RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3960
(351 letters)
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 316 bits (812), Expect = e-109
Identities = 82/199 (41%), Positives = 119/199 (59%), Gaps = 3/199 (1%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F TTGA+E A + K+ L++Q L+DC+ + N+GC GG +++++I
Sbjct: 19 NQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYI 78
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ G+ +D Y PY GQD +C A A + N+T N E+A+ A+A + PVS A
Sbjct: 79 RYNKGIMGEDTY-PYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFA 137
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+ + F Y G+Y C+ +PD ++HAVLAVGYGE +G PYW VKNSW WG G
Sbjct: 138 FEVTN-DFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNG 196
Query: 330 YVLMSIKDNNCGVMTAPTY 348
Y L+ N CG+ +Y
Sbjct: 197 YFLIERGKNMCGLAACASY 215
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 305 bits (784), Expect = e-103
Identities = 85/202 (42%), Positives = 122/202 (60%), Gaps = 5/202 (2%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGS WSF TTGAVEG ++ +L LS+Q LIDCS YGN GCDGG ++ +I
Sbjct: 132 DQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYI 191
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+G+ ++ Y PY Q YC ++ + T++G+ ++ E++L A+ + GPV+VAI
Sbjct: 192 HDYGIMSESAY-PYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAI 250
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
DA+ FY G++YD+ C + L+H VL VGYG +G+ YW +KNSW + WG GY
Sbjct: 251 DATD-ELQFYSGGLFYDQTC--NQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGY 307
Query: 331 VLMSI-KDNNCGVMTAPTYVTM 351
NNCG+ TA +Y +
Sbjct: 308 WRQVRNYGNNCGIATAASYPAL 329
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 299 bits (767), Expect = e-102
Identities = 94/203 (46%), Positives = 126/203 (62%), Gaps = 7/203 (3%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F + GA+EG K KL LS Q L+DC N+GC GG ++Q++
Sbjct: 18 NQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYV 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
K+ G+ ++D Y PY+GQ+ C T A G+ + +E ALK A+A+ GPVSVA
Sbjct: 76 QKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVA 134
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
IDAS SF FY GVYYDE C + D L+HAVLAVGYG G +W +KNSW WGN+G
Sbjct: 135 IDASLTSFQFYSKGVYYDESC--NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKG 192
Query: 330 YVLMSI-KDNNCGVMTAPTYVTM 351
Y+LM+ K+N CG+ ++ M
Sbjct: 193 YILMARNKNNACGIANLASFPKM 215
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 302 bits (775), Expect = e-102
Identities = 81/202 (40%), Positives = 109/202 (53%), Gaps = 5/202 (2%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGS W+F TTG +EG Y + S+Q L+DCS +GNNGC GG +YQ++
Sbjct: 109 DQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYL 168
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAI 270
+ GL T+ Y PY + C A +TGF V SE LK + GP +VA+
Sbjct: 169 KQFGLETESSY-PYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAV 227
Query: 271 DASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 330
D F Y +G+Y + C SP ++HAVLAVGYG G YW VKNSW WG +GY
Sbjct: 228 DVES-DFMMYRSGIYQSQTC--SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGY 284
Query: 331 VLMSI-KDNNCGVMTAPTYVTM 351
+ M + N CG+ + + +
Sbjct: 285 IRMVRNRGNMCGIASLASLPMV 306
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 297 bits (764), Expect = e-101
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 7/204 (3%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQW 209
Q CG+CW+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+
Sbjct: 19 YQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQY 78
Query: 210 IMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
I+ + G+ + Y PY D C + AT + + + ED LK A+A GPVSV
Sbjct: 79 IIDNKGIDSDASY-PYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSV 137
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
+DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +
Sbjct: 138 GVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEE 194
Query: 329 GYVLMSI-KDNNCGVMTAPTYVTM 351
GY+ M+ K N+CG+ + P+Y +
Sbjct: 195 GYIRMARNKGNHCGIASFPSYPEI 218
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 300 bits (771), Expect = e-101
Identities = 83/204 (40%), Positives = 118/204 (57%), Gaps = 7/204 (3%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSW-GYGNNGCDGGEDFRSYQW 209
Q CG+ W+F GA+E +K KL LS Q L+DCS YGN GC+GG ++Q+
Sbjct: 116 YQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQY 175
Query: 210 IMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
I+ + G+ + Y PY D C + AT + + + ED LK A+A GPVSV
Sbjct: 176 IIDNKGIDSDASY-PYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSV 234
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
+DA SF Y +GVYY+ C + ++H VL VGYG+L+GK YW VKNSW +G +
Sbjct: 235 GVDARHPSFFLYRSGVYYEPSCTQN---VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEE 291
Query: 329 GYVLMSI-KDNNCGVMTAPTYVTM 351
GY+ M+ K N+CG+ + P+Y +
Sbjct: 292 GYIRMARNKGNHCGIASFPSYPEI 315
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 298 bits (766), Expect = e-100
Identities = 94/203 (46%), Positives = 126/203 (62%), Gaps = 7/203 (3%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F + GA+EG K KL LS Q L+DC N+GC GG ++Q++
Sbjct: 117 NQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYV 174
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
K+ G+ ++D Y PY+GQ+ C T A G+ + +E ALK A+A+ GPVSVA
Sbjct: 175 QKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVA 233
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
IDAS SF FY GVYYDE C + D L+HAVLAVGYG G +W +KNSW WGN+G
Sbjct: 234 IDASLTSFQFYSKGVYYDESC--NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKG 291
Query: 330 YVLMSI-KDNNCGVMTAPTYVTM 351
Y+LM+ K+N CG+ ++ M
Sbjct: 292 YILMARNKNNACGIANLASFPKM 314
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 292 bits (750), Expect = 1e-99
Identities = 90/207 (43%), Positives = 125/207 (60%), Gaps = 10/207 (4%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F TGA+EG + K +L LS+Q L+DCS GN GC+GG ++Q++
Sbjct: 18 NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 77
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ GL +++ Y PY + C + A TGFV++ P E AL A+A GP+SVA
Sbjct: 78 QDNGGLDSEESY-PYEATEESCKYNPKYSVANDTGFVDI-PKQEKALMKAVATVGPISVA 135
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYW 325
IDA +SF FY G+Y++ C S + +DH VL VGYG E D YW VKNSW W
Sbjct: 136 IDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEW 193
Query: 326 GNQGYVLMSI-KDNNCGVMTAPTYVTM 351
G GYV M+ + N+CG+ +A +Y T+
Sbjct: 194 GMGGYVKMAKDRRNHCGIASAASYPTV 220
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 293 bits (753), Expect = 1e-98
Identities = 89/207 (42%), Positives = 124/207 (59%), Gaps = 10/207 (4%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F TGA+EG + K +L LS+Q L+DCS GN GC+GG ++Q++
Sbjct: 114 NQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 173
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ GL +++ Y PY + C + A GFV++ P E AL A+A GP+SVA
Sbjct: 174 QDNGGLDSEESY-PYEATEESCKYNPKYSVANDAGFVDI-PKQEKALMKAVATVGPISVA 231
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYW 325
IDA +SF FY G+Y++ C S + +DH VL VGYG E D YW VKNSW W
Sbjct: 232 IDAGHESFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEW 289
Query: 326 GNQGYVLMSI-KDNNCGVMTAPTYVTM 351
G GYV M+ + N+CG+ +A +Y T+
Sbjct: 290 GMGGYVKMAKDRRNHCGIASAASYPTV 316
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 292 bits (749), Expect = 7e-98
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 10/205 (4%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
+Q CGS W+F +TGA+E + + + +S+Q L+DC GC GG ++
Sbjct: 133 NQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCV--PNALGCSGGWMNDAFT 190
Query: 209 WIMKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVS 267
++ ++ G+ ++ Y PY D CH A ++G+V ++ E+ L +A GPV+
Sbjct: 191 YVAQNGGIDSEGAY-PYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVA 249
Query: 268 VAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGN 327
VA DA F Y GVYY+ C + HAVL VGYG +G+ YW VKNSW WG
Sbjct: 250 VAFDADD-PFGSYSGGVYYNPTC--ETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGL 306
Query: 328 QGYVLMS-IKDNNCGVMTAPTYVTM 351
GY ++ +N+CG+ + T+
Sbjct: 307 DGYFKIARNANNHCGIAGVASVPTL 331
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 287 bits (737), Expect = 3e-96
Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 9/203 (4%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
Q CGS W+F A E AY + L++Q L+DC+ +GC G R ++I
Sbjct: 107 MQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA---SQHGCHGDTIPRGIEYI 163
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAK-HGPVSVA 269
+G+ + Y Y+ ++ C N ++ + + P + + ++ ALA+ H ++V
Sbjct: 164 QHNGVVQESYY-RYVAREQSCRRPNAQR-FGISNYCQIYPPNANKIREALAQTHSAIAVI 221
Query: 270 IDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
I +F Y HAV VGY G YW V+NSW T WG+
Sbjct: 222 IGIKDLDAFRHYDGRTIIQRDN--GYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN 279
Query: 329 GYVLMSIKDNNCGVMTAPTYVTM 351
GY + + + P V +
Sbjct: 280 GYGYFAANIDLMMIEEYPYVVIL 302
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 280 bits (718), Expect = 1e-94
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 9/203 (4%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
Q CGS W+F A E AY ++ L++Q L+DC+ +GC G R ++I
Sbjct: 27 MQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVDCA---SQHGCHGDTIPRGIEYI 83
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAK-HGPVSVA 269
+G+ + Y Y+ ++ C N ++ + + P + + ++ ALA+ H ++V
Sbjct: 84 QHNGVVQESYY-RYVAREQSCRRPNAQR-FGISNYCQIYPPNANKIREALAQTHSAIAVI 141
Query: 270 IDASQ-KSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
I +F Y HAV VGY G YW V+NSW T WG+
Sbjct: 142 IGIKDLDAFRHYDGRTIIQRDN--GYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN 199
Query: 329 GYVLMSIKDNNCGVMTAPTYVTM 351
GY + + + P V +
Sbjct: 200 GYGYFAANIDLMMIEEYPYVVIL 222
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 278 bits (713), Expect = 7e-94
Identities = 88/207 (42%), Positives = 120/207 (57%), Gaps = 12/207 (5%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGSCW+F TTGA+EGA+ K KL LS+Q L+DCS GN C GGE ++Q++
Sbjct: 24 DQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYV 83
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ G+ ++D Y PYL +D C + + GF +V SE A+K ALA PVS+A
Sbjct: 84 LDSGGICSEDAY-PYLARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAALA-KSPVSIA 141
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGN 327
I+A Q F FY GV +D C LDH VL VGYG + K +W +KNSW T WG
Sbjct: 142 IEADQMPFQFYHEGV-FDASCGTD---LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGR 197
Query: 328 QGYVLMS---IKDNNCGVMTAPTYVTM 351
GY+ M+ ++ CG++ ++ M
Sbjct: 198 DGYMYMAMHKGEEGQCGLLLDASFPVM 224
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 270 bits (693), Expect = 6e-91
Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 11/206 (5%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGS W+F T AVEG + L LS+Q L+DC GCDGG +Q+I
Sbjct: 18 DQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFI 77
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHI-ANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
+ + G+ T+ +Y PY ++ C++ ++ + NV N+E AL+ A+A + PVSV
Sbjct: 78 INNGGINTEANY-PYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVA-YQPVSV 135
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQ 328
A++A+ +F Y +G++ C + +DHAV VGYG G YW VKNSW T WG +
Sbjct: 136 ALEAAGYNFQHYSSGIFTGP-CGTA---VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEE 191
Query: 329 GYVLMS---IKDNNCGVMTAPTYVTM 351
GY+ + CG+ +Y
Sbjct: 192 GYMRIQRNVGGVGQCGIAKKASYPVK 217
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 269 bits (690), Expect = 2e-90
Identities = 77/202 (38%), Positives = 104/202 (51%), Gaps = 7/202 (3%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ +CGSCW+F TG VEG +++ L LS+Q L+DC + C GG +Y I
Sbjct: 18 DQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD--KMDKACMGGLPSNAYSAI 75
Query: 211 MK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
GL T+DDY Y G C + A + V + +E L LAK GP+SVA
Sbjct: 76 KNLGGLETEDDY-SYQGHMQSCQFSAEKAKVYIQDSVEL-SQNEQKLAAWLAKRGPISVA 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
I+A FY +G+ + SP +DHAVL VGYG+ P+W +KNSW T WG +G
Sbjct: 134 INAF--GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKG 191
Query: 330 YVLMSIKDNNCGVMTAPTYVTM 351
Y + CGV T + +
Sbjct: 192 YYYLHRGSGACGVNTMASSAVV 213
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 269 bits (691), Expect = 4e-89
Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 13/206 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
Q CGSCW+F VEG ++ KL LS+Q L+DC ++GC GG + +++
Sbjct: 124 HQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALEYV 181
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
K+G+ + Y PY + C +G V PN+E L A+A PVSV
Sbjct: 182 AKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVV 239
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+++ + F Y G++ C +D AV AVGYG+ GK Y +KNSW T WG +G
Sbjct: 240 VESKGRPFQLYKGGIFEGP-CGTK---VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKG 295
Query: 330 YVLMSIKDNN----CGVMTAPTYVTM 351
Y+ + N CG+ + Y T
Sbjct: 296 YIRIKRAPGNSPGVCGLYKSSYYPTK 321
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 260 bits (667), Expect = 5e-87
Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 13/203 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
Q CGSCW+F VEG ++ KL LS+Q L+DC ++GC GG + +++
Sbjct: 18 HQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCE--RRSHGCKGGYPPYALEYV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
K+G+ + Y PY + C +G V PN+E L A+A PVSV
Sbjct: 76 AKNGIHLRSKY-PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIA-KQPVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+++ + F Y G++ C +DHAV AVGYG+ GK Y +KNSW T WG +G
Sbjct: 134 VESKGRPFQLYKGGIFEGP-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKG 189
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ + Y
Sbjct: 190 YIRIKRAPGNSPGVCGLYKSSYY 212
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 258 bits (663), Expect = 2e-86
Identities = 76/206 (36%), Positives = 103/206 (50%), Gaps = 13/206 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F T VEG + L LS+Q L+DC + GC GG S Q++
Sbjct: 18 NQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD--KHSYGCKGGYQTTSLQYV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+G+ T Y PY + C + +TG+ V N E + ALA + P+SV
Sbjct: 76 ANNGVHTSKVY-PYQAKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALA-NQPLSVL 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A K F Y +GV+ D C LDHAV AVGYG DGK Y +KNSW WG +G
Sbjct: 134 VEAGGKPFQLYKSGVF-DGPCGTK---LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKG 189
Query: 330 YVLMSIKDNN----CGVMTAPTYVTM 351
Y+ + + N CGV + Y
Sbjct: 190 YMRLKRQSGNSQGTCGVYKSSYYPFK 215
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 258 bits (662), Expect = 2e-86
Identities = 74/205 (36%), Positives = 109/205 (53%), Gaps = 14/205 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F AVE ++ +L LS+Q L+DC ++GC+GG ++Q+I
Sbjct: 18 NQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD--TASHGCNGGWMNNAFQYI 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ + G+ TQ +Y PY C ++ GF VT N+E AL+ A+A PVSV
Sbjct: 76 ITNGGIDTQQNY-PYSAVQGSCK-PYRLRVVSINGFQRVTRNNESALQSAVA-SQPVSVT 132
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A+ F Y +G++ +H V+ VGYG GK YW V+NSW WGNQG
Sbjct: 133 VEAAGAPFQHYSSGIFTGPCGTA----QNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQG 188
Query: 330 YVLMSIKDNN----CGVMTAPTYVT 350
Y+ M + CG+ P+Y T
Sbjct: 189 YIWMERNVASSAGLCGIAQLPSYPT 213
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 257 bits (660), Expect = 5e-86
Identities = 73/203 (35%), Positives = 112/203 (55%), Gaps = 13/203 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F T AVEG + L LS+Q L+DC+ N+GC GG ++Q+I
Sbjct: 20 NQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT--TANHGCRGGWMNPAFQFI 77
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ + G+ +++ Y PY GQD C+ ++ + NV ++E +L+ A+A + PVSV
Sbjct: 78 VNNGGINSEETY-PYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVA-NQPVSVT 135
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
+DA+ + F Y +G++ CN S +HA+ VGYG + K +W VKNSW WG G
Sbjct: 136 MDAAGRDFQLYRSGIFTGS-CNIS---ANHALTVVGYGTENDKDFWIVKNSWGKNWGESG 191
Query: 330 YVLMS----IKDNNCGVMTAPTY 348
Y+ D CG+ +Y
Sbjct: 192 YIRAERNIENPDGKCGITRFASY 214
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 255 bits (655), Expect = 3e-85
Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 17/206 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q+ CGSCW+F T +EG + +L LS+Q L+DC ++GCDGG S Q++
Sbjct: 18 NQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCE--RRSHGCDGGYQTTSLQYV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ +G+ T+ +Y PY + C + +TG+ V N E +L A+A + PVSV
Sbjct: 76 VDNGVHTEREY-PYEKKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIA-NQPVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
D+ + F FY G+Y N DHAV AVGY GK Y +KNSW WG +G
Sbjct: 134 TDSRGRGFQFYKGGIYEGPCGTN----TDHAVTAVGY----GKTYLLLKNSWGPNWGEKG 185
Query: 330 YVLMS----IKDNNCGVMTAPTYVTM 351
Y+ + CGV T+ +
Sbjct: 186 YIRIKRASGRSKGTCGVYTSSFFPIK 211
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 255 bits (654), Expect = 7e-85
Identities = 86/208 (41%), Positives = 113/208 (54%), Gaps = 14/208 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGSCW+F T AVEG +K KL LS+Q L+DC N GC+GG ++++I
Sbjct: 19 DQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ-NQGCNGGLMDYAFEFI 77
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATA-TMTGFVNVTPNSEDALKLALAKHGPVSV 268
+ G+ T+ +Y PY D C ++ A A ++ G NV N E+AL A+A + PVSV
Sbjct: 78 KQRGGITTEANY-PYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVA-NQPVSV 135
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGN 327
AIDA F FY GV+ C LDH V VGYG +DG YW VKNSW WG
Sbjct: 136 AIDAGGSDFQFYSEGVFTGS-CGTE---LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGE 191
Query: 328 QGYVLMS----IKDNNCGVMTAPTYVTM 351
+GY+ M K+ CG+ +Y
Sbjct: 192 KGYIRMERGISDKEGLCGIAMEASYPIK 219
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 251 bits (643), Expect = 2e-83
Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F +EG ++ L S+Q L+DC + GC+GG + + Q +
Sbjct: 18 NQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCD--RRSYGCNGGYPWSALQLV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
++G+ ++ Y PY G YC A G V P +E AL ++A + PVSV
Sbjct: 76 AQYGIHYRNTY-PYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIA-NQPVSVV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A+ K F Y G++ N +DHAV AVGY G Y +KNSW T WG G
Sbjct: 134 LEAAGKDFQLYRGGIFVGPCGNK----VDHAVAAVGY----GPNYILIKNSWGTGWGENG 185
Query: 330 YVLMSIKDNN----CGVMTAPTY 348
Y+ + N CG+ T+ Y
Sbjct: 186 YIRIKRGTGNSYGVCGLYTSSFY 208
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 251 bits (644), Expect = 4e-83
Identities = 73/213 (34%), Positives = 107/213 (50%), Gaps = 19/213 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
Q CGS W+F TGA+E A+ + L LS+Q LIDC + GC G ++S++W+
Sbjct: 19 FQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCV--DESEGCYNGWHYQSFEWV 76
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGF-------VNVTPNSEDALKLALAK 262
+KH G+ ++ DY PY +D C T+ + + +E +L+ +
Sbjct: 77 VKHGGIASEADY-PYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVL- 134
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWS 322
P+SV+IDA F FY G+Y C+ SP G++H VL VGYG DG YW KNSW
Sbjct: 135 EQPISVSIDAK--DFHFYSGGIYDGGNCS-SPYGINHFVLIVGYGSEDGVDYWIAKNSWG 191
Query: 323 TYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 351
WG GY+ + CG+ +Y +
Sbjct: 192 EDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 250 bits (640), Expect = 5e-83
Identities = 67/203 (33%), Positives = 97/203 (47%), Gaps = 17/203 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F + AVEG + +L LS+Q L+DC + GC GG + Q++
Sbjct: 18 NQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCE--RRSYGCRGGFPLYALQYV 75
Query: 211 MKHGLPTQDDYGPYLGQDAYCHIANTTAT-ATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
G+ + Y PY G C + G V N+E AL +A PVS+
Sbjct: 76 ANSGIHLRQYY-PYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIA-IQPVSIV 133
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
++A ++F Y G++ C S +DHAV AVGY G Y +KNSW T WG G
Sbjct: 134 VEAKGRAFQNYRGGIFAGP-CGTS---IDHAVAAVGY----GNDYILIKNSWGTGWGEGG 185
Query: 330 YVLMS----IKDNNCGVMTAPTY 348
Y+ + CGV++ +
Sbjct: 186 YIRIKRGSGNPQGACGVLSDSVF 208
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 251 bits (643), Expect = 7e-83
Identities = 83/211 (39%), Positives = 110/211 (52%), Gaps = 17/211 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGSCW+F T +VEG ++ L LS+Q LIDC N+GC GG ++++I
Sbjct: 21 DQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD-TADNDGCQGGLMDNAFEYI 79
Query: 211 MKH-GLPTQDDYGPYLGQDAYCH----IANTTATATMTGFVNVTPNSEDALKLALAKHGP 265
+ GL T+ Y PY C+ N+ + G +V NSE+ L A+A + P
Sbjct: 80 KNNGGLITEAAY-PYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVA-NQP 137
Query: 266 VSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTY 324
VSVA++AS K+F FY GV+ E C LDH V VGYG DGK YW VKNSW
Sbjct: 138 VSVAVEASGKAFMFYSEGVFTGE-CGTE---LDHGVAVVGYGVAEDGKAYWTVKNSWGPS 193
Query: 325 WGNQGYVLMSIKDNN----CGVMTAPTYVTM 351
WG QGY+ + CG+ +Y
Sbjct: 194 WGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 249 bits (638), Expect = 1e-82
Identities = 73/206 (35%), Positives = 108/206 (52%), Gaps = 16/206 (7%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGSCW+F G VE +++ L LS+Q L+ C ++GC GG +++WI
Sbjct: 18 DQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD--KTDSGCSGGLMNNAFEWI 75
Query: 211 MKH---GLPTQDDYGPYLGQDAY---CHIANTTATATMTGFVNVTPNSEDALKLALAKHG 264
++ + T+D Y PY + C + T AT+TG V + + E + LA +G
Sbjct: 76 VQENNGAVYTEDSY-PYASGEGISPPCTTSGHTVGATITGHVELPQD-EAQIAAWLAVNG 133
Query: 265 PVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTY 324
PV+VA+DAS S+ Y GV + + LDH VL VGY + PYW +KNSW+T
Sbjct: 134 PVAVAVDAS--SWMTYTGGVM----TSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQ 187
Query: 325 WGNQGYVLMSIKDNNCGVMTAPTYVT 350
WG +GY+ ++ N C V +
Sbjct: 188 WGEEGYIRIAKGSNQCLVKEEASSAV 213
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 245 bits (629), Expect = 7e-81
Identities = 72/217 (33%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ++CGSCW+F + G+VE Y ++ K L + S+Q L+DCS NNGC GG ++ +
Sbjct: 37 DQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCS--VKNNGCYGGYITNAFDDM 94
Query: 211 MKH-GLPTQDDYGPYLGQ-DAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
+ GL +QDDY PY+ C++ T+ +V++ +D K AL GP+S+
Sbjct: 95 IDLGGLCSQDDY-PYVSNLPETCNLKRCNERYTIKSYVSIP---DDKFKEALRYLGPISI 150
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGKPYWQVK 318
+I AS F+FY G YD +C + +HAV+ VGYG ++ Y+ +K
Sbjct: 151 SIAASD-DFAFYRGGF-YDGECGAA---PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIK 205
Query: 319 NSWSTYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 351
NSW + WG GY+ + C + T +
Sbjct: 206 NSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLL 242
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 244 bits (624), Expect = 5e-80
Identities = 53/235 (22%), Positives = 80/235 (34%), Gaps = 39/235 (16%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ C + W F + +E MK + +S + +C G + CD G + I
Sbjct: 27 DQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86
Query: 211 MKH--GLPTQDDYGPYLGQDAYCHIA-------------------NTTATATMTGFVNVT 249
++ LP + +Y PY N + G+
Sbjct: 87 IEDYGFLPAESNY-PYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYE 145
Query: 250 PNS--------EDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAV 301
+K + G V I A + +G C D DHAV
Sbjct: 146 SERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMG-YEFSGKKVKNLC--GDDTADHAV 202
Query: 302 LAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVT 350
VGYG E + K YW V+NSW YWG++GY + + +C + V
Sbjct: 203 NIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVI 257
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 239 bits (612), Expect = 2e-78
Identities = 67/217 (30%), Positives = 115/217 (52%), Gaps = 27/217 (12%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CGSCW+F + G+VE Y ++ KL LS+Q L+DCS + N GC+GG +++ +
Sbjct: 35 DQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCS--FKNYGCNGGLINNAFEDM 92
Query: 211 MKH-GLPTQDDYGPYLG-QDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSV 268
++ G+ DY PY+ C+I T + +++V ++ LK AL GP+S+
Sbjct: 93 IELGGICPDGDY-PYVSDAPNLCNIDRCTEKYGIKNYLSVP---DNKLKEALRFLGPISI 148
Query: 269 AIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYG----------ELDGKPYWQVK 318
++ S F+FY G+ +D +C + L+HAV+ VG+G + + Y+ +K
Sbjct: 149 SVAVS-DDFAFYKEGI-FDGECGDQ---LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIK 203
Query: 319 NSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 351
NSW WG +G++ + ++ CG+ T +
Sbjct: 204 NSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 215 bits (550), Expect = 1e-69
Identities = 73/201 (36%), Positives = 101/201 (50%), Gaps = 17/201 (8%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
+Q CGSCW+F T VE ++ L LS+Q L+DC N+GC GG +YQ+I
Sbjct: 18 NQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCD--KKNHGCLGGAFVFAYQYI 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ + G+ TQ +Y PY C A + ++ G+ V +E ALK A+A P +VA
Sbjct: 76 INNGGIDTQANY-PYKAVQGPCQ-AASKV-VSIDGYNGVPFCNEXALKQAVA-VQPSTVA 131
Query: 270 IDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 329
IDAS F Y +G++ L+H V VGY YW V+NSW YWG +G
Sbjct: 132 IDASSAQFQQYSSGIFSGPCGTK----LNHGVTIVGY----QANYWIVRNSWGRYWGEKG 183
Query: 330 YVLMS--IKDNNCGVMTAPTY 348
Y+ M CG+ P Y
Sbjct: 184 YIRMLRVGGCGLCGIARLPYY 204
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 217 bits (554), Expect = 3e-67
Identities = 63/213 (29%), Positives = 94/213 (44%), Gaps = 16/213 (7%)
Query: 150 LDQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSY 207
+Q+ CGSC+SF + G +E + +LS Q ++ CS GC+GG +
Sbjct: 226 RNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCS--QYAQGCEGGFPYLIA 283
Query: 208 QWIMK-HGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP----NSEDALKLALAK 262
+ GL + + PY G D+ C + + + V +E +KL L
Sbjct: 284 GKYAQDFGLVEEACF-PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVH 342
Query: 263 HGPVSVAIDASQKSFSFYVNGVYYDEKC---NNSPDGLDHAVLAVGYGE--LDGKPYWQV 317
HGP++VA + F Y G+Y+ N + +HAVL VGYG G YW V
Sbjct: 343 HGPMAVAFEVYD-DFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIV 401
Query: 318 KNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 350
KNSW T WG GY + + C + + T
Sbjct: 402 KNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 210 bits (536), Expect = 1e-66
Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 35/225 (15%)
Query: 151 DQSV---CGSCWSFGTTGAVEGAYYMKHK---KLAVLSQQALIDCSWGYGNNGCDGGEDF 204
+Q + CGSCW+ +T A+ +K K +LS Q +IDC C+GG D
Sbjct: 56 NQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG---NAGSCEGGNDL 112
Query: 205 RSYQWIMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNV-------------TPN 251
+ + +HG+P + Y +D C N T + + +
Sbjct: 113 SVWDYAHQHGIPDETCN-NYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLS 171
Query: 252 SEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDG 311
+ + + +GP+S I A++ + Y G+Y + + ++H V G+G DG
Sbjct: 172 GREKMMAEIYANGPISCGIMATE-RLANYTGGIYAEYQDTTY---INHVVSVAGWGISDG 227
Query: 312 KPYWQVKNSWSTYWGNQGYVLM--------SIKDNNCGVMTAPTY 348
YW V+NSW WG +G++ + N + T+
Sbjct: 228 TEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTF 272
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 208 bits (532), Expect = 3e-65
Identities = 60/223 (26%), Positives = 87/223 (39%), Gaps = 31/223 (13%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMK-HKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQW 209
DQS CGSCW+ A+ + + +S L+ C G+ GC+GG+ R++ +
Sbjct: 93 DQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAWAY 151
Query: 210 IMKHGLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTP------------------- 250
GL + PY H + + F TP
Sbjct: 152 FSSTGLVSDYCQ-PYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSW 210
Query: 251 -----NSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVG 305
ED L GP VA D + F Y +GVY+ HAV VG
Sbjct: 211 TSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVYHHVSGQYL---GGHAVRLVG 266
Query: 306 YGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 348
+G +G PYW++ NSW+T WG GY L+ + CG+ +
Sbjct: 267 WGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSA 309
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 205 bits (524), Expect = 3e-64
Identities = 56/231 (24%), Positives = 87/231 (37%), Gaps = 37/231 (16%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
DQ CGSCW+FG A+ + +S + L+ C +GC+GG ++
Sbjct: 85 DQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 144
Query: 209 WIMKHGLPTQDDYG------PYLGQDAYCHIANTTATATMTGFVNV-------------- 248
+ + GL + Y PY H+ + T G
Sbjct: 145 FWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYK 204
Query: 249 -----------TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGL 297
NSE + + K+GPV A F Y +GVY
Sbjct: 205 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVTGEMM---G 260
Query: 298 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 348
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVA 311
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 202 bits (517), Expect = 8e-64
Identities = 55/225 (24%), Positives = 84/225 (37%), Gaps = 37/225 (16%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKL--AVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
DQ CGS W+FG A+ + +S + L+ C +GC+GG ++
Sbjct: 28 DQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWN 87
Query: 209 WIMKHGLPTQDDYG------PYLGQDAYCHIANTTATATMTGFVNV-------------- 248
+ + GL + Y PY H+ T G
Sbjct: 88 FWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYK 147
Query: 249 -----------TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGL 297
NSE + + K+GPV A F Y +GVY
Sbjct: 148 QDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVTGEMM---G 203
Query: 298 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 342
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 248
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 202 bits (515), Expect = 3e-63
Identities = 46/236 (19%), Positives = 75/236 (31%), Gaps = 25/236 (10%)
Query: 130 NKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALI-- 187
K+ A+P + ++ + DQ GSC + A++ + + + I
Sbjct: 50 EKSVIAALPPKVDLTPPFQVYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFIYY 109
Query: 188 DCSWGYGNNGCDGGEDFRSYQWIM-KHGLPTQDDYGPYLGQDAYCHIANTTATA------ 240
+ G+ D G R ++ K G+ + ++ PY A A
Sbjct: 110 NERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEW-PYGDTPADPRTEEFPPGAPASKKP 168
Query: 241 -----------TMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEK 289
+T + V D LK LA P V
Sbjct: 169 SDQCYKDAQNYKITEYSRV-AQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLP 227
Query: 290 CNNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS-IKDNNCGVMT 344
N HAVL VGY D +++++NSW G GY M +N +
Sbjct: 228 TKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQLAD 281
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 197 bits (503), Expect = 2e-62
Identities = 77/208 (37%), Positives = 107/208 (51%), Gaps = 13/208 (6%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQWI 210
DQ CG CW+FG TGA+EG + +L +S+Q ++DC GG+ +++W+
Sbjct: 18 DQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCD--TXXXXXXGGDADDAFRWV 75
Query: 211 MKH-GLPTQDDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALKLALAKHGPVSVA 269
+ + G+ + +Y PY G D C N A + G+ NV PNS AL A+A PVSV
Sbjct: 76 ITNGGIASDANY-PYTGVDGTCD-LNKPIAARIDGYTNV-PNSSSALLDAVA-KQPVSVN 131
Query: 270 IDASQKSFSFYVN-GVYYDEKCNNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGN 327
I S SF Y G++ C++ P +DH VL VGYG YW VKNSW T WG
Sbjct: 132 IYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGI 191
Query: 328 QGYVLMS----IKDNNCGVMTAPTYVTM 351
GY+L+ D C + +Y T
Sbjct: 192 DGYILIRRNTNRPDGVCAIDAWGSYPTK 219
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 191 bits (487), Expect = 2e-59
Identities = 55/232 (23%), Positives = 86/232 (37%), Gaps = 39/232 (16%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKH--KKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQ 208
DQS CGSCW+FG A+ ++ K+ LS L+ C G GC+GG ++
Sbjct: 24 DQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGL-GCEGGILGPAWD 82
Query: 209 WIMKHGLPTQDDYGPYLGQDAY-----------------------------CHIANTTAT 239
+ +K G+ T + G + Y C T
Sbjct: 83 YWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPY 142
Query: 240 ATMTGFVNV---TPNSEDALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDG 296
N E A++ + K+GPV + F Y +G+Y
Sbjct: 143 TQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE-DFLNYKSGIYKHITGETL--- 198
Query: 297 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 348
HA+ +G+G + PYW + NSW+ WG GY + + C + + T
Sbjct: 199 GGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTA 250
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 46.4 bits (109), Expect = 8e-06
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 297 LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS 334
DH + G + +G Y+ VKNSW T G S
Sbjct: 316 DDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYAS 354
Score = 42.5 bits (99), Expect = 1e-04
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 151 DQSVCGSCWSFGTTGAVEGAYYMKHKKLAVLSQQALIDCSWG---------YGN-NGCDG 200
+Q+ G+CW + + +E K LS+ + ++ +G+ + G
Sbjct: 27 NQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQG 86
Query: 201 GEDFRSYQWIMKHGLPTQDDY 221
G + + + GL +++
Sbjct: 87 GSFYDALYGMETFGLVPEEEM 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 5e-05
Identities = 54/364 (14%), Positives = 101/364 (27%), Gaps = 121/364 (33%)
Query: 4 TFLPLLLLSVGMVKTYQLSKNGTNGLSLKVAPMTTETELNKISCFHAY-------GIPDA 56
F +L L + + L N + L+ K+ T + Y P
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 57 TIEPQSVLPDVSDFKVNIYRLF---------F--LRPRFHENEKIRYNWTY--IGEELVN 103
++ V + + +F F LR + TY + +L+
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ---------TYHVLVGDLIK 189
Query: 104 GIILEKWRLVTSEGEKVSKYSL------WVRYNKASK------DAIPV-----------R 140
L+ + + ++ W+ N ++ +IP+
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 141 Y----EMKGYN-SLLDQSVCGSCWSFGTTGAVEG--------------AYYMKHKK-LAV 180
Y ++ G+ L + G TG +G ++++ +K + V
Sbjct: 249 YVVTAKLLGFTPGELRSYLK------GATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 181 L------SQQA----------LIDCSWGYGNNGCDGGEDFRSYQWIMKH--GLPTQ---- 218
L +A L D + E S M L +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDS--------LENNEGVPSP---MLSISNLTQEQVQD 351
Query: 219 --DDYGPYLGQDAYCHIA--NTTATATMTGFVNVTPNSEDALKLALAKHGPVSVAIDASQ 274
+ +L I+ N ++G P S L L L K +D S+
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGP----PQSLYGLNLTLRKA-KAPSGLDQSR 406
Query: 275 KSFS 278
FS
Sbjct: 407 IPFS 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 9e-05
Identities = 42/372 (11%), Positives = 99/372 (26%), Gaps = 119/372 (31%)
Query: 11 LSVGMVKT------------YQLSKNGTNGL----SLKVAPMTTETELNKISCFHAYGIP 54
L++ + YQ+ N T+ ++K+ + + EL ++ Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--E 244
Query: 55 DATIEPQSVLPDVSDFKVNIYRLFFLRPRFHENEKI----RY--NWTYIGEELVNGIILE 108
+ + VL +V + + F L KI R+ ++ I L+
Sbjct: 245 NCLL----VLLNVQN--AKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLD 292
Query: 109 KWRLVTSEGEKVSKYSLWVRYNKASKDAIPVRYEMKGYNSLLDQSVCGSCWSFGTTGAVE 168
+ + E S ++ +P E+ N S+
Sbjct: 293 HHSMTLTPDEVKSLLLKYL---DCRPQDLPR--EVLTTNPRR-LSIIA------------ 334
Query: 169 GAYYMKHKKLAVLSQQALIDCSWGYGNNGCDGGEDFRSYQW-----IMKHGLPTQDDYGP 223
+ +W ++ I++ L + P
Sbjct: 335 ----------ESIRDGL---ATWDN----------WKHVNCDKLTTIIESSLNVLE---P 368
Query: 224 YLGQDAY--CHIANTTATATMTGF---VNVTPN----------SEDALKLA--LAKHGPV 266
+ + + F ++ D + + L K+
Sbjct: 369 AEYRKMFDRLSV-----------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-- 415
Query: 267 SVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELDGKPYWQ-VKNSWSTYW 325
++ K + + +Y + K + H + Y + Y+
Sbjct: 416 --LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 326 GNQ-GYVLMSIK 336
+ G+ L +I+
Sbjct: 474 YSHIGHHLKNIE 485
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 35.9 bits (82), Expect = 0.017
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 254 DALKLALAKHGPVSVAIDASQKSFSFYVNGVYYDEKCNNSPDGLDHAVLAVGYGELD--- 310
D K +K G + + + F + + E+ + HA+ E D
Sbjct: 326 DVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQD 385
Query: 311 GKP-YWQVKNSWSTYWGNQGYVLMS 334
G W+V+NSW G++GY+ M+
Sbjct: 386 GAFTKWRVENSWGEDHGHKGYLCMT 410
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 35.5 bits (81), Expect = 0.021
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 19/109 (17%)
Query: 245 FVNVTPNS-EDALKLALAKHGPVSVAIDASQKSFS----FYVNGVYYDEKCNNSPD---- 295
++NV + + L + V + + Y N P
Sbjct: 303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKAS 362
Query: 296 -------GLDHAVLAVGYG--ELDGKP-YWQVKNSWSTYWGNQGYVLMS 334
+ A+L G E P ++V+NSW G G +M+
Sbjct: 363 RIRYHESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMT 411
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.17
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 253 EDALKLALAKHGPVSVAIDAS 273
+ +LKL P ++AI A+
Sbjct: 26 QASLKLYADDSAP-ALAIKAT 45
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and
peptides, structural genomics; 1.90A {Thermus
thermophilus}
Length = 192
Score = 27.1 bits (59), Expect = 6.6
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 219 DDYGPYLGQDAYCHIANTTATATMTGFVNVTPNSEDALK 257
G YL A+ GF+++ P+ ALK
Sbjct: 132 LSAGSYLCNQAFYLSLYRLPEEVPVGFLHLPPDETLALK 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.422
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,454,553
Number of extensions: 320586
Number of successful extensions: 861
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 55
Length of query: 351
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 257
Effective length of database: 4,077,219
Effective search space: 1047845283
Effective search space used: 1047845283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)