 41 L~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r 89 (131)
T 1yyv_A 41 LVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPP 89 (131)
T ss_dssp HHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred HHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 34444 5679999999999 799999999999999999999888876653
No 159
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=55.34 E-value=34 Score=25.85 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=31.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 150 SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 150 ~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
++..+|+.+|+|...+++.+.+|-..|-+...=.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC
Confidence 9999999999999999999999999998866444
No 160
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=55.18 E-value=73 Score=24.84 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=34.1
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++-..+|..+|++.+.+-+.+.+|..+|-|.- ..+.|.+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i 216 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLI 216 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEE
Confidence 478899999999999999999999999887643 4577777
No 161
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=54.90 E-value=58 Score=23.65 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=37.6
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+.-..+++..+|+.+|++...+-..|..|...|-+.-. . +.+..
T Consensus 24 ~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~L 70 (139)
T 2x4h_A 24 RYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWI 70 (139)
T ss_dssp HHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEE
T ss_pred HHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEE
Confidence 33445578999999999999999999999999999877532 1 55666
No 162
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=54.70 E-value=64 Score=24.03 Aligned_cols=43 Identities=23% Similarity=0.152 Sum_probs=34.8
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...++...+|+.||+|...+-..|..|...|-+.-+-+ +.+..
T Consensus 52 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~---~~~~l 94 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW---RGVFL 94 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT---TEEEE
T ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC---CceEE
Confidence 35689999999999999999999999999987754422 44555
No 163
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=54.53 E-value=26 Score=31.37 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 131 VQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 131 ~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
++..-.+.+.+++.....++-..+|+.+|+|...+-+-+.+|+..|-+
T Consensus 36 ~r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli 83 (429)
T 1z05_A 36 IKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLI 83 (429)
T ss_dssp HHHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 344455567788888899999999999999999999999999999877
No 164
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=54.10 E-value=26 Score=24.48 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHc
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAA 175 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~ 175 (239)
|++-+..++ +.-.+...+|+.+|+|...|...+.+....
T Consensus 31 ~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 31 QERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344455554 678899999999999999999999887653
No 165
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=54.00 E-value=46 Score=23.20 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 131 VQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 131 ~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
...+.+++|.-.=+.=+-++-..+|+..|++-.+|.+.|-+|=.+|+|
T Consensus 17 ~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 17 EGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 344555555555555678999999999999999999999999998886
No 166
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=53.76 E-value=30 Score=25.12 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeeccc
Q psy396 128 RHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSV 185 (239)
Q Consensus 128 ~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~ 185 (239)
..+.+..|.+++..+.. ...+...+|+.+|+|...+-..|..|...|-+..+-+..
T Consensus 16 ~aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 71 (118)
T 2jsc_A 16 RALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGR 71 (118)
T ss_dssp HHHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSS
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECC
Confidence 44445556666554332 457889999999999999999999999999997765543
No 167
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=53.64 E-value=29 Score=23.77 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHH
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFA 173 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI 173 (239)
.+..++..+ + ...++..+|+.||++...|-.|+.++=
T Consensus 27 ~k~~~v~~~-~--~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 27 DKIHAIQRI-H--DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HHHHHHHHH-H--HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-H--CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344555444 3 357899999999999999999997654
No 168
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=53.60 E-value=6.2 Score=34.94 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=38.3
Q ss_pred HHHHHHHHH---HHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 128 RHYVQEMRL---RAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 128 ~~l~~~ir~---~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
+..-+.+|. +.+.+++. ...++-..+|+.+|+|...+-+-+.+|+.+|-+.
T Consensus 11 ~~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 11 HHMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp -----------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred ccCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344444444 35788888 9999999999999999999999999999999873
No 169
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=53.25 E-value=28 Score=21.65 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=24.9
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45678899999999999999998887665
No 170
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=53.21 E-value=71 Score=24.14 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=35.0
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC---EEEE
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG---NVVT 191 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~---~l~~ 191 (239)
..++...+|+.+|++...+-..|.+|...|-|.-.-|..++ .|..
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~L 114 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKL 114 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEE
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEE
Confidence 46999999999999999999999999999999776655544 5555
No 171
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=53.19 E-value=64 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=31.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.++...+|+.+|++...+-..|.+|...|-+.-.-|+.++
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 5899999999999999999999999999999776666555
No 172
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=53.02 E-value=14 Score=25.25 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.5
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
|-+.++..+|+.+|++.+++|+.|..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 78899999999999999999987754
No 173
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=52.82 E-value=16 Score=27.28 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=30.3
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCc-cc
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGR-LQ 179 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~-l~ 179 (239)
.-.++..+|+.=|++...++..|++++.+|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 4789999999999999999999999999995 54
No 174
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=52.55 E-value=29 Score=23.46 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=25.7
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+.-.+...+|+.+|+|...|...+.+...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999999887665
No 175
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=52.54 E-value=81 Score=24.61 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=34.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++...+|..+|++.+.+-+.|.+|..+|-|. ...+.|.+
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i 214 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTL 214 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEE
Confidence 57899999999999999999999999988774 23566776
No 176
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=52.48 E-value=23 Score=31.37 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 132 QEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 132 ~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
+..-.+.+.+++.....++-..+|+.+|+|...+-+-+.+|+..|-+
T Consensus 14 r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i 60 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLV 60 (406)
T ss_dssp HHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 34444567888888899999999999999999999999999998876
No 177
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=51.81 E-value=32 Score=22.55 Aligned_cols=29 Identities=24% Similarity=0.152 Sum_probs=25.7
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+.-.+...+|+.+|+|...+...+.+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57789999999999999999998887665
No 178
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=51.59 E-value=22 Score=31.81 Aligned_cols=53 Identities=8% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 138 AYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 138 ~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.+.+++...-.++++.+++.+|+|...+.+.|.+|...|-|. ++....+.+++
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~-~~~~gR~~~y~ 353 (373)
T 3eqx_A 301 ELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE-EVQSGKEKLFV 353 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE-EC--CCSCEEE
T ss_pred HHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE-EeCCCCceEee
Confidence 345555545568999999999999999999999999999885 33333444554
No 179
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=51.50 E-value=62 Score=22.97 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
+.+++....+ ...++..+|+.+|+|...+-..|..|...|-+.-.-+
T Consensus 34 ~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 34 RLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRA 80 (119)
T ss_dssp HHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 3444433333 4689999999999999999999999999888855433
No 180
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=51.29 E-value=84 Score=24.40 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=33.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++-..+|..+|++.+.+-..|.+|..+|-|.- ..+.|.+
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i 226 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHA----RGKTVVL 226 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE----CCCEEEE
Confidence 368899999999999999999999999887742 3455555
No 181
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=51.19 E-value=33 Score=25.50 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=33.9
Q ss_pred hhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 144 QAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 144 ~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.....++...+|+.+|++...+-..|.+|...|-|.-.-|..++
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 34467999999999999999999999999999999765554443
No 182
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=51.11 E-value=87 Score=24.91 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=34.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++-..+|..+|++.+.+-+.|.+|..+|-|. ...+.|.+
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I 232 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITV 232 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEE
Confidence 57889999999999999999999999988775 33577777
No 183
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=49.79 E-value=28 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=25.8
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+.-.+...||+.+|+|...|...+.+...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999999988765
No 184
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=49.73 E-value=31 Score=24.37 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhh---h--cccHHHHHHHhCCCHHHHHHHHHHHHHcCc
Q psy396 133 EMRLRAYKQILQAY---R--SLSLKYMAQCFGVSVEFIEKEVARFAAAGR 177 (239)
Q Consensus 133 ~ir~~~l~qyl~pY---s--~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~ 177 (239)
+.+.+++..+++.- . -.++..+|..||++...+-.|+.+.-..|.
T Consensus 10 e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 10 EVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 44666777776642 1 168899999999999999999999876553
No 185
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=49.69 E-value=70 Score=26.47 Aligned_cols=48 Identities=8% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-|.-.+-..+...+|+.+|+|+..|+..|.+|...|-+.- ..+|.|.+
T Consensus 171 ~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~---~~~~~~~~ 218 (232)
T 2qlz_A 171 HYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKI---INDNTVVL 218 (232)
T ss_dssp HHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE---ETTTEEEE
T ss_pred HHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEE---ecCCeEEe
Confidence 3344457899999999999999999999999999888762 23556666
No 186
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=49.68 E-value=84 Score=23.93 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=32.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++...+|..+|++.+.+-+.+.+|..+|-|.- ..+.|.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i 203 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV----KGKTMVV 203 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEE
Confidence 578899999999999999999999999887742 2455555
No 187
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=49.36 E-value=28 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=25.7
Q ss_pred HHHHhhhh---hcccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 139 YKQILQAY---RSLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 139 l~qyl~pY---s~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
+.+|+... ..++++.+|+.+|+|...+.....+.
T Consensus 8 ~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 8 ACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555432 47999999999999999888777653
No 188
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.02 E-value=50 Score=26.32 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=36.7
Q ss_pred HhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 142 ILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 142 yl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
++.....++...+|+.+|++...+-..|.+|...|-|.-..|+.++
T Consensus 56 ~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 56 IAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp HHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC----
T ss_pred HHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 3333457999999999999999999999999999999877776655
No 189
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=48.87 E-value=40 Score=28.83 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=38.1
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeeccc
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSV 185 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~ 185 (239)
+.++.-...++.+.+|+.||+|...|-+.|..+-..|.+.-++...
T Consensus 13 ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 13 IAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp HHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 3444444679999999999999999999999999999998666553
No 190
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=48.68 E-value=35 Score=26.96 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
|.+.+..|+. .-+++...+|+++|+|-..+.--|-.|=.+|.+
T Consensus 12 rk~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V 54 (165)
T 2vxz_A 12 RLRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRV 54 (165)
T ss_dssp HHHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCce
Confidence 5567788999 999999999999999999999999999898887
No 191
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=47.93 E-value=36 Score=23.67 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=21.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
.++++.+|+.+|+|...+...+.+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999888877663
No 192
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=47.80 E-value=26 Score=25.12 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCc
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGR 177 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~ 177 (239)
-+..++..++.. ..++...|..||++...+..|...+-..|.
T Consensus 37 ~Kl~VV~~~~~g--~~s~~e~arry~Is~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 37 RKAAVVKAVIHG--LITEREALDRYSLSEEEFALWRSAVAAHGE 78 (95)
T ss_dssp HHHHHHHHHHTT--SSCHHHHHHHTTCCHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 455566666666 788999999999999999999998766553
No 193
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=47.40 E-value=27 Score=30.95 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=37.0
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+.+++...-.++++.+++.+|+|...+.+.|.+|...|.|.- +....+.+..
T Consensus 302 ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~-~~~gR~~~y~ 353 (373)
T 2qc0_A 302 LVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE-VQSGKEKLFV 353 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE-C--CCSCEEE
T ss_pred HHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE-ecCCCceEEe
Confidence 344443334578889999999999999999999999999853 2333334444
No 194
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=46.93 E-value=27 Score=24.57 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.5
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
..++++.+|+.+|+|...+.....+
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4589999999999999988777765
No 195
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.57 E-value=37 Score=21.79 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.9
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+...+...+|+.+|+|...|...+.+.+.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47889999999999999999999888765
No 196
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=45.02 E-value=1.1e+02 Score=24.94 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=85.9
Q ss_pred chhcCHHHHHHHHhcc------CCCCCCc----cccCHhHHHHHHHHHHHHcCChhHHHHccccchhHHHHhhhh---hh
Q psy396 23 LAIRQYCRAAELFVDV------VPTFESY----ELAEFGTIIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQ---YR 89 (239)
Q Consensus 23 l~~~~y~~Aa~~F~~~------~~~f~~~----e~~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~~~e~~---~p 89 (239)
+..+||.++....-.. .+.|... ++.-+.++.-.+++.+|-..+-.+... ... .++.+-... .|
T Consensus 18 ~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~-~~~--qLk~~Y~~~~~~s~ 94 (229)
T 4b0z_A 18 YDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFAR-YAS--QVIPFYHDSLVPSS 94 (229)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHH--HHHHHHSSCCCCCT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHH--HHHHHHHccCCCCc
Confidence 4578998888776653 1223211 222244566677888888777654422 111 122222210 11
Q ss_pred ---HH--HHHHHHHHhchHHHHHHHHHHHHh--hhccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCH
Q psy396 90 ---DL--REYFVSLYDGHYFEFLKCLAAVEQ--DMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSV 162 (239)
Q Consensus 90 ---~l--~~li~af~~~~y~~~~~~L~~~~~--~l~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~ 162 (239)
.+ ..++.....++..+|...|+...+ .+..|++++ |.-.+.+.+++..+.++++-+++..-...+-...+=.
T Consensus 95 ~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~-~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~ 173 (229)
T 4b0z_A 95 RMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVE-WVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVM 173 (229)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHH-HHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHH-HHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHH
Confidence 11 235555667888899888887643 367899887 5567888999999999999988876433332222223
Q ss_pred HHHHHHHHHHHH
Q psy396 163 EFIEKEVARFAA 174 (239)
Q Consensus 163 ~~lE~~L~~lI~ 174 (239)
+.+..++...|.
T Consensus 174 ~~vR~~~l~~i~ 185 (229)
T 4b0z_A 174 SMVRNEIATCAE 185 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 197
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=44.88 E-value=78 Score=22.18 Aligned_cols=39 Identities=3% Similarity=-0.047 Sum_probs=33.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+....+|..+|++...+.+.+..|...|-+.-. .+.+..
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~----~~~~~L 59 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE----GKQYML 59 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE----TTEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE----CCeeEE
Confidence 999999999999999999999999999988655 334555
No 198
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=44.87 E-value=4.1 Score=31.69 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce
Q psy396 131 VQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 131 ~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a 180 (239)
++.++.+++. .+.|-..++...+|+.||+|...+-+.|.+|..+|-+..
T Consensus 11 ~d~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4556666666 889999999999999999999999999999999998864
No 199
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=44.83 E-value=40 Score=27.87 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=16.4
Q ss_pred HHHHHHchhcCHHHHHHHHhccCC
Q psy396 17 YEGVYCLAIRQYCRAAELFVDVVP 40 (239)
Q Consensus 17 ~~Gl~~l~~~~y~~Aa~~F~~~~~ 40 (239)
--|..+...|+|.+|..+|-.+..
T Consensus 160 ~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 160 KASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566677788887777777743
No 200
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=44.77 E-value=97 Score=23.28 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=34.3
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..++...+|+.+|+|...+++.+..|-..|-+..+=. +|-...
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG--~GGy~L 71 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG--PGGAGL 71 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----CCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC--CCceEe
Confidence 5699999999999999999999999999998865443 444444
No 201
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=44.73 E-value=69 Score=26.63 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++.....+++..+|+.+|+|...+-+.|..|...|-+... ..++.+..
T Consensus 159 ~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~L 207 (244)
T 2wte_A 159 NVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVEL 207 (244)
T ss_dssp HHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEE
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEE
Confidence 34434467999999999999999999999999999998664 44566666
No 202
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=44.23 E-value=5.4 Score=33.35 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc-cHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSL-SLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v-~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
...+++.|+.++...-+.|=..+ +...+|+.||+|-..+.+.|..|..+|-|..+ +..|+.+.
T Consensus 18 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 81 (247)
T 2ra5_A 18 YFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR--RGVGTQVV 81 (247)
T ss_dssp --------------------------------------------------CEEEEE--C-------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--cCceeEEe
Confidence 45778888888888888998999 89999999999999999999999999988543 34455555
No 203
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=44.07 E-value=29 Score=27.05 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=32.0
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCcccee
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ar 181 (239)
..++.+.+|+.+|+|...+++-+..|-..|-+..+
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 56999999999999999999999999999988654
No 204
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=43.96 E-value=69 Score=23.76 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=37.8
Q ss_pred hhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 144 QAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 144 ~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.|...++.+.+|+.+|++...+-..|.+|...|-+.-+-|+.++
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 45667999999999999999999999999999999888887776
No 205
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=43.48 E-value=41 Score=27.75 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=38.1
Q ss_pred HHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEE
Q psy396 141 QILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVV 190 (239)
Q Consensus 141 qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~ 190 (239)
++++.-..|+...+|+.||||..-..+.|..++.+|.+- +=|+..|.-.
T Consensus 161 ~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~-~D~~~eg~~y 209 (218)
T 3cuq_B 161 ETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLC-RDDSVEGLRF 209 (218)
T ss_dssp HHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EEESSSCEEE
T ss_pred HHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEE-EECCCCceEE
Confidence 444555689999999999999999999999999998772 2246666433
No 206
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=42.83 E-value=58 Score=22.83 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 133 EMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 133 ~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
..|.+++.-+. .-.++..+|+.||+|...|..|+..+-..|.+
T Consensus 21 ~~r~~i~~~~~---~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~ 63 (128)
T 1pdn_C 21 NIRLKIVEMAA---DGIRPCVISRQLRVSHGCVSKILNRYQETGSI 63 (128)
T ss_dssp HHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCc
Confidence 34555544442 45788999999999999999999998777754
No 207
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=41.47 E-value=21 Score=21.43 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
.+++..+|+.+|++++.+-+.+..+
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 3678899999999999888887764
No 208
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=41.39 E-value=39 Score=23.15 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=23.5
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFA 173 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI 173 (239)
+.-.+...+|+.+|+|...|...+.+..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567899999999999999988877654
No 209
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.43 E-value=59 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
|++-+..++. .-.+...+|+.+|+|+..|...+.++..
T Consensus 33 rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 33 RECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp HHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444445543 6789999999999999999999988765
No 210
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=40.39 E-value=47 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.3
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
..++++.+|+.+|+|...+.....+.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46899999999999999988877664
No 211
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=40.15 E-value=1.1e+02 Score=22.76 Aligned_cols=42 Identities=5% Similarity=0.094 Sum_probs=37.8
Q ss_pred hhcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 146 YRSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 146 Ys~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
....+.+.+++.+ |+|...+-..|.+|-.+|-+.-+.+..++
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 5678999999999 99999999999999999999877777655
No 212
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=39.60 E-value=44 Score=23.64 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.1
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
..++++.+|+.+|+|...+...+.+.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45899999999999999888777663
No 213
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=39.23 E-value=1.5e+02 Score=23.74 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=38.7
Q ss_pred HhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 142 ILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 142 yl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
..+....++...+|+.+|++...+-+.|.+|...|-+.-.-| +.+..
T Consensus 14 l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~L 60 (214)
T 3hrs_A 14 LGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLL 60 (214)
T ss_dssp TTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEE
T ss_pred HHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEE
Confidence 344556799999999999999999999999999998865433 56666
No 214
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=38.64 E-value=42 Score=22.61 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q psy396 151 LKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 151 l~~mA~~fg~s~~~lE~~L~~ 171 (239)
...+|+.+|+|...|-+|+..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 889999999999999999864
No 215
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=37.97 E-value=74 Score=19.95 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=23.9
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+...+...+|+.+|+|...+...+.+...
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34678999999999999999888876543
No 216
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=37.29 E-value=1.1e+02 Score=21.82 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=36.6
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
..++...+|+.+|+|...+-.-|..|...|-+.-.-|+.++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 57999999999999999999999999999999877666554
No 217
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=37.16 E-value=65 Score=22.82 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=24.5
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
.-.+...||+.+|+|+..|...+.+...
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5778899999999999999998887655
No 218
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=37.11 E-value=87 Score=23.45 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=46.3
Q ss_pred HHHHHHHhhhccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 108 KCLAAVEQDMKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 108 ~~L~~~~~~l~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+.+..+...+....+--|.........|.+.+.+- |.-.++..+|..+|+|...|-+-+.+.-.
T Consensus 55 e~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~---f~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 55 EIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWND---FNGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp HHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHH---CCSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHH---hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444555556656666666777777888877664 45779999999999999988887766544
No 219
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=36.56 E-value=1e+02 Score=24.16 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.2
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
++-..+|..+|++.+.+-+.+.+|..+| | . ...+.|.+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~--~~~~~i~I 216 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V--T--VKRNHAEI 216 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--E--CCTTEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--E--eeCCEEEE
Confidence 4567899999999999999999999998 6 3 34677887
No 220
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=36.51 E-value=47 Score=26.06 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh--cccHHHHHHHhCCCHHHHHHHHH
Q psy396 128 RHYVQEMRLRAYKQILQAYR--SLSLKYMAQCFGVSVEFIEKEVA 170 (239)
Q Consensus 128 ~~l~~~ir~~~l~qyl~pYs--~v~l~~mA~~fg~s~~~lE~~L~ 170 (239)
..+-..++..+..++.-|+. .+++..+|+.+|+|...+-+|..
T Consensus 26 ~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 26 AKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 44555555555567776666 58999999999999999888776
No 221
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=36.42 E-value=45 Score=25.82 Aligned_cols=41 Identities=7% Similarity=0.167 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHh-----CCCHHHHHHHHHHH
Q psy396 132 QEMRLRAYKQILQAYRSLSLKYMAQCF-----GVSVEFIEKEVARF 172 (239)
Q Consensus 132 ~~ir~~~l~qyl~pYs~v~l~~mA~~f-----g~s~~~lE~~L~~l 172 (239)
+.-|...+.++++.....+.+.+++.| ++|...+-..|.+|
T Consensus 3 k~~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 3 KGQRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp -CHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 345888999999999999999999999 99999999998886
No 222
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=36.02 E-value=1.2e+02 Score=21.61 Aligned_cols=62 Identities=5% Similarity=0.107 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 128 RHYVQEMRLRAYKQILQAYRSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 128 ~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+-+-..-|..++......-.+++...+++.+ |+|...+-+.|..|-..|-+.-+.+ ..+.+.
T Consensus 22 ~~l~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~ 84 (111)
T 3df8_A 22 HLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG--QITTYA 84 (111)
T ss_dssp HHHHSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES--SSEEEE
T ss_pred HHHcCccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec--CcEEEE
Confidence 4444444555554443221234499999999 9999999999999999999988877 444444
No 223
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=35.57 E-value=43 Score=26.18 Aligned_cols=40 Identities=10% Similarity=0.286 Sum_probs=0.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++...+|..+|++.+.+-+.+.+|..+|-|. ...+.|.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~----~~~~~i~I 203 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIE----KHGRRIKV 203 (213)
T ss_dssp --------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE----EcCCEEEE
Confidence 67899999999999999999999998887763 33455655
No 224
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=35.34 E-value=1.6e+02 Score=23.10 Aligned_cols=40 Identities=5% Similarity=0.145 Sum_probs=33.8
Q ss_pred cccHHHHHHHhCCCH-HHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSV-EFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~-~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++-..||..+|++. +.+-+.|.+|-.+|-|. ...+.|.+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~----~~~~~i~I 209 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV----YKNSCFYV 209 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE----ecCCEEEE
Confidence 577899999999999 89999999999988764 34567777
No 225
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=35.02 E-value=83 Score=23.23 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 132 QEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 132 ~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
.+.|.+++..+. .-.++..+|+.||+|...|..|+.++-..|.+
T Consensus 35 ~e~r~~iv~~~~---~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 35 DVVRQRIVELAH---QGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78 (149)
T ss_dssp HHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 445666655553 35788999999999999999999998877654
No 226
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=34.96 E-value=1.1e+02 Score=20.92 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=27.7
Q ss_pred hhhhcccHHHHHHHhC-----------CCHHHHHHHHHHHHHcCccce
Q psy396 144 QAYRSLSLKYMAQCFG-----------VSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 144 ~pYs~v~l~~mA~~fg-----------~s~~~lE~~L~~lI~~g~l~a 180 (239)
.-+.++.+++|...+. ++.++++..|.+++.+|+|.+
T Consensus 18 tN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 18 TNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred hcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 3467777777665542 366999999999999998854
No 227
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=34.80 E-value=60 Score=23.38 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHHHHHHHH
Q psy396 90 DLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEMRLR 137 (239)
Q Consensus 90 ~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~ir~~ 137 (239)
.+.++...|- .+..+..-...++...+..|+-|...+..|.+.+...
T Consensus 52 Sl~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 52 SLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp CHHHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 4677888887 9999999999999999999999999998888877654
No 228
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=34.09 E-value=37 Score=23.61 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=30.4
Q ss_pred CCchhhhhhhHHHHHHHHchhcCHHHHHHHHhccCC
Q psy396 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVP 40 (239)
Q Consensus 5 ~~dw~~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~ 40 (239)
-||.......-...|..+...|+|.+|..+|-++..
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 37 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 37 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 367788888888999999999999999999999854
No 229
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=33.48 E-value=36 Score=25.73 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.5
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
|-+.+++.+|+.+|++.+++|+.|..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88899999999999999999987754
No 230
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=33.42 E-value=68 Score=28.17 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=49.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHhhh-----hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcccee
Q psy396 123 LNPHYRHYVQEMRLRAYKQILQA-----YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181 (239)
Q Consensus 123 L~~h~~~l~~~ir~~~l~qyl~p-----Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ar 181 (239)
++.....+...+|..++.|-.+| |...+...+|+..|++...++..+.++-..|..-++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (403)
T 3ez9_A 13 IALRASALLKAMSQDIEDQRKEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNK 76 (403)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCE
T ss_pred HHHHHHHHHHHHHHHHhccccCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCc
Confidence 35567788899999999988887 568999999999999999998888888777776555
No 231
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=33.04 E-value=41 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.0
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
..++++.+|+.+|+|...+.....+.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35999999999999999888777663
No 232
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=32.79 E-value=1.3e+02 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.6
Q ss_pred HHHHHHchhcCHHHHHHHHhccC
Q psy396 17 YEGVYCLAIRQYCRAAELFVDVV 39 (239)
Q Consensus 17 ~~Gl~~l~~~~y~~Aa~~F~~~~ 39 (239)
-.|..++..|+|++|...|-++.
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al 40 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAV 40 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999884
No 233
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=32.54 E-value=1.1e+02 Score=28.54 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=45.3
Q ss_pred hccCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHH-HHHHHhCCCHHHHHHHHHHH
Q psy396 117 MKRDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLK-YMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 117 l~~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~-~mA~~fg~s~~~lE~~L~~l 172 (239)
---|+-|..-+..-+...-..+|..|++-|..++.. +-.+-+..+++.+|..|.+|
T Consensus 510 ~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~L 566 (571)
T 2pft_A 510 AIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRL 566 (571)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTS
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHHHHHHH
Confidence 345999999998888888888999999999987653 34455688999999988764
No 234
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=32.41 E-value=69 Score=22.90 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.6
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
..++++.+|+.+|+|...+...+.+
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4689999999999999988877655
No 235
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=32.34 E-value=35 Score=20.09 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.7
Q ss_pred cHHHHHHHhCCCHHHHHH
Q psy396 150 SLKYMAQCFGVSVEFIEK 167 (239)
Q Consensus 150 ~l~~mA~~fg~s~~~lE~ 167 (239)
++..+|+.||++++.+.+
T Consensus 12 tl~~Ia~~~~~~~~~l~~ 29 (48)
T 1e0g_A 12 SLSSIAKRHGVNIKDVMR 29 (48)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHH
Confidence 578899999999877644
No 236
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=32.14 E-value=36 Score=26.22 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.1
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARF 172 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~l 172 (239)
++.=+|+.+|+.+|++++.+.+.+.++
T Consensus 93 ~kadTleeLA~~~gid~~~L~~TV~~y 119 (160)
T 2lfc_A 93 FVKGSLESAAEQAGIVVDELVQTVKNY 119 (160)
T ss_dssp EECSSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 345589999999999999999999765
No 237
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=31.39 E-value=54 Score=25.96 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=34.4
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-.++...+|..+|++.+.+-..+.+|..+|-|.- ..+.|.+
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~----~~~~i~I 225 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL----HRKEILI 225 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE----ETTEEEE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe----cCCEEEE
Confidence 3578999999999999999999999999888742 3566766
No 238
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=30.94 E-value=1.3e+02 Score=20.70 Aligned_cols=52 Identities=12% Similarity=0.275 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeec
Q psy396 130 YVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 130 l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID 183 (239)
+.+..|.+++...+. ....+...+|+.+|+|...+-.-|..|-.. -+..+-+
T Consensus 24 L~~~~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 24 MAHPMRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp HCSHHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred hCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 334556665544443 367999999999999999999999999888 6666554
No 239
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=30.91 E-value=48 Score=25.84 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=30.7
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccce-eecccCCEEEE
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQC-KIDSVAGNVVT 191 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~a-rID~~~~~l~~ 191 (239)
.-+++..+|+.+|++... +-++|.+|+|-| |++ +...+
T Consensus 30 ~~LTv~EVAe~LgVs~sr----V~~LIr~G~L~AVr~G---r~~rV 68 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSK----VAQQLREGHLVAVRRA---GGVVI 68 (148)
T ss_dssp CEEEHHHHHHHHTCCHHH----HHHHHHTTSCCCEEET---TEEEE
T ss_pred ceEcHHHHHHHhCCCHHH----HHHHHHCCCceEEEEC---CEEEe
Confidence 467899999999999775 556789999976 785 66666
No 240
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=30.71 E-value=85 Score=25.68 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhh-cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 136 LRAYKQILQAYR-SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 136 ~~~l~qyl~pYs-~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.-.+..++.... .+++..+|+.+|+|...+-..|..|...|-+.-. .++....
T Consensus 10 ~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~---~~~~Y~l 63 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK---KDKRYVP 63 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC---TTSCEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC---CCCcEEE
Confidence 334555665544 6999999999999999999999999999988653 3455555
No 241
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=30.57 E-value=11 Score=32.20 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=0.0
Q ss_pred hcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccceeecc
Q psy396 147 RSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 147 s~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
.=|+++.+++.| ++++++|.+.|..|+.+|.|--.||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 568888999999 79999999999999999999777774
No 242
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=30.42 E-value=47 Score=23.54 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=29.3
Q ss_pred CCchhhhhhhHHHHHHHHchhcCHHHHHHHHhccCC
Q psy396 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVP 40 (239)
Q Consensus 5 ~~dw~~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~ 40 (239)
..+|....+...-.|..+...|+|++|...|-.+..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777777777788999999999999999988743
No 243
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=30.10 E-value=60 Score=21.04 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.8
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
...+...+|+.+|+|...|...+.+.+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678999999999999999988876553
No 244
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=29.66 E-value=1.6e+02 Score=21.36 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=48.0
Q ss_pred HhHHHHHHHHHHHHHHHHh-hhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 125 PHYRHYVQEMRLRAYKQIL-QAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 125 ~h~~~l~~~ir~~~l~qyl-~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
......|-.+|..++..|- .|..-++.......+.-++..+.+...=|=.=|-||.-+|+
T Consensus 43 ~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN~~v~~ 103 (104)
T 2fq3_A 43 SKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVDS 103 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSSSCC--
T ss_pred CCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeeccCCCC
Confidence 3568999999999999997 78999999999999977888887776666666777776664
No 245
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=29.52 E-value=66 Score=30.40 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
..+..+++|+.....++...+|+.+|++...+...|.+|..
T Consensus 430 ~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~ 470 (583)
T 3lmm_A 430 YRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQ 470 (583)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999988
No 246
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=29.33 E-value=95 Score=22.03 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.8
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
...++..+|+.+|+|...|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5689999999999999999888766554
No 247
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.29 E-value=79 Score=24.13 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=31.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
++...+|+.+|++...+-..|.+|...|-|.-.-|..++
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 125 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDR 125 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-----
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCC
Confidence 999999999999999999999999999998765554443
No 248
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=29.02 E-value=58 Score=24.72 Aligned_cols=28 Identities=11% Similarity=0.347 Sum_probs=0.0
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
..++-..+|..+|++.+.+-+.+.++|.
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~l~~ 194 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKKYIS 194 (194)
T ss_dssp ----------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHhhcC
Confidence 4578899999999999999988888763
No 249
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.93 E-value=51 Score=22.50 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.6
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
++-.|..||+.+|++.+.|..|..+.=. |++
T Consensus 31 s~eei~~LA~~lgL~~~VVrVWFqNrRa-~~~ 61 (71)
T 2da7_A 31 NSDELLKISIAVGLPQEFVKEWFEQRKV-YQY 61 (71)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhhccc-ccc
Confidence 5567999999999999999999988653 444
No 250
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.70 E-value=97 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=23.6
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFA 173 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI 173 (239)
+.-.+...+|+.+|+|+..|...+.+..
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567999999999999999988876654
No 251
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.38 E-value=14 Score=21.88 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHH
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
..+...+|+.+|+|...+-.++..
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 378999999999999988887654
No 252
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=28.28 E-value=1.9e+02 Score=21.81 Aligned_cols=100 Identities=9% Similarity=-0.003 Sum_probs=54.9
Q ss_pred hhHHHHHHHHchhcCHHHHHHHHhccCCCCCCccccCHhHHHHHHHHHHHHcCChhHHHHccccchhHHHHhhhhhh---
Q psy396 13 KLKAYEGVYCLAIRQYCRAAELFVDVVPTFESYELAEFGTIIRYTVLACMIALPRYNLRKKLMHHGVMAQALHSQYR--- 89 (239)
Q Consensus 13 kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~~e~~s~~di~~Y~~Lc~Las~~R~elk~~ll~s~~~~~~~e~~~p--- 89 (239)
......|..++..|+|.+|...|-.+..-... ....+..+.+.|-....+-.+-.. .+.+.++. .|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~------~~~~al~~-~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN----QDSVTAYNCGVCADNIKKYKEAAD------YFDIAIKK-NYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----CCHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHT-TCSHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHHHhhcHHHHHH------HHHHHHHh-CcchH
Confidence 34456899999999999999999988533210 011233444445444433222111 12233333 22
Q ss_pred -HHHHHHHHHH-hchHHHHHHHHHHHHhhhccCcch
Q psy396 90 -DLREYFVSLY-DGHYFEFLKCLAAVEQDMKRDPLL 123 (239)
Q Consensus 90 -~l~~li~af~-~~~y~~~~~~L~~~~~~l~~D~~L 123 (239)
....+...+. ..+|....+.+.+.......++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 2444555543 677777777777665555555544
No 253
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=28.18 E-value=76 Score=21.30 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=30.0
Q ss_pred HHhhh-hhcccHHHHHHHhCCCHHHHHHHHHHHHHcC
Q psy396 141 QILQA-YRSLSLKYMAQCFGVSVEFIEKEVARFAAAG 176 (239)
Q Consensus 141 qyl~p-Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g 176 (239)
.++.| =+..+|...|..-|++++.+.++|.+.+.+.
T Consensus 32 c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~ 68 (73)
T 2k5e_A 32 CIGCMGAQNESLEQGANAHGLNVEDILRDLNALALEH 68 (73)
T ss_dssp GGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred CCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35566 2468999999999999999999999988764
No 254
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=27.24 E-value=2.6e+02 Score=22.92 Aligned_cols=88 Identities=8% Similarity=0.024 Sum_probs=49.8
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHhhh---ccCcchhHhHHHHHHHHH----------HHHHHHHhhhh--hcccHHHHH
Q psy396 91 LREYFVSLYDGHYFEFLKCLAAVEQDM---KRDPLLNPHYRHYVQEMR----------LRAYKQILQAY--RSLSLKYMA 155 (239)
Q Consensus 91 l~~li~af~~~~y~~~~~~L~~~~~~l---~~D~~L~~h~~~l~~~ir----------~~~l~qyl~pY--s~v~l~~mA 155 (239)
..+.+..+..++.......+....... ..+.+-..++......+. ...+...++.| ..++++.+|
T Consensus 192 ~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a 271 (324)
T 1hqc_A 192 AALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLA 271 (324)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 334444444555555555554432211 122333344444443321 23444444443 356799999
Q ss_pred HHhCCCHHHHHHHHHH-HHHcCcc
Q psy396 156 QCFGVSVEFIEKEVAR-FAAAGRL 178 (239)
Q Consensus 156 ~~fg~s~~~lE~~L~~-lI~~g~l 178 (239)
+.+|++...+..++.+ +|..|-+
T Consensus 272 ~~lgi~~~tl~~~l~~~~i~~~li 295 (324)
T 1hqc_A 272 TALSEDPGTLEEVHEPYLIRQGLL 295 (324)
T ss_dssp HHTTSCHHHHHHHTHHHHHHTTSE
T ss_pred HHhCCCHHHHHHHHhHHHHHhcch
Confidence 9999999999999998 6666555
No 255
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=27.24 E-value=63 Score=21.93 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=25.5
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHc
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAA 175 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~ 175 (239)
..+|...|..-|++++.+.++|.++|.+
T Consensus 38 ~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 38 GESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp CSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999999864
No 256
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=27.07 E-value=1.1e+02 Score=18.40 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=20.5
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVA 170 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~ 170 (239)
...+...+|+.+|+|...+..++.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456899999999999999887763
No 257
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=27.02 E-value=64 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=27.2
Q ss_pred CCchhhhhhhHHHHHHHHchhcCHHHHHHHHhccCC
Q psy396 5 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVVP 40 (239)
Q Consensus 5 ~~dw~~~~kl~~~~Gl~~l~~~~y~~Aa~~F~~~~~ 40 (239)
+++|.........-|..+...|+|.+|...|-.+..
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344544466666778888999999999999988843
No 258
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=26.97 E-value=1.9e+02 Score=21.36 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=36.4
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
.++.+.+|+.+|++...+-..|.+|...|-+.-..|+.++
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 4667899999999999999999999999999888888877
No 259
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=26.71 E-value=52 Score=23.91 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 139 YKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
+.+++.- -.+++...|..||+|+++++.|....=.
T Consensus 42 VV~~v~~-g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 42 VVRGVIY-GLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp HHHHHHH-TTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred HHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444333 5889999999999999999999887543
No 260
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=26.48 E-value=64 Score=24.77 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=34.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++-+.+|..+|++.+.+-+.|.+|..+|-|. ...+.|.+
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i 185 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQL 185 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEE
Confidence 47789999999999999999999999988875 34577777
No 261
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=25.86 E-value=1.3e+02 Score=21.82 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHH
Q psy396 130 YVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 130 l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
.....+...+.+|+.-...++++.+|..+|+|...+.....+
T Consensus 75 ~~~~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 75 QHRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334445555566665346899999999999998777766544
No 262
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=25.70 E-value=53 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=34.0
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.++-+.+|..+|++.+.+-+.+.+|..+|-|. ...+.|.+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i 178 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYL 178 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEE
Confidence 47888999999999999999999999988764 33567777
No 263
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.34 E-value=46 Score=23.01 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=19.1
Q ss_pred hhhhcccHHHHHHHhCCCHHHHHHH
Q psy396 144 QAYRSLSLKYMAQCFGVSVEFIEKE 168 (239)
Q Consensus 144 ~pYs~v~l~~mA~~fg~s~~~lE~~ 168 (239)
.--..++...+|+.+|++...+.++
T Consensus 39 R~~~glsq~elA~~lgvs~~~is~~ 63 (99)
T 2ppx_A 39 RRALKLTQEEFSARYHIPLGTLRDW 63 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 3345788899999999998776554
No 264
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=25.17 E-value=2.9e+02 Score=22.87 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=27.6
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHH-HHHHcCccc
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVA-RFAAAGRLQ 179 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~-~lI~~g~l~ 179 (239)
..+++..+|+.+|++...+++.+. -+|..|-|.
T Consensus 278 ~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~ 311 (338)
T 3pfi_A 278 KPIGLASIAAALSEDENTIEDVIEPYLLANGYIE 311 (338)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEE
T ss_pred CCchHHHHHHHhCCCHHHHHHHHhHHHHHcCcee
Confidence 467899999999999999999998 667666553
No 265
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.17 E-value=79 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.4
Q ss_pred hcccHHHHHHHhCCCHHHHHHHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKEVARFAA 174 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~L~~lI~ 174 (239)
...+...+|+.+|+|...|...+.+.+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998887664
No 266
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.16 E-value=1.8e+02 Score=21.19 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHh-----CCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCF-----GVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~f-----g~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
|..++.-+.+.-..++...+.+.+ +++...|-.-|..|...|-+. +++..+|
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~-~~~~~~~ 69 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD-TLHTDTG 69 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE-EEECTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE-EEEeCCC
Confidence 333433333444578999999998 899999999999999999885 4444444
No 267
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=25.03 E-value=1.3e+02 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.1
Q ss_pred cHHHHHHHhCCC-HHHHHHHHHHHHHcCcc
Q psy396 150 SLKYMAQCFGVS-VEFIEKEVARFAAAGRL 178 (239)
Q Consensus 150 ~l~~mA~~fg~s-~~~lE~~L~~lI~~g~l 178 (239)
+...+|+.+|++ ...+.+++..+-..|-+
T Consensus 27 s~~elA~~lgiss~~tv~~~~~~l~~~~~l 56 (202)
T 1jhf_A 27 TRAEIAQRLGFRSPNAAEEHLKALARKGVI 56 (202)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHHhCCCChHHHHHHHHHHHHCCCc
Confidence 889999999998 88898888877665544
No 268
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=24.91 E-value=1.1e+02 Score=24.99 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhh-cccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 135 RLRAYKQILQAYR-SLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 135 r~~~l~qyl~pYs-~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
|.-.++.++.... .+++..+|+.+|+|...+-..|..|...|-+.- |..++....
T Consensus 7 r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~--~~~~~~Y~l 62 (241)
T 2xrn_A 7 RAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEA--LGPAGGFRL 62 (241)
T ss_dssp HHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEE--CGGGCEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCCeEEE
Confidence 3344556665543 699999999999999999999999999998854 344565555
No 269
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=24.88 E-value=53 Score=29.24 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=30.0
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
..+++++.++++.|++.+.+...|..|+..+++.
T Consensus 213 ~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k 246 (382)
T 3dpl_C 213 REKISFENLKLATELPDAELRRTLWSLVAFPKLK 246 (382)
T ss_dssp TCCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCS
T ss_pred CCcCcHHHHHHHHCcCHHHHHHHHHHHhcccchh
Confidence 5789999999999999999999999998865543
No 270
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=24.77 E-value=1.8e+02 Score=20.22 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=37.2
Q ss_pred HHHHHHhhh--hhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcccee
Q psy396 137 RAYKQILQA--YRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCK 181 (239)
Q Consensus 137 ~~l~qyl~p--Ys~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ar 181 (239)
..+.+++.- -.-|+...+|+.+|++...+-.-|-.|...|-|...
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 345566665 347999999999999999999999999999988643
No 271
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=24.74 E-value=1.3e+02 Score=21.67 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=26.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
+..+.++...|++.+.++..+..++..|++
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~ 47 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQV 47 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcE
Confidence 334999999999999999999999999885
No 272
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=24.73 E-value=1.2e+02 Score=19.85 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=36.4
Q ss_pred HHHHhhhhhcccHHHHHHHhC----CCHHHHHHHHHHHHHcCccceeec
Q psy396 139 YKQILQAYRSLSLKYMAQCFG----VSVEFIEKEVARFAAAGRLQCKID 183 (239)
Q Consensus 139 l~qyl~pYs~v~l~~mA~~fg----~s~~~lE~~L~~lI~~g~l~arID 183 (239)
+..++.....++...+|+.++ ++...+-.-|..|...|-|.-.-|
T Consensus 14 vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 14 VMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec
Confidence 344444456899999999996 789999999999999999976544
No 273
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=24.67 E-value=65 Score=24.11 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCC
Q psy396 151 LKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187 (239)
Q Consensus 151 l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~ 187 (239)
...+|+.+|+++..||+.+...|...--+|..|..+.
T Consensus 51 Yp~IA~k~~TT~s~VEraIR~aIe~aw~~g~~~~l~~ 87 (120)
T 1fc3_A 51 YPDIAKKYNTTASRVERAIRHAIEVAWSRGNLESISS 87 (120)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHSSCTTTTHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4677999999999999999999987655665555433
No 274
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=24.50 E-value=88 Score=19.50 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.1
Q ss_pred cHHHHHHHhCCCHHHHHHHH
Q psy396 150 SLKYMAQCFGVSVEFIEKEV 169 (239)
Q Consensus 150 ~l~~mA~~fg~s~~~lE~~L 169 (239)
+...+|+.+|+|...+-+++
T Consensus 15 s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 89999999999999887776
No 275
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=24.39 E-value=2e+02 Score=20.57 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=22.4
Q ss_pred hHHHHHHHHchhcCHHHHHHHHhccCC
Q psy396 14 LKAYEGVYCLAIRQYCRAAELFVDVVP 40 (239)
Q Consensus 14 l~~~~Gl~~l~~~~y~~Aa~~F~~~~~ 40 (239)
.-...|..++..|+|..|...|-.+..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344578889999999999999998854
No 276
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=24.30 E-value=2.4e+02 Score=21.58 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=34.6
Q ss_pred cccHHHHHHHhC--------------CCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 148 SLSLKYMAQCFG--------------VSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 148 ~v~l~~mA~~fg--------------~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
.+....||+.|| +|-..+.+.|.+|-..|-+..+ +..|..+.
T Consensus 67 ~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~--~~~G~~Vt 122 (150)
T 2v7f_A 67 PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV--PGKGRVIT 122 (150)
T ss_dssp SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe--CCCceEEC
Confidence 445599999999 9999999999999999998754 44566665
No 277
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=24.10 E-value=46 Score=21.56 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHH
Q psy396 149 LSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
++...+|+.||+|...+..|...
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67889999999999998877654
No 278
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=24.07 E-value=76 Score=22.37 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhhhccCcchhHhHHHHHHHH
Q psy396 90 DLREYFVSLYDGHYFEFLKCLAAVEQDMKRDPLLNPHYRHYVQEM 134 (239)
Q Consensus 90 ~l~~li~af~~~~y~~~~~~L~~~~~~l~~D~~L~~h~~~l~~~i 134 (239)
.+.++...|-..+..+..-...++...+..|+-|...+..|.+.+
T Consensus 48 Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~d~~~~~~i~~l~~~l 92 (94)
T 1j1v_A 48 SLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 92 (94)
T ss_dssp CHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 467778878788999999999999999999998888888777665
No 279
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=23.55 E-value=31 Score=26.13 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHH
Q psy396 129 HYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 129 ~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
.+++.+..|++.-| |+..=-+--++++||+|.+++++-+.+
T Consensus 5 e~~~~MK~ril~S~--~w~edviiPlSk~lgis~ee~~~I~~~ 45 (126)
T 1nxh_A 5 ELMRLMKRRILESY--RWQEDVVKPLSRELEIDVEEFQDILMD 45 (126)
T ss_dssp HHHHHHHHHHHTSH--HHHHHTTTTTTTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--hHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 46677777776554 223333345788999999999988765
No 280
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=23.24 E-value=92 Score=22.17 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHH-HHHHHHcCcc
Q psy396 127 YRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKE-VARFAAAGRL 178 (239)
Q Consensus 127 ~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~-L~~lI~~g~l 178 (239)
-..=++.++..++.+|.+.|...+...+...| ..+++. +.++|+++.+
T Consensus 44 R~~al~~ik~~v~~~l~~e~~~~~~~~i~~~~----~~lek~~vR~~IL~e~~ 92 (104)
T 1whu_A 44 RDEAVNKIRLDTEEHLKEKFPEVDQFEIIESF----NIVAKEVFRSIILNEYK 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSSSCHHHHHHHH----HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHH----HHHHHHHHHHHHHCCCc
Confidence 35667777777777774433222233344444 345444 4678888643
No 281
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.19 E-value=65 Score=21.04 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHH
Q psy396 149 LSLKYMAQCFGVSVEFIEKEV 169 (239)
Q Consensus 149 v~l~~mA~~fg~s~~~lE~~L 169 (239)
+++..+|+..|+|...|-..|
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 478899999999988776655
No 282
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=23.14 E-value=85 Score=20.62 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.2
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q psy396 150 SLKYMAQCFGVSVEFIEKEVA 170 (239)
Q Consensus 150 ~l~~mA~~fg~s~~~lE~~L~ 170 (239)
+...+|+.+|++...|-+++.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 899999999999999988873
No 283
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=23.09 E-value=17 Score=34.44 Aligned_cols=44 Identities=18% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 136 LRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 136 ~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
.+.+..|++-+.+|+-+.+++.+|+|...+...|.+|+.+|.|.
T Consensus 518 ~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~ 561 (583)
T 3lmm_A 518 TNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVV 561 (583)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 35688999999999999999999999999999999999999883
No 284
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=22.21 E-value=1.8e+02 Score=23.97 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHh-hhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccc
Q psy396 128 RHYVQEMRLRAYKQIL-QAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQ 179 (239)
Q Consensus 128 ~~l~~~ir~~~l~qyl-~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~ 179 (239)
..-...+..++...|- .+|.--....+++.+|++...+.+.|..|+..|++-
T Consensus 136 ~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv 188 (258)
T 1lva_A 136 SETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLV 188 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3455556666655552 567777899999999999999999999999988773
No 285
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=22.11 E-value=1.9e+02 Score=19.61 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHH-HHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVE-FIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~-~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
|+..|.+|++..-.-.--.||+++|+... +|...|=.|=..+.++. |....+=.+
T Consensus 11 ~ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~--Dek~~~W~i 66 (72)
T 3eyi_A 11 REEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDM--DEQSKAWTI 66 (72)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEE--CTTTCEEEE
T ss_pred hHHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcCC--CCCCCceeE
Confidence 46678899998888888899999999655 59999999999888843 665555444
No 286
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=21.81 E-value=67 Score=21.91 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=23.7
Q ss_pred HHHHHHHchhcCHHHHHHHHhccCCCCCC
Q psy396 16 AYEGVYCLAIRQYCRAAELFVDVVPTFES 44 (239)
Q Consensus 16 ~~~Gl~~l~~~~y~~Aa~~F~~~~~~f~~ 44 (239)
+..|-.++.+|++..|+..|+.+..=+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 56788889999999999999999655443
No 287
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.72 E-value=64 Score=21.33 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.0
Q ss_pred cHHHHHHHhCCCHHHHHH
Q psy396 150 SLKYMAQCFGVSVEFIEK 167 (239)
Q Consensus 150 ~l~~mA~~fg~s~~~lE~ 167 (239)
+|..+|+.||+++++|.+
T Consensus 25 TL~~IA~~~~~~~~~l~~ 42 (77)
T 2djp_A 25 TLAGLALKYGVTMEQIKR 42 (77)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHH
Confidence 578999999999887654
No 288
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=21.62 E-value=78 Score=29.01 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 134 MRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 134 ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-|...+.+++--...++++.+|+.||+|.-.|...|..+=..-.-...|....+.+..
T Consensus 18 ~R~~~IL~~L~~~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L 75 (485)
T 3sqn_A 18 LRQIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRL 75 (485)
T ss_dssp HHHHHHHHHHHHCCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEE
Confidence 5677777777667779999999999999999999887653321112345444443443
No 289
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=21.55 E-value=1.4e+02 Score=25.72 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHhh--hhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCc
Q psy396 139 YKQILQ--AYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGR 177 (239)
Q Consensus 139 l~qyl~--pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~ 177 (239)
+.+++. +-.-++-+.+|+.||+|-..|-+.|..|-..|-
T Consensus 8 iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 8 VLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 344552 345688999999999999999999999988765
No 290
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=21.45 E-value=1.3e+02 Score=25.04 Aligned_cols=39 Identities=8% Similarity=0.069 Sum_probs=34.2
Q ss_pred HHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCcc
Q psy396 140 KQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRL 178 (239)
Q Consensus 140 ~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l 178 (239)
.++++.-..|+.+.++..+|++.+-....|..|+.+|.+
T Consensus 160 Lela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gll 198 (234)
T 3cuq_A 160 LQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLA 198 (234)
T ss_dssp HHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCE
Confidence 345566678999999999999999999999999999976
No 291
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=21.38 E-value=3.1e+02 Score=21.77 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecc
Q psy396 129 HYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDS 184 (239)
Q Consensus 129 ~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~ 184 (239)
.+-+..|.+++. ++. ....+...+|+.+|+|...+-.-|..|...|-+..+-+.
T Consensus 11 aL~~~~rl~IL~-~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 11 VLGNETRRRILF-LLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp HHHSHHHHHHHH-HHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HhCCHHHHHHHH-HHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 333444444443 343 467899999999999999999999999999999887663
No 292
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=21.33 E-value=1.2e+02 Score=24.59 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHH
Q psy396 135 RLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVA 170 (239)
Q Consensus 135 r~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~ 170 (239)
|-+.+...+..+-.-+-..||+++|+|...|-..|.
T Consensus 29 rg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 29 RGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp HHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 445677888888889999999999999776555443
No 293
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=21.22 E-value=1.4e+02 Score=21.91 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=41.0
Q ss_pred hhhhcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 144 QAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 144 ~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
-.|+-|+-..+++.|++...-...-|..|-..|.|.--.-.....|++
T Consensus 55 pk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 55 PTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp SSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred cCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 458999999999999999999999999999999997766555566776
No 294
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=20.86 E-value=2.6e+02 Score=26.09 Aligned_cols=71 Identities=11% Similarity=0.233 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHH---hhhc-cCcchhHhHHHHHHHHHHHHHHHHhhhhhcccHHHHHHHhCCCHHHHHHHHHHHH
Q psy396 102 HYFEFLKCLAAVE---QDMK-RDPLLNPHYRHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFA 173 (239)
Q Consensus 102 ~y~~~~~~L~~~~---~~l~-~D~~L~~h~~~l~~~ir~~~l~qyl~pYs~v~l~~mA~~fg~s~~~lE~~L~~lI 173 (239)
+|+.|....++.. ..+. -|+-|...++.-+...-..+|..|++-|...+ .+-.+-...+++.+|..|.+|.
T Consensus 489 ~fk~FN~~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~-k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 489 KFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSF-KNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS-SSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCcccCCHHHHHHHHHHhc
Confidence 5666655555543 2333 49999999998888888999999999998832 3334455679999999998875
No 295
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.79 E-value=1.8e+02 Score=21.91 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.8
Q ss_pred hhcccHHHHHHHhCCCHHHHHHHHHHHH
Q psy396 146 YRSLSLKYMAQCFGVSVEFIEKEVARFA 173 (239)
Q Consensus 146 Ys~v~l~~mA~~fg~s~~~lE~~L~~lI 173 (239)
+...+...+|+.+|+|+..|...+.+..
T Consensus 154 ~~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3568899999999999999998887654
No 296
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=20.67 E-value=1.5e+02 Score=22.85 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=42.9
Q ss_pred hhhh-hcccHHHHHHHhCCCHHHHHHHHHHHHHcCccceeecccCCEEEE
Q psy396 143 LQAY-RSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVT 191 (239)
Q Consensus 143 l~pY-s~v~l~~mA~~fg~s~~~lE~~L~~lI~~g~l~arID~~~~~l~~ 191 (239)
+-.| +-|+...+++.|+++..-...-|..|-..|.|.--.-+....|++
T Consensus 57 Vpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 57 PSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYS 106 (143)
T ss_dssp CTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred hcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEe
Confidence 3568 899999999999999999999999999999998777666777777
No 297
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=20.50 E-value=87 Score=24.58 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=25.5
Q ss_pred hcccHHHHHHHhC--CCHHHHHHHHHHHHHc
Q psy396 147 RSLSLKYMAQCFG--VSVEFIEKEVARFAAA 175 (239)
Q Consensus 147 s~v~l~~mA~~fg--~s~~~lE~~L~~lI~~ 175 (239)
..|+++.+|+.++ ++.+.+++.|..|..+
T Consensus 21 ~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~ 51 (162)
T 1t6s_A 21 EPVNLQTLSQITAHKFTPSELQEAVDELNRD 51 (162)
T ss_dssp SCBCHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCCCHHHHHHHHHHHHHH
Confidence 3599999999999 9999999999888763
No 298
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=20.48 E-value=1.2e+02 Score=21.05 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=31.0
Q ss_pred hhcccHHHHHHHh-CCCHHHHHHHHHHHHHcCccce
Q psy396 146 YRSLSLKYMAQCF-GVSVEFIEKEVARFAAAGRLQC 180 (239)
Q Consensus 146 Ys~v~l~~mA~~f-g~s~~~lE~~L~~lI~~g~l~a 180 (239)
=+..-+..+++.| +..+-++.+.+..||.+|+|.-
T Consensus 19 KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~ley 54 (78)
T 1ucr_A 19 KSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEY 54 (78)
T ss_dssp SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccchHHHHHHHccccCHHHHHHHHHHHHhcCceEE
Confidence 3467788999999 9999999999999999999853
No 299
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=20.20 E-value=1.3e+02 Score=19.75 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=24.6
Q ss_pred HHHHHh---hhhhcc-cHHHHHHHhCCCHHHHHHHHHH
Q psy396 138 AYKQIL---QAYRSL-SLKYMAQCFGVSVEFIEKEVAR 171 (239)
Q Consensus 138 ~l~qyl---~pYs~v-~l~~mA~~fg~s~~~lE~~L~~ 171 (239)
.|..++ .+|-+. ....+|+.+|++...|+-|...
T Consensus 14 ~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 14 ILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444555 235444 4889999999999999998754
No 300
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=20.19 E-value=1.8e+02 Score=18.68 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=14.7
Q ss_pred hcccHHHHHHHhCCCHHHHHHH
Q psy396 147 RSLSLKYMAQCFGVSVEFIEKE 168 (239)
Q Consensus 147 s~v~l~~mA~~fg~s~~~lE~~ 168 (239)
..++...+|+.+|+|...+-++
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~ 45 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAAL 45 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHH
Confidence 4667777777777776655444
Done!