BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3960
(351 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V Y KGY + +Q CGSCW+F + GA+EG K KL LS Q L+DC N+G
Sbjct: 104 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 161
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ K+ G+ ++D Y PY+GQ+ C T A G+ + +E AL
Sbjct: 162 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 220
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A+ GPVSVAIDAS SF FY GVYYDE CN+ D L+HAVLAVGYG G +W
Sbjct: 221 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 278
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 279 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V Y KGY + +Q CGSCW+F + GA+EG K KL LS Q L+DC N+G
Sbjct: 7 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ K+ G+ ++D Y PY+GQ+ C T A G+ + +E AL
Sbjct: 65 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A+ GPVSVAIDAS SF FY GVYYDE CN+ D L+HAVLAVGYG G +W
Sbjct: 124 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 181
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 182 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V Y KGY + +Q CGSCW+F + GA+EG K KL LS Q L+DC N+G
Sbjct: 5 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ K+ G+ ++D Y PY+GQ+ C T A G+ + +E AL
Sbjct: 63 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A+ GPVSVAIDAS SF FY GVYYDE CN+ D L+HAVLAVGYG G +W
Sbjct: 122 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 180 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V Y KGY + +Q CGSCW+F + GA+EG K KL LS Q L+DC N+G
Sbjct: 4 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 61
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ K+ G+ ++D Y PY+GQ+ C T A G+ + +E AL
Sbjct: 62 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 120
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A+ GPVSVAIDAS SF FY GVYYDE CN+ D L+HAVLAVGYG G +W
Sbjct: 121 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 178
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 179 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V Y KGY + +Q CGSCW+F + GA+EG K KL LS Q L+DC N+G
Sbjct: 3 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 60
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ K+ G+ ++D Y PY+GQ+ C T A G+ + +E AL
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 119
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A+ GPVSVAIDAS SF FY GVYYDE CN+ D L+HAVLAVGYG G +W
Sbjct: 120 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGIQKGNKHWI 177
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 178 IKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 131/216 (60%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
+ Y KGY + +Q CGSCW+F + GA+EG K KL LS Q L+DC N+G
Sbjct: 5 IDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ ++ G+ ++D Y PY+GQD C T A G+ + +E AL
Sbjct: 63 CGGGYMTNAFQYVQRNRGIDSEDAY-PYVGQDESCMYNPTGKAAKCRGYREIPEGNEKAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A+ GPVSVAIDAS SF FY GVYYDE C S D L+HAVLAVGYG G +W
Sbjct: 122 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDENC--SSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 180 IKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 130/216 (60%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V Y KGY + +Q CGSCW+F + GA+EG K KL LS Q L+DC N+G
Sbjct: 5 VDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ K+ G+ ++D Y PY+GQ+ C T A G+ + +E AL
Sbjct: 63 CGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A+ GPVSVAIDAS SF FY GVYYDE CN+ D L+HAVLAVGYGE G +W
Sbjct: 122 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS--DNLNHAVLAVGYGESKGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WG GY+ M+ NN CG+ ++ M
Sbjct: 180 IKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 129/217 (59%), Gaps = 10/217 (4%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGSCW+F TGA+EG + K KL LS+Q L+DCS GN G
Sbjct: 5 VDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG R++Q++ ++ GL +++ Y PY+ D C + A TGF V P E AL
Sbjct: 65 CNGGFMARAFQYVKENGGLDSEESY-PYVAVDEICKYRPENSVAQDTGFTVVAPGKEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVA+DA SF FY +G+Y++ C S LDH VL VGYG D
Sbjct: 124 MKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDC--SSKNLDHGVLVVGYGFEGANSDNS 181
Query: 313 PYWQVKNSWSTYWGNQGYV-LMSIKDNNCGVMTAPTY 348
YW VKNSW WG+ GYV + K+N+CG+ TA +Y
Sbjct: 182 KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASY 218
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 7/218 (3%)
Query: 136 AIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGN 195
A V + + + DQ CGS WSF TTGAVEG ++ +L LS+Q LIDCS YGN
Sbjct: 117 AASVDWRSNAVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGN 176
Query: 196 NGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDA 255
GCDGG ++ +I +G+ ++ Y PY Q YC ++ + T++G+ ++ E++
Sbjct: 177 AGCDGGWMDSAFSYIHDYGIMSESAY-PYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENS 235
Query: 256 LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYW 315
L A+ + GPV+VAIDA+ + FY G++YD+ CN S L+H VL VGYG +G+ YW
Sbjct: 236 LADAVGQAGPVAVAIDATDE-LQFYSGGLFYDQTCNQSD--LNHGVLVVGYGSDNGQDYW 292
Query: 316 QVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTYVTM 351
+KNSW + WG GY +++ NNCG+ TA +Y +
Sbjct: 293 ILKNSWGSGWGESGY-WRQVRNYGNNCGIATAASYPAL 329
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
+ Y KGY + +Q CGSCW+F + GA+EG L L+ Q L+DC N+G
Sbjct: 5 IDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCV--SENDG 62
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C GG ++Q++ ++ G+ ++D Y PY+GQD C T A G+ + +E AL
Sbjct: 63 CGGGYMTNAFQYVQRNRGIDSEDAY-PYVGQDESCMYNPTGKAAKCRGYREIPEGNEAAL 121
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ 316
K A+A GPVSVAIDAS SF FY GVYYDE C S D L+HAVLAVGYG G +W
Sbjct: 122 KRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENC--SSDALNHAVLAVGYGIQAGNKHWI 179
Query: 317 VKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 351
+KNSW WGN GY+LM+ NN CG+ ++ M
Sbjct: 180 IKNSWGESWGNAGYILMARNKNNACGIANLASFPKM 215
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K KL LS+Q L+DCS GN G
Sbjct: 5 VDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG R++Q++ ++ GL +++ Y PY+ D C + A TGF V P E AL
Sbjct: 65 CNGGFMARAFQYVKENGGLDSEESY-PYVAVDEICKYRPENSVAQDTGFTVVAPGKEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVA+DA SF FY +G+Y++ C S LDH VL VGYG D
Sbjct: 124 MKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDC--SSKNLDHGVLVVGYGFEGANSDNS 181
Query: 313 PYWQVKNSWSTYWGNQGYV-LMSIKDNNCGVMTAPTY 348
YW VKNSW WG+ GYV + K+N+CG+ TA +Y
Sbjct: 182 KYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASY 218
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGSCW+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A TGFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGSCW+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 6 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 65
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A TGFV++ P E AL
Sbjct: 66 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 124 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 181
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGSCW+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 43 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 102
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A GFV++ P E AL
Sbjct: 103 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 160
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 161 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 218
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 219 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 118/199 (59%), Gaps = 3/199 (1%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F TTGA+E A + K+ L++Q L+DC+ + N+GC GG +++++I
Sbjct: 19 NQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYI 78
Query: 211 M-KHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
G+ +D Y PY GQD +C A A + N+T N E+A+ A+A + PVS A
Sbjct: 79 RYNKGIMGEDTY-PYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFA 137
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+ + F Y G+Y C+ +PD ++HAVLAVGYGE +G PYW VKNSW WG G
Sbjct: 138 FEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNG 196
Query: 330 YVLMSIKDNNCGVMTAPTY 348
Y L+ N CG+ +Y
Sbjct: 197 YFLIERGKNMCGLAACASY 215
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 97 VDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEG 156
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A GFV++ P E AL
Sbjct: 157 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 214
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E DG
Sbjct: 215 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDGN 272
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 273 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGSCW+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A GFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 160 bits (406), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 10/206 (4%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGSCW+F TTGA+EGA+ K KL LS+Q L+DCS GN C GGE ++Q++
Sbjct: 24 DQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYV 83
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ G +D PYL +D C + + GF +V SE A+K ALAK PVS+AI
Sbjct: 84 LDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAALAKS-PVSIAI 142
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQ 328
+A Q F FY GV +D C LDH VL VGYG + K +W +KNSW T WG
Sbjct: 143 EADQMPFQFYHEGV-FDASCGTD---LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRD 198
Query: 329 GYVLMSI---KDNNCGVMTAPTYVTM 351
GY+ M++ ++ CG++ ++ M
Sbjct: 199 GYMYMAMHKGEEGQCGLLLDASFPVM 224
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A TGFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 6 VDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 65
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A TGFV++ P E AL
Sbjct: 66 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 123
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 124 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 181
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 182 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A TGFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 101 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 160
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A GFV++ P E AL
Sbjct: 161 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 218
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 219 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNN 276
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 277 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 157 bits (398), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 11/220 (5%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A GFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGK 312
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG E D
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDDN 180
Query: 313 PYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 181 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 19 QGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 79 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 22 QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 81
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 82 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 141
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 142 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 198
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 199 IRMARNKGNHCGIASFPSY 217
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 20 QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 79
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 80 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 196
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 197 IRMARNKGNHCGIASFPSY 215
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 19 QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 79 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 20 QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 79
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 80 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 196
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 197 IRMARNKGNHCGIASFPSY 215
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 115/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 19 QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 79 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWG-YGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 19 QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + ED LK A+A GPVSV +
Sbjct: 79 IDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 19 QGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + ED LK A+A GPVSV +
Sbjct: 79 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+ W+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 117 QGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 176
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 177 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 236
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 237 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 293
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 294 IRMARNKGNHCGIASFPSY 312
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 119/218 (54%), Gaps = 8/218 (3%)
Query: 131 KASKDAIP--VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALI 187
+A+ A+P + + GY + DQ CGS W+F TTG +EG Y + S+Q L+
Sbjct: 86 EANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLV 145
Query: 188 DCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVN 247
DCS +GNNGC GG +YQ++ + GL T+ Y PY + C A +TGF
Sbjct: 146 DCSRPWGNNGCGGGLMENAYQYLKQFGLETESSY-PYTAVEGQCRYNKQLGVAKVTGFYT 204
Query: 248 VTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG 307
V SE LK + GP +VA+D + F Y +G+Y + C SP ++HAVLAVGYG
Sbjct: 205 VHSGSEVELKNLVGAEGPAAVAVDV-ESDFMMYRSGIYQSQTC--SPLRVNHAVLAVGYG 261
Query: 308 ELDGKPYWQVKNSWSTYWGNQGYVLM-SIKDNNCGVMT 344
G YW VKNSW WG +GY+ M + N CG+ +
Sbjct: 262 TQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIAS 299
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+ W+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 20 QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 79
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 80 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 196
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 197 IRMARNKGNHCGIASFPSY 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+ W+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 21 QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 80
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 81 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 140
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 141 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 197
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 198 IRMARNKGNHCGIASFPSY 216
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+ W+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 19 QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 79 IDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 114/199 (57%), Gaps = 5/199 (2%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQWI 210
Q CG+ W+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+I
Sbjct: 19 QGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 78
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ + D PY D C + AT + + + ED LK A+A GPVSV +
Sbjct: 79 IDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +GY
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 195
Query: 331 VLMSI-KDNNCGVMTAPTY 348
+ M+ K N+CG+ + P+Y
Sbjct: 196 IRMARNKGNHCGIASFPSY 214
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 144 bits (362), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/217 (40%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CG+ ++F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A GFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDVGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGEL-DGKPYW 315
A+A GP+SVAIDA +SF FY G+Y+ C++S L+HA+L VGYG + + + YW
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSS--LNHAMLVVGYGFISNNQKYW 180
Query: 316 QVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 181 LVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 116/217 (53%), Gaps = 13/217 (5%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KG S+ DQ CGSCW+F T AVEG +K KL LS+Q L+DC N G
Sbjct: 6 VDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ-NQG 64
Query: 198 CDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATA-TMTGFVNVTPNSEDAL 256
C+GG ++++I + G T + PY D C ++ A A ++ G NV N E+AL
Sbjct: 65 CNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENAL 124
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYW 315
A+A PVSVAIDA F FY GV+ C LDH V VGYG +DG YW
Sbjct: 125 LKAVANQ-PVSVAIDAGGSDFQFYSEGVFTG-SCGTE---LDHGVAIVGYGTTIDGTKYW 179
Query: 316 QVKNSWSTYWGNQGYVLM----SIKDNNCGVMTAPTY 348
VKNSW WG +GY+ M S K+ CG+ +Y
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 119/222 (53%), Gaps = 20/222 (9%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KG + DQ CGSCW+F T +VEG ++ L LS+Q LIDC N+G
Sbjct: 8 VDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA-DNDG 66
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIA----NTTATATMTGFVNVTPNS 252
C GG ++++I + GL T+ Y PY C++A N+ + G +V NS
Sbjct: 67 CQGGLMDNAFEYIKNNGGLITEAAY-PYRAARGTCNVARAAQNSPVVVHIDGHQDVPANS 125
Query: 253 EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDG 311
E+ L A+A PVSVA++AS K+F FY GV+ E C LDH V VGYG DG
Sbjct: 126 EEDLARAVANQ-PVSVAVEASGKAFMFYSEGVFTGE-CGTE---LDHGVAVVGYGVAEDG 180
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNN-----CGVMTAPTY 348
K YW VKNSW WG QGY+ + KD+ CG+ +Y
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVE-KDSGASGGLCGIAMEASY 221
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 6/171 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGSCW+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A TGFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG 307
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYG 171
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 8/203 (3%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
+ + KG S+ DQ CG CW+FG TGA+EG + +L +S+Q ++DC
Sbjct: 5 IDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCD--TXXXX 62
Query: 198 CDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALK 257
GG+ +++W++ +G D PY G D C + N A + G+ NV PNS AL
Sbjct: 63 XXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDL-NKPIAARIDGYTNV-PNSSSALL 120
Query: 258 LALAKHGPVSVAIDASQKSFSFYVN-GVYYDEKCNNSPDGLDHAVLAVGYGE-LDGKPYW 315
A+AK PVSV I S SF Y G++ C++ P +DH VL VGYG YW
Sbjct: 121 DAVAKQ-PVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYW 179
Query: 316 QVKNSWSTYWGNQGYVLMSIKDN 338
VKNSW T WG GY+L+ N
Sbjct: 180 IVKNSWGTEWGIDGYILIRRNTN 202
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 118/220 (53%), Gaps = 19/220 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KG NS+ +Q CGSCW+F AVE ++ +L LS+Q L+DC ++G
Sbjct: 5 VDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD--TASHG 62
Query: 198 CDGGEDFRSYQWIMKHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q+I+ +G + TQ +Y PY C ++ GF VT N+E AL
Sbjct: 63 CNGGWMNNAFQYIITNGGIDTQQNY-PYSAVQGSCKPYRLRVV-SINGFQRVTRNNESAL 120
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGL--DHAVLAVGYGELDGKPY 314
+ A+A PVSV ++A+ F Y +G++ P G +H V+ VGYG GK Y
Sbjct: 121 QSAVASQ-PVSVTVEAAGAPFQHYSSGIF------TGPCGTAQNHGVVIVGYGTQSGKNY 173
Query: 315 WQVKNSWSTYWGNQGYVLM----SIKDNNCGVMTAPTYVT 350
W V+NSW WGNQGY+ M + CG+ P+Y T
Sbjct: 174 WIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 6/171 (3%)
Query: 139 VRYEMKGY-NSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + KGY + +Q CGS W+F TGA+EG + K +L LS+Q L+DCS GN G
Sbjct: 5 VDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 64
Query: 198 CDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDAL 256
C+GG ++Q++ + GL +++ Y PY + C + A TGFV++ P E AL
Sbjct: 65 CNGGLMDYAFQYVQDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKAL 122
Query: 257 KLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG 307
A+A GP+SVAIDA +SF FY G+Y++ C S + +DH VL VGYG
Sbjct: 123 MKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYG 171
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 11/204 (5%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ +Q CGSCW+F T AVEG + L LS+Q L+DC+ N+GC GG ++Q
Sbjct: 18 VKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT--TANHGCRGGWMNPAFQ 75
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
+I+ +G ++ PY GQD C+ ++ + NV ++E +L+ A+A PVSV
Sbjct: 76 FIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ-PVSV 134
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
+DA+ + F Y +G++ CN S +HA+ VGYG + K +W VKNSW WG
Sbjct: 135 TMDAAGRDFQLYRSGIFTG-SCNIS---ANHALTVVGYGTENDKDFWIVKNSWGKNWGES 190
Query: 329 GYVL----MSIKDNNCGVMTAPTY 348
GY+ + D CG+ +Y
Sbjct: 191 GYIRAERNIENPDGKCGITRFASY 214
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 116/222 (52%), Gaps = 18/222 (8%)
Query: 137 IPVRYEMKGYNSLLD---QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGY 193
+P + + +++D Q CG W+F VEG + L LS+Q LIDC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 194 GNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHIA-NTTATATMTGFVNVTPN 251
GCDGG +Q+I+ G+ T+++Y PY QD C +A T+ + NV N
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENY-PYTAQDGDCDVALQDQKYVTIDTYENVPYN 119
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
+E AL+ A+ PVSVA+DA+ +F Y +G++ C + +DHA++ VGYG G
Sbjct: 120 NEWALQTAVTYQ-PVSVALDAAGDAFKQYASGIFTG-PCGTA---VDHAIVIVGYGTEGG 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 348
YW VKNSW T WG +GY M I N CG+ T P+Y
Sbjct: 175 VDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 117/222 (52%), Gaps = 18/222 (8%)
Query: 137 IPVRYEMKGYNSLLD---QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGY 193
+P + + +++D Q CG CW+F VEG + L LS+Q LIDC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 194 GNNGCDGGEDFRSYQWIMKH-GLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPN 251
GC+GG +Q+I+ + G+ T+++Y PY QD C++ T+ + NV N
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENY-PYTAQDGECNVDLQNEKYVTIDTYENVPYN 119
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
+E AL+ A+ PVSVA+DA+ +F Y +G++ C + +DHAV VGYG G
Sbjct: 120 NEWALQTAVTYQ-PVSVALDAAGDAFKQYSSGIFTG-PCGTA---IDHAVTIVGYGTEGG 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 348
YW VKNSW T WG +GY M I N CG+ T P+Y
Sbjct: 175 IDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + +G ++ DQ CGSCW+F G VE +++ L LS+Q L+ C ++G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
C GG +++WI++ + T+D Y PY G C + T AT+TG V + P
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
E + LA +GPV+VA+DAS S+ Y GV C + + LDH VL VGY +
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EALDHGVLLVGYNDSAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
PYW +KNSW+T WG +GY+ ++ N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 19/209 (9%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ DQ CGSCW+F T AVEG + L LS+Q L+DC GCDGG +Q
Sbjct: 16 IKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQ 75
Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPNSEDALKLALAKHGPV 266
+I+ + G+ T+ +Y PY ++ C++ ++ + NV N+E AL+ A+A + PV
Sbjct: 76 FIINNGGINTEANY-PYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVA-YQPV 133
Query: 267 SVAIDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTY 324
SVA++A+ +F Y +G++ P G +DHAV VGYG G YW VKNSW T
Sbjct: 134 SVALEAAGYNFQHYSSGIF------TGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTT 187
Query: 325 WGNQGYVLMSIKDN-----NCGVMTAPTY 348
WG +GY M I+ N CG+ +Y
Sbjct: 188 WGEEGY--MRIQRNVGGVGQCGIAKKASY 214
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + +G ++ DQ CGSCW+F G VE +++ L LS+Q L+ C ++G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
C GG +++WI++ + T+D Y PY G C + T AT+TG V + P
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
E + LA +GPV+VA+DAS S+ Y GV C + + LDH VL VGY +
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EQLDHGVLLVGYNDSAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
PYW +KNSW+T WG +GY+ ++ N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + +G ++ DQ CGSCW+F G VE +++ L L++Q L+ C ++G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
C GG +++WI++ + T+D Y PY G C + T AT+TG V + P
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
E + LA +GPV+VA+DAS S+ Y GV C + + LDH VL VGY +
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EQLDHGVLLVGYNDGAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
PYW +KNSW+T WG +GY+ ++ N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 17/209 (8%)
Query: 139 VRYEMKG-YNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNG 197
V + +G ++ DQ CGSCW+F G VE +++ L L++Q L+ C ++G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD--KTDSG 62
Query: 198 CDGGEDFRSYQWIMKH---GLPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPN 251
C GG +++WI++ + T+D Y PY G C + T AT+TG V + P
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVEL-PQ 120
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
E + LA +GPV+VA+DAS S+ Y GV C + + LDH VL VGY +
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVM--TSCVS--EQLDHGVLLVGYNDGAA 174
Query: 312 KPYWQVKNSWSTYWGNQGYVLMSIKDNNC 340
PYW +KNSW+T WG +GY+ ++ N C
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ DQ CGS W+F T AVEG + L LS+Q L+DC GCDGG +Q
Sbjct: 16 IKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQ 75
Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPNSEDALKLALAKHGPV 266
+I+ + G+ T+ +Y PY ++ C++ ++ + NV N+E AL+ A+A + PV
Sbjct: 76 FIINNGGINTEANY-PYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVA-YQPV 133
Query: 267 SVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWG 326
SVA++A+ +F Y +G++ C + +DHAV VGYG G YW VKNSW T WG
Sbjct: 134 SVALEAAGYNFQHYSSGIFTG-PCGTA---VDHAVTIVGYGTEGGIDYWIVKNSWGTTWG 189
Query: 327 NQGYVLMSIKDN-----NCGVMTAPTY 348
+GY M I+ N CG+ +Y
Sbjct: 190 EEGY--MRIQRNVGGVGQCGIAKKASY 214
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 106/207 (51%), Gaps = 21/207 (10%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
L +Q CGSCW+F T VE ++ L LS+Q L+DCS N+GC GG R+YQ
Sbjct: 16 LKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCS--KKNHGCKGGYFDRAYQ 73
Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVS 267
+I+ + G+ T+ +Y PY C A + G V +E+ALK A+A P
Sbjct: 74 YIIANGGIDTEANY-PYKAFQGPCRAAKK--VVRIDGCKGVPQCNENALKNAVASQ-PSV 129
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTYW 325
VAIDAS K F Y G++ P G L+H V+ VGY GK YW V+NSW +W
Sbjct: 130 VAIDASSKQFQHYKGGIF------TGPCGTKLNHGVVIVGY----GKDYWIVRNSWGRHW 179
Query: 326 GNQGYVLMSIKDNN--CGVMTAPTYVT 350
G QGY M CG+ P Y T
Sbjct: 180 GEQGYTRMKRVGGCGLCGIARLPFYPT 206
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 23/206 (11%)
Query: 145 GYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDF 204
G + DQ++CGSCW+F + G+VE Y ++ K L + S+Q L+DCS NNGC GG
Sbjct: 31 GVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCS--VKNNGCYGGYIT 88
Query: 205 RSYQWIMK-HGLPTQDDYGPYLGQ-DAYCHIANTTATATMTGFVNVTPNSEDALKLALAK 262
++ ++ GL +QDDY PY+ C++ T+ +V++ +D K AL
Sbjct: 89 NAFDDMIDLGGLCSQDDY-PYVSNLPETCNLKRCNERYTIKSYVSIP---DDKFKEALRY 144
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELD------GKP--- 313
GP+S++I AS F+FY G +YD +C +P +HAV+ VGYG D G+
Sbjct: 145 LGPISISIAASD-DFAFYRGG-FYDGECGAAP---NHAVILVGYGMKDIYNEDTGRMEKF 199
Query: 314 -YWQVKNSWSTYWGNQGYVLMSIKDN 338
Y+ +KNSW + WG GY+ + +N
Sbjct: 200 YYYIIKNSWGSDWGEGGYINLETDEN 225
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 107/205 (52%), Gaps = 21/205 (10%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F T VE ++ L LS+Q L+DC+ N+GC GG +YQ+I
Sbjct: 18 NQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCN--KKNHGCKGGAFVYAYQYI 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ + G+ T+ +Y PY C A + G+ V +E+ALK A+A P VA
Sbjct: 76 IDNGGIDTEANY-PYKAVQGPCRAAKK--VVRIDGYKGVPHCNENALKKAVASQ-PSVVA 131
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
IDAS K F Y +G++ + P G L+H V+ VGY K YW V+NSW YWG
Sbjct: 132 IDASSKQFQHYKSGIF------SGPCGTKLNHGVVIVGY----WKDYWIVRNSWGRYWGE 181
Query: 328 QGYVLMSIKDNN--CGVMTAPTYVT 350
QGY+ M CG+ P Y T
Sbjct: 182 QGYIRMKRVGGCGLCGIARLPYYPT 206
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGSCW+F T G +EG + + L LS+Q L+ C + GC GG ++ WI
Sbjct: 18 DQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD--TIDFGCGGGLMDNAFNWI 75
Query: 211 MKHG---LPTQDDYGPYL---GQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHG 264
+ + T+ Y PY+ G+ C + A +T V++ P EDA+ LA++G
Sbjct: 76 VNSNGGNVFTEASY-PYVSGNGEQPQCQMNGHEIGAAITDHVDL-PQDEDAIAAYLAENG 133
Query: 265 PVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTY 324
P+++A+DA+ SF Y G+ C + + LDH VL VGY + PYW +KNSWS
Sbjct: 134 PLAIAVDAT--SFMDYNGGIL--TSC--TSEQLDHGVLLVGYNDASNPPYWIIKNSWSNM 187
Query: 325 WGNQGYVLMSIKDNNC 340
WG GY+ + N C
Sbjct: 188 WGEDGYIRIEKGTNQC 203
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 103/195 (52%), Gaps = 7/195 (3%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ +CGSCW+F TG VEG +++ L LS+Q L+DC + C GG +Y I
Sbjct: 18 DQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD--KMDKACMGGLPSNAYSAI 75
Query: 211 MK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
GL T+DDY Y G C + A + V ++ N E L LAK GP+SVA
Sbjct: 76 KNLGGLETEDDY-SYQGHMQSCQFSAEKAKVYIQDSVELSQN-EQKLAAWLAKRGPISVA 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
I+A FY +G+ + SP +DHAVL VGYG+ P+W +KNSW T WG +G
Sbjct: 134 INAF--GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKG 191
Query: 330 YVLMSIKDNNCGVMT 344
Y + CGV T
Sbjct: 192 YYYLHRGSGACGVNT 206
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ +Q+ CGSCW+F T +EG + +L LS+Q L+DC ++GCDGG S Q
Sbjct: 16 VKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCE--RRSHGCDGGYQTTSLQ 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATAT-MTGFVNVTPNSEDALKLALAKHGPVS 267
+++ +G+ T+ +Y PY + C + +TG+ V N E +L A+A PVS
Sbjct: 74 YVVDNGVHTEREY-PYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
V D+ + F FY G+Y N+ DHAV AVGY GK Y +KNSW WG
Sbjct: 132 VVTDSRGRGFQFYKGGIYEGPCGTNT----DHAVTAVGY----GKTYLLLKNSWGPNWGE 183
Query: 328 QGYVLMSIKDNN----CGVMTA 345
+GY+ + CGV T+
Sbjct: 184 KGYIRIKRASGRSKGTCGVYTS 205
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 106/208 (50%), Gaps = 17/208 (8%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
Q CGS W+F TGA+E A+ + L LS+Q LIDC + GC G ++S++W++
Sbjct: 20 QGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCV--DESEGCYNGWHYQSFEWVV 77
Query: 212 KHG-LPTQDDYGPYLGQDAYCHIANTTATATMTGF-VNVTPNSEDALKL-----ALAKHG 264
KHG + ++ DY PY +D C T+ + V + N + +
Sbjct: 78 KHGGIASEADY-PYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ 136
Query: 265 PVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTY 324
P+SV+IDA K F FY G+Y C+ SP G++H VL VGYG DG YW KNSW
Sbjct: 137 PISVSIDA--KDFHFYSGGIYDGGNCS-SPYGINHFVLIVGYGSEDGVDYWIAKNSWGED 193
Query: 325 WGNQGYVLMSIKDNN----CGVMTAPTY 348
WG GY+ + N CG+ +Y
Sbjct: 194 WGIDGYIRIQRNTGNLLGVCGMNYFASY 221
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 101/203 (49%), Gaps = 13/203 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGS W+F T VEG + L LS+Q L+DC + GC GG S Q++
Sbjct: 18 NQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCD--KHSYGCKGGYQTTSLQYV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTA-TATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+G+ T Y PY + C + +TG+ V N E + ALA P+SV
Sbjct: 76 ANNGVHTSKVY-PYQAKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVL 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A K F Y +GV+ D C LDHAV AVGYG DGK Y +KNSW WG +G
Sbjct: 134 VEAGGKPFQLYKSGVF-DGPCGTK---LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKG 189
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + + N CGV + Y
Sbjct: 190 YMRLKRQSGNSQGTCGVYKSSYY 212
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 11/203 (5%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKK--LAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+Q CGS W+F +TGA+E + + + +S+Q L+DC GC GG ++
Sbjct: 133 NQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCV--PNALGCSGGWMNDAFT 190
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
++ ++G + PY D CH A ++G+V ++ E+ L +A GPV+V
Sbjct: 191 YVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAV 250
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
A DA F Y GVYY+ C + HAVL VGYG +G+ YW VKNSW WG
Sbjct: 251 AFDADDP-FGSYSGGVYYNPTCETNK--FTHAVLIVGYGNENGQDYWLVKNSWGDGWGLD 307
Query: 329 GYVLMSIKDNN----CGVMTAPT 347
GY ++ NN GV + PT
Sbjct: 308 GYFKIARNANNHCGIAGVASVPT 330
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 105/205 (51%), Gaps = 21/205 (10%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F T VE ++ L LS+Q L+DC N+GC GG +YQ+I
Sbjct: 18 NQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD--KKNHGCLGGAFVFAYQYI 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ + G+ TQ +Y PY C A + ++ G+ V +E ALK A+A P +VA
Sbjct: 76 INNGGIDTQANY-PYKAVQGPCQAA--SKVVSIDGYNGVPFCNEXALKQAVAVQ-PSTVA 131
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
IDAS F Y +G++ + P G L+H V VGY YW V+NSW YWG
Sbjct: 132 IDASSAQFQQYSSGIF------SGPCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGE 181
Query: 328 QGYVLMSIKDNN--CGVMTAPTYVT 350
+GY+ M CG+ P Y T
Sbjct: 182 KGYIRMLRVGGCGLCGIARLPYYPT 206
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F +EG ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 18 NQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A T G V P +E AL ++A PVSV
Sbjct: 76 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A+ K F Y G++ C N +DHAV AVGY G Y +KNSW T WG G
Sbjct: 134 LEAAGKDFQLYRGGIFVG-PCGNK---VDHAVAAVGY----GPNYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 115/211 (54%), Gaps = 25/211 (11%)
Query: 145 GYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDF 204
G + DQ CGSCW+F + G+VE Y ++ KL LS+Q L+DCS + N GC+GG
Sbjct: 29 GVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCS--FKNYGCNGGLIN 86
Query: 205 RSYQWIMKHGLPTQDDYGPYLGQDA--YCHIANTTATATMTGFVNVTPNSEDALKLALAK 262
+++ +++ G D PY+ DA C+I T + +++V N LK AL
Sbjct: 87 NAFEDMIELGGICPDGDYPYV-SDAPNLCNIDRCTEKYGIKNYLSVPDNK---LKEALRF 142
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGK 312
GP+S+++ A F+FY G+ +D +C D L+HAV+ VG+G + +
Sbjct: 143 LGPISISV-AVSDDFAFYKEGI-FDGECG---DQLNHAVMLVGFGMKEIVNPLTKKGEKH 197
Query: 313 PYWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 343
Y+ +KNSW WG +G++ +I+ + G+M
Sbjct: 198 YYYIIKNSWGQQWGERGFI--NIETDESGLM 226
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F +EG ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 18 NQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A T G V P ++ AL ++A PVSV
Sbjct: 76 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+ A+ K F Y G++ C N +DHAV AVGYG Y +KNSW T WG G
Sbjct: 134 LQAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F +EG ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 18 NQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A T G V P ++ AL ++A PVSV
Sbjct: 76 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+ A+ K F Y G++ C N +DHAV AVGYG Y +KNSW T WG G
Sbjct: 134 LQAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ Q CGSCW+F VEG ++ KL LS+Q L+DC ++GC GG + +
Sbjct: 16 VRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALE 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVS 267
++ K+G+ + Y PY + C T G V PN+E L A+AK PVS
Sbjct: 74 YVAKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
V +++ + F Y G++ + C +DHAV AVGYG+ GK Y +KNSW T WG
Sbjct: 132 VVVESKGRPFQLYKGGIF-EGPCGTK---VDHAVTAVGYGKSGGKGYILIKNSWGTAWGE 187
Query: 328 QGYVLMSIKDNN----CGVMTAPTYVT 350
+GY+ + N CG+ + Y T
Sbjct: 188 KGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 25/211 (11%)
Query: 145 GYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDF 204
G + DQ CGS W+F + G+VE Y ++ KL LS+Q L+DCS + N GC+GG
Sbjct: 28 GVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCS--FKNYGCNGGLIN 85
Query: 205 RSYQWIMKHGLPTQDDYGPYLGQDA--YCHIANTTATATMTGFVNVTPNSEDALKLALAK 262
+++ +++ G D PY+ DA C+I T + +++V N LK AL
Sbjct: 86 NAFEDMIELGGICPDGDYPYV-SDAPNLCNIDRCTEKYGIKNYLSVPDNK---LKEALRF 141
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGK 312
GP+S+++ A F+FY G+ +D +C D L+HAV+ VG+G + +
Sbjct: 142 LGPISISV-AVSDDFAFYKEGI-FDGECG---DQLNHAVMLVGFGMKEIVNPLTKKGEKH 196
Query: 313 PYWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 343
Y+ +KNSW WG +G++ +I+ + G+M
Sbjct: 197 YYYIIKNSWGQQWGERGFI--NIETDESGLM 225
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ Q CGSCW+F VEG ++ KL LS+Q L+DC ++GC GG + +
Sbjct: 16 VRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALE 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVS 267
++ K+G+ + Y PY + C T G V PN+E L A+AK PVS
Sbjct: 74 YVAKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
V +++ + F Y G++ + C ++HAV AVGYG+ GK Y +KNSW T WG
Sbjct: 132 VVVESKGRPFQLYKGGIF-EGPCGTK---VEHAVTAVGYGKSGGKGYILIKNSWGTAWGE 187
Query: 328 QGYVLMSIKDNN----CGVMTAPTYVT 350
+GY+ + N CG+ + Y T
Sbjct: 188 KGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGS W+F +EG ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 18 NQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A T G V P +E AL ++A PVSV
Sbjct: 76 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A+ K F Y G++ C N +DHAV AVGYG Y +KNSW T WG G
Sbjct: 134 LEAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGS W+F +EG ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 18 NQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A T G V P +E AL ++A PVSV
Sbjct: 76 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A+ K F Y G++ C N +DHAV AVGY G Y +KNSW T WG G
Sbjct: 134 LEAAGKDFQLYRGGIFVG-PCGNK---VDHAVAAVGY----GPNYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGS W+F +E ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 169 NQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCD--RRSYGCNGGYPWSALQLV 226
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A T G V P +E AL ++A PVSV
Sbjct: 227 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVV 284
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A+ K F Y G++ C N +DHAV AVGY G Y ++NSW T WG G
Sbjct: 285 LEAAGKDFQLYRGGIFVG-PCGNK---VDHAVAAVGY----GPNYILIRNSWGTGWGENG 336
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 337 YIRIKRGTGNSYGVCGLYTSSFY 359
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 100/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGS W+F +EG ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 18 NQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A T G V P ++ AL ++A PVSV
Sbjct: 76 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQ-PVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+ A+ K F Y G++ C N +DHAV AVGYG Y +KNSW T WG G
Sbjct: 134 LQAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGP----NYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 103/204 (50%), Gaps = 13/204 (6%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
Q CGSCW+F VEG ++ KL LS+Q L+DC ++GC GG + +++
Sbjct: 125 QGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALEYVA 182
Query: 212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVAI 270
K+G+ + Y PY + C T G V PN+E L A+AK PVSV +
Sbjct: 183 KNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQ-PVSVVV 240
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
++ + F Y G++ + C DG AV AVGYG+ GK Y +KNSW T WG +GY
Sbjct: 241 ESKGRPFQLYKGGIF-EGPCGTKVDG---AVTAVGYGKSGGKGYILIKNSWGTAWGEKGY 296
Query: 331 VLMSIKDNN----CGVMTAPTYVT 350
+ + N CG+ + Y T
Sbjct: 297 IRIKRAPGNSPGVCGLYKSSYYPT 320
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
Q C SCW+F T VEG +K L LS+Q L+DC + GC+ G S Q++
Sbjct: 19 QGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCD--LQSYGCNRGYQSTSLQYVA 76
Query: 212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMT-GFVNVTPNSEDALKLALAKHGPVSVAI 270
++G+ + Y PY+ + C T G V N+E +L A+A H PVSV +
Sbjct: 77 QNGIHLRAKY-PYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIA-HQPVSVVV 134
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
+++ + F Y G++ + C +DHAV AVGYG+ GK Y +KNSW WG GY
Sbjct: 135 ESAGRDFQNYKGGIF-EGSCGTK---VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGY 190
Query: 331 VLMSIKDNN----CGVMTAPTY 348
+ + N CGV + Y
Sbjct: 191 IRIRRASGNSPGVCGVYRSSYY 212
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 17/207 (8%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ +Q CGSCW+F + AVEG + +L LS+Q L+DC + GC GG + Q
Sbjct: 16 VRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCE--RRSYGCRGGFPLYALQ 73
Query: 209 WIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP-NSEDALKLALAKHGPVS 267
++ G+ + Y PY G C + T V P N+E AL +A PVS
Sbjct: 74 YVANSGIHLRQYY-PYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQ-PVS 131
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
+ ++A ++F Y G++ C S +DHAV AVGYG Y +KNSW T WG
Sbjct: 132 IVVEAKGRAFQNYRGGIFAGP-CGTS---IDHAVAAVGYGN----DYILIKNSWGTGWGE 183
Query: 328 QGYVLMSIKDNN----CGVMTAPTYVT 350
GY+ + N CGV++ + T
Sbjct: 184 GGYIRIKRGSGNPQGACGVLSDSVFPT 210
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 9/202 (4%)
Query: 152 QSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWIM 211
Q CGSCW+F A E AY LS+Q L+DC+ +GC G R ++I
Sbjct: 29 QGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCA---SQHGCHGDTIPRGIEYIQ 85
Query: 212 KHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAK-HGPVSVAI 270
++G+ + Y PY+ ++ C N+ ++ + + P ++ AL + H ++V I
Sbjct: 86 QNGVVEERSY-PYVAREQRCRRPNSQHYG-ISNYCQIYPPDVKQIREALTQTHTAIAVII 143
Query: 271 DASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++F Y P+ HAV VGYG G YW V+NSW T WG+ G
Sbjct: 144 GIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGDDYWIVRNSWDTTWGDSG 201
Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
Y +N + P V M
Sbjct: 202 YGYFQAGNNLMMIEQYPYVVIM 223
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
+M+ + Q CGSCW+F A E AY ++ L++Q L+DC+ +GC G
Sbjct: 18 QMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCA---SQHGCHGD 74
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
R ++I +G+ Q+ Y Y+ ++ C N ++ + + P + + ++ ALA
Sbjct: 75 TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNANKIREALA 132
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
+ H ++V I +F Y P+ HAV VGY G YW V+N
Sbjct: 133 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 190
Query: 320 SWSTYWGNQGY 330
SW T WG+ GY
Sbjct: 191 SWDTNWGDNGY 201
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 16/204 (7%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYM--KHKKLAVLSQQALIDCSWGYGNNGCDGGEDFR-SY 207
+Q CGSC+SF + G +E + + + +LS Q ++ CS Y GCDGG + +
Sbjct: 226 NQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCS-PYAQ-GCDGGFPYLIAG 283
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTT----ATATMTGFVNVTPNSEDALKLALAKH 263
++ G+ +++ PY DA C ++ +E +KL L KH
Sbjct: 284 KYAQDFGV-VEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKH 342
Query: 264 GPVSVAIDASQKSFSFYVNGVYYDEKCN---NSPDGLDHAVLAVGYGE--LDGKPYWQVK 318
GP++VA + F Y +G+Y+ + N + +HAVL VGYG+ + G YW VK
Sbjct: 343 GPMAVAFEV-HDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVK 401
Query: 319 NSWSTYWGNQGYVLMSIKDNNCGV 342
NSW + WG GY + + C +
Sbjct: 402 NSWGSQWGESGYFRIRRGTDECAI 425
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
+M+ + Q CGSCW+F A E AY + L++Q L+DC+ +GC G
Sbjct: 18 QMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA---SQHGCHGD 74
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
R ++I +G+ Q+ Y Y+ ++ C N ++ + + P + + ++ ALA
Sbjct: 75 TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNVNKIREALA 132
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
+ H ++V I +F Y P+ HAV VGY G YW V+N
Sbjct: 133 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 190
Query: 320 SWSTYWGNQGY 330
SW T WG+ GY
Sbjct: 191 SWDTNWGDNGY 201
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
+M+ + Q CGS W+F A E AY + L++Q L+DC+ +GC G
Sbjct: 98 QMRTVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA---SQHGCHGD 154
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
R ++I +G+ Q+ Y Y+ ++ C N ++ + + P + + ++ ALA
Sbjct: 155 TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNANKIREALA 212
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
+ H ++V I +F Y P+ HAV VGY G YW V+N
Sbjct: 213 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 270
Query: 320 SWSTYWGNQGY 330
SW T WG+ GY
Sbjct: 271 SWDTNWGDNGY 281
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 142 EMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGG 201
+M+ + Q CGS W+F A E AY ++ L++Q L+DC+ +GC G
Sbjct: 18 QMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCA---SQHGCHGD 74
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALA 261
R ++I +G+ Q+ Y Y+ ++ C N ++ + + P + + ++ ALA
Sbjct: 75 TIPRGIEYIQHNGV-VQESYYRYVAREQSCRRPNAQRFG-ISNYCQIYPPNANKIREALA 132
Query: 262 K-HGPVSVAIDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKN 319
+ H ++V I +F Y P+ HAV VGY G YW V+N
Sbjct: 133 QTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRN 190
Query: 320 SWSTYWGNQGY 330
SW T WG+ GY
Sbjct: 191 SWDTNWGDNGY 201
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 20/208 (9%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYM--KHKKLAVLSQQALIDCSWGYGNNGCDGGEDFR- 205
+ +Q+ CGSC+SF + G +E + + + +LS Q ++ CS Y GC+GG +
Sbjct: 225 VRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCS-QYAQ-GCEGGFPYLI 282
Query: 206 SYQWIMKHGLPTQDDYGPYLGQDAYCHIAN------TTATATMTGFVNVTPNSEDALKLA 259
+ ++ GL + + PY G D+ C + ++ + GF +E +KL
Sbjct: 283 AGKYAQDFGLVEEACF-PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGC--NEALMKLE 339
Query: 260 LAKHGPVSVAIDASQKSFSFYVNGVYYDEKCN---NSPDGLDHAVLAVGYG--ELDGKPY 314
L HGP++VA + F Y G+Y+ N + +HAVL VGYG G Y
Sbjct: 340 LVHHGPMAVAFEVYD-DFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDY 398
Query: 315 WQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
W VKNSW T WG GY + + C +
Sbjct: 399 WIVKNSWGTGWGENGYFRIRRGTDECAI 426
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 155 CGSCWSFGTTGAVEGAYYMKHKKL---AVLSQQALIDCSWGYGNNG-CDGGEDFRSYQWI 210
CGSCW+ +T A+ +K K +LS Q +IDC GN G C+GG D + +
Sbjct: 28 CGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDC----GNAGSCEGGNDLSVWDYA 83
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPN-------------SEDALK 257
+HG+P + Y +D C N T + N + +
Sbjct: 84 HQHGIP-DETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMM 142
Query: 258 LALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQV 317
+ +GP+S I A+++ + Y G+Y + + ++H V G+G DG YW V
Sbjct: 143 AEIYANGPISCGIMATER-LANYTGGIYAEYQ---DTTYINHVVSVAGWGISDGTEYWIV 198
Query: 318 KNSWSTYWGNQGYVLM 333
+NSW WG +G++ +
Sbjct: 199 RNSWGEPWGERGWLRI 214
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 155 CGSCWSFGTTGAVEGAYYMKHKKL---AVLSQQALIDCSWGYGNNG-CDGGEDFRSYQWI 210
CGSCW+ +T A+ +K K +LS Q +IDC GN G C+GG D + +
Sbjct: 63 CGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDC----GNAGSCEGGNDLSVWDYA 118
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPN-------------SEDALK 257
+HG+P + Y +D C N T + N + +
Sbjct: 119 HQHGIP-DETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMM 177
Query: 258 LALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQV 317
+ +GP+S I A+++ + Y G+Y + + ++H V G+G DG YW V
Sbjct: 178 AEIYANGPISCGIMATER-LANYTGGIYAEYQ---DTTYINHVVSVAGWGISDGTEYWIV 233
Query: 318 KNSWSTYWGNQGYVLM 333
+NSW WG +G++ +
Sbjct: 234 RNSWGEPWGERGWLRI 249
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYY-MKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
+ DQS CGSCW+ A+ + M + +S L+ C G+ GC+GG+ R++
Sbjct: 113 IADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAW 171
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----------------- 250
+ GL D PY H + + F TP
Sbjct: 172 AYFSSTGL-VSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYR 230
Query: 251 -------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLD-HAVL 302
ED L GP VA D + F Y +GVY+ + S L HAV
Sbjct: 231 SWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYH----HVSGQYLGGHAVR 285
Query: 303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
VG+G +G PYW++ NSW+T WG GY L+ + CG+
Sbjct: 286 LVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 325
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAY-YMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
+ DQS CGSCW+ A+ + M + +S L+ C G+ GC+GG+ R++
Sbjct: 90 IADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAW 148
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----------------- 250
+ GL D PY H + + F TP
Sbjct: 149 AYFSSTGL-VSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYR 207
Query: 251 -------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLD-HAVL 302
ED L GP VA D + F Y +GVY+ + S L HAV
Sbjct: 208 SWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYH----HVSGQYLGGHAVR 262
Query: 303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
VG+G +G PYW++ NSW+T WG GY L+ + CG+
Sbjct: 263 LVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 302
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 33/220 (15%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAY-YMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
+ DQS CGSCW+ A+ + M + +S L+ C G+ GC+GG+ R++
Sbjct: 91 IADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAW 149
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----------------- 250
+ GL D PY H + + F TP
Sbjct: 150 AYFSSTGL-VSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYR 208
Query: 251 -------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLD-HAVL 302
ED L GP VA D + F Y +GVY+ + S L HAV
Sbjct: 209 SWTSYALQGEDDYMRELFFRGPFEVAFDVYED-FIAYNSGVYH----HVSGQYLGGHAVR 263
Query: 303 AVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
VG+G +G PYW++ NSW+T WG GY L+ + CG+
Sbjct: 264 LVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 100/245 (40%), Gaps = 39/245 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
AS DA + + DQ CGSCW+FG A+ + H V +S + L+
Sbjct: 66 ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 124
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
C +GC+GG ++ + + GL + Y ++G Y H+ + T
Sbjct: 125 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 184
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
G +P NSE + + K+GPV A F
Sbjct: 185 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 243
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
Y +GVY + G HA+ +G+G +G PYW V NSW+T WG+ G+ +
Sbjct: 244 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 300
Query: 338 NNCGV 342
++CG+
Sbjct: 301 DHCGI 305
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 39/247 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
AS DA + + DQ CGSCW+FG A+ + H V +S + L+
Sbjct: 4 ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 62
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
C +GC+GG ++ + + GL + Y ++G Y H+ + T
Sbjct: 63 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 122
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
G +P NSE + + K+GPV A F
Sbjct: 123 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 181
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
Y +GVY + G HA+ +G+G +G PYW V NSW+T WG+ G+ +
Sbjct: 182 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 238
Query: 338 NNCGVMT 344
++CG+ +
Sbjct: 239 DHCGIES 245
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 39/247 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
AS DA + + DQ CGSCW+FG A+ + H V +S + L+
Sbjct: 5 ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 63
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
C +GC+GG ++ + + GL + Y ++G Y H+ + T
Sbjct: 64 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 123
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
G +P NSE + + K+GPV A F
Sbjct: 124 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 182
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
Y +GVY + G HA+ +G+G +G PYW V NSW+T WG+ G+ +
Sbjct: 183 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 239
Query: 338 NNCGVMT 344
++CG+ +
Sbjct: 240 DHCGIES 246
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 39/247 (15%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
AS DA + + DQ CGSCW+FG A+ + H V +S + L+
Sbjct: 3 ASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 61
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIANTTATATM 242
C +GC+GG ++ + + GL + Y ++G Y H+ + T
Sbjct: 62 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTG 121
Query: 243 TGFV---------NVTP----------------NSEDALKLALAKHGPVSVAIDASQKSF 277
G +P NSE + + K+GPV A F
Sbjct: 122 EGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSDF 180
Query: 278 SFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 337
Y +GVY + G HA+ +G+G +G PYW V NSW+T WG+ G+ +
Sbjct: 181 LLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 338 NNCGVMT 344
++CG+ +
Sbjct: 238 DHCGIES 244
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 41/248 (16%)
Query: 132 ASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAV---LSQQALID 188
AS DA + + DQ CGS W+FG A+ + H V +S + L+
Sbjct: 9 ASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLT 67
Query: 189 CSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTG 244
C +GC+GG ++ + + GL + Y ++G Y C A TG
Sbjct: 68 CCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTG 127
Query: 245 FVNVTP----------------------------NSEDALKLALAKHGPVSVAIDASQKS 276
+ TP NSE + + K+GPV A
Sbjct: 128 EGD-TPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSV-YSD 185
Query: 277 FSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIK 336
F Y +GVY + G HA+ +G+G +G PYW V NSW+T WG+ G+ +
Sbjct: 186 FLLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG 242
Query: 337 DNNCGVMT 344
++CG+ +
Sbjct: 243 QDHCGIES 250
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 41/231 (17%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
+ DQ CGSCW+FG A+ + + +S + L+ C +GC+GG +
Sbjct: 20 IRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGA 79
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------------ 250
+ + + GL + Y ++G Y C A TG + TP
Sbjct: 80 WNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGD-TPKCNKMCEAGYST 138
Query: 251 ----------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSP 294
+SE + + K+GPV A F Y +GVY E +
Sbjct: 139 SYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD-FLTYKSGVYKHE----AG 193
Query: 295 DGLD-HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
D + HA+ +G+G +G PYW V NSW+ WG+ G+ + +N+CG+ +
Sbjct: 194 DVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 97/231 (41%), Gaps = 41/231 (17%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
+ DQ CGSCW+FG A+ + + +S + L+ C +GC+GG +
Sbjct: 26 IRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGA 85
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------------ 250
+ + + GL + Y ++G Y C A TG + TP
Sbjct: 86 WNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGD-TPKCNKMCEAGYST 144
Query: 251 ----------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSP 294
+SE + + K+GPV A F Y +GVY E +
Sbjct: 145 SYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSD-FLTYKSGVYKHE----AG 199
Query: 295 DGLD-HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
D + HA+ +G+G +G PYW V NSW+ WG+ G+ + +N+CG+ +
Sbjct: 200 DVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
+ DQ CGS W+FG A+ + + +S + L+ C +GC+GG +
Sbjct: 82 IRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGA 141
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------------ 250
+ + + GL + Y ++G Y C A TG + TP
Sbjct: 142 WNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGD-TPKCNKMCEAGYST 200
Query: 251 ----------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSP 294
+SE + + K+GPV A F Y +GVY E +
Sbjct: 201 SYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS-DFLTYKSGVYKHE----AG 255
Query: 295 DGLD-HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
D + HA+ +G+G +G PYW V NSW+ WG+ G+ + +N+CG+ +
Sbjct: 256 DVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 39/238 (16%)
Query: 144 KGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKH--KKLAVLSQQALIDCSWGYGNNGCDGG 201
K ++ DQS CGSCW+FG A+ ++ K+ LS L+ C G GC+GG
Sbjct: 17 KSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGL-GCEGG 75
Query: 202 EDFRSYQWIMKHGLPTQDDYGPYLGQDAY----CHIANTTATATMTGFVNVTP------- 250
++ + +K G+ T + G + Y C + TP
Sbjct: 76 ILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQ 135
Query: 251 ---------------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEK 289
N E A++ + K+GPV + F Y +G+Y K
Sbjct: 136 KKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE-DFLNYKSGIY---K 191
Query: 290 CNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPT 347
HA+ +G+G + PYW + NSW+ WG GY + + C + + T
Sbjct: 192 HITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVT 249
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 37/229 (16%)
Query: 149 LLDQSVCGSCWSFGTTGAVEG--AYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRS 206
+ DQ CGSCW+FG A+ + + +S + ++ C G +GC+GGE +
Sbjct: 20 IRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGEPSGA 79
Query: 207 YQWIMKHGLPTQDDYGPYLGQDAY---------------CHIANTTATATMTGFVNVTP- 250
+ + K GL + Y ++G Y C T + T +P
Sbjct: 80 WNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPS 139
Query: 251 ---------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPD 295
N+E + + K+GPV A F Y +GVY + +
Sbjct: 140 YKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY--QHVSGEIM 196
Query: 296 GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
G HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 197 G-GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 181 LSQQALIDCSWGYGNNGCDGGEDFRSYQWIMKHGLPTQDDYGPYLGQDAYC------HIA 234
+S + L+ C +GC+GG ++ + + GL + Y ++G Y H+
Sbjct: 5 VSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVN 64
Query: 235 NTTATATMTGFV---------NVTP----------------NSEDALKLALAKHGPVSVA 269
+ T G +P NSE + + K+GPV A
Sbjct: 65 GSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGA 124
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
F Y +GVY + G HA+ +G+G +G PYW V NSW+T WG+ G
Sbjct: 125 FSV-YSDFLLYKSGVY--QHVTGEMMG-GHAIRILGWGVENGTPYWLVANSWNTDWGDNG 180
Query: 330 YVLMSIKDNNCGVMT 344
+ + ++CG+ +
Sbjct: 181 FFKILRGQDHCGIES 195
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 87/229 (37%), Gaps = 37/229 (16%)
Query: 149 LLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+ DQ CGSCW+FG A+ + + A + G G F S
Sbjct: 20 IRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGA 79
Query: 209 WIM--KHGLPTQDDYGPYLGQDAY---------------CHIANTTATATMTGFVNVTP- 250
W K GL + Y ++G Y C T + T +P
Sbjct: 80 WNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPS 139
Query: 251 ---------------NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPD 295
N+E + + K+GPV A F Y +GVY + +
Sbjct: 140 YKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY--QHVSGEIM 196
Query: 296 GLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
G HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 197 G-GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 251 NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELD 310
N+E + + K+GPV A F Y +GVY + + G HA+ +G+G +
Sbjct: 107 NNEKEIMAEIYKNGPVEGAFSV-YSDFLLYKSGVY--QHVSGEIMG-GHAIRILGWGVEN 162
Query: 311 GKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 344
G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYM--KHKKLAVLSQQALIDCSWGYGNNGCDGGEDFR-SY 207
+Q+ CGSC+SF + G +E + + + +LS Q ++ CS GC+GG + +
Sbjct: 21 NQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQ--YAQGCEGGFPYLIAG 78
Query: 208 QWIMKHGLPTQDDYGPYLGQDAYCHIAN------TTATATMTGFVNVTPNSEDALKLALA 261
++ GL + + PY G D+ C + ++ + GF +E +KL L
Sbjct: 79 KYAQDFGLVEEACF-PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGC--NEALMKLELV 135
Query: 262 KHGPVSVAIDASQKSFSFYVNGVYY 286
HGP++VA + F Y G+Y+
Sbjct: 136 HHGPMAVAFEV-YDDFLHYKKGIYH 159
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 84/219 (38%), Gaps = 38/219 (17%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY-QW 209
DQ C + W F + +E MK + +S + +C G + CD G + Q
Sbjct: 26 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 85
Query: 210 IMKHG-LPTQDDYG-PYLGQDAYC-----HIANTTATATMTGFVNVTPNSEDA------- 255
I +G LP + +Y Y+ C H N + N PNS D
Sbjct: 86 IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKN-EPNSLDGKGYTAYE 144
Query: 256 --------------LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
+K + G V I A + + +G C + D DHAV
Sbjct: 145 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKA-ENVMGYEFSGKKVQNLCGD--DTADHAV 201
Query: 302 LAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 335
VGYG E + K YW V+NSW YWG++GY + +
Sbjct: 202 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 240
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 84/219 (38%), Gaps = 38/219 (17%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSY-QW 209
DQ C + W F + +E MK + +S + +C G + CD G + Q
Sbjct: 27 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86
Query: 210 IMKHG-LPTQDDYG-PYLGQDAYC-----HIANTTATATMTGFVNVTPNSEDA------- 255
I +G LP + +Y Y+ C H N + N PNS D
Sbjct: 87 IEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKN-EPNSLDGKGYTAYE 145
Query: 256 --------------LKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
+K + G V I A + + +G C + D DHAV
Sbjct: 146 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKA-ENVMGYEFSGKKVKNLCGD--DTADHAV 202
Query: 302 LAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 335
VGYG E + K YW V+NSW YWG++GY + +
Sbjct: 203 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 241
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 298 DHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
+HAVL VGYG G YW VKNSW T WG GY + + C +
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 56
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 314 YWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 351
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 151 DQSVCGSCWSFGTTGAV 167
DQ CGSCW+FG A+
Sbjct: 22 DQGSCGSCWAFGAVEAI 38
>pdb|3MV3|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 325
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 65 PDVSD--FKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSK 122
PD++ F+ IYR+ L E+EK+ + E + G+ +E R EG V
Sbjct: 130 PDIAIECFREAIYRITLLXVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRX 189
Query: 123 YSLWVRYNKA 132
L + KA
Sbjct: 190 LELAAYFTKA 199
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 151 DQSVCGSCWSFGTTGAV 167
DQ CGSCW+FG A+
Sbjct: 22 DQGSCGSCWAFGAVEAI 38
>pdb|3MV2|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 325
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 65 PDVSD--FKVNIYRLFFLRPRFHENEKIRYNWTYIGEELVNGIILEKWRLVTSEGEKVSK 122
PD++ F+ IYR+ L E+EK+ + E + G+ +E R EG V
Sbjct: 130 PDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRM 189
Query: 123 YSLWVRYNKA 132
L + KA
Sbjct: 190 LELAAYFTKA 199
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 299 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM 333
HAVL VGY D +++++NSW G GY M
Sbjct: 237 HAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWM 269
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 222 GPYLGQDAYCHIANTTATATMTGFVNVTP 250
GP L +D+Y +I N + AT TG V P
Sbjct: 51 GPTLSKDSYLNIPNILSIATSTGCDGVHP 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,553,535
Number of Sequences: 62578
Number of extensions: 500375
Number of successful extensions: 1341
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 138
length of query: 351
length of database: 14,973,337
effective HSP length: 100
effective length of query: 251
effective length of database: 8,715,537
effective search space: 2187599787
effective search space used: 2187599787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)