RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy396
         (239 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 128 RHYVQEMRLRAYKQILQAYRSLSLKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAG 187
              V E  L +     + Y +++ + +     +     EK  ++    GR+   ID + G
Sbjct: 13  DRAVIEHNLLS---ASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDG 69

Query: 188 NVVTTS 193
            V   +
Sbjct: 70  IVHFET 75


>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 134

 Score = 26.5 bits (58), Expect = 1.9
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 151 LKYMAQCFGVSVEFIEKEVARFAAAGRLQCKIDSVAGNVVTTSHISEKGD 200
           +KY    F      IE  VA     GR++ +  S  G ++    +   G 
Sbjct: 43  VKYERVHFERDASSIEVRVASDTPGGRIEIRTGSPTGTLLGDVQVPNTGG 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 924,302
Number of extensions: 41977
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 6
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)