Query psy3961
Match_columns 371
No_of_seqs 168 out of 1925
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:46:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09395 actP acetate permease 100.0 1.1E-43 2.4E-48 361.5 36.5 293 4-365 31-325 (551)
2 PRK12488 acetate permease; Pro 100.0 1.6E-43 3.5E-48 359.8 35.7 295 3-366 28-324 (549)
3 PRK09442 panF sodium/panthothe 100.0 5.2E-42 1.1E-46 344.9 36.2 296 5-367 1-301 (483)
4 TIGR02711 symport_actP cation/ 100.0 3.8E-42 8.2E-47 349.8 34.9 293 4-365 29-323 (549)
5 KOG2349|consensus 100.0 4.5E-46 9.7E-51 367.9 5.2 299 7-370 8-307 (585)
6 TIGR02121 Na_Pro_sym sodium/pr 100.0 1.6E-41 3.4E-46 341.5 36.0 285 8-366 2-294 (487)
7 PRK10484 putative transporter; 100.0 2.5E-41 5.4E-46 342.7 36.2 293 8-366 2-307 (523)
8 PRK15419 proline:sodium sympor 100.0 9.6E-41 2.1E-45 336.8 35.6 212 5-219 3-222 (502)
9 TIGR02119 panF sodium/pantothe 100.0 7.4E-40 1.6E-44 328.5 34.5 293 7-367 1-300 (471)
10 TIGR00813 sss transporter, SSS 100.0 5E-39 1.1E-43 317.0 31.8 263 43-369 1-269 (407)
11 TIGR03648 Na_symport_lg probab 100.0 2.7E-39 5.8E-44 329.7 30.4 193 10-207 2-195 (552)
12 COG4145 PanF Na+/panthothenate 100.0 1.8E-38 3.9E-43 292.7 29.6 292 10-369 4-301 (473)
13 PF00474 SSF: Sodium:solute sy 100.0 1.9E-39 4.1E-44 319.9 23.9 313 40-367 1-328 (406)
14 COG0591 PutP Na+/proline sympo 100.0 5.1E-38 1.1E-42 315.3 33.9 293 6-367 2-300 (493)
15 COG4147 DhlC Predicted symport 100.0 2.5E-34 5.5E-39 273.7 21.2 293 4-365 3-299 (529)
16 COG4146 Predicted symporter [G 100.0 1.3E-30 2.9E-35 240.4 13.5 297 6-370 2-313 (571)
17 KOG3761|consensus 99.9 3.1E-25 6.8E-30 202.3 1.1 200 8-207 5-214 (591)
18 KOG2348|consensus 99.8 1.8E-18 3.8E-23 163.9 8.9 202 18-220 24-231 (667)
19 PF03845 Spore_permease: Spore 98.4 0.00024 5.2E-09 67.9 26.5 153 46-199 1-154 (320)
20 TIGR00912 2A0309 spore germina 98.4 1.9E-05 4E-10 76.7 18.8 149 45-194 1-151 (359)
21 PRK11017 codB cytosine permeas 98.1 0.00025 5.5E-09 70.1 17.8 217 48-285 11-230 (404)
22 TIGR00814 stp serine transport 98.0 0.0033 7.1E-08 62.0 24.9 150 52-205 8-169 (397)
23 TIGR00835 agcS amino acid carr 98.0 0.0012 2.7E-08 65.1 21.1 149 45-194 45-202 (425)
24 PF01566 Nramp: Natural resist 98.0 0.0021 4.5E-08 62.5 22.7 110 70-180 5-116 (358)
25 TIGR00837 araaP aromatic amino 97.9 0.0038 8.3E-08 61.1 22.5 140 58-199 8-155 (381)
26 TIGR01773 GABAperm gamma-amino 97.9 0.022 4.8E-07 57.1 27.6 112 43-154 10-122 (452)
27 PRK00701 manganese transport p 97.8 0.0079 1.7E-07 60.1 23.7 131 46-180 36-168 (439)
28 PF03222 Trp_Tyr_perm: Tryptop 97.8 0.0083 1.8E-07 59.1 23.3 218 50-288 6-234 (394)
29 TIGR00909 2A0306 amino acid tr 97.7 0.014 3E-07 58.0 23.8 160 44-203 2-178 (429)
30 PRK10249 phenylalanine transpo 97.7 0.03 6.4E-07 56.3 25.4 149 44-193 20-170 (458)
31 TIGR03810 arg_ornith_anti argi 97.7 0.023 4.9E-07 57.3 24.1 156 45-200 1-165 (468)
32 COG1457 CodB Purine-cytosine p 97.6 0.012 2.5E-07 58.3 20.0 100 110-210 81-182 (442)
33 PF01235 Na_Ala_symp: Sodium:a 97.6 0.014 3E-07 57.5 20.5 138 45-183 17-164 (416)
34 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.015 3.2E-07 57.4 20.2 138 47-191 20-157 (416)
35 COG3949 Uncharacterized membra 97.5 0.013 2.7E-07 55.3 18.6 142 53-194 9-152 (349)
36 PRK15132 tyrosine transporter 97.5 0.073 1.6E-06 52.5 24.7 214 52-289 8-232 (403)
37 PRK10580 proY putative proline 97.5 0.14 3.1E-06 51.4 28.6 154 44-198 8-163 (457)
38 COG1115 AlsT Na+/alanine sympo 97.5 0.018 3.9E-07 56.5 19.6 143 42-185 58-210 (452)
39 TIGR01197 nramp NRAMP (natural 97.5 0.0089 1.9E-07 58.7 17.8 123 57-180 14-138 (390)
40 TIGR00905 2A0302 transporter, 97.5 0.13 2.9E-06 51.9 26.9 159 44-202 6-173 (473)
41 PRK10483 tryptophan permease; 97.4 0.15 3.3E-06 50.4 25.0 220 52-288 16-242 (414)
42 PRK11387 S-methylmethionine tr 97.4 0.16 3.4E-06 51.3 25.9 151 44-195 13-166 (471)
43 COG1113 AnsP Gamma-aminobutyra 97.4 0.13 2.9E-06 50.7 23.9 156 44-201 12-170 (462)
44 PRK11375 allantoin permease; P 97.3 0.022 4.8E-07 57.7 19.2 229 44-286 24-275 (484)
45 PRK11049 D-alanine/D-serine/gl 97.3 0.22 4.8E-06 50.2 27.6 160 43-203 18-179 (469)
46 PRK10238 aromatic amino acid t 97.3 0.23 4.9E-06 49.9 27.1 154 43-197 10-165 (456)
47 PRK10655 potE putrescine trans 97.3 0.22 4.7E-06 49.7 26.9 155 44-199 5-164 (438)
48 PRK10746 putative transport pr 97.2 0.16 3.5E-06 51.1 24.1 149 44-194 9-160 (461)
49 PRK10484 putative transporter; 97.2 0.00038 8.2E-09 71.2 4.6 33 248-280 253-285 (523)
50 PRK09664 tryptophan permease T 97.2 0.29 6.3E-06 48.4 24.9 140 52-193 14-161 (415)
51 TIGR00908 2A0305 ethanolamine 97.2 0.32 6.9E-06 48.5 25.4 145 44-189 6-152 (442)
52 PRK10836 lysine transporter; P 97.1 0.064 1.4E-06 54.4 20.1 154 43-197 13-169 (489)
53 TIGR00913 2A0310 amino acid pe 97.1 0.39 8.5E-06 48.4 27.2 147 45-192 2-152 (478)
54 PRK15049 L-asparagine permease 97.1 0.42 9.1E-06 48.7 26.6 153 44-197 27-183 (499)
55 PRK11021 putative transporter; 97.1 0.37 8.1E-06 47.6 25.8 139 47-185 1-142 (410)
56 TIGR00906 2A0303 cationic amin 97.1 0.28 6.1E-06 50.6 24.3 161 44-204 27-207 (557)
57 PRK10644 arginine:agmatin anti 97.0 0.49 1.1E-05 47.3 27.8 150 43-193 6-160 (445)
58 COG1953 FUI1 Cytosine/uracil/t 96.9 0.41 8.8E-06 47.9 22.8 227 43-284 37-286 (497)
59 COG0814 SdaC Amino acid permea 96.9 0.54 1.2E-05 46.7 25.2 150 51-205 13-172 (415)
60 TIGR00800 ncs1 NCS1 nucleoside 96.8 0.68 1.5E-05 46.4 27.0 164 44-210 11-191 (442)
61 TIGR00813 sss transporter, SSS 96.7 0.13 2.9E-06 50.7 18.1 31 254-284 218-248 (407)
62 TIGR02358 thia_cytX probable h 96.7 0.059 1.3E-06 53.0 15.2 165 104-290 55-224 (386)
63 PRK10197 gamma-aminobutyrate t 96.4 1.2 2.6E-05 44.6 26.1 139 58-197 5-145 (446)
64 PRK10435 cadB lysine/cadaverin 96.4 1.2 2.6E-05 44.4 26.9 108 44-154 4-113 (435)
65 PF13520 AA_permease_2: Amino 96.4 0.7 1.5E-05 45.7 20.9 142 49-192 3-152 (426)
66 PF02133 Transp_cyt_pur: Perme 96.4 0.4 8.7E-06 47.8 19.0 161 45-208 7-187 (440)
67 PRK11357 frlA putative fructos 96.1 1.7 3.7E-05 43.4 24.5 151 44-195 7-164 (445)
68 KOG2349|consensus 95.9 0.0019 4.2E-08 65.5 0.0 42 250-291 251-292 (585)
69 TIGR02121 Na_Pro_sym sodium/pr 95.9 0.0075 1.6E-07 61.2 4.0 26 254-279 246-271 (487)
70 PRK09928 choline transport pro 95.9 2.4 5.3E-05 44.4 22.0 188 4-199 55-278 (679)
71 PRK13629 threonine/serine tran 95.8 2.3 5.1E-05 42.4 24.5 147 54-205 26-185 (443)
72 COG0531 PotE Amino acid transp 95.6 2.7 5.8E-05 41.9 22.5 161 44-206 11-182 (466)
73 TIGR02119 panF sodium/pantothe 95.6 0.012 2.5E-07 59.5 4.1 32 254-285 251-282 (471)
74 TIGR00911 2A0308 L-type amino 95.6 3 6.6E-05 42.3 24.7 159 44-203 41-210 (501)
75 PRK12488 acetate permease; Pro 95.5 0.012 2.6E-07 60.6 3.7 28 254-281 276-303 (549)
76 PRK09442 panF sodium/panthothe 95.4 0.015 3.3E-07 58.8 4.1 27 254-280 252-278 (483)
77 TIGR02711 symport_actP cation/ 95.2 0.013 2.9E-07 60.3 3.0 32 254-285 276-307 (549)
78 PRK09395 actP acetate permease 95.0 0.023 4.9E-07 58.6 4.1 27 254-280 278-304 (551)
79 PF02554 CstA: Carbon starvati 94.9 4 8.7E-05 39.5 24.4 137 9-151 7-157 (376)
80 PTZ00206 amino acid transporte 94.7 5.2 0.00011 40.4 20.1 137 50-188 63-213 (467)
81 PF00474 SSF: Sodium:solute sy 94.2 0.03 6.6E-07 55.2 2.7 47 318-364 217-263 (406)
82 TIGR03648 Na_symport_lg probab 93.9 0.046 1E-06 56.4 3.4 27 253-279 253-279 (552)
83 COG1292 BetT Choline-glycine b 93.8 8.8 0.00019 39.0 22.4 186 4-200 50-275 (537)
84 KOG1303|consensus 93.2 9.9 0.00022 38.0 18.9 143 43-186 34-191 (437)
85 COG1966 CstA Carbon starvation 92.8 5.6 0.00012 40.4 15.6 142 3-150 1-156 (575)
86 PF02028 BCCT: BCCT family tra 92.7 13 0.00028 37.8 24.9 91 110-200 163-262 (485)
87 PRK09950 putative transporter; 91.1 19 0.00042 36.7 27.5 189 4-199 48-271 (506)
88 TIGR00842 bcct choline/carniti 90.8 19 0.00042 36.1 23.3 110 91-200 102-225 (453)
89 PRK15015 carbon starvation pro 90.0 12 0.00026 39.0 15.0 108 36-149 76-186 (701)
90 COG0833 LysP Amino acid transp 90.0 14 0.00031 37.6 15.3 162 44-208 43-211 (541)
91 TIGR03428 ureacarb_perm permea 89.9 23 0.0005 35.6 28.5 107 44-150 12-120 (475)
92 TIGR00930 2a30 K-Cl cotranspor 89.7 8.9 0.00019 42.3 14.8 148 43-190 74-235 (953)
93 PRK15419 proline:sodium sympor 89.6 0.79 1.7E-05 46.7 6.5 47 320-366 310-360 (502)
94 COG4147 DhlC Predicted symport 88.9 2.4 5.3E-05 42.2 8.8 48 237-288 239-286 (529)
95 PRK15238 inner membrane transp 88.8 29 0.00063 35.2 25.6 91 44-137 6-99 (496)
96 PRK03356 L-carnitine/gamma-but 88.2 33 0.00071 35.0 27.2 190 4-200 50-275 (504)
97 COG4146 Predicted symporter [G 87.8 0.16 3.5E-06 48.7 0.0 35 240-278 251-285 (571)
98 TIGR00796 livcs branched-chain 87.5 30 0.00066 33.9 16.2 145 54-205 2-158 (378)
99 PF00324 AA_permease: Amino ac 87.4 1.7 3.8E-05 43.7 7.3 144 58-201 8-160 (478)
100 COG4145 PanF Na+/panthothenate 84.5 1.3 2.9E-05 42.7 4.3 85 254-352 250-334 (473)
101 TIGR00910 2A0307_GadC glutamat 81.8 64 0.0014 32.9 17.8 87 45-135 4-93 (507)
102 PF01490 Aa_trans: Transmembra 80.2 0.14 3E-06 50.3 -4.3 146 45-191 1-158 (409)
103 KOG1304|consensus 80.0 26 0.00056 35.1 11.5 91 115-205 131-227 (449)
104 KOG1287|consensus 79.0 29 0.00062 35.1 11.6 152 44-199 11-173 (479)
105 COG0591 PutP Na+/proline sympo 76.9 2.8 6E-05 42.7 3.9 23 251-273 247-269 (493)
106 PF05525 Branch_AA_trans: Bran 75.7 90 0.002 31.2 14.6 152 48-205 4-165 (427)
107 KOG2466|consensus 75.6 97 0.0021 31.4 14.3 276 45-352 54-357 (572)
108 TIGR03813 put_Glu_GABA_T putat 70.5 1.2E+02 0.0026 30.4 24.3 136 47-186 3-151 (474)
109 PLN03074 auxin influx permease 69.3 1.3E+02 0.0029 30.4 20.0 129 56-186 55-199 (473)
110 TIGR00907 2A0304 amino acid pe 64.6 1.6E+02 0.0035 29.5 22.6 64 88-151 57-125 (482)
111 PF05545 FixQ: Cbb3-type cytoc 64.2 9.1 0.0002 25.5 3.0 32 8-40 10-41 (49)
112 PF03600 CitMHS: Citrate trans 57.1 1.8E+02 0.0039 27.7 13.2 66 152-218 219-290 (351)
113 KOG1286|consensus 55.7 19 0.00042 37.2 5.0 148 43-190 28-193 (554)
114 PF12273 RCR: Chitin synthesis 48.2 15 0.00033 30.0 2.5 20 8-27 3-22 (130)
115 PRK15433 branched-chain amino 44.2 1.2E+02 0.0026 30.4 8.4 66 110-175 267-332 (439)
116 PF10724 DUF2516: Protein of u 43.2 1E+02 0.0022 24.1 6.2 29 35-63 33-61 (100)
117 TIGR01197 nramp NRAMP (natural 40.5 2.4E+02 0.0052 27.8 9.9 47 110-156 282-328 (390)
118 cd01324 cbb3_Oxidase_CcoQ Cyto 37.6 47 0.001 22.1 3.0 29 9-38 12-40 (48)
119 PRK00701 manganese transport p 36.1 4.6E+02 0.0099 26.2 16.2 153 49-201 213-397 (439)
120 PF13268 DUF4059: Protein of u 31.9 59 0.0013 23.6 2.9 27 11-39 16-42 (72)
121 KOG1291|consensus 28.5 6.4E+02 0.014 25.6 14.9 100 66-169 48-150 (503)
122 PF01102 Glycophorin_A: Glycop 27.7 81 0.0018 25.6 3.5 26 8-33 69-94 (122)
123 PRK09877 2,3-diketo-L-gulonate 27.0 3.7E+02 0.0081 22.4 9.5 31 100-130 54-84 (157)
124 COG0733 Na+-dependent transpor 24.8 7.2E+02 0.016 25.0 17.9 158 53-210 15-197 (439)
125 PF03653 UPF0093: Uncharacteri 24.5 4.1E+02 0.009 22.1 8.8 97 9-105 12-112 (147)
126 PF04791 LMBR1: LMBR1-like mem 23.7 7.4E+02 0.016 24.7 14.9 73 48-122 29-123 (471)
127 PRK14984 high-affinity glucona 23.2 7.7E+02 0.017 24.7 11.2 100 72-174 48-154 (438)
128 KOG3761|consensus 22.8 21 0.00045 34.1 -0.9 30 250-279 253-282 (591)
129 PF11654 DUF2665: Protein of u 22.3 2.4E+02 0.0052 18.8 4.3 20 101-120 26-45 (47)
130 TIGR03647 Na_symport_sm probab 22.2 1.9E+02 0.004 21.5 4.2 42 57-105 28-69 (77)
131 PRK01741 cell division protein 20.4 80 0.0017 30.2 2.5 25 4-28 2-26 (332)
No 1
>PRK09395 actP acetate permease; Provisional
Probab=100.00 E-value=1.1e-43 Score=361.52 Aligned_cols=293 Identities=15% Similarity=0.257 Sum_probs=245.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI 83 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~ 83 (371)
.+|+.++.++++|+++++++|+|. +||+||.|||++|||++|+|..++++.||++|+.+++|.+|.+|++|+++.|+
T Consensus 31 ~~~~~~~~i~~~y~~~~l~iG~~~---~r~~~s~~df~~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~ 107 (551)
T PRK09395 31 PTNWQAIIMFLIFVVFTLGITYWA---AKRTRSASDFYTAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY 107 (551)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHh---hcccCCHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH
Confidence 467889999999999999999986 45678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy3961 84 NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGS-ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSIT 162 (371)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~-~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~ 162 (371)
.++..++.++..++++||+||.+..|++|++++|||+ ..|.+.+++.++..+.|+..|+.+.+.+++.++|+|++.+++
T Consensus 108 ~~~~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~~~~il 187 (551)
T PRK09395 108 SIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVV 187 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999889888888889999999999999999999995 599999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHhhhhCCccccccCCCCCcccccchhhH
Q psy3961 163 LVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG-GIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLI 241 (371)
Q Consensus 163 i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
+.++++++||..||+|+++|||.+|+++++++.+++.+.++.+.| |++++.+.+.+.++......+++.... .++..
T Consensus 188 i~~~i~~iYt~~GGm~av~~TD~iQ~iim~~g~ii~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 265 (551)
T PRK09395 188 LVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFMVMKHVGFSFENLFSEAVAVHPKGLAIMGPGGLVK-DPISA- 265 (551)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCcccc-chHHH-
Confidence 999999999999999999999999999999999888887778876 798888876554321110111111100 01110
Q ss_pred HhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccchH
Q psy3961 242 IGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQM 321 (371)
Q Consensus 242 ~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 321 (371)
+... +....+ ....|+
T Consensus 266 ~~~~---------------------------------------------------------------~~~~~g-~~~~p~ 281 (551)
T PRK09395 266 LSLG---------------------------------------------------------------LALMFG-TAGLPH 281 (551)
T ss_pred HHHH---------------------------------------------------------------HHHHHH-hhcccH
Confidence 0000 001122 223677
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3961 322 QVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYH 365 (371)
Q Consensus 322 ~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~ 365 (371)
.+||++++||+|++||+.+++..+...+.+...++|+.++.+++
T Consensus 282 ~~qR~~aaks~k~ar~~~~~~~~~~~~~~~~~~~iG~~a~~~~~ 325 (551)
T PRK09395 282 ILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAIVLVG 325 (551)
T ss_pred HHHhhhccCChHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999988888788888999999999885
No 2
>PRK12488 acetate permease; Provisional
Probab=100.00 E-value=1.6e-43 Score=359.78 Aligned_cols=295 Identities=14% Similarity=0.260 Sum_probs=246.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHH
Q psy3961 3 KSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVV 82 (371)
Q Consensus 3 ~~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~ 82 (371)
+.+++.++.++++|+++++++|+|. +||+||.|||++|||++|++.+++++.+|++|+.+++|.+|.+|++|+++.|
T Consensus 28 ~~~~~~~i~i~~~y~~~~l~ig~~~---~r~~~s~~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~ 104 (549)
T PRK12488 28 QPLNWTAIGMFMVFVLFTLGITRWA---ARRTRSASDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLL 104 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhe---eeccCChHHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHH
Confidence 3568888999999999999999985 5567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHH
Q psy3961 83 INISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG-SATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSI 161 (371)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg-~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~ 161 (371)
+.++..++.++..++++|++||.+..|+||++++||| +..|.+++++.++..+.|+..|+.+.|.+++.++|+|++.++
T Consensus 105 ~~~g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~~~~i 184 (549)
T PRK12488 105 YALGVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISYLYAV 184 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999888988888889999999999999999999999 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHhhhhCCccccccCCCCCcccccchhh
Q psy3961 162 TLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG-GIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTL 240 (371)
Q Consensus 162 ~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
++.++++++||.+||||+++|||.+|+++++++.+++.+..+.+.| |++++.+..++.++.......|+.... +.+.
T Consensus 185 ii~~~i~~~Yt~~GGm~av~~td~iQ~~im~~~~i~~~~~~l~~~g~g~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~- 262 (549)
T PRK12488 185 VIVGALMVLYVTFGGMLATTWVQIIKAVLLLSGTSFMAFMVLKHFGFSTEAMFASAVAVHAKGQAILAPGGLLS-NPID- 262 (549)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcCCccccc-CHHH-
Confidence 9999999999999999999999999999999999888888888887 788887766543221100111211100 0000
Q ss_pred HHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccch
Q psy3961 241 IIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQ 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 320 (371)
++...++ ...+.. ..|
T Consensus 263 ------------------------------------------------------------~~~~~l~---~~lg~~-~~p 278 (549)
T PRK12488 263 ------------------------------------------------------------AISLGLG---MMFGTA-GLP 278 (549)
T ss_pred ------------------------------------------------------------HHHHHHH---HHHHhc-cCc
Confidence 1111111 112222 356
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3961 321 MQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHN 366 (371)
Q Consensus 321 ~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~ 366 (371)
+.+||++++||+|++||+.+++..+...+.+...++|+.++++|++
T Consensus 279 ~~~qR~~aaks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~ 324 (549)
T PRK12488 279 HILMRFFTVSDAREARKSVLYATGFIGYFYLLIIVVGFGAIVMVGT 324 (549)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999999887777778889999999999853
No 3
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=100.00 E-value=5.2e-42 Score=344.92 Aligned_cols=296 Identities=21% Similarity=0.277 Sum_probs=235.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHH
Q psy3961 5 FGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVIN 84 (371)
Q Consensus 5 ~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~ 84 (371)
|++.+++++++|+++++++|+|.+++.|++++.|||++|||++|+++.++|+.||++|+++++|.+|.+|++|+++.|..
T Consensus 1 ~~~~~~~~i~~y~~~~~~ig~~~~r~~~~~~~~~dy~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~ 80 (483)
T PRK09442 1 MNLEVILPLVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLA 80 (483)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcccCCCcccceeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHH
Confidence 47788999999999999999997443334445799999999999999999999999999999999999999999876654
Q ss_pred HHHHHHHHHHHHHHHHHH----HhcCCCcHHHHHHHHhCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHH
Q psy3961 85 ISYVLATPIVAHIYLPVF----FKLGAVSVYEYLEKRFGSA-TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFY 159 (371)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~----rr~~~~Ti~d~l~~Ryg~~-~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~ 159 (371)
........+...+++|++ ||.|..|++|++|+|||++ .+.+.++..++..+++++.|+.+.+.+++.++|+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~ 160 (483)
T PRK09442 81 MIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISYET 160 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 433322223333455655 8999999999999999965 67788888888889999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchh
Q psy3961 160 SITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFT 239 (371)
Q Consensus 160 ~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
++++.++++++||.+||+|++++||.+|+++++++.+++....+.+.||++++.+.++++++ +.++ +....+...+.
T Consensus 161 ~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~-~~~~--~~~~~~~~~~~ 237 (483)
T PRK09442 161 GLLIFGITVALYTAFGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDP-QLVT--PQGADDILSPP 237 (483)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCc-cccC--CCCCCccccHH
Confidence 99999999999999999999999999999999999988888888889999999888765433 2221 11111000111
Q ss_pred hHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccc
Q psy3961 240 LIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGIN 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
...+..+ ....+.. ..
T Consensus 238 ~~~~~~~---------------------------------------------------------------~~~~g~~-~~ 253 (483)
T PRK09442 238 FMTSFWI---------------------------------------------------------------LVCFGVI-GL 253 (483)
T ss_pred HHHHHHH---------------------------------------------------------------HHHHHHh-CC
Confidence 1111000 0112222 34
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3961 320 QMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNC 367 (371)
Q Consensus 320 q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~~ 367 (371)
|+.+||++++||+|++||+.++++.+..++.+...+.|+.+++.+|+.
T Consensus 254 p~~~qR~~aaks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~ 301 (483)
T PRK09442 254 PHTAVRCMSYKDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDL 301 (483)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 557899999999999999999999988888899999999999998874
No 4
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=100.00 E-value=3.8e-42 Score=349.77 Aligned_cols=293 Identities=16% Similarity=0.269 Sum_probs=243.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI 83 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~ 83 (371)
.+++.+++++++|+++++++|+|. +||+|+.|||++|||++|++.+++++.+|++|+.+++|.+|.+|++|+++.|+
T Consensus 29 ~~~~~~~~~~~~y~~~~l~ig~~~---~r~~~~~~dy~laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~ 105 (549)
T TIGR02711 29 PLNIQAIIMFLLFVGFTLYITYWA---SKKTRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIY 105 (549)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh---hcccCCchhheeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 456777888999999999999985 55678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy3961 84 NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG-SATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSIT 162 (371)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg-~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~ 162 (371)
.++..++.++..++++|++||.+..|++|++++||| +..|.+.++..++..+.|++.|+.+.+.+++.++|+|++.+++
T Consensus 106 ~~g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~~~~ii 185 (549)
T TIGR02711 106 SLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHVAVV 185 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999988988888899999999999999999999998 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHhhhhCCccccccCCCCCcccccchhhH
Q psy3961 163 LVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG-GIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLI 241 (371)
Q Consensus 163 i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g-G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (371)
+.++++++||.+||+|+++|||.+|+++++++.+++.+....+.| |++++.+...+.++.......|+.....+ +..
T Consensus 186 i~~~i~~~Yt~~GGm~av~~td~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 263 (549)
T TIGR02711 186 LVGILMVMYVLFGGMLATTWVQIIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDP-ISA- 263 (549)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccch-HHH-
Confidence 999999999999999999999999999999999888877777776 68887766544322111111121111111 110
Q ss_pred HhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccchH
Q psy3961 242 IGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQM 321 (371)
Q Consensus 242 ~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 321 (371)
+... +....+. ...|+
T Consensus 264 ~~~~---------------------------------------------------------------~~~~lg~-~g~P~ 279 (549)
T TIGR02711 264 LSLG---------------------------------------------------------------LGLMFGT-AGLPH 279 (549)
T ss_pred HHHH---------------------------------------------------------------HHHHHHh-cCCch
Confidence 0000 0012222 23666
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3961 322 QVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYH 365 (371)
Q Consensus 322 ~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~ 365 (371)
.+||++++||+|++||+..++..+...+.+...+.|+.++.+++
T Consensus 280 ~~~R~~taks~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~ 323 (549)
T TIGR02711 280 ILMRFFTVSDAKEARKSVFYATGFMGYFYILTFIIGFGAILLVS 323 (549)
T ss_pred hheeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88999999999999999999988888888888999999998874
No 5
>KOG2349|consensus
Probab=100.00 E-value=4.5e-46 Score=367.90 Aligned_cols=299 Identities=38% Similarity=0.765 Sum_probs=278.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHH
Q psy3961 7 IVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINIS 86 (371)
Q Consensus 7 ~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~ 86 (371)
+.|+.++..|+++..++|.|..+++|+. +.|||++|||++.++-+++|++||.+|+.+++|.|+++|.+|+..+++.+.
T Consensus 8 ~~d~~v~~l~~~~~~~ig~~~~~~~~~~-t~~~y~l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~ 86 (585)
T KOG2349|consen 8 AADYSVFVLYFLLVMAIGLWFGFRTKRG-TVEEYFLGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWN 86 (585)
T ss_pred ccchhHHHHHHHHhhhheeeEEEEcCCc-cHhhhhhcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHH
Confidence 6899999999999999999987655555 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy3961 87 YVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGL 166 (371)
Q Consensus 87 ~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~ 166 (371)
..+...+.++++.|.+.|.+..|.+||+|+||+++.|.+.++..++..+.++.+.+++.+..++..+|++.+...++...
T Consensus 87 ~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ 166 (585)
T KOG2349|consen 87 ALLSVLLLGWIFIPVFYRLGVTTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLYLIVVILGL 166 (585)
T ss_pred HHHHHHhhheEEEEEEEecCeeehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCceeehHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccc-cCCCCCcccccchhhHHhhH
Q psy3961 167 VCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFF-NLSPDPTTRHSWFTLIIGGI 245 (371)
Q Consensus 167 i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 245 (371)
++++||..||+|+|+|||.+|.++|+.+...+.+.+..+.||.+.++|...+..|.+.. ++++++..+.++|.+++|+
T Consensus 167 ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg- 245 (585)
T KOG2349|consen 167 ICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGG- 245 (585)
T ss_pred HHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCC-
Confidence 99999999999999999999999999999999999999999999999988877776665 4666666666666554444
Q ss_pred HHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccchHHHHH
Q psy3961 246 FTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQR 325 (371)
Q Consensus 246 ~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr 325 (371)
.+.|+++++.||.++||
T Consensus 246 ---------------------------------------------------------------~~~~l~~~~vnQ~~VQR 262 (585)
T KOG2349|consen 246 ---------------------------------------------------------------TIMWLSYYGVNQLIVQR 262 (585)
T ss_pred ---------------------------------------------------------------cHHHHHHHhhhHHHHhH
Confidence 44899999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy3961 326 YLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPI 370 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~~~p~ 370 (371)
+++.||++++|++++++.++.+...+..+++|++.|++|+||||+
T Consensus 263 ~lsl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl 307 (585)
T KOG2349|consen 263 YLSLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPL 307 (585)
T ss_pred HhccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcc
Confidence 999999999999999999999999999999999999999999996
No 6
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=100.00 E-value=1.6e-41 Score=341.49 Aligned_cols=285 Identities=24% Similarity=0.320 Sum_probs=231.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHH
Q psy3961 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISY 87 (371)
Q Consensus 8 ~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~ 87 (371)
++++++++|+++++++|+|. +||+||.|||++|||++|++..++|+.||++|+++++|.||.+|++|+++.|+.++.
T Consensus 2 ~~~~~~~~y~~~~l~iG~~~---~r~~~s~~df~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~ 78 (487)
T TIGR02121 2 EILITFGVYLIIMLLIGFYA---YKKTTNLSDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGL 78 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hcccCchHHHeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHH
Confidence 57888999999999999986 456778999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHH-----hcCCCcHHHHHHHHhCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHH
Q psy3961 88 VLATPIVAHIYLPVFF-----KLGAVSVYEYLEKRFGS---ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFY 159 (371)
Q Consensus 88 ~~~~~l~~~~~~~~~r-----r~~~~Ti~d~l~~Ryg~---~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~ 159 (371)
.++.++..++++||+| |+|..|++|++|+|||+ ..|.+.+++.++...+|++.|+.+.+.+++.++|+|++.
T Consensus 79 ~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~ 158 (487)
T TIGR02121 79 TIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDYKT 158 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 8887777788899988 67899999999999995 367778888888888999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchh
Q psy3961 160 SITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFT 239 (371)
Q Consensus 160 ~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (371)
++++.++++++||.+||+|+|++||.+|+++++++++++.+..+.+.||++++.+.+++.++ +..+..++ .+++.
T Consensus 159 ~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~-~~~~~~~~----~~~~~ 233 (487)
T TIGR02121 159 GLLIGALIIVIYTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINP-HLLDMFKG----ASVIA 233 (487)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCc-cccCCCCC----CCHHH
Confidence 99999999999999999999999999999999999988888888889999999887765432 12121111 11111
Q ss_pred hHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccc
Q psy3961 240 LIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGIN 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
.++... ...+.. .+
T Consensus 234 -~~~~~~----------------------------------------------------------------~~~g~~-~~ 247 (487)
T TIGR02121 234 -IISLLA----------------------------------------------------------------WGLGYF-GQ 247 (487)
T ss_pred -HHHHHH----------------------------------------------------------------HHHHhc-cc
Confidence 111110 111222 35
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3961 320 QMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHN 366 (371)
Q Consensus 320 q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~ 366 (371)
|+.+||++++||+|++||+.+++..+.....+...+.|+.++..+++
T Consensus 248 p~~~qR~~aaks~k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 294 (487)
T TIGR02121 248 PHIIVRFMAIRSHKELPKARRIGMSWMILSLLGAIAVGLTGIAYFNK 294 (487)
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66778888888888888888777666555556666677777766654
No 7
>PRK10484 putative transporter; Provisional
Probab=100.00 E-value=2.5e-41 Score=342.68 Aligned_cols=293 Identities=23% Similarity=0.341 Sum_probs=226.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHH
Q psy3961 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISY 87 (371)
Q Consensus 8 ~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~ 87 (371)
+|++++.+|++++.++|++.+ ||+|.+|.|||++|||++|++.+++|+.||++|+.+++|.||.+|++|+++.++.++.
T Consensus 2 ~~i~~~~~~~~~~~~ig~~~~-r~~~~~s~~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~ 80 (523)
T PRK10484 2 LTILSFLGFTLLVAVISWWKT-RKTDTSSSDGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTA 80 (523)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-ccCCCCCchhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHH
Confidence 578899999999999999852 2223478999999999999999999999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH------HhCChhHHH
Q psy3961 88 VLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQM-VLYMGIALYAPAIALEA------VMGLSQFYS 160 (371)
Q Consensus 88 ~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~-~~~~~~q~~~~~~~l~~------~~gi~~~~~ 160 (371)
.++.++.+++++||+||.|..|+||++|+|||++.|.+.+.+.++.. ..++..++++.+..++. ++|+|+..+
T Consensus 81 ~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~ 160 (523)
T PRK10484 81 AIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAA 160 (523)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHH
Confidence 77877788889999999999999999999999988888777766554 44678888888877765 468988777
Q ss_pred HHH----HHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHhhhhCCccccccCCCCCccc
Q psy3961 161 ITL----VGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGG--IGEIWNIAHRNDRLEFFNLSPDPTTR 234 (371)
Q Consensus 161 ~~i----~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG--~~~i~~~~~~~~~~~~~~~~~~~~~~ 234 (371)
+.+ .++++++||..||+|+|++||.+|+++++++.+++.+.++.+.|| ..+..+++.++++ +.++..++..+.
T Consensus 161 ~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p-~~~~~~~~~~~~ 239 (523)
T PRK10484 161 IWLLVWLIGIIGAIYAVFGGLKAVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHP-EKLNSIGGATDP 239 (523)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCc-hhhcccCCCCCC
Confidence 654 466779999999999999999999999999988877777777653 3333444333222 111111111111
Q ss_pred ccchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHH
Q psy3961 235 HSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCS 314 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
.++. ....+..+....
T Consensus 240 ~~~~----------------------------------------------------------------~~~~~~~~~~~~ 255 (523)
T PRK10484 240 VPFP----------------------------------------------------------------TLFTGLILVNLF 255 (523)
T ss_pred CcHH----------------------------------------------------------------HHHHHHHHHHHH
Confidence 1221 112222223444
Q ss_pred HhccchHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3961 315 LYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHN 366 (371)
Q Consensus 315 ~~~~~q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~ 366 (371)
..+.+|+.+||++++||+|++||+.++++.+..+..+...++|+.++..||+
T Consensus 256 ~~~~~q~~~qR~~aak~~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~ 307 (523)
T PRK10484 256 YWCTNQSIVQRALGAKNLAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD 307 (523)
T ss_pred HHhCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556888899999999999999999988888888888888889999999986
No 8
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=100.00 E-value=9.6e-41 Score=336.84 Aligned_cols=212 Identities=24% Similarity=0.309 Sum_probs=191.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHH
Q psy3961 5 FGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVIN 84 (371)
Q Consensus 5 ~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~ 84 (371)
.+..+++++++|+++++++|+|. +||+||.|||++|||++|++.+++|+.||++|+++++|.||.+|++|+++.|+.
T Consensus 3 ~~~~~~~~~~~y~~~~l~iG~~~---~r~~~s~~dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~ 79 (502)
T PRK15419 3 ISTPMLVTFCVYIFGMILIGFIA---WRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIA 79 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH---hhcCCChhHheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHH
Confidence 45677889999999999999986 456788999999999999999999999999999999999999999999998988
Q ss_pred HHHHHHHHHHHHHHHHHHH-----hcCCCcHHHHHHHHhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q psy3961 85 ISYVLATPIVAHIYLPVFF-----KLGAVSVYEYLEKRFGSA---TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLS 156 (371)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~r-----r~~~~Ti~d~l~~Ryg~~---~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~ 156 (371)
++..++..+...+++||+| |.|..|+|||+|+|||++ .|.+.+++.++..++|++.|+++.+.+++.++|+|
T Consensus 80 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~ 159 (502)
T PRK15419 80 IGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888887766667777765 568999999999999953 67778888888899999999999999999999999
Q ss_pred hHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhC
Q psy3961 157 QFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRN 219 (371)
Q Consensus 157 ~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~ 219 (371)
++.++++.++++++||.+||+|+|+|||++|+++|+++.+++.+..+.+.||+++..+...+.
T Consensus 160 ~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~ 222 (502)
T PRK15419 160 YETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQK 222 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999888888888899999988876554
No 9
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=100.00 E-value=7.4e-40 Score=328.53 Aligned_cols=293 Identities=20% Similarity=0.275 Sum_probs=223.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCCccc-CcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHH
Q psy3961 7 IVDYAVFILMLVISGAIGIYYRFSGGKQK-TNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINI 85 (371)
Q Consensus 7 ~~~~~i~~~yl~~~l~ig~~~~~~~~~~~-~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~ 85 (371)
|.++.++++|+++++++|+|.+||.|+.+ +.|||++|||++|++..+.|++||++|+.+++|.+|.+|++|+++.+...
T Consensus 1 ~~~~~~~~~y~~~~~~ig~~~~r~~~~~~~~~~dy~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~ 80 (471)
T TIGR02119 1 WEVVIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAM 80 (471)
T ss_pred CchHHHHHHHHHHHHHHHHHHheeccCCCCCccceeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHH
Confidence 46889999999999999999743322222 24799999999999999999999999999999999999999997543322
Q ss_pred -HHHHHHHHH---HHHHHHHHHhcCCCcHHHHHHHHhCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHH
Q psy3961 86 -SYVLATPIV---AHIYLPVFFKLGAVSVYEYLEKRFGSA-TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYS 160 (371)
Q Consensus 86 -~~~~~~~l~---~~~~~~~~rr~~~~Ti~d~l~~Ryg~~-~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~ 160 (371)
....+.+.. +..+.|..||+|..|++|++|+|||++ .|.+.++..++..+.+++.|+.+.+.+++.++|+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~ 160 (471)
T TIGR02119 81 IQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSYLTA 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 222333222 222334458999999999999999965 678888888889999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccC-CCCCcccccchh
Q psy3961 161 ITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNL-SPDPTTRHSWFT 239 (371)
Q Consensus 161 ~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (371)
+++.++++++||..||+|++++||.+|+++++++.+++....+.+.||+++..++++++++ +..+. .++.....+++
T Consensus 161 iii~~~iv~iYt~~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~- 238 (471)
T TIGR02119 161 LFIFSSSVLIYTTFGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDP-NLITPFGGDGGLTKPFV- 238 (471)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCc-cccCCCCCCcchhhhHH-
Confidence 9999999999999999999999999999999999988888888888999998888776543 22111 11110000000
Q ss_pred hHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccc
Q psy3961 240 LIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGIN 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
.+... ....+..+ .
T Consensus 239 --~~~~~---------------------------------------------------------------~~~~g~~~-~ 252 (471)
T TIGR02119 239 --ASFWI---------------------------------------------------------------LVGIGVIG-L 252 (471)
T ss_pred --HHHHH---------------------------------------------------------------HHHHHHhC-c
Confidence 00000 01111122 3
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3961 320 QMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNC 367 (371)
Q Consensus 320 q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~~ 367 (371)
|+.+||.+++||+|++||+.++++++..++.+...+.|+.++..+|+.
T Consensus 253 p~~~~R~~aak~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~ 300 (471)
T TIGR02119 253 PQTAVRCMSYKDSKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDL 300 (471)
T ss_pred hHHHHHHHhcCCHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 445788888888888888888888877777777888888888877774
No 10
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=100.00 E-value=5e-39 Score=316.98 Aligned_cols=263 Identities=30% Similarity=0.486 Sum_probs=223.0
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCC-c
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGS-A 121 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~-~ 121 (371)
|||++|+++.++|+.||++|+.+++|.+|.+|++|+++.|+.+++.++.++...++.|+.||.+..|++|++++|||+ .
T Consensus 1 agr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 1 AGRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHhCchH
Confidence 799999999999999999999999999999999999999999999989889999999999999999999999999998 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIV 201 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~ 201 (371)
.|.+.++..++..++|++.|+++.+.+++.++|+|++.++++.++++++||.+||+|++++||.+|+++|+++.+++.+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i~~~~~i~~~~~ 160 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVF 160 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHcCCHHHHHHhhhhCCcc-----ccccCCCCCcccccchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhcccc
Q psy3961 202 AAINVGGIGEIWNIAHRNDRL-----EFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPN 276 (371)
Q Consensus 202 ~~~~~gG~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~ 276 (371)
.+.+.||++++.+.+++.++. +.++...++......|.
T Consensus 161 ~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 203 (407)
T TIGR00813 161 AFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWG------------------------------------- 203 (407)
T ss_pred HHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChH-------------------------------------
Confidence 899999999999887765331 11111111110001110
Q ss_pred ccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccchHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 277 VNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFS 356 (371)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (371)
...++......... .||+.+||++++||+|++||+.+++.+...++.....++
T Consensus 204 --------------------------~~~~~~p~~~~~~~-~~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~~l~ 256 (407)
T TIGR00813 204 --------------------------AGVFGLPHVALWYW-TNQVIVQRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLP 256 (407)
T ss_pred --------------------------HHHhChHHHHHHHh-cCHHHhhHHHhcCCHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 01111011112222 799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCC
Q psy3961 357 GLAIYASYHNCDP 369 (371)
Q Consensus 357 G~~~~~~y~~~~p 369 (371)
|+.++..||+++|
T Consensus 257 G~~a~~~~~~~~p 269 (407)
T TIGR00813 257 GLIARALYTDIDP 269 (407)
T ss_pred HHHHHHHhcccCh
Confidence 9999999987554
No 11
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=100.00 E-value=2.7e-39 Score=329.67 Aligned_cols=193 Identities=18% Similarity=0.306 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHH
Q psy3961 10 YAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVL 89 (371)
Q Consensus 10 ~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~ 89 (371)
|+++++|+++++++|+|. |+||.|||++|||++|+|.+++|+.||++|+.+++|.+|.+|++|+++.|+..++.+
T Consensus 2 ~~i~~~y~~~~l~iG~~~-----~~~s~~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~ 76 (552)
T TIGR03648 2 YLFVGATFALYIGIGIWS-----RAGSTSEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTG 76 (552)
T ss_pred eEEehHHHHHHHHHHHhe-----ecCchHHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 567899999999999974 345889999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy3961 90 ATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSA-TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVC 168 (371)
Q Consensus 90 ~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~-~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~ 168 (371)
+..+.+++++|++||.+..|++||+|+|||++ .|.+.++..++..++|++.|+.+.+.+++.++|+|++.++++.++++
T Consensus 77 ~~~~~~~~~~p~~rr~~~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~ 156 (552)
T TIGR03648 77 GYVLLALLLAPYLRKFGKYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIV 156 (552)
T ss_pred HHHHHHHHHHHHHHHCCCccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888899999999999999999999999954 79999999999999999999999999999999999999999999999
Q ss_pred hHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3961 169 LFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG 207 (371)
Q Consensus 169 ~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g 207 (371)
++||.+||+|+|+|||.+|+++++++.+++......+.+
T Consensus 157 ~iYt~~GG~~aV~~TD~iQ~iim~ig~i~~~~~~~~~~~ 195 (552)
T TIGR03648 157 FFYAVLGGMKGVTWTQVAQYIVLIVAYLVPAIFISLKLT 195 (552)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888776655555543
No 12
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-38 Score=292.66 Aligned_cols=292 Identities=21% Similarity=0.290 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHH
Q psy3961 10 YAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVL 89 (371)
Q Consensus 10 ~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~ 89 (371)
.+.++.|+..++++++|...||+|.+-.+||++||||++.++++++..||++|+++|+|-||.+|++|+++.....--..
T Consensus 4 ~~pli~YL~~v~~i~iy~~~k~~k~~fLneYylgnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp 83 (473)
T COG4145 4 ILPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVP 83 (473)
T ss_pred ehhHHHHHHHHHHHHHHHHhhhccccchHHHHhccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHH
Confidence 45688999999999999755555666689999999999999999999999999999999999999999997654433333
Q ss_pred HHHHHHHHHHHHH----HhcCCCcHHHHHHHHhCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy3961 90 ATPIVAHIYLPVF----FKLGAVSVYEYLEKRFGS-ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLV 164 (371)
Q Consensus 90 ~~~l~~~~~~~~~----rr~~~~Ti~d~l~~Ryg~-~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~ 164 (371)
...+...+++||+ ||+|+.|++|++++||.+ ...+++++..+++...++.+|+.+.++++|+..|+|+.+++++.
T Consensus 84 ~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~if 163 (473)
T COG4145 84 TVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIF 163 (473)
T ss_pred HHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHH
Confidence 3333334555654 678999999999999975 57888899888999999999999999999999999999999999
Q ss_pred HHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCccc-ccchhhHHh
Q psy3961 165 GLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTR-HSWFTLIIG 243 (371)
Q Consensus 165 ~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 243 (371)
+..+.+||.+||+|+|+.||.+|+++|+++.++++....+..||.++..+.+.+-++ ++ ..|++.+. ... ....+
T Consensus 164 a~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp-~l--v~P~~~~~~l~~-~Fm~S 239 (473)
T COG4145 164 AVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDP-GL--VTPQGADDILDP-PFMAS 239 (473)
T ss_pred HHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCc-cc--cCCCCCcccccc-hHHHH
Confidence 999999999999999999999999999999999999888999999999999876543 11 12222211 000 00011
Q ss_pred hHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccchHHH
Q psy3961 244 GIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQV 323 (371)
Q Consensus 244 ~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 323 (371)
..+ ....+..+.+| ..
T Consensus 240 fwi---------------------------------------------------------------lv~~gvlglP~-t~ 255 (473)
T COG4145 240 FWI---------------------------------------------------------------LVCFGVLGLPH-TA 255 (473)
T ss_pred HHH---------------------------------------------------------------HHHHHHhcCcH-HH
Confidence 000 12333334444 68
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3961 324 QRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDP 369 (371)
Q Consensus 324 qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~~~p 369 (371)
.|+++.||.|..++++.++...+..+.++.-+.|..+|+..||.+|
T Consensus 256 vr~ia~kDskaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~ 301 (473)
T COG4145 256 VRCIAFKDSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV 301 (473)
T ss_pred HHHHhccchhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc
Confidence 9999999999999999999999999999999999999999999755
No 13
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=100.00 E-value=1.9e-39 Score=319.90 Aligned_cols=313 Identities=25% Similarity=0.321 Sum_probs=214.3
Q ss_pred hhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhC
Q psy3961 40 YLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG 119 (371)
Q Consensus 40 f~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg 119 (371)
|++|||++|++++++|+.+|++|+++++|.+|.+|++|+++.|+.++..++.++..++++||+||.|..|++|++|+|||
T Consensus 1 f~~agr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg 80 (406)
T PF00474_consen 1 FFVAGRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYG 80 (406)
T ss_dssp -----S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-
T ss_pred CeeCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcC
Confidence 78999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred Cch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 120 SAT--RLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 120 ~~~--~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
++. |.+.++..++..++|++.|+++.+.+++.++|+|++.++++.++++++||..||+|++++||.+|+++++++.++
T Consensus 81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~i~~~~~~~ 160 (406)
T PF00474_consen 81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGVIMIIGAIV 160 (406)
T ss_dssp HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT------SHHHHHHHHHHHHHHH
T ss_pred CchhhhhhcccccchhhhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHHHHHHHHHH
Confidence 877 888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccc-cchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhcccc
Q psy3961 198 VIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRH-SWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPN 276 (371)
Q Consensus 198 i~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~ 276 (371)
+.+..+.+.||++++.+.+.+.++......+|+..+.. +.+.. ....+........+|+.+||++++||+|++||+..
T Consensus 161 ~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~p~~~qR~~aak~~~~ar~~~~ 239 (406)
T PF00474_consen 161 VLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFF-LSFWIALMLGTFGAPHFWQRFLAAKSPKTARKGML 239 (406)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGG-GS-TTHHHHSTHHH-HHHHHHHSSSHHHHHHHHHH
T ss_pred hhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhh-HHHHHHHHhhhccchHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999988877654421111222221111 11111 11111112233355999999999999999999998
Q ss_pred ccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHH-HH-------hccchHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q psy3961 277 VNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYC-SL-------YGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTL 348 (371)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~q~~~qr~~~~~~~~~~~~~~~~~~~~~~~ 348 (371)
.+.+...+++... ..+|...... .. ...+++..-..+..+.....-.++...+.+...
T Consensus 240 ~~~~~~~~~~~~~--------------~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~ 305 (406)
T PF00474_consen 240 IAIIFLIIFYFLT--------------IFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAI 305 (406)
T ss_dssp HHHGGGTTHHHHH--------------HHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHH
T ss_pred HHhhhheeeehHH--------------hhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhh
Confidence 8766554443321 1111110011 00 112444455555555555566677766666666
Q ss_pred HHHH----HHHHHHHHHHHhcCC
Q psy3961 349 LSVS----TCFSGLAIYASYHNC 367 (371)
Q Consensus 349 ~~~~----~~~~G~~~~~~y~~~ 367 (371)
+... ........+..|++.
T Consensus 306 ~ST~~s~l~a~ss~~~~Di~~~~ 328 (406)
T PF00474_consen 306 MSTADSLLLAISSIFSRDIYKPF 328 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHhhhhhhhhHHhhhcc
Confidence 5443 345666677777653
No 14
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=5.1e-38 Score=315.25 Aligned_cols=293 Identities=25% Similarity=0.349 Sum_probs=242.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHH
Q psy3961 6 GIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINI 85 (371)
Q Consensus 6 ~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~ 85 (371)
+..+++++.+|++.++.+|+|+ +||++|.|||++|||++|++..++|..++++|+++++|.||.+|.+|+++.|...
T Consensus 2 ~~~~~ii~~iyli~~~~ig~~a---~~~~~~~~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~ 78 (493)
T COG0591 2 MLILLIIFLIYLILMLLIGLYA---YRKTKSLEDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAI 78 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHH---hcccCchHHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHH
Confidence 3468999999999999999986 5566699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHH
Q psy3961 86 SYVLATPIVAHIYLPVFFKL----GAVSVYEYLEKRFG-SATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYS 160 (371)
Q Consensus 86 ~~~~~~~l~~~~~~~~~rr~----~~~Ti~d~l~~Ryg-~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~ 160 (371)
+..++..+...+++||+||. |.+|++||+++||| +..|.+.+++.++..++|++.|+++.+.+++..+|+|+..+
T Consensus 79 ~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~ 158 (493)
T COG0591 79 GLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTG 158 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHH
Confidence 98888888889999999875 49999999999999 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchhh
Q psy3961 161 ITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTL 240 (371)
Q Consensus 161 ~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (371)
+++.++++++||.+||+|++.|||.+|+.+|++++..+.+....+.||+++..+...+.++....+ +++.. ..++..
T Consensus 159 ~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~ 235 (493)
T COG0591 159 ILIGALIVALYTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTH-PFDGA--LSPIYI 235 (493)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccC-ccccc--chHHHH
Confidence 999999999999999999999999999999999999999998888899998888776543211000 01100 111111
Q ss_pred HHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccch
Q psy3961 241 IIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQ 320 (371)
Q Consensus 241 ~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 320 (371)
... .........+...|
T Consensus 236 -~~~--------------------------------------------------------------~~~~~~~l~~~~~~ 252 (493)
T COG0591 236 -ISL--------------------------------------------------------------IAWGTLFLGYFGQP 252 (493)
T ss_pred -HHH--------------------------------------------------------------HHHHHHHhhhhcCc
Confidence 000 00112234445678
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC
Q psy3961 321 MQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVST-CFSGLAIYASYHNC 367 (371)
Q Consensus 321 ~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~~y~~~ 367 (371)
+.+||+++.|++|+.+|....++.+..+..+.. ...|....+.+++.
T Consensus 253 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 300 (493)
T COG0591 253 HILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL 300 (493)
T ss_pred hhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 889999999999998866666666666666555 88888888887654
No 15
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=273.73 Aligned_cols=293 Identities=16% Similarity=0.278 Sum_probs=243.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI 83 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~ 83 (371)
..++..+.++.+|+.+.+.+++|. +||.+|..||++|||+++.+..++.+.++++|+.+|+|.++..+..|..+++|
T Consensus 3 ~~~~~~i~i~~l~v~~~l~i~~~~---~~R~~s~tdyYvAG~~i~~fqNGlAiagdyMSaASflGiag~I~~~GYdG~~Y 79 (529)
T COG4147 3 PVNWQVIGIFVLFVLITLYITYWA---SKRTRSATDYYVAGGRITGFQNGLAIAGDYMSAASFLGIAGLIFISGYDGLIY 79 (529)
T ss_pred CCcceeEehhHHHHHHHHhheeee---ecccccccceeecCCcccccccceehhccccchHhhhchhHhhhhcccchHHH
Confidence 345556677888888999999875 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy3961 84 NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG-SATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSIT 162 (371)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg-~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~ 162 (371)
..|+..++++..++++|++||.+-.|.+|++.+||+ ++.|.++++..++..+.|+..|+.+.|.+++.++|.|++.+++
T Consensus 80 ~iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ 159 (529)
T COG4147 80 SIGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVV 159 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehh
Confidence 999999999999999999999999999999999998 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHhhhhCCccc--cccCCCCCcccccchh
Q psy3961 163 LVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG-GIGEIWNIAHRNDRLE--FFNLSPDPTTRHSWFT 239 (371)
Q Consensus 163 i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g-G~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 239 (371)
+..+++.+|+.+|||++..||.++|.++++.+.++..+....+.| ++.+..+.....++.. ....+|+... .++..
T Consensus 160 ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~-~~~i~ 238 (529)
T COG4147 160 IGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLY-KDPID 238 (529)
T ss_pred hHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcc-cCHHH
Confidence 999999999999999999999999999999999888888887775 4555555444332221 0112222221 12221
Q ss_pred hHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccc
Q psy3961 240 LIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGIN 319 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (371)
. ++..+ .++...+--
T Consensus 239 ~-isl~~----------------------------------------------------------------aLm~GTAgL 253 (529)
T COG4147 239 F-ISLGF----------------------------------------------------------------ALMVGTAGL 253 (529)
T ss_pred H-HHHHH----------------------------------------------------------------HHHHccCCC
Confidence 1 22222 334344456
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3961 320 QMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYH 365 (371)
Q Consensus 320 q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~ 365 (371)
|+.+.|+++.+|.||+|++..++..++..+....-..|..++..-.
T Consensus 254 PHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~ 299 (529)
T COG4147 254 PHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVG 299 (529)
T ss_pred CeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677888888888888888888888888888888888888877653
No 16
>COG4146 Predicted symporter [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=240.42 Aligned_cols=297 Identities=22% Similarity=0.345 Sum_probs=231.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhcCCc--ccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH
Q psy3961 6 GIVDYAVFILMLVISGAIGIYYRFSGGK--QKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI 83 (371)
Q Consensus 6 ~~~~~~i~~~yl~~~l~ig~~~~~~~~~--~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~ 83 (371)
.++.+..+..|-.++..+.|| |.|+ .++++.|++|||+++..+++.|++-|..|+...+|..+.+|+.+++..-|
T Consensus 2 ~~i~i~sFl~~t~~Va~isW~---Ktr~~Dl~ss~GYFLaGR~Lsg~VI~~SlvLTnLSTEQlvGln~~ayk~~~svmaW 78 (571)
T COG4146 2 MSITILSFLGVTLLVAIISWW---KTRGTDLSSSKGYFLAGRSLSGLVIACSLVLTNLSTEQLVGLNGQAYKGNMSVMAW 78 (571)
T ss_pred hhHHHHHHHHHHHHHHheeee---eccCCccccccceEeccCcccchhheehhhhhcccHHHhccccceeccCCeEEEEE
Confidence 355566666676676777775 3333 35678999999999999999999999999999999999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC------Ch
Q psy3961 84 NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQM-VLYMGIALYAPAIALEAVMG------LS 156 (371)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~-~~~~~~q~~~~~~~l~~~~g------i~ 156 (371)
.+...+...+.++.+.||+-|.+..|+|||+|+||+++.|.+.+.+.++.+ +.++...++..+..++.++. ++
T Consensus 79 eVts~i~L~flAl~~lprylK~GitTIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v~~IS 158 (571)
T COG4146 79 EVTSVIPLIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEVLQIS 158 (571)
T ss_pred EecchHHHHHHHHHHHHHHHhcCCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhhhCcC
Confidence 777888888899999999999999999999999999999999999888754 46788889999998887764 44
Q ss_pred h----HHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhhhhCCccccccCCCC
Q psy3961 157 Q----FYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG--GIGEIWNIAHRNDRLEFFNLSPD 230 (371)
Q Consensus 157 ~----~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g--G~~~i~~~~~~~~~~~~~~~~~~ 230 (371)
+ +...+..+++-+.|..+||+|+++.+|.++++.++++-+.+.++++.+.| .+.+=.+.+...+. +.++.-++
T Consensus 159 ~g~~i~~~viaiG~~g~~Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~-eKlNaIGg 237 (571)
T COG4146 159 HGAAIWLLVIAIGLAGILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHA-EKLNAIGG 237 (571)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCH-HHhcccCC
Confidence 3 44555667788899999999999999999999999999999999988864 23222222222221 22233344
Q ss_pred CcccccchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHH
Q psy3961 231 PTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIF 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
+.+..+|-..+-|..+
T Consensus 238 ~~d~vPw~a~fTGll~---------------------------------------------------------------- 253 (571)
T COG4146 238 PTDPVPWGAAFTGLLL---------------------------------------------------------------- 253 (571)
T ss_pred CCCCCcHHHHHHhHhh----------------------------------------------------------------
Confidence 4444444444444444
Q ss_pred HHHHHhccchHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy3961 311 TYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASYHNCDPI 370 (371)
Q Consensus 311 ~~~~~~~~~q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y~~~~p~ 370 (371)
....+++.||..+||.+++||.+|.+||.++++.+...-....+++|++++-.|+|-.|.
T Consensus 254 vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhlygdL~~a 313 (571)
T COG4146 254 VNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHLYGDLPKA 313 (571)
T ss_pred hheeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHHhccCCcc
Confidence 344455567778888888888888888888888888888888889999999999886554
No 17
>KOG3761|consensus
Probab=99.90 E-value=3.1e-25 Score=202.31 Aligned_cols=200 Identities=13% Similarity=0.244 Sum_probs=177.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCcccCc--------chhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhCh-
Q psy3961 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTN--------NEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGT- 78 (371)
Q Consensus 8 ~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~--------~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~- 78 (371)
..++.++.+-++++.+|+|..||.|++++. |+-.++||++|..+.++++.+||.++.-+-|.++..|.-|.
T Consensus 5 ~giiaii~fyllillvgiwa~~kskns~~~e~~agaate~iil~grdig~lvg~ftmtatwvgg~yingtaealy~~gyg 84 (591)
T KOG3761|consen 5 EGIIAIIFFYLLILLVGIWAARKSKNSGEAEEEAGAATEAIILAGRDIGLLVGGFTMTATWVGGAYINGTAEALYNGGYG 84 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCccchhhhccccchhheeccccceeeeeeEEEEEEEecceeeccchhhhccCCcc
Confidence 344555556667788999986655544433 56789999999999999999999999999999999998755
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Q psy3961 79 -QFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQ 157 (371)
Q Consensus 79 -~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~ 157 (371)
.+..-++++++.+++-+++|+++.|+.++.|+-|-+++.||++.+.+.-+-.++.-..|.++.+.++|..++.+.++|.
T Consensus 85 l~~~qapigyaislilggl~fak~mr~egyitmldpfq~~ygkriggll~ipallge~fwaaai~salgatisvii~idm 164 (591)
T KOG3761|consen 85 LAGAQAPIGYAISLILGGLFFAKKMREEGYITMLDPFQHIYGKRIGGLLFIPALLGEMFWAAAIFSALGATISVIIDIDM 164 (591)
T ss_pred cccccCcchhhHHHHhhhhhhcchhhhcCcEEeechHHHHhhhhccceEeeHHHHhHHHHHHHHHHHhcCeEEEEEeccc
Confidence 4555699999999999999999999999999999999999999988888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy3961 158 FYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVG 207 (371)
Q Consensus 158 ~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~g 207 (371)
+.++++.+.+..+||..||+++|++||++|-..+++++.++...++.+.+
T Consensus 165 ~~sv~isa~ia~~yt~~gg~yavaytdvvqlfcifvglwi~vp~al~h~~ 214 (591)
T KOG3761|consen 165 HASVIISACIATFYTFTGGLYAVAYTDVVQLFCIFVGLWICVPAALSHDA 214 (591)
T ss_pred cHhHHHHHHHHHHHhhccceEEEeehhHHHHHHHHhhhheechhhhcCch
Confidence 99999999999999999999999999999999999999999988887753
No 18
>KOG2348|consensus
Probab=99.76 E-value=1.8e-18 Score=163.88 Aligned_cols=202 Identities=17% Similarity=0.274 Sum_probs=165.5
Q ss_pred HHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH-HHHHHHHHHHHHHHHH
Q psy3961 18 VISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF-VVINISYVLATPIVAH 96 (371)
Q Consensus 18 ~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~-~~~~~~~~~~~~l~~~ 96 (371)
++++.+.+...|-.+...++|+|-.|+|+....+++...+++|.+++|++-.++.+|++|.++ .||.-+..+-..++.
T Consensus 24 ~~mi~vt~llKry~~e~~tsE~FtTA~rsVkTGLiasaVVSsWtW~sTlLtSa~~ayqyGV~G~~wYasga~vQIl~Ft- 102 (667)
T KOG2348|consen 24 IVMILVTYLLKRYVGEVQTSEHFTTASRSVKTGLIASAVVSSWTWASTLLTSAGKAYQYGVSGSFWYASGATVQILLFT- 102 (667)
T ss_pred HHHHHHHHHHHHHhccccchhhhcccccccccceehhhhhhhhhhhHHHHhhccchhhhcccchhhhhccchhhhHHHH-
Confidence 344445544311124577899999999999999999999999999999999999999999976 588777766655554
Q ss_pred HHHHHHHhc--CCCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhc
Q psy3961 97 IYLPVFFKL--GAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTI 174 (371)
Q Consensus 97 ~~~~~~rr~--~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~ 174 (371)
+++-..||. |++|.-|..+.|||+..+...-+..+...+...+.-+.+.+..++.++|.+......+.-+-+.+||.+
T Consensus 103 VlAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVtaMLL~gGSavisalTGmn~vAa~FLlPlGVvvYTl~ 182 (667)
T KOG2348|consen 103 VLAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVTAMLLLGGSAVISALTGMNTVAACFLLPLGVVVYTLF 182 (667)
T ss_pred HHHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHHHHHHhCchhhhhhhccchhhhhhheeeeeEEEEEec
Confidence 445444443 899999999999998777766666667788888888999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCHHHHHHhhhhCC
Q psy3961 175 GGIKAVILTDVFQSILMYAAIFAVIIVAA---INVGGIGEIWNIAHRND 220 (371)
Q Consensus 175 GGl~av~~td~iQ~~~~~~~~~vi~~~~~---~~~gG~~~i~~~~~~~~ 220 (371)
||+|+.-.||-.|.++..+.+++.....+ ++.|.++.+++.+.+..
T Consensus 183 GGlKaTFLtdy~HtvIv~iillvf~f~vYtss~~iGSp~kvYDllke~~ 231 (667)
T KOG2348|consen 183 GGLKATFLTDYTHTVIVYIILLVFLFVVYTSSKHIGSPGKVYDLLKEAS 231 (667)
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHhhhcccccCCcHHHHHHHHHHH
Confidence 99999999999999998887777666554 34688999998887653
No 19
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.45 E-value=0.00024 Score=67.91 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=111.0
Q ss_pred CCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhH
Q psy3961 46 NQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLA 125 (371)
Q Consensus 46 ~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~ 125 (371)
+++.......+..+.+|+..+......+.+.| +++...+...+...+..+...+..||++..|..|+.++++||..+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHH
Confidence 35666777777777777766666555555554 43333444444445555666778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHH
Q psy3961 126 ASLAFTVQMVLYMGIALYAPAIALEA-VMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVI 199 (371)
Q Consensus 126 ~~~~~ii~~~~~~~~q~~~~~~~l~~-~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~ 199 (371)
..+...+..+...+..+...+..++. +++-.+...+....++++.|.+.+|+++.+.+..+-..+.++..+.+.
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~ 154 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLIL 154 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888999999999998887 456555666666667888999999999999954444444444444433
No 20
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.44 E-value=1.9e-05 Score=76.73 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=106.0
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchh
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATR 123 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~ 123 (371)
++++.+...+...++.+|++ ++..|+...+.+-...|. .+...+...+.++.+.+..+|++..+..|+.++.+|+..+
T Consensus 1 ~~is~~q~~~l~~~~~iG~g-il~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSG-LLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILG 79 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHH-HHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHH
Confidence 35778888888888888877 566677666544333343 3333444455567777888888778999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHH
Q psy3961 124 LAASLAFTVQMVLYMGIALYAPAIALEAV-MGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAA 194 (371)
Q Consensus 124 ~~~~~~~ii~~~~~~~~q~~~~~~~l~~~-~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~ 194 (371)
.+.++..++......+......+..++.. .+-.+.....+..++++.|...+|.+....+..+=..+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 88888877777667777777777777653 333334444556666778999999999999887776665544
No 21
>PRK11017 codB cytosine permease; Provisional
Probab=98.07 E-value=0.00025 Score=70.05 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=131.2
Q ss_pred ChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCcHHHHHHHHhCCchhh
Q psy3961 48 SLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIY---LPVFFKLGAVSVYEYLEKRFGSATRL 124 (371)
Q Consensus 48 ~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~---~~~~rr~~~~Ti~d~l~~Ryg~~~~~ 124 (371)
+.+-..+...+..+...++...... ..|++.....+...+|..+...+. +..-.|.+ .+.+..-|.-||.+-..
T Consensus 11 ~~~~~~~~~~g~~~~~~~~~~g~~l--~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G-~~~~v~sR~~FG~~Gs~ 87 (404)
T PRK11017 11 GVLSLTMVMLGFTFFSASMWAGGTL--GTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTG-LSTHLLARFSFGEKGSW 87 (404)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-cCHHHHHHHHhchhHHH
Confidence 5555444444444444444332323 246654443344444443332222 22233444 56677888888988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 125 AASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAI 204 (371)
Q Consensus 125 ~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~ 204 (371)
+.+++..+..+.|.++|....+..++..+|++.+...++.+++.++ ...-|.|..-+-+.+-..++.+..+...+....
T Consensus 88 l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~-~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~ 166 (404)
T PRK11017 88 LPSLLLGFTQVGWFGVGVAMFAIPVVKATGLDINLLIVLSGLLMTV-TAYFGISALTILSRIAVPAIALLGGYSVWLAVN 166 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999999999999999999887766655555544 445669998887777666665555554445556
Q ss_pred HcCCHHHHHHhhhhCCccccccCCCCCcccccchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccce
Q psy3961 205 NVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNI 284 (371)
Q Consensus 205 ~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~ 284 (371)
+.||+++..+..+ +. ..+++ ..+....+....+..++..+.|+ +|++|++..+..++.++...
T Consensus 167 ~~~g~~~~~~~~~------------~~--~~~~~-~a~~~~~g~~~~~~~~~~DysRy--~k~~~~~~~~~~lg~~i~~~ 229 (404)
T PRK11017 167 DVGGLDGLKAIVP------------AE--PLDFS-AALTLVVGSFISGGTLTADFVRF--GRSAKIAVLATMVAFFLGNS 229 (404)
T ss_pred ccCchhhhhcCCC------------CC--cccHH-HHHHHHHHHHHHhHhcCCChHhh--ccCccceeehhHHHHHHHHH
Confidence 6677655432111 00 11222 23444455556667778889999 57887776666665444443
Q ss_pred e
Q psy3961 285 F 285 (371)
Q Consensus 285 ~ 285 (371)
+
T Consensus 230 ~ 230 (404)
T PRK11017 230 L 230 (404)
T ss_pred H
Confidence 3
No 22
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.04 E-value=0.0033 Score=61.96 Aligned_cols=150 Identities=13% Similarity=0.033 Sum_probs=95.8
Q ss_pred HHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHH----H-H-HhcCCCcHHHHHHHHhCCchhhH
Q psy3961 52 VAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLP----V-F-FKLGAVSVYEYLEKRFGSATRLA 125 (371)
Q Consensus 52 ~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~----~-~-rr~~~~Ti~d~l~~Ryg~~~~~~ 125 (371)
..+++.+|.+|++. +..|..+.+.|+-. ..++..+++++ .+...+ . . +|....+..|+.++-||+..+.+
T Consensus 8 w~~~l~gt~IGaGi-L~LP~~ag~~G~i~--~li~~l~~~pl-~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 8 WMLGLYGTAIGAGV-LFLPIQAGLGGLWV--LVLMAIIAYPL-TYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhCHHHH--HHHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 34567788888876 45566654444321 12222222222 223233 2 2 23347899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----C--ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHH
Q psy3961 126 ASLAFTVQMVLYMGIALYAPAIALEAVM----G--LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVI 199 (371)
Q Consensus 126 ~~~~~ii~~~~~~~~q~~~~~~~l~~~~----g--i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~ 199 (371)
.++..++.....+.+...+.++.++.+. + .|+.....+..+++..|....|.+.+.+.+.+=...+++....+.
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~ 163 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS 163 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888887788877777765543 3 334434445555556899999999999887776655555555555
Q ss_pred HHHHHH
Q psy3961 200 IVAAIN 205 (371)
Q Consensus 200 ~~~~~~ 205 (371)
.....+
T Consensus 164 ~~lip~ 169 (397)
T TIGR00814 164 LYLIPH 169 (397)
T ss_pred HHHHHH
Confidence 444444
No 23
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.01 E-value=0.0012 Score=65.05 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=101.7
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHH--HHHHHHHHHhcCCC-----cHHHHHHH
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIV--AHIYLPVFFKLGAV-----SVYEYLEK 116 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~--~~~~~~~~rr~~~~-----Ti~d~l~~ 116 (371)
++++++...++..++.+|.+.+.|.+.....-|-++. |..+...+++..- --.++-++||.+.. .+..++++
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 4599999999999999999999999988766666654 4445555554432 23445667754333 24467787
Q ss_pred HhC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHH
Q psy3961 117 RFG-SATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAA 194 (371)
Q Consensus 117 Ryg-~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~ 194 (371)
..+ |....+.+++.+.........|....+..++..+++|++...++. .+...|+..||.|.++..-..=.-+|...
T Consensus 125 gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l-~~l~~~vi~GGik~Ia~v~~~lvP~m~~~ 202 (425)
T TIGR00835 125 GLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSNAFNVPKLVTGIVL-TVLTALIIFGGLKRIAKISSVVVPFMALL 202 (425)
T ss_pred HhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 776 556666666622222334688999999999877798877665555 55567889999999887555444444433
No 24
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.01 E-value=0.0021 Score=62.51 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=84.9
Q ss_pred hHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 70 SAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIAL 149 (371)
Q Consensus 70 ~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l 149 (371)
...+.++|++-+|..+-..+..+++. -.+.|+--....++.|.+++|||++......+...+....+...|+.+.+..+
T Consensus 5 ~~aGA~~Gy~Llw~lll~~~~~~~~q-~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al 83 (358)
T PF01566_consen 5 TQAGAQYGYSLLWVLLLSNLLKYVFQ-EMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIAL 83 (358)
T ss_pred HHhHHHHCHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888886554443333332 33444444456899999999999999999999988999999999999999999
Q ss_pred HHHhCChhHHHHHHHHHHHhHhhh--ccCchhH
Q psy3961 150 EAVMGLSQFYSITLVGLVCLFYST--IGGIKAV 180 (371)
Q Consensus 150 ~~~~gi~~~~~~~i~~~i~~~Yt~--~GGl~av 180 (371)
+.++|+|.+...++.++.+.+... .|+.|-+
T Consensus 84 ~ll~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~ 116 (358)
T PF01566_consen 84 NLLFGIPLWIWVLLVAVIAILLLWLSSGGYRRL 116 (358)
T ss_pred HhhcCCCcHHHHHHHHHHHHHHHHHHhccchHH
Confidence 999999998888888877777766 7776644
No 25
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.90 E-value=0.0038 Score=61.06 Aligned_cols=140 Identities=14% Similarity=0.061 Sum_probs=85.3
Q ss_pred hhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhHHHHHHHHHHH
Q psy3961 58 ASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLAASLAFTVQMV 135 (371)
Q Consensus 58 at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~ 135 (371)
++.+|++ +++.|+...+.|....+. .+...+.....++.+++...|. +..+..|+.++-+||..+.+.++...+...
T Consensus 8 gt~IGaG-Il~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~ 86 (381)
T TIGR00837 8 GTTIGAG-MLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLLFVLY 86 (381)
T ss_pred hhhHhHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 3444444 455566666666543332 2223333344556666766666 467899999999999999988877776666
Q ss_pred HHHHHHHHHHHHHHHHHhC------ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHH
Q psy3961 136 LYMGIALYAPAIALEAVMG------LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVI 199 (371)
Q Consensus 136 ~~~~~q~~~~~~~l~~~~g------i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~ 199 (371)
....+...+.+..++.+++ .|.+... +...+++.|....|.|.+.+.+.+=....+...+++.
T Consensus 87 ~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 87 ILTYAYISGGGSILSRLIGEYFGFPWSARAIV-LIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHccHHHHHHHHHHhcCCCccHHHHH-HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6566666666666665543 3444433 3344456688888888777766665544444443333
No 26
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.85 E-value=0.022 Score=57.09 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=85.0
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCc
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~ 121 (371)
=.|+++.+.+.+-..++.+|++-+++........|-...+..+...+.....++.++..-++. +.-...+|.++.||+.
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g~~ 89 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIGRW 89 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 468999999999999999999988887666666676544322333444455666777766654 3346799999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG 154 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g 154 (371)
...+.+....+......+.+..+.+..++..++
T Consensus 90 ~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (452)
T TIGR01773 90 AGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP 122 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999888888877888888888888887665
No 27
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.84 E-value=0.0079 Score=60.07 Aligned_cols=131 Identities=8% Similarity=0.048 Sum_probs=96.9
Q ss_pred CCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhH
Q psy3961 46 NQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLA 125 (371)
Q Consensus 46 ~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~ 125 (371)
.+||..+. .++..+.+++......+.++|++-+|..+-..+..+++... +-|+-.....+..|..++||+++...+
T Consensus 36 ~lGPG~l~---a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~-~~RlgivTG~~l~~~ir~~~~~~~~~~ 111 (439)
T PRK00701 36 FLGPAFLV---AVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSL-SAKLGIATGRDLAQACRDRYPRPVVWF 111 (439)
T ss_pred HcCcHHHh---hhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-HhHhhhhcCCCHHHHHHHHCCchHHHH
Confidence 34554443 34678999999999999999999988755555444444322 333333456789999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhh--hccCchhH
Q psy3961 126 ASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYS--TIGGIKAV 180 (371)
Q Consensus 126 ~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt--~~GGl~av 180 (371)
..+...+....+...|+.+.+..++.++|+|.+.++++.+..+.++. ..+|.|-.
T Consensus 112 ~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~~y~~~ 168 (439)
T PRK00701 112 LWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPL 168 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence 88888888889999999999999999999999888887776444433 35665543
No 28
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.82 E-value=0.0083 Score=59.12 Aligned_cols=218 Identities=13% Similarity=0.137 Sum_probs=126.9
Q ss_pred HHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhHHH
Q psy3961 50 IPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLAAS 127 (371)
Q Consensus 50 ~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~~~ 127 (371)
+-..+.+++|.+|++ +++.|-.....|+... ...+........-++.+++...|. +..+..|..|+.+|++.+.+..
T Consensus 6 ~~~~~li~GTaIGAG-mLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~ 84 (394)
T PF03222_consen 6 LGGVLLIAGTAIGAG-MLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIG 84 (394)
T ss_pred HHHHHHHHHccHhHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHH
Confidence 334555677887776 5677888888887543 222222223334445566655444 6889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC------ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH---H
Q psy3961 128 LAFTVQMVLYMGIALYAPAIALEAVMG------LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA---V 198 (371)
Q Consensus 128 ~~~ii~~~~~~~~q~~~~~~~l~~~~g------i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v---i 198 (371)
+...+.....+.+...+.+++++..++ .|++.+.++..++......+| .|. .|.++..+...-++. +
T Consensus 85 ~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g-~~~---v~~~n~~lv~~~i~~~~~l 160 (394)
T PF03222_consen 85 ISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFG-TKA---VDRINRVLVFGMIISFIIL 160 (394)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-HHH---HHHHHHHHHHHHHHHHHHH
Confidence 998888888899999999999998875 456777776666665555554 554 455555554433333 3
Q ss_pred HHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhcccccc
Q psy3961 199 IIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVN 278 (371)
Q Consensus 199 ~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~ 278 (371)
......+.. .+++.+ ..++..+....+ ..+...+.++.+...-|... |.+ -+|+|+.||+..+.
T Consensus 161 ~~~~~p~~~-~~~L~~------------~~~~~~~~~~~~-~~lPv~~~Sf~f~~ivPsl~-~~~-~~d~~k~~~ai~~G 224 (394)
T PF03222_consen 161 VVYLIPHWN-PSNLLD------------APPSPSDWSYIL-PALPVLVFSFGFHNIVPSLV-KYL-GGDPKKIRKAIIIG 224 (394)
T ss_pred HHHHhhhcC-HHHhhc------------cccccccHHHHH-HHHHHHHHHHHHHhhhHHHH-HHh-CccHHHHHHHHHHH
Confidence 322222221 122211 001111101111 12233333334333334433 444 47899999999886
Q ss_pred CCccceeeee
Q psy3961 279 NPTSNIFLFC 288 (371)
Q Consensus 279 ~~~~~~~~~~ 288 (371)
..+..++|.+
T Consensus 225 s~i~lv~yl~ 234 (394)
T PF03222_consen 225 SLIPLVMYLL 234 (394)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 29
>TIGR00909 2A0306 amino acid transporter.
Probab=97.73 E-value=0.014 Score=57.97 Aligned_cols=160 Identities=15% Similarity=0.121 Sum_probs=105.5
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLG-AVSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~-~~Ti~d~l~~Ryg~~~ 122 (371)
.|+++.+.......++.++++.+..........|....+..+...+.....++.++..-++.. .-...++.++.+|+..
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 478899888888888888877666544434344554332222223333344566666666553 3467899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C--hhHH-----------HHHHHHHHHhHhhhccCchhHHHHHHH
Q psy3961 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMG---L--SQFY-----------SITLVGLVCLFYSTIGGIKAVILTDVF 186 (371)
Q Consensus 123 ~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g---i--~~~~-----------~~~i~~~i~~~Yt~~GGl~av~~td~i 186 (371)
..+.+...++......+.+..+.+..++.+++ . |... ...+...+...+..+.|.|...+.+.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999988888888888888888887776654 2 2221 122445556667788889998888887
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3961 187 QSILMYAAIFAVIIVAA 203 (371)
Q Consensus 187 Q~~~~~~~~~vi~~~~~ 203 (371)
=..+.+..++++.....
T Consensus 162 ~~~~~i~~l~~~~~~~~ 178 (429)
T TIGR00909 162 LVVLKVAALLLFAALGA 178 (429)
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 77666655544443333
No 30
>PRK10249 phenylalanine transporter; Provisional
Probab=97.68 E-value=0.03 Score=56.35 Aligned_cols=149 Identities=9% Similarity=0.068 Sum_probs=97.2
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~ 122 (371)
.|+++.+.+.+-..+..+|++-+++........|-...+-.+...+...+.+..++..-.+. +.-...+|.+++||+..
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~~~ 99 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFA 99 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 48899999988889999999999987666656676443322222333444455666665554 23468899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHH
Q psy3961 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYA 193 (371)
Q Consensus 123 ~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~ 193 (371)
..+.+....+........+..+.+..++..++ .+.+...++. .+.....-+-|.|.....+.+-.++.+.
T Consensus 100 gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~l~~~lN~~gv~~~~~i~~~~~~ikv~ 170 (458)
T PRK10249 100 GFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAF-FIIINAVNLVNVRLYGETEFWFALIKVL 170 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHH-HHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 99999988888777778888888877776554 3433322222 2222333445677666655544444443
No 31
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.65 E-value=0.023 Score=57.34 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=91.2
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC-C-cHHHHHHHHhCCc
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF-VVINISYVLATPIVAHIYLPVFFKLGA-V-SVYEYLEKRFGSA 121 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~~rr~~~-~-Ti~d~l~~Ryg~~ 121 (371)
|+++.+-.....+++.+|++-+......+...|... .+..+...+.....++.++..-++... . ...+|.++.||+.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 678888888888899999888777555555556543 222233334445566777887777754 3 6899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---Ch-hHH--HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG---LS-QFY--SITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAI 195 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g---i~-~~~--~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~ 195 (371)
...+.+....+................++..++ .+ ... ...+..+..+.+...-|.|.....+.+=.++.++.+
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~l 160 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPL 160 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 888888777655433222333222333333332 11 111 112222223445556678877766666555554444
Q ss_pred HHHHH
Q psy3961 196 FAVII 200 (371)
Q Consensus 196 ~vi~~ 200 (371)
+++.+
T Consensus 161 ~~~ii 165 (468)
T TIGR03810 161 FVFIV 165 (468)
T ss_pred HHHHH
Confidence 44333
No 32
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.012 Score=58.29 Aligned_cols=100 Identities=16% Similarity=0.331 Sum_probs=80.7
Q ss_pred HHHHHHHHh--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHH
Q psy3961 110 VYEYLEKRF--GSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQ 187 (371)
Q Consensus 110 i~d~l~~Ry--g~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ 187 (371)
+|+.+-.|| |.+...+.+++..+..++|.+++....+.......++|.+..+++.++++++-+.+| .|....-+.+-
T Consensus 81 lpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~~ili~g~l~~l~~ifG-~r~l~~l~~~a 159 (442)
T COG1457 81 LPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWAGILIIGVLMTLVTIFG-YRALHKLERIA 159 (442)
T ss_pred CChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHH
Confidence 666777776 788889999999999999999999999886544588999999999998887777665 99999988888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHH
Q psy3961 188 SILMYAAIFAVIIVAAINVGGIG 210 (371)
Q Consensus 188 ~~~~~~~~~vi~~~~~~~~gG~~ 210 (371)
...+........+..+...++.+
T Consensus 160 ~~~~~~lf~~l~~~~~~~~~~~~ 182 (442)
T COG1457 160 VPLLLLLFLYLLALLFRSKGGLD 182 (442)
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 88887777777766666555443
No 33
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.58 E-value=0.014 Score=57.46 Aligned_cols=138 Identities=15% Similarity=0.184 Sum_probs=100.1
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHH--HHHHHHHHHhcC----CC-cHHHHHHH
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIV--AHIYLPVFFKLG----AV-SVYEYLEK 116 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~--~~~~~~~~rr~~----~~-Ti~d~l~~ 116 (371)
++++++...++-.++.+|.+.+.|.+.....-|-+++ |..+...+++..- =-.++-++|+.+ .. .+.-|+++
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~ 96 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEK 96 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHH
Confidence 4889999999999999999999999998888888876 4445555555432 133455677543 22 26678888
Q ss_pred HhCC-chhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHH
Q psy3961 117 RFGS-ATRLAASLAFTVQM-VLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILT 183 (371)
Q Consensus 117 Ryg~-~~~~~~~~~~ii~~-~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~t 183 (371)
..|+ ....+.+++.+... ...-..|....+..++.-+++|++..-++..+ .+..+.+||.|.+...
T Consensus 97 gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~-l~~~vi~GGikrI~~v 164 (416)
T PF01235_consen 97 GLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAI-LVALVIFGGIKRIAKV 164 (416)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHH-HHHHHHHcchhHHHHH
Confidence 8885 56667777644433 23367999999999999999998776555544 4578899999987743
No 34
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.015 Score=57.37 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=100.7
Q ss_pred CChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHH
Q psy3961 47 QSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAA 126 (371)
Q Consensus 47 l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~ 126 (371)
+||..+. ..+.++.+.+....+.+.++|.+-+|..+-..+..++....-+| +-.-...+.+|-.++||+++...+.
T Consensus 20 lGPg~lv---a~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~ar-LgivTG~~laq~ir~~y~~~~~~~~ 95 (416)
T COG1914 20 LGPGFLV---AVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSAR-LGIVTGKGLAEAIRERYLPGLGILL 95 (416)
T ss_pred hCcHHHH---HHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCcHHHHHHHHccchHHHHH
Confidence 4554443 24567777788888888888998887655444444444322222 2222357799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHH
Q psy3961 127 SLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILM 191 (371)
Q Consensus 127 ~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~ 191 (371)
.+...+..+..-.+|..+.+..++.++|+|...+.++.++.+++--..+|. -..|.+-..++
T Consensus 96 ~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~~~---r~~E~~v~~l~ 157 (416)
T COG1914 96 WILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGY---RLLERVVLILG 157 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887776666634 44555544443
No 35
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.54 E-value=0.013 Score=55.30 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=94.5
Q ss_pred HHHHHhhhhhHHHHhhh--hHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHH
Q psy3961 53 AFSLMASFMSAITLMGL--SAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAF 130 (371)
Q Consensus 53 ~~s~~at~~s~~t~~g~--~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ 130 (371)
.+....+.+|++---|- -+..-++|.-+.+-.+-..+-+.+.+......-||.|++.-.|.++.-+|++...+.-+..
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~i 88 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIII 88 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHH
Confidence 33444455555422221 1222345554333333334445555666677778999999999999999998888887877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHH
Q psy3961 131 TVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAA 194 (371)
Q Consensus 131 ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~ 194 (371)
++.++.-..+-+-+.|..+++.+|+|+|.+.++....+.+--..++.++..-.+.+=.=++++.
T Consensus 89 if~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 89 IFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHH
Confidence 7777777777777778899999999999997777777777777776776665444433333333
No 36
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=97.51 E-value=0.073 Score=52.54 Aligned_cols=214 Identities=14% Similarity=0.131 Sum_probs=118.7
Q ss_pred HHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhHHHHH
Q psy3961 52 VAFSLMASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLAASLA 129 (371)
Q Consensus 52 ~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~~~~~ 129 (371)
..+.+.+|.+|++. ++.|-.....|+-.... .+.....+...++.+++...+. +..+..+..|+.+|++.+.+..+.
T Consensus 8 ~~~li~GTaIGAGm-LaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~~~~ 86 (403)
T PRK15132 8 SIFIVAGTTIGAGM-LAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFS 86 (403)
T ss_pred HHHHHHhcchhHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHHHHH
Confidence 45667788888774 55676666666643221 1111111233334455643333 456799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------CChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHH---HHHHHHHH
Q psy3961 130 FTVQMVLYMGIALYAPAIALEAVM------GLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMY---AAIFAVII 200 (371)
Q Consensus 130 ~ii~~~~~~~~q~~~~~~~l~~~~------gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~---~~~~vi~~ 200 (371)
..+....-+.+...+.|.+++..+ ++|.+.+.++..++... ..+-|.|.+ |.++-+++. +..+....
T Consensus 87 y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~-iv~~g~~~v---~~~n~~L~~~~ii~~~~~~~ 162 (403)
T PRK15132 87 MMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGG-VVCVGTSSV---DLFNRFLFSAKIIFLVVMLA 162 (403)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHH-HHhccHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 888888888889999777766554 35666666666666555 555567765 555555443 22222222
Q ss_pred HHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCC
Q psy3961 201 VAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNP 280 (371)
Q Consensus 201 ~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~ 280 (371)
....+.. .+++.+ . +... +. .| ..+...+.++.+...-|... |++ -+|+|+.||....+..
T Consensus 163 ~l~p~~~-~~~L~~------------~-~~~~-~~-~~-~~iPvl~~SFgfh~iIpsl~-~y~-~~~~~~~~k~i~~Gs~ 223 (403)
T PRK15132 163 LMMPHIH-KVNLLT------------L-PLQQ-GL-AL-SAIPVIFTSFGFHGSVPSIV-SYM-GGNIRKLRWVFIIGSA 223 (403)
T ss_pred HHHHhcC-HHHHhc------------C-Cccc-cH-HH-HHHHHHHHHhhCCcccHHHH-HHh-CcCHHHHHHHHHHHHH
Confidence 2222211 122111 0 0000 01 11 12222332333333333333 333 6788999999988765
Q ss_pred ccceeeeee
Q psy3961 281 TSNIFLFCF 289 (371)
Q Consensus 281 ~~~~~~~~~ 289 (371)
+.-++|.+|
T Consensus 224 i~li~yl~W 232 (403)
T PRK15132 224 IPLVAYIFW 232 (403)
T ss_pred HHHHHHHHH
Confidence 555555543
No 37
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.49 E-value=0.14 Score=51.38 Aligned_cols=154 Identities=13% Similarity=0.128 Sum_probs=103.7
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLG-AVSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~-~~Ti~d~l~~Ryg~~~ 122 (371)
+|+++.+.+..-..++.+|++-+++........|-+.++..+...+.....+..++..-.+.. .-...+|.++.+|+..
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~~~ 87 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLA 87 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcHH
Confidence 488999999888889999999888866655666765543333334444455566676666654 4568889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q psy3961 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAV 198 (371)
Q Consensus 123 ~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi 198 (371)
..+.+...++........+..+.+..++..++ .|.+...+ ..++...+.-+-|.|.....+.+-..+.+..++++
T Consensus 88 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ 163 (457)
T PRK10580 88 GYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVL-SVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIM 163 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHH-HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 88888888777766677777777777776654 44433322 23334445555578888777766666555544433
No 38
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.48 E-value=0.018 Score=56.53 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=102.8
Q ss_pred hcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHH-HHHHHHHH--HHHHHHHHHHhcC----CCc-HHHH
Q psy3961 42 FGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINI-SYVLATPI--VAHIYLPVFFKLG----AVS-VYEY 113 (371)
Q Consensus 42 ~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~-~~~~~~~l--~~~~~~~~~rr~~----~~T-i~d~ 113 (371)
-.++.++++...++-.|+.+|+..+.|.+-....-|-++..|.| ...+|+.- .=-.++-++|+.+ +.- +.=|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 44567999999999999999999999999888888888764433 33444332 1134456677543 222 5568
Q ss_pred HHHHhCC-chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHH
Q psy3961 114 LEKRFGS-ATRLAASLAFTVQMV-LYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDV 185 (371)
Q Consensus 114 l~~Ryg~-~~~~~~~~~~ii~~~-~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~ 185 (371)
+||..|. ....+.++..++..- ..-.+|-.+.+..++.-+|+|++..-++.+ +...++.+||.|.+....-
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la-~l~~~VI~GGi~rIa~v~~ 210 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLA-LLVALVIFGGIKRIAKVSS 210 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHH-HHHHHHHHcchHHHHHHHH
Confidence 9999984 566666644444333 378899999999999999999766555554 4558999999999876443
No 39
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=97.48 E-value=0.0089 Score=58.70 Aligned_cols=123 Identities=7% Similarity=0.116 Sum_probs=85.7
Q ss_pred HhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHHHHHH
Q psy3961 57 MASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVL 136 (371)
Q Consensus 57 ~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~ 136 (371)
.++.++.+++......+.++|++-+|..+-..+..+++... +-|+-.....+..|..++||+++.+....+...+..+.
T Consensus 14 a~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~-aaRlg~vTg~~l~~~~r~~~~~~~~~~~~~~~~l~ii~ 92 (390)
T TIGR01197 14 SIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRL-CARLGVVTGLDLAEVCREHYPKVPRITLWILAELAIIA 92 (390)
T ss_pred HHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-HHHheeecCCCHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 35667888888888888999999888655444444433322 22222233467999999999987666555555566677
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHH--HHHHHhHhhhccCchhH
Q psy3961 137 YMGIALYAPAIALEAVMGLSQFYSITL--VGLVCLFYSTIGGIKAV 180 (371)
Q Consensus 137 ~~~~q~~~~~~~l~~~~gi~~~~~~~i--~~~i~~~Yt~~GGl~av 180 (371)
....|..+.+..++.++|+|.+.++++ ...+..++...+|.|-.
T Consensus 93 ~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~ 138 (390)
T TIGR01197 93 TDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRIL 138 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeH
Confidence 888999999999999999998877765 44444445566766543
No 40
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.48 E-value=0.13 Score=51.85 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=93.4
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHhCC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIVAHIYLPVFFKLGA--VSVYEYLEKRFGS 120 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~~rr~~~--~Ti~d~l~~Ryg~ 120 (371)
.|+++.+......+++.+|++.+..........|-... +..+...+...+.++.++..-++... =...+|.++.||+
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~ 85 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGP 85 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccc
Confidence 47899999999999999999866544433333333332 22222333444556777777776643 4588999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ChhHH--HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG----LSQFY--SITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAA 194 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g----i~~~~--~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~ 194 (371)
....+.+....+................++.+++ -+.+. ...+...+...+.-.-|.|.....+.+=..+.++.
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~l~~ 165 (473)
T TIGR00905 86 YIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIP 165 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9888888876654433333333333333444443 11222 12222233455777778998888776655555544
Q ss_pred HHHHHHHH
Q psy3961 195 IFAVIIVA 202 (371)
Q Consensus 195 ~~vi~~~~ 202 (371)
++++.+..
T Consensus 166 l~~~ii~~ 173 (473)
T TIGR00905 166 LFLFIIIG 173 (473)
T ss_pred HHHHHHHH
Confidence 44444333
No 41
>PRK10483 tryptophan permease; Provisional
Probab=97.38 E-value=0.15 Score=50.40 Aligned_cols=220 Identities=11% Similarity=-0.003 Sum_probs=121.1
Q ss_pred HHHHHHhhhhhHHHHhhhhHHHHhhChHHHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHhCCchhhHHHHH
Q psy3961 52 VAFSLMASFMSAITLMGLSAEIVTYGTQFVV-INISYVLATPIVAHIYLPVFFK-LGAVSVYEYLEKRFGSATRLAASLA 129 (371)
Q Consensus 52 ~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~-~~~~~~~~~~l~~~~~~~~~rr-~~~~Ti~d~l~~Ryg~~~~~~~~~~ 129 (371)
..+-+.+|.+|++ .++.|-.....|+.... ..+.....+..-++.+...--+ .+..+....-|+-.|+..+.+..+.
T Consensus 16 ~~~iIaGT~IGaG-MLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~g~~i~~~s 94 (414)
T PRK10483 16 GVVIIGGTIIGAG-MFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGIS 94 (414)
T ss_pred HHHHHHHchHhHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHH
Confidence 3344455666655 56778777777774322 1222222333344555555333 3456777888887899888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----CChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 130 FTVQMVLYMGIALYAPAIALEAVM-----GLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAI 204 (371)
Q Consensus 130 ~ii~~~~~~~~q~~~~~~~l~~~~-----gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~ 204 (371)
..+....-+.+-+.+.|.+++..+ ++|.+.+.++..++....... |.|.|=+.+.+-...+++....+......
T Consensus 95 ~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~~l~~ 173 (414)
T PRK10483 95 IAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAKVITFFLTFGSLLG 173 (414)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666667788889999998887 568888888877777665554 56755554444333333333333322223
Q ss_pred HcCCHHHHHHhhhhCCccccccCCCCCcccccchhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccce
Q psy3961 205 NVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNI 284 (371)
Q Consensus 205 ~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~ 284 (371)
+.. .+++.+...++ +......| ..+...+.++.+...-|.. -|.+. +|+|+.||+..++..+.-+
T Consensus 174 ~i~-~~~L~~~~~~~-----------~~~~~~~~-~alPvl~~SFgfh~iIPsl-~~y~~-~d~~kir~~I~iGs~Iplv 238 (414)
T PRK10483 174 HVQ-PATLFNVAESN-----------ASYAPYLL-MTLPFCLASFGYHGNVPSL-MKYYG-KDPKTIVKCLVYGTLMALA 238 (414)
T ss_pred hcC-HHHHhcccccc-----------chhHHHHH-HHHHHHHhhccCCCcchHH-HHHhC-cCHHHHHHHHHHHHHHHHH
Confidence 321 22222111000 00000111 1223333334444444554 44443 7788999998886655555
Q ss_pred eeee
Q psy3961 285 FLFC 288 (371)
Q Consensus 285 ~~~~ 288 (371)
+|.+
T Consensus 239 ~yl~ 242 (414)
T PRK10483 239 LYTI 242 (414)
T ss_pred HHHH
Confidence 5544
No 42
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.37 E-value=0.16 Score=51.32 Aligned_cols=151 Identities=11% Similarity=0.114 Sum_probs=92.3
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCc
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~ 121 (371)
.|+++.+....-.+++.+|++-+++........|-.+..+ .+...+...+.++.++..-.+. +.-...+|.++.||+.
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g~~ 92 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLGPA 92 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcChH
Confidence 5889999999888999999998887666555666433322 2222223334445556555544 2345889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAI 195 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~ 195 (371)
.....+....+......+.+..+.+..++...+ .+.+...++..+ .....-+-|.|-....+.+-.++.++.+
T Consensus 93 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~in~~gvk~~~~~~~~~~~~ki~~l 166 (471)
T PRK11387 93 TGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCA-LIFGLNVVSTRFFAEGEFWFSLIKVVTI 166 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777666676666666655444 333333332222 2333344466666655544444444333
No 43
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.36 E-value=0.13 Score=50.72 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=117.7
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHH-HHHHHHHHHHHHHHHHHHH-HHhcCCCcHHHHHHHHhCCc
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVV-INISYVLATPIVAHIYLPV-FFKLGAVSVYEYLEKRFGSA 121 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~-~~~~~~~~~~l~~~~~~~~-~rr~~~~Ti~d~l~~Ryg~~ 121 (371)
.|+++...+-+--.+..+|++-|+|........|-+.+. |.++..+.+++. --++.. .++-+..|..||-++-+|+.
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iM-RaLGEm~~~~p~~gSF~~~a~~~lG~~ 90 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIM-RALGEMLVANPVSGSFSDYARKYLGPW 90 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCcHHHHHHHHhcch
Confidence 478888888888889999999999999999999998763 444443332222 233333 34457889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVM-GLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~-gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~ 200 (371)
...+......+..+.-..+|+.+.+..++.-+ ++|.|...++..++...-...+ .|.=--++..-+++.+..++....
T Consensus 91 Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~s-Vk~FGE~EfWfAlIKV~aIi~~Iv 169 (462)
T COG1113 91 AGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLIS-VKVFGELEFWFALIKVAAIIAFIV 169 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887 5888888887777666655443 555556666666666555544444
Q ss_pred H
Q psy3961 201 V 201 (371)
Q Consensus 201 ~ 201 (371)
.
T Consensus 170 ~ 170 (462)
T COG1113 170 V 170 (462)
T ss_pred H
Confidence 3
No 44
>PRK11375 allantoin permease; Provisional
Probab=97.33 E-value=0.022 Score=57.70 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=131.8
Q ss_pred CCCCChHHHHHHHHhhhhhHHHH-hhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCcHHHHHHHHhC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITL-MGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPV---FFKLGAVSVYEYLEKRFG 119 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~-~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~---~rr~~~~Ti~d~l~~Ryg 119 (371)
+|.-+++-.+.--++..++..++ ++.... ..|++.....+...+|..+...+.+.- -.|++ .+-+-.-|.-||
T Consensus 24 ~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l--~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G-l~~~v~sR~sFG 100 (484)
T PRK11375 24 QRTWKTFNYFTLWMGSVHNVPNYVMVGGFF--ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG-VPFAMILRASYG 100 (484)
T ss_pred ccCCcHHHHHHHHHHHhccHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHHHHHHhcccccccC-CChhHhHHHHHc
Confidence 45577777666666666664443 222222 467766555555566655554443322 22333 556778888899
Q ss_pred CchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-----------------CChhH-HHHHHHHHHHhHhhhccCchhH
Q psy3961 120 SATRLAASLAF-TVQMVLYMGIALYAPAIALEAVM-----------------GLSQF-YSITLVGLVCLFYSTIGGIKAV 180 (371)
Q Consensus 120 ~~~~~~~~~~~-ii~~~~~~~~q~~~~~~~l~~~~-----------------gi~~~-~~~~i~~~i~~~Yt~~GGl~av 180 (371)
.+-..+.+++. ++..+.|.++|....+..++.++ |++.. ....+...++.+....-|+|..
T Consensus 101 ~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~~~i 180 (484)
T PRK11375 101 VRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVL 180 (484)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 77656677766 46788999999998888877443 22211 1112222333344466788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchhhHHhhHHHHhhhcccChhhhH
Q psy3961 181 ILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQ 260 (371)
Q Consensus 181 ~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q 260 (371)
-+-+.+-..++++..+.+.+.++.+. |.+++.+..++... .......++. ..+...........+++..+.
T Consensus 181 ~~l~~i~~p~~~i~~~~~~~~~~~~~-g~~~~~~~~~~~~~-------~~~~~~~~~~-~~i~~vig~~~~~~~~~~D~t 251 (484)
T PRK11375 181 NKFTAILNPCIYIVFGGMAIWAISLV-GIGPIFDYIPSGIQ-------KAENSGFLFL-VVINAVVAVWAAPAVSASDFT 251 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhhccCccccc-------CCcchHHHHH-HHHHHHHHHHHHHHccccchh
Confidence 88777777777666666666666666 55555432221100 0011111111 112233333334456788888
Q ss_pred HHhccCChHHhhccccccCCccceee
Q psy3961 261 RYLTMKDYKTAYLRPNVNNPTSNIFL 286 (371)
Q Consensus 261 r~~saks~k~ar~~~~~~~~~~~~~~ 286 (371)
|+ +||+|++.++..++.|+...+.
T Consensus 252 Ry--~k~~~~~~~~~~~g~~i~~~~~ 275 (484)
T PRK11375 252 QN--AHSFRAQALGQTLGLVVAYILF 275 (484)
T ss_pred cc--cCChhhhHHHHHHHHHHHHHHH
Confidence 97 5999999998888777665543
No 45
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.33 E-value=0.22 Score=50.20 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=99.2
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHhCCc
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFK-LGAVSVYEYLEKRFGSA 121 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr-~~~~Ti~d~l~~Ryg~~ 121 (371)
=+|+++.+....-..++.+|++-+++......+.|-+..|......+.....+..++..--. -...+..+|.++.||+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~~ 97 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPW 97 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCcH
Confidence 57889998888888899999999998776666667654332222222333333444444322 23446789999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~ 200 (371)
...+.+....+........+..+.+..++..++ .+.+...++. ++.....-+-|.|-....+.+-..+.+..++++.+
T Consensus 98 ~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~-~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii 176 (469)
T PRK11049 98 AGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAV-VLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIV 176 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988877766666677777777776655 3333322222 22223334446777766665555554444444444
Q ss_pred HHH
Q psy3961 201 VAA 203 (371)
Q Consensus 201 ~~~ 203 (371)
..+
T Consensus 177 ~g~ 179 (469)
T PRK11049 177 VGL 179 (469)
T ss_pred HHH
Confidence 433
No 46
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.32 E-value=0.23 Score=49.93 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=104.8
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCc
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~ 121 (371)
=.|+++.+.+.+--.++.+|++-|++........|-+..|-.+...+.....+..++..-.+. ..-+..+|.++.||+.
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~~ 89 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSF 89 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcH
Confidence 468999999998888999999988887666666665433322223333344445555655544 3456889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
...+.+....+......+.+..+.+..++...+ .+.+...++. .....+.-+-|.|.....+.+-.++.+..+++
T Consensus 90 ~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~-~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~ 165 (456)
T PRK10238 90 AGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVF-FVVINAINLTNVKVFGEMEFWFAIIKVIAVVA 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888888999888888887664 4444433332 33444555567777777666655555544443
No 47
>PRK10655 potE putrescine transporter; Provisional
Probab=97.31 E-value=0.22 Score=49.68 Aligned_cols=155 Identities=10% Similarity=0.095 Sum_probs=86.7
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~ 122 (371)
+|+++.+-.....+++.+|++-+.. |+...+.|-...+..+...+...+.++.++..-.+. +.-...+|.++.||+..
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~-p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIML-PTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSG 83 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcch
Confidence 4678888888888888888887765 444455566444322333334444456666654443 33456899999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--hH-HHH-HHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q psy3961 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMGLS--QF-YSI-TLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAV 198 (371)
Q Consensus 123 ~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~--~~-~~~-~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi 198 (371)
+.+.+....+....-......+....+..+++.+ .. ..+ .+..+....+.-+.|.|-....+.+-....++.++++
T Consensus 84 gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~ 163 (438)
T PRK10655 84 NFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGL 163 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877655444322222233333444555532 11 111 1222233444556677776666555444444444333
Q ss_pred H
Q psy3961 199 I 199 (371)
Q Consensus 199 ~ 199 (371)
.
T Consensus 164 ~ 164 (438)
T PRK10655 164 S 164 (438)
T ss_pred H
Confidence 3
No 48
>PRK10746 putative transport protein YifK; Provisional
Probab=97.24 E-value=0.16 Score=51.15 Aligned_cols=149 Identities=7% Similarity=0.064 Sum_probs=97.5
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCc
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVV-INISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~-~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~ 121 (371)
.|+++.+.+.+--.++.+|++-+++........|-+..+ |.++ .+........++..-.+. ..-+..+|.++-+|+.
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~-g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~~ 87 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIA-GLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPF 87 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcH
Confidence 488999999999999999999999987777777765432 2222 223233444555555444 3446889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAA 194 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~ 194 (371)
.....+....+..+.....|..+.+..++..++ .+.+....+. .+.+...-+-|.|-....+..-..+.+..
T Consensus 88 ~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~-~~~~~~lN~~gv~~~~~~e~~~~~~ki~~ 160 (461)
T PRK10746 88 FGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIA-VALVALANLAAVRLYGEIEFWFAMIKVTT 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999988888877788888888888887655 4544333332 22233334445555555444434443333
No 49
>PRK10484 putative transporter; Provisional
Probab=97.18 E-value=0.00038 Score=71.19 Aligned_cols=33 Identities=21% Similarity=0.054 Sum_probs=28.3
Q ss_pred HhhhcccChhhhHHHhccCChHHhhccccccCC
Q psy3961 248 YCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNP 280 (371)
Q Consensus 248 ~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~ 280 (371)
.+++++.+|+++||++++||+|++||+..++..
T Consensus 253 ~~~~~~~~q~~~qR~~aak~~k~a~~~~~~~~~ 285 (523)
T PRK10484 253 NLFYWCTNQSIVQRALGAKNLAEGQKGALLAAF 285 (523)
T ss_pred HHHHHhCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345667899999999999999999999988643
No 50
>PRK09664 tryptophan permease TnaB; Provisional
Probab=97.18 E-value=0.29 Score=48.39 Aligned_cols=140 Identities=7% Similarity=-0.034 Sum_probs=88.3
Q ss_pred HHHHHHhhhhhHHHHhhhhHHHHhhChHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhHHHHH
Q psy3961 52 VAFSLMASFMSAITLMGLSAEIVTYGTQFVV-INISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLAASLA 129 (371)
Q Consensus 52 ~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~-~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~~~~~ 129 (371)
..+-+.+|.+|++ .++.|-.....|+.... ..+...+.+..-++.+...-.+. +..+....-|+-.|++.+.+.++.
T Consensus 14 g~~iIaGT~IGAG-MLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~i~~~~ 92 (415)
T PRK09664 14 GVMVIAGTVIGGG-MFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGIT 92 (415)
T ss_pred hhHHhhhccHhHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHHHHHHH
Confidence 4445566777665 56778777777774322 12222333334445556654444 456677777777799888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh------CChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHH
Q psy3961 130 FTVQMVLYMGIALYAPAIALEAVM------GLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYA 193 (371)
Q Consensus 130 ~ii~~~~~~~~q~~~~~~~l~~~~------gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~ 193 (371)
..+....-+.+-+.+.|.+++..+ ++|.+.+.++.+++.......| .|.|=+-+.+=...+++
T Consensus 93 ~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~l~~~~ii 161 (415)
T PRK09664 93 VAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS-SLAASRITSLFLGLKII 161 (415)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHH
Confidence 877777778888999999998876 3567766666666555555554 46655544443333333
No 51
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.16 E-value=0.32 Score=48.55 Aligned_cols=145 Identities=10% Similarity=0.010 Sum_probs=84.8
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCc
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~ 121 (371)
.|+++.+-.....++..++ +.+.+.+......|..+. +..+...+.....++.++..-.+. +.-...+|.++.||+.
T Consensus 6 ~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G~~ 84 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFGPW 84 (442)
T ss_pred hccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCcH
Confidence 4677777776666665554 333443333334455332 222222223334445666665554 3456889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSI 189 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~ 189 (371)
...+.+....+......+.+..+.+..++..++........+.......+.-.-|.|...+.+.+-.+
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 85 GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTA 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999888888877777888888888888777633222222222333334444466666665544333
No 52
>PRK10836 lysine transporter; Provisional
Probab=97.12 E-value=0.064 Score=54.41 Aligned_cols=154 Identities=8% Similarity=0.027 Sum_probs=92.8
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH-HHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCC
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF-VVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGS 120 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~ 120 (371)
=.|+++.+-...-.+++.+|++-|++........|-.+ .+-.+...+.....++.++..-.+. +.-...+|.++-+|+
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~g~ 92 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEE 92 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHcCh
Confidence 35889999999999999999999999777777777643 3322223334445556666665554 344566777777777
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
..+.+.+....+......+.+..+....++..++ .|.+.. ....++.+...-+=|.|.....+.+..+..+..++.
T Consensus 93 ~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~ 169 (489)
T PRK10836 93 GFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIW-SALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIV 169 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHH-HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 7777777766665555555666666665655443 333222 222222233344446776666666555554444433
No 53
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.10 E-value=0.39 Score=48.43 Aligned_cols=147 Identities=11% Similarity=0.070 Sum_probs=93.5
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH-HHHHHHHHHHHHHHHHHHHHHHHhcC-CC-cHHHHHHHHhCCc
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF-VVINISYVLATPIVAHIYLPVFFKLG-AV-SVYEYLEKRFGSA 121 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~~rr~~-~~-Ti~d~l~~Ryg~~ 121 (371)
|+++.+.+..--.++.+|++-+.+........|-.+ .+..+...+.....+..++..-++.. .- ...+|.++.+|+.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~ 81 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPA 81 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcH
Confidence 778888888888888999888888776666666433 33222233344445556666666554 22 4678999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMY 192 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~ 192 (371)
...+++....+..+...+.+..+.+..++...+ .+.+....+. .+.....-.-|.|.....+.+-..+.+
T Consensus 82 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~in~~gv~~~~~~~~~~~~~ki 152 (478)
T TIGR00913 82 FGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIF-YVFIVIINLFGVKGYGEAEFWFSSIKI 152 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 999999988888888888888888888876543 3333322222 222223334456655555444343333
No 54
>PRK15049 L-asparagine permease; Provisional
Probab=97.09 E-value=0.42 Score=48.66 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=93.6
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~ 122 (371)
.|+++.+.+.+-..++.+|++-|++........|-+...-.+...+...+.+..++..-.+. +.-+..+|.++.+|+..
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~~~ 106 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGEKA 106 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcHh
Confidence 57799999988889999999999998877777776544322222333334445556555554 34578999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-CChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 123 RLAASLAFTVQMVLYMGIALYAPAIALEAV--M-GLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 123 ~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~--~-gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
..+.+....+........+..+.+..+... + +.|.+...++..++..+ .-+-|.|.....+.+=.++.++.++.
T Consensus 107 gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-iN~~gvk~~~~i~~~~~~iki~~l~~ 183 (499)
T PRK15049 107 AYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGT-MNMIGVKWFAEMEFWFALIKVLAIVT 183 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888877776655666666666666533 2 24544433333222222 22334555555444434333333333
No 55
>PRK11021 putative transporter; Provisional
Probab=97.06 E-value=0.37 Score=47.58 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=80.1
Q ss_pred CChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhH
Q psy3961 47 QSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLA 125 (371)
Q Consensus 47 l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~ 125 (371)
++.+....-..++.+|++.|..........|-...|-.+...+.....++.++..-++. +.-...+|.++.||++....
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 35666677788889999988886655555565444333333444555566777666554 34468899999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHH--HHHHHHHHHhHhhhccCchhHHHHHH
Q psy3961 126 ASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFY--SITLVGLVCLFYSTIGGIKAVILTDV 185 (371)
Q Consensus 126 ~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~--~~~i~~~i~~~Yt~~GGl~av~~td~ 185 (371)
.+....+................++..++.+.+. ...+...+...+.-.-|.|.....+.
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8877665443333333333444555566654322 22222222233334445555554443
No 56
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.06 E-value=0.28 Score=50.63 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=100.7
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHh-hChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHhCCc
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVT-YGTQFVVINISYVLATPIVAHIYLPVFFKLG-AVSVYEYLEKRFGSA 121 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~-~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~-~~Ti~d~l~~Ryg~~ 121 (371)
.|+++.+-....-++..+|++.++-....+.+ .|-+..+..+...+...+.++.++..-.+.. .=+...|.++.+|+.
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~ 106 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGEL 106 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcH
Confidence 68899999998888888998888765554443 5655443333334445556677777666653 346778889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------h----hHHHHHHHHHHHhHhhhccCchhHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGL--------------S----QFYSITLVGLVCLFYSTIGGIKAVILT 183 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi--------------~----~~~~~~i~~~i~~~Yt~~GGl~av~~t 183 (371)
...+.+...++......+....+.+..++.+++. + ......+..++.+.....-|.|...+.
T Consensus 107 ~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v 186 (557)
T TIGR00906 107 WAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWV 186 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHH
Confidence 8888888888877776766666666555544321 1 001112222233334556788888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3961 184 DVFQSILMYAAIFAVIIVAAI 204 (371)
Q Consensus 184 d~iQ~~~~~~~~~vi~~~~~~ 204 (371)
+.+=..+.+..++++.+.++.
T Consensus 187 ~~i~~~iki~~l~~~iv~g~~ 207 (557)
T TIGR00906 187 NKIFTAINILVLLFVIIAGFT 207 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHh
Confidence 666665555544444444433
No 57
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.96 E-value=0.49 Score=47.28 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=85.0
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCc
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~ 121 (371)
-+|+++.+-.....+++.+|++-+..... ..+.|-...|..+...+.....++.++..-.+. +.-...+|.+++||+.
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~-~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 45789999888888899999998887544 444454433322223334445566677666655 3347889999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--hHH-HH-HHHHHHHhHhhhccCchhHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLS--QFY-SI-TLVGLVCLFYSTIGGIKAVILTDVFQSILMYA 193 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~--~~~-~~-~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~ 193 (371)
...+.+....+.................+.+++.. ++. .+ .+..+....+.-.-|.|.....+.+=..+.++
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i 160 (445)
T PRK10644 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI 160 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 88877776665443322332323333444444421 222 11 12222233344445666666655544444433
No 58
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.92 E-value=0.41 Score=47.93 Aligned_cols=227 Identities=15% Similarity=0.170 Sum_probs=142.7
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcHHHHHHHHhC
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLP---VFFKLGAVSVYEYLEKRFG 119 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~---~~rr~~~~Ti~d~l~~Ryg 119 (371)
.+|.-+++-.+.--.+...+..+.+- .+...+.|++.....+...+|..+...++.- .-.|+ ...-|...|.-||
T Consensus 37 ~~rtWg~~~~~~~W~~~~~nv~~~~~-aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~-gIpFpv~~RaSFG 114 (497)
T COG1953 37 EQRTWGWWNYFALWLGMVHNVPTYML-AAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKY-GIPFPVLSRASFG 114 (497)
T ss_pred ccCcchHHHHHHHHHHhhccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCccccc-CCCchHHHHHHHh
Confidence 35666776666555555555554443 3344557887665545555555554433221 11122 3567888888898
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C---h-----------hHHHHHHHHHHHhHhhhccCchhHH
Q psy3961 120 SATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG----L---S-----------QFYSITLVGLVCLFYSTIGGIKAVI 181 (371)
Q Consensus 120 ~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g----i---~-----------~~~~~~i~~~i~~~Yt~~GGl~av~ 181 (371)
-....+-.++=.+.-+.|.++|....|..++.+++ - + ......+..=+.-+....-|++.+=
T Consensus 115 i~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir 194 (497)
T COG1953 115 IYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIR 194 (497)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66555555666667778999999999999887753 1 1 1122223333344678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchhhH--HhhHHHHhhhcccChhhh
Q psy3961 182 LTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLI--IGGIFTYCSLYGINQMQV 259 (371)
Q Consensus 182 ~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~ 259 (371)
+-..+.+.+..+.+..+.+.+..+.||.+.+.+.- . ...+.+..+|... +...........+|+..+
T Consensus 195 ~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p-~----------~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DF 263 (497)
T COG1953 195 KFETWAGPLVYIAMLGLAIWALVKAGGSSILGELP-A----------GTVSGSNSSWAFLAGIAAWVGFWATLALNIPDF 263 (497)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCC-C----------CCCCcchhHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 99999999999999998988899988844332221 0 0011112233332 222334445566899899
Q ss_pred HHHhccCChHHhhccccccCCccce
Q psy3961 260 QRYLTMKDYKTAYLRPNVNNPTSNI 284 (371)
Q Consensus 260 qr~~saks~k~ar~~~~~~~~~~~~ 284 (371)
.|+ +||+|+.+++..+.+|+...
T Consensus 264 sRf--a~s~~~~~~gq~~gLPv~~~ 286 (497)
T COG1953 264 TRF--AKSQKAQIWGQLVGLPVNFA 286 (497)
T ss_pred hcc--cCChhhhhhccchhhhHHHH
Confidence 997 69999999998888876543
No 59
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=96.89 E-value=0.54 Score=46.68 Aligned_cols=150 Identities=15% Similarity=0.137 Sum_probs=97.9
Q ss_pred HHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHhCCchhhHHH
Q psy3961 51 PVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFKLGA--VSVYEYLEKRFGSATRLAAS 127 (371)
Q Consensus 51 ~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr~~~--~Ti~d~l~~Ryg~~~~~~~~ 127 (371)
-..+.+..|.+|++.+ ..|=..-..|+..... .+..........+.+.+...+.+. .+..|..|+.+|++.|.+..
T Consensus 13 ~~vl~l~gT~IGAGvL-~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~ 91 (415)
T COG0814 13 GGVLILAGTAIGAGVL-FLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIG 91 (415)
T ss_pred HHHHHHHccccccchh-hhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHH
Confidence 4566778888888754 4454444455533221 122222333444555666656544 48999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-------ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3961 128 LAFTVQMVLYMGIALYAPAIALEAVMG-------LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 128 ~~~ii~~~~~~~~q~~~~~~~l~~~~g-------i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~ 200 (371)
+...+...+...+-..+.+..++..++ .+++...++...+... ..+-|-+++-. +...+....++.+..
T Consensus 92 ~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~-l~~~~~~~~lk---~ts~l~~~~v~~~~~ 167 (415)
T COG0814 92 LSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAF-LSWLGTLAVLK---ITSLLVFGKVIYLVL 167 (415)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHH-HHHhchhHHHH---HHHHHHHHHHHHHHH
Confidence 999999999999999999999998776 5777777777777666 55555665544 444444433333333
Q ss_pred HHHHH
Q psy3961 201 VAAIN 205 (371)
Q Consensus 201 ~~~~~ 205 (371)
.....
T Consensus 168 l~~~~ 172 (415)
T COG0814 168 LVVYL 172 (415)
T ss_pred HHHHH
Confidence 33333
No 60
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.79 E-value=0.68 Score=46.36 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCcHHHHHHHHhCC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYL---PVFFKLGAVSVYEYLEKRFGS 120 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~---~~~rr~~~~Ti~d~l~~Ryg~ 120 (371)
+|+-+++-.+.--++..++..++.-- +.....|++..+-.+...++..+.....+ ..-.|.+ .+.+..-|..||.
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~G-a~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G-l~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIG-ALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG-LPFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC-CCcchhhhhhhhh
Confidence 35556666666555555554444322 22234566554444444444443332222 3334555 5556678888998
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCC----h------hHHHHHHHHHHHhHhhhccCchhHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAV----MGL----S------QFYSITLVGLVCLFYSTIGGIKAVILTDVF 186 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~----~gi----~------~~~~~~i~~~i~~~Yt~~GGl~av~~td~i 186 (371)
+-..+.+++..+..+.|.++|....+..++.+ +|- + ...+.++...+.+.-+..+|.|.....+..
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~ 168 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWL 168 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 87788899999999999999998887665444 332 2 234455555666666789999988877766
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHH
Q psy3961 187 QSILMYAAIFAVIIVAAINVGGIG 210 (371)
Q Consensus 187 Q~~~~~~~~~vi~~~~~~~~gG~~ 210 (371)
-.....+...+..+ ...+.+|..
T Consensus 169 a~~~~~~~~~~~~~-~~~~~~g~~ 191 (442)
T TIGR00800 169 AVVPPFAAFGMLIW-ALSKAHGKG 191 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHcCCCC
Confidence 55554444444333 344444433
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.72 E-value=0.13 Score=50.73 Aligned_cols=31 Identities=29% Similarity=0.179 Sum_probs=26.7
Q ss_pred cChhhhHHHhccCChHHhhccccccCCccce
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNNPTSNI 284 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~~~~~~ 284 (371)
.+|+++||++++||+|++||+..++.....+
T Consensus 218 ~~~~~~qR~~a~ks~~~~r~~~~~~~~~~~~ 248 (407)
T TIGR00813 218 TNQVIVQRCLAAKSAKHAKKGCLISGVLKLL 248 (407)
T ss_pred cCHHHhhHHHhcCCHHHHHHhHHHHHHHHHH
Confidence 7999999999999999999999887554433
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.70 E-value=0.059 Score=52.97 Aligned_cols=165 Identities=15% Similarity=0.227 Sum_probs=106.7
Q ss_pred hcCCCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Ch-hHHHHHHHHHHHhHhhhccCch
Q psy3961 104 KLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG----LS-QFYSITLVGLVCLFYSTIGGIK 178 (371)
Q Consensus 104 r~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g----i~-~~~~~~i~~~i~~~Yt~~GGl~ 178 (371)
|.+ .+.+-.-|..||.+-..+.+++..+..+.|.++|....+..++.+.+ .+ ....+++.++ +.+.+..-|.|
T Consensus 55 ~~G-l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~-l~~~~~~~G~~ 132 (386)
T TIGR02358 55 DTG-LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGI-LVTLWLLSGPL 132 (386)
T ss_pred ccC-cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH-HHHHHHHHHHH
Confidence 444 56677778888988888999999999999999999999998887764 22 3334444333 44555667999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchhhHHhhHHHHhhhcccChhh
Q psy3961 179 AVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQ 258 (371)
Q Consensus 179 av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 258 (371)
...+.+.+-..++.+..+........+.+ .++.. +. +++ .++.. .+.........+...+..
T Consensus 133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~----~~---------~~~---~s~~~-~~~~~~~~~~swa~~~~D 194 (386)
T TIGR02358 133 AFVWLNNWSVWLLLIATLWLLVVVFSKAD-LSELW----NR---------AGD---MSFAV-AVELVIAMPLSWLPLIAD 194 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhhc----CC---------CCC---ccHHH-HHHHHHHHHHHHHHHccc
Confidence 99999988888877777666655555543 22111 00 111 22221 122233333445555677
Q ss_pred hHHHhccCChHHhhccccccCCccceeeeeec
Q psy3961 259 VQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFS 290 (371)
Q Consensus 259 ~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~ 290 (371)
+.|+ +|++|++.++..+..++...+....+
T Consensus 195 ysRy--~k~~~~~~~~~~~G~~i~~~~~~~~G 224 (386)
T TIGR02358 195 YTRF--ARNPRHVFLGTVLGYFIGSCWMYFLG 224 (386)
T ss_pred hhhh--cCCCcceehHHHHHHHHHHHHHHHHH
Confidence 8888 68889888888877666665555544
No 63
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.43 E-value=1.2 Score=44.64 Aligned_cols=139 Identities=15% Similarity=0.137 Sum_probs=83.8
Q ss_pred hhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhHHHHHHHHHHHH
Q psy3961 58 ASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLAASLAFTVQMVL 136 (371)
Q Consensus 58 at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~ 136 (371)
++.+|++-|++......+.|-+..+..+...+...+.++.++..-.+. +.-...+|.++.||+......+....+..+.
T Consensus 5 g~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~ 84 (446)
T PRK10197 5 AGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVL 84 (446)
T ss_pred cchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 567888888886555566676544322223333444456666665554 3447899999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 137 YMGIALYAPAIALEAVMG-LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 137 ~~~~q~~~~~~~l~~~~g-i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
....+..+.+..++...+ .+.+...++...+. ...-+-|.|.....+.+-.++.++.+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~lN~~gv~~~~~i~~~~~~~ki~~li~ 145 (446)
T PRK10197 85 VIPLEANIAAMILHSWVPGIPIWLFSLVITLAL-TGSNLLSVKNYGEFEFWLALCKVIAILA 145 (446)
T ss_pred HHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH-HHHHHHhhHHHhhhHHHHHHHHHHHHHH
Confidence 777787777777665543 33333222222222 2222335666555554444444443333
No 64
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.40 E-value=1.2 Score=44.39 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~ 122 (371)
+|+++.+-...-..++.+|++-+.- |+...+.|-...+..+...++....++.++..-.+. +.-...+|.++ +|+..
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~l-p~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALL-PANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcHH
Confidence 5789999888888999999988865 444556666554433434445666667777766655 23367888887 99988
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Q psy3961 123 RLAASLAFTVQM-VLYMGIALYAPAIALEAVMG 154 (371)
Q Consensus 123 ~~~~~~~~ii~~-~~~~~~q~~~~~~~l~~~~g 154 (371)
....+....+.. +...+.+....+. +..+++
T Consensus 82 gf~~gw~~~~~~~~~~~~~~~~~~~y-~~~~~p 113 (435)
T PRK10435 82 GFQTGVLYYHANWIGNLAIGITAVSY-LSTFFP 113 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcc
Confidence 877777655422 3344444444443 334443
No 65
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.39 E-value=0.7 Score=45.68 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=79.5
Q ss_pred hHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhHH
Q psy3961 49 LIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLAA 126 (371)
Q Consensus 49 ~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~~ 126 (371)
++-......++..++..+.. + .....|.... |+.++..+.....++.+++.-++. +.-...++.++-+|++.+.+.
T Consensus 3 ~~~~~~l~~~~~~g~gi~~~-~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~~ 80 (426)
T PF13520_consen 3 LFSAIALVIGSIIGSGIFFS-P-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFIV 80 (426)
T ss_dssp HHHHHHHHHHCHHTTTTTTH-H-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-H-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhcc
Confidence 33344444445555444333 2 3334555443 444444433345556666665543 566789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----hHHHH--HHHHHHHhHhhhccCchhHHHHHHHHHHHHH
Q psy3961 127 SLAFTVQMVLYMGIALYAPAIALEAVMGLS----QFYSI--TLVGLVCLFYSTIGGIKAVILTDVFQSILMY 192 (371)
Q Consensus 127 ~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~----~~~~~--~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~ 192 (371)
+....+......+......+..+...++-+ .+... .+..++...-..+-|.|.+.+...+=.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 81 GWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 998888888777666666666555554422 11222 2222333334445567777665555555544
No 66
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.36 E-value=0.4 Score=47.82 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=86.9
Q ss_pred CCCChHHHHHHHHhhhhhHHHH-hhhhHHHHhhChHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCcHHHHHHHHhCC
Q psy3961 45 RNQSLIPVAFSLMASFMSAITL-MGLSAEIVTYGTQFVVINISYVLATPIVAHI---YLPVFFKLGAVSVYEYLEKRFGS 120 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~-~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~---~~~~~rr~~~~Ti~d~l~~Ryg~ 120 (371)
|+-+++-.+.--++..++..++ +|... ...|++.....+...++..+.... .+..-.|++ .+....-|.-||.
T Consensus 7 R~~~~~~~~~iW~~~~~~~~~~~~G~~~--~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G-l~~~v~sR~~FG~ 83 (440)
T PF02133_consen 7 RTWSPWSLFWIWFGANISIATFVTGALG--VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTG-LPTMVLSRASFGY 83 (440)
T ss_dssp --B-HHHHHHHHCHHH-SCHHH-HHHHH--HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----HHHHTTTTS-T
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHH--HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccC-CCchhcchhccCc
Confidence 4555665665556666665554 33332 445666544333333333333222 223334555 3444455555688
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh----------------HHHHHHHHHHHhHhhhccCchhHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQ----------------FYSITLVGLVCLFYSTIGGIKAVILTD 184 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~----------------~~~~~i~~~i~~~Yt~~GGl~av~~td 184 (371)
+-..+.+++..+..+.|.++|..-.+..++.+++... .....+...++..+....|++.+..-.
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~~~~ 163 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALRRLA 163 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHHhHH
Confidence 8888999998999999999999999999887765221 111112223444566778888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Q psy3961 185 VFQSILMYAAIFAVIIVAAINVGG 208 (371)
Q Consensus 185 ~iQ~~~~~~~~~vi~~~~~~~~gG 208 (371)
.+-..++....+........+.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~ 187 (440)
T PF02133_consen 164 VIAAPILLVVFIGMLIWALSKAGG 187 (440)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHCT-
T ss_pred hhhhHHHHhhhhheeEEEeecCCc
Confidence 655555444444444444555544
No 67
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.12 E-value=1.7 Score=43.39 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=80.6
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHH-HhhChHH-HHH-HHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEI-VTYGTQF-VVI-NISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFG 119 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~-y~~G~~~-~~~-~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg 119 (371)
.|+++.+-...-.+++.++++.+.. ++.. ...|-.+ .+. .+...+.....++.++..-++. +.-....|.++.||
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~-~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~g 85 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVS-VGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS 85 (445)
T ss_pred cccccHHHHHHHHHHhheechhccc-hHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhcC
Confidence 5788988887777777777665554 4443 3345432 222 1222233445556666655544 23456678999999
Q ss_pred CchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhh--ccCchhHHHHHHHHHHHHHHHH
Q psy3961 120 SATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYST--IGGIKAVILTDVFQSILMYAAI 195 (371)
Q Consensus 120 ~~~~~~~~~~~ii-~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~--~GGl~av~~td~iQ~~~~~~~~ 195 (371)
+....+.+..... ......+.+..+.+..++..++.+......+...+..+.+. .-|.|.....+.+=.++.++.+
T Consensus 86 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l 164 (445)
T PRK11357 86 RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPF 164 (445)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9887777775443 23334455556666666666666554333333333333333 2344444443333333333333
No 68
>KOG2349|consensus
Probab=95.95 E-value=0.0019 Score=65.54 Aligned_cols=42 Identities=31% Similarity=0.440 Sum_probs=36.0
Q ss_pred hhcccChhhhHHHhccCChHHhhccccccCCccceeeeeecc
Q psy3961 250 SLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSL 291 (371)
Q Consensus 250 ~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~ 291 (371)
.++++||..+||++|.||.|+||+++.+..+...+.++..++
T Consensus 251 ~~~~vnQ~~VQR~lsl~slk~ak~~~~~~~~~~~l~~~~~~~ 292 (585)
T KOG2349|consen 251 SYYGVNQLIVQRYLSLPSLKHAKPSLLLFGYGVLLIMFIMVF 292 (585)
T ss_pred HHHhhhHHHHhHHhccccHHHhhhhhhhhhhHHHHHHHhhcc
Confidence 578999999999999999999999999998877766555444
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=95.90 E-value=0.0075 Score=61.18 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=23.2
Q ss_pred cChhhhHHHhccCChHHhhccccccC
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNN 279 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~ 279 (371)
.+|+++||++++||+|++||+..++.
T Consensus 246 ~~p~~~qR~~aaks~k~~~~~~~~~~ 271 (487)
T TIGR02121 246 GQPHIIVRFMAIRSHKELPKARRIGM 271 (487)
T ss_pred cchHHHHHHHhcCCHHHHHHHHHHHH
Confidence 47899999999999999999987764
No 70
>PRK09928 choline transport protein BetT; Provisional
Probab=95.86 E-value=2.4 Score=44.41 Aligned_cols=188 Identities=14% Similarity=0.204 Sum_probs=91.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCc---ccCcchhhhcCCCCChHHHHHHHHhhhhhHHHH-hhhhHHHHhh---
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGK---QKTNNEYLFGNRNQSLIPVAFSLMASFMSAITL-MGLSAEIVTY--- 76 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~---~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~-~g~~~~~y~~--- 76 (371)
+++|.......+++++++++++- ++.+.| .++.-|| +.+....-++++.+|++.+ .|.+|-.|.+
T Consensus 55 ~fgW~y~l~~~~~l~f~~~lafS-~~G~IrLG~~d~kPef-------S~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~P 126 (679)
T PRK09928 55 TFGWYYLLAATLYIVFVIFIACS-RFGSIKLGPEQSKPEF-------SLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQP 126 (679)
T ss_pred HHhHHHHHHHHHHHHHHHHheeC-CCCCeecCCCCCCCCC-------CcchHHHHHHHHhhhhhheeehHHhHHHHhCCC
Confidence 56777666667777766777662 122222 2334466 3333444456677775543 4555544432
Q ss_pred -------------ChHH--HHHHHHHHHHHHHHHHHHHHHHH-hcCCCcHHH----HHHHHhCCchhhHHHHHHHHH---
Q psy3961 77 -------------GTQF--VVINISYVLATPIVAHIYLPVFF-KLGAVSVYE----YLEKRFGSATRLAASLAFTVQ--- 133 (371)
Q Consensus 77 -------------G~~~--~~~~~~~~~~~~l~~~~~~~~~r-r~~~~Ti~d----~l~~Ryg~~~~~~~~~~~ii~--- 133 (371)
.+.. .+|++-......+.++.++...+ |..-.++.. ++++|-+.+.+.+.=++.++.
T Consensus 127 P~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvf 206 (679)
T PRK09928 127 PEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIF 206 (679)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHH
Confidence 2211 23333332233455556665443 333355555 444442222332222222222
Q ss_pred -HHHHHHHHHHHHHHHHHHHhCChh----HHHHHHHHHHHhHhhhccCc-hhHHHHHHHHHHHHHHHHHHHH
Q psy3961 134 -MVLYMGIALYAPAIALEAVMGLSQ----FYSITLVGLVCLFYSTIGGI-KAVILTDVFQSILMYAAIFAVI 199 (371)
Q Consensus 134 -~~~~~~~q~~~~~~~l~~~~gi~~----~~~~~i~~~i~~~Yt~~GGl-~av~~td~iQ~~~~~~~~~vi~ 199 (371)
...-++....-++.-++.++|+|. ...++++..++...+..-|+ |++-+-.-++..+.+..++.++
T Consensus 207 GiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~~i~~~S~~sGl~KGIk~LS~lN~~La~~LllfVl 278 (679)
T PRK09928 207 GIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSVIIATISVTSGVNKGIRVLSELNVLLALGLILFVL 278 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 222233333333445666788774 33344444444555566666 7888777777666544444433
No 71
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=95.80 E-value=2.3 Score=42.36 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=85.8
Q ss_pred HHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHH-HHHHH---HHHHHHHHHHHh--cCCCcHHHHHHHHhCCchhhHHH
Q psy3961 54 FSLMASFMSAITLMGLSAEIVTYGTQFVVINISY-VLATP---IVAHIYLPVFFK--LGAVSVYEYLEKRFGSATRLAAS 127 (371)
Q Consensus 54 ~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~-~~~~~---l~~~~~~~~~rr--~~~~Ti~d~l~~Ryg~~~~~~~~ 127 (371)
+++++|.+|++.+. .|=.+...|+ |..... .++++ .....+.+..-+ .+.....|..|+.+|++.+.+..
T Consensus 26 l~l~GTAIGAGmLf-LPI~~g~~Gf---~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 26 LGLFGTAIGAGVLF-FPIRAGFGGL---IPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred HHHHHHHHhHHHHH-HHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHH
Confidence 77889999988654 4544444444 332221 22222 222233333222 34678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hCC---hhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3961 128 LAFTVQMVLYMGIALYAPAIALEAV----MGL---SQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 128 ~~~ii~~~~~~~~q~~~~~~~l~~~----~gi---~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~ 200 (371)
+...+...+.+.+-..+..+.++.+ .|+ |.+...++..++... ...-|-|.+.+...+-...+++..+.+..
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~-iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAF-VIWFGKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877777777777777777664 443 555555554444433 34444576666555544444444444443
Q ss_pred HHHHH
Q psy3961 201 VAAIN 205 (371)
Q Consensus 201 ~~~~~ 205 (371)
....+
T Consensus 181 ~LiP~ 185 (443)
T PRK13629 181 SLIPY 185 (443)
T ss_pred HHHHH
Confidence 33333
No 72
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=95.64 E-value=2.7 Score=41.86 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=94.1
Q ss_pred CCCCChHH-HHHHHHhhhhhHHHHhhhhHHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCC
Q psy3961 44 NRNQSLIP-VAFSLMASFMSAITLMGLSAEIVTYG-TQFVVINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGS 120 (371)
Q Consensus 44 gr~l~~~~-~~~s~~at~~s~~t~~g~~~~~y~~G-~~~~~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~ 120 (371)
.|+++.+- ......++..+ ...+..++.....+ ...+.+.++. +...+.++.++..-++. +.=...+|.++-+|+
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~-~gif~~~~~~~~~~~~~~~~~li~~-~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~g~ 88 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIG-SGIFALPGSAAGLAPAAILAWLIAG-IIILFLALSYAELSSAIPSAGGAYAYAKRALGP 88 (466)
T ss_pred CCCcchHHHHHHHHHHhhHh-hhhHhhhhhHHHhchHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCCeeeehhhhcCc
Confidence 35677777 44444444555 44444455554443 2212122222 22233345555554432 333688999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--------hHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLS--------QFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMY 192 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~--------~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~ 192 (371)
+....++....+.............+..+..+++.+ ....+.+.........-.-|.|.....+.+-.++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i 168 (466)
T COG0531 89 RLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKI 168 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 988889998888888888888888888888777742 222333333444445556677777776666666655
Q ss_pred HHHHHHHHHHHHHc
Q psy3961 193 AAIFAVIIVAAINV 206 (371)
Q Consensus 193 ~~~~vi~~~~~~~~ 206 (371)
+..+++.+....+.
T Consensus 169 ~~~i~~~i~~~~~~ 182 (466)
T COG0531 169 IILLIFIILGLFAF 182 (466)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555554444443
No 73
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=95.61 E-value=0.012 Score=59.50 Aligned_cols=32 Identities=16% Similarity=0.033 Sum_probs=26.1
Q ss_pred cChhhhHHHhccCChHHhhccccccCCcccee
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNNPTSNIF 285 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~ 285 (371)
..|+.+||.+++||+|++||+..++......+
T Consensus 251 ~~p~~~~R~~aak~~~~a~~~~~~~~~~~~~~ 282 (471)
T TIGR02119 251 GLPQTAVRCMSYKDSKAMHRAMIIGTIVVGII 282 (471)
T ss_pred CchHHHHHHHhcCCHHHHhhhHhHHHHHHHHH
Confidence 35788999999999999999999886544333
No 74
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=95.61 E-value=3 Score=42.32 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=84.1
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHh-hChHHH-HH-HHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHhC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVT-YGTQFV-VI-NISYVLATPIVAHIYLPVFFKLG-AVSVYEYLEKRFG 119 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~-~G~~~~-~~-~~~~~~~~~l~~~~~~~~~rr~~-~~Ti~d~l~~Ryg 119 (371)
.|+++.+......+++.+|++.+.. ++...+ .|-.+. ++ .+...+.....++.++..-.+.. .-...+|.++.||
T Consensus 41 ~r~l~~~~~~~l~vg~iiGsGif~~-~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~~~g 119 (501)
T TIGR00911 41 KKEITLLSGVGIIVGTIIGSGIFVS-PKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFG 119 (501)
T ss_pred CccccHhHhhHhheeceEEeeEeec-HHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHhHhC
Confidence 6778988887777777777654444 444433 353222 11 11222333445566666655553 3368899999999
Q ss_pred CchhhHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhC---ChhHH--HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHH
Q psy3961 120 SATRLAASLAFTV-QMVLYMGIALYAPAIA-LEAVMG---LSQFY--SITLVGLVCLFYSTIGGIKAVILTDVFQSILMY 192 (371)
Q Consensus 120 ~~~~~~~~~~~ii-~~~~~~~~q~~~~~~~-l~~~~g---i~~~~--~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~ 192 (371)
+....+.+....+ ......+......+.. ++.+.+ .+.+. .+.+..++...+.-.-|.|...+.+.+=..+.+
T Consensus 120 ~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l 199 (501)
T TIGR00911 120 PLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKL 199 (501)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9887777665443 2222333333333333 232332 23322 222222334445555678877777666666555
Q ss_pred HHHHHHHHHHH
Q psy3961 193 AAIFAVIIVAA 203 (371)
Q Consensus 193 ~~~~vi~~~~~ 203 (371)
+.++++.+.++
T Consensus 200 ~~l~~~ii~~~ 210 (501)
T TIGR00911 200 LALLLIIITGW 210 (501)
T ss_pred HHHHHHHHHHH
Confidence 54444444333
No 75
>PRK12488 acetate permease; Provisional
Probab=95.49 E-value=0.012 Score=60.64 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=24.5
Q ss_pred cChhhhHHHhccCChHHhhccccccCCc
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNNPT 281 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~~~ 281 (371)
..||++||++++||+|++||+..++...
T Consensus 276 ~~p~~~qR~~aaks~k~ar~s~~~~~~~ 303 (549)
T PRK12488 276 GLPHILMRFFTVSDAREARKSVLYATGF 303 (549)
T ss_pred cCcHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999887543
No 76
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=95.40 E-value=0.015 Score=58.82 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=23.2
Q ss_pred cChhhhHHHhccCChHHhhccccccCC
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNNP 280 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~~ 280 (371)
..|+.+||++++||+|++||+..++..
T Consensus 252 ~~p~~~qR~~aaks~~~a~~~~~~~~~ 278 (483)
T PRK09442 252 GLPHTAVRCMSYKDSKALHRGIIIGTI 278 (483)
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357799999999999999999888543
No 77
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.21 E-value=0.013 Score=60.28 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=26.8
Q ss_pred cChhhhHHHhccCChHHhhccccccCCcccee
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNNPTSNIF 285 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~ 285 (371)
..||..||++++||+|++||+..++.....++
T Consensus 276 g~P~~~~R~~taks~k~ar~s~~~~~~~~~~~ 307 (549)
T TIGR02711 276 GLPHILMRFFTVSDAKEARKSVFYATGFMGYF 307 (549)
T ss_pred CCchhheeeeecCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999876544444
No 78
>PRK09395 actP acetate permease; Provisional
Probab=95.03 E-value=0.023 Score=58.60 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=24.1
Q ss_pred cChhhhHHHhccCChHHhhccccccCC
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNNP 280 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~~ 280 (371)
..||++||++++||+|++||+..++..
T Consensus 278 ~~p~~~qR~~aaks~k~ar~~~~~~~~ 304 (551)
T PRK09395 278 GLPHILMRFFTVSDAKEARKSVFYATG 304 (551)
T ss_pred cccHHHHhhhccCChHHHHHhHHHHHH
Confidence 468999999999999999999988653
No 79
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.88 E-value=4 Score=39.54 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcc-----------cCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhC
Q psy3961 9 DYAVFILMLVISGAIGIYYRFSGGKQ-----------KTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYG 77 (371)
Q Consensus 9 ~~~i~~~yl~~~l~ig~~~~~~~~~~-----------~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G 77 (371)
-.+.+++|++.....|-+..++-.|. +|-.||.= .+.+.+..=-+++.-+++-++| |-.+..+|
T Consensus 7 ~~~~~~~l~~~Y~~Yg~~l~~~~~~~d~~~~TPA~~~~DGvDYvP----~~~~vlfghhf~sIAGaGPI~G-Pi~aa~~G 81 (376)
T PF02554_consen 7 FLISLAILIIAYRFYGKFLEKKFGKLDDSRPTPAHTMNDGVDYVP----TNKWVLFGHHFASIAGAGPIVG-PILAAQFG 81 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeccCCCCCCCCeeECCCCCCCCC----CchHHhhHHHHHHHhccccchH-HHHHHHhc
Confidence 34444555555555555543221111 22236643 4556666666777778888888 55667788
Q ss_pred hH-H-HHHHHHHHHHHHHHHHHHHHHH-HhcCCCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 78 TQ-F-VVINISYVLATPIVAHIYLPVF-FKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEA 151 (371)
Q Consensus 78 ~~-~-~~~~~~~~~~~~l~~~~~~~~~-rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~ 151 (371)
+- + +|..+|..+..-+- =+.+-.. -|++..|++|..++--|++.|.+..+..++..+.-.++-....+..+..
T Consensus 82 wlPa~lWI~~G~if~GaVH-D~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 82 WLPALLWIVFGCIFAGAVH-DYGSLMASVRHKGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred chHHHHHHHHccHHHHHHH-HHHHHhhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 84 3 46555544332221 1112222 2788999999999999999999999988888877777777766666653
No 80
>PTZ00206 amino acid transporter; Provisional
Probab=94.74 E-value=5.2 Score=40.40 Aligned_cols=137 Identities=11% Similarity=-0.025 Sum_probs=87.0
Q ss_pred HHHHHHHHhhhhhHHHHhhhhHHHHhhChH-HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHH
Q psy3961 50 IPVAFSLMASFMSAITLMGLSAEIVTYGTQ-FVVI-NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAAS 127 (371)
Q Consensus 50 ~~~~~s~~at~~s~~t~~g~~~~~y~~G~~-~~~~-~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~ 127 (371)
...++.+..+.+|++ +++.|....+.|+- +... .+...+... -...+.+--+|.+..|..|.-++-||++.+.+..
T Consensus 63 ~~s~fnL~~~~iGaG-ILsLP~Af~~~G~v~giillil~a~ls~y-s~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~v~ 140 (467)
T PTZ00206 63 AASAFNIASSTVGAG-IVGLPSAANSSGLVMAMIYLIIITAMTIF-SIYALGVAADKTNIRTYEGVARVLLGPWGSYYVA 140 (467)
T ss_pred HHHHHHHHHHHHhHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCCCCHHHHHHHHhCHHHHHHHH
Confidence 445666666666654 67778777777774 3221 222222211 1233344445567789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-C--hhH---------HHHHHHHHHHhHhhhccCchhHHHHHHHHH
Q psy3961 128 LAFTVQMVLYMGIALYAPAIALEAVMG-L--SQF---------YSITLVGLVCLFYSTIGGIKAVILTDVFQS 188 (371)
Q Consensus 128 ~~~ii~~~~~~~~q~~~~~~~l~~~~g-i--~~~---------~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~ 188 (371)
+..++..++...+-+.-.+..++..+. . +.. ...++...+.+-.+..==++...++..+-.
T Consensus 141 ~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 141 ATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 999999988888888888888876653 1 111 112333344555666666777777766643
No 81
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=94.25 E-value=0.03 Score=55.24 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=38.3
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3961 318 INQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYASY 364 (371)
Q Consensus 318 ~~q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~y 364 (371)
.+|+.+||++++||+|++||+...+.+...++.....+.|+.+.+.+
T Consensus 217 ~~p~~~qR~~aak~~~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 263 (406)
T PF00474_consen 217 GAPHFWQRFLAAKSPKTARKGMLIAIIFLIIFYFLTIFIGLIAIALF 263 (406)
T ss_dssp HH-HHHHHHHSSSHHHHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHH
T ss_pred cchHHHHHHHhcCCHHHHHHHHhHHhhhheeeehHHhhhhhhhhccc
Confidence 35889999999999999999999998888887777778888776554
No 82
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=93.92 E-value=0.046 Score=56.36 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=23.4
Q ss_pred ccChhhhHHHhccCChHHhhccccccC
Q psy3961 253 GINQMQVQRYLTMKDYKTAYLRPNVNN 279 (371)
Q Consensus 253 ~~~q~~~qr~~saks~k~ar~~~~~~~ 279 (371)
...||.+||++++||+|++||+..++.
T Consensus 253 ~~~p~~~qR~~aaks~~~a~~~~~~~~ 279 (552)
T TIGR03648 253 AGLPHVIVRFYTVPKVRDARWSAGWAL 279 (552)
T ss_pred ccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 457889999999999999999987663
No 83
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=93.76 E-value=8.8 Score=38.99 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=90.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcC---CcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHH-hhhhH--------
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSG---GKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITL-MGLSA-------- 71 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~---~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~-~g~~~-------- 71 (371)
++.|.......++++.++.+.+- +|.+ .|+++.-|| +.+--..-++++.+|.+.+ .|.+|
T Consensus 50 ~~GW~yil~~~~~l~f~l~ia~S-ryG~irLG~~~~~PEf-------s~~SW~aMLFaAGmGigl~fwgvaEp~~~y~~p 121 (537)
T COG1292 50 NFGWYYILTVLLFLGFVLYLAFS-RYGNIRLGKDDEKPEF-------STLSWLAMLFAAGMGIGLLFWGVAEPVYYYATP 121 (537)
T ss_pred HHHHHHHHHHHHHHHHHhheEEe-ccceeEeCCCCCCCCc-------chhHHHHHHHHcccCceeeEeechhhHHHhcCC
Confidence 34555555555555555555442 1222 234556677 4444455566777776544 23333
Q ss_pred ---------HHHhhChHH--HHHHHHHHHHHHHHHHHHHHH-HHhcCCCcHHHHHHHHhCC----chhhHHHHHHHHHH-
Q psy3961 72 ---------EIVTYGTQF--VVINISYVLATPIVAHIYLPV-FFKLGAVSVYEYLEKRFGS----ATRLAASLAFTVQM- 134 (371)
Q Consensus 72 ---------~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~-~rr~~~~Ti~d~l~~Ryg~----~~~~~~~~~~ii~~- 134 (371)
.+.++.+.. .+|++-...-..+.++.++.. +||..-.++..-++-+.|+ ..+...-++.++..
T Consensus 122 p~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~rk~~pl~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl 201 (537)
T COG1292 122 PPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHYRKGLPLLLSSALYPLLGERIKGPIGHAVDILAIIATL 201 (537)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeEecCCCchhhhhhhhhhcccccCccchhhHHHHHHHHH
Confidence 333334433 233332222334444555543 4554445555555544443 23334444444433
Q ss_pred ------HHHHHHHHHHHHHHHHHHhCCh--hHHHHHHHHHHHhH--hhhccCc-hhHHHHHHHHHHHHHHHHHHHHH
Q psy3961 135 ------VLYMGIALYAPAIALEAVMGLS--QFYSITLVGLVCLF--YSTIGGI-KAVILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 135 ------~~~~~~q~~~~~~~l~~~~gi~--~~~~~~i~~~i~~~--Yt~~GGl-~av~~td~iQ~~~~~~~~~vi~~ 200 (371)
.+..+.|+ ..-++.++|+| .+.-+.++++++++ -+..-|+ |++-+..-++..+....++.+.+
T Consensus 202 ~GiATsLG~ga~qi---~~Gl~~l~gip~~~~~q~~iI~vi~~~~~~S~~sGv~KGIr~LS~~n~~la~~lllfvli 275 (537)
T COG1292 202 FGIATSLGLGALQL---TAGLSYLFGIPNSFAVQAIIIAVITALFTISVWSGLDKGIRVLSNINMVLAFLLLLFVLI 275 (537)
T ss_pred HHHHHHHHHhHHHH---HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 33466778888 23333333333333 3344455 88888888887775554444443
No 84
>KOG1303|consensus
Probab=93.23 E-value=9.9 Score=38.01 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=87.2
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH-HHHHHHHHHHHHHHHHHHHHHHHhc------CCCcHHHHHH
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF-VVINISYVLATPIVAHIYLPVFFKL------GAVSVYEYLE 115 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~~rr~------~~~Ti~d~l~ 115 (371)
..|+.+++...+-.. +.+.+..+++.|-...+-|+.+ ...-+...+-..--+..+..-++++ +..+-+|.-+
T Consensus 34 ~~~~~s~~~a~~~~i-~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHII-NALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred cCCCCcceehhhhee-hhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 477777888777665 4455566778886666667743 3222222111111122233444432 2356899999
Q ss_pred HHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ChhHHHHHHHHHHHhHhhhccCchhHHHHHHH
Q psy3961 116 KRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG--------LSQFYSITLVGLVCLFYSTIGGIKAVILTDVF 186 (371)
Q Consensus 116 ~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g--------i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~i 186 (371)
+-||++.|.+.+.+..+..+......+...+.-++.++. .+...-+++.+.+.+..+..==+.+.-+-...
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~ 191 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLV 191 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHH
Confidence 999977798888888887777777777777777776643 22345666677777666665544444444333
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=92.76 E-value=5.6 Score=40.41 Aligned_cols=142 Identities=17% Similarity=0.103 Sum_probs=91.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhhc-C----------CcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhH
Q psy3961 3 KSFGIVDYAVFILMLVISGAIGIYYRFS-G----------GKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSA 71 (371)
Q Consensus 3 ~~~~~~~~~i~~~yl~~~l~ig~~~~~~-~----------~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~ 71 (371)
||+.++-....++|.+..-.-|.+...| - ++.+|=.||.=. +++.+..--+++.-|++-++| |-
T Consensus 1 m~~~~~v~aa~~iy~igYr~Yg~fi~eKV~~~dp~R~TPA~~~nDG~DYVPt----nk~vlfGhHFaaIAGAGPivG-Pv 75 (575)
T COG1966 1 MSMLWFVLAAAIVYAIGYFFYGKFIAEKVFRLDPNRPTPAHRKNDGVDYVPT----NKWVLFGHHFASIAGAGPIVG-PA 75 (575)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCceeccCCcccccC----CchhhhHHHHHHHhccCcchh-HH
Confidence 3556666666666777766666662211 1 113344577444 455666667777778889999 77
Q ss_pred HHHhhCh-HH-HHHHHHHHHHHHHHHHHHHHHH-HhcCCCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 72 EIVTYGT-QF-VVINISYVLATPIVAHIYLPVF-FKLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIA 148 (371)
Q Consensus 72 ~~y~~G~-~~-~~~~~~~~~~~~l~~~~~~~~~-rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~ 148 (371)
.+.++|+ .+ +|..+|..++.-+- -++.-.. -|++..|++|..++--|+..+.+..+..++.++...++-.....++
T Consensus 76 lAAq~G~Lp~~LWIl~G~VfaGaVh-D~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 76 LAAQYGWLPAFLWILLGCVFAGAVH-DYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred HHHHhcCcHHHHHHHHhhhhhhhhh-hhhheeeeeccCCccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999994 44 46555544332221 1111222 2788899999999999999999988888877777666666666665
Q ss_pred HH
Q psy3961 149 LE 150 (371)
Q Consensus 149 l~ 150 (371)
+.
T Consensus 155 l~ 156 (575)
T COG1966 155 LA 156 (575)
T ss_pred Hh
Confidence 54
No 86
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=92.66 E-value=13 Score=37.76 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCchhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCChh----HHHHHHHHHHHhHhhhccCc-hhH
Q psy3961 110 VYEYLEKRFGSATRLAASLAFTVQ----MVLYMGIALYAPAIALEAVMGLSQ----FYSITLVGLVCLFYSTIGGI-KAV 180 (371)
Q Consensus 110 i~d~l~~Ryg~~~~~~~~~~~ii~----~~~~~~~q~~~~~~~l~~~~gi~~----~~~~~i~~~i~~~Yt~~GGl-~av 180 (371)
....+++|-++..+.+.=++.++. ...-++....-.+.-++.++|+|. ...+++...++...+..-|+ |++
T Consensus 163 l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~i~~~S~~~Gl~kGI 242 (485)
T PF02028_consen 163 LYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITVIFTISAVSGLDKGI 242 (485)
T ss_dssp CHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred hhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445666665554444443333333 223344444445666778888873 33333333444445556666 788
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3961 181 ILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 181 ~~td~iQ~~~~~~~~~vi~~ 200 (371)
-+-.-++..+.+..++.++.
T Consensus 243 k~LS~~n~~l~~~ll~~vl~ 262 (485)
T PF02028_consen 243 KRLSNINVYLAFALLLFVLL 262 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888887776655555444
No 87
>PRK09950 putative transporter; Provisional
Probab=91.15 E-value=19 Score=36.66 Aligned_cols=189 Identities=15% Similarity=0.132 Sum_probs=97.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHH-hhhhHHHHhh------
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITL-MGLSAEIVTY------ 76 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~-~g~~~~~y~~------ 76 (371)
+++|.........+++++++++ .++.+.|-.+ | .-+.+.+.-..-++++.++++.+ .|..|-.|.+
T Consensus 48 ~fgW~y~~~~~~~~~f~~~laf-s~yG~irLG~--~----kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g 120 (506)
T PRK09950 48 TFGSPVQLFVLLAMILVLYLAT-SKYGNIRLGE--G----KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLN 120 (506)
T ss_pred HhhHHHHHHHHHHHHHHHHHhc-CCCCCeecCC--C----CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCC
Confidence 4566655555555665666665 2222223222 1 22345555555667777776554 3555544432
Q ss_pred -----------ChH--HHHHHHHHHHHHHHHHHHHHH--HHHhcCCCcHHHHHHHHhCC----chhhHHHHHHHHH----
Q psy3961 77 -----------GTQ--FVVINISYVLATPIVAHIYLP--VFFKLGAVSVYEYLEKRFGS----ATRLAASLAFTVQ---- 133 (371)
Q Consensus 77 -----------G~~--~~~~~~~~~~~~~l~~~~~~~--~~rr~~~~Ti~d~l~~Ryg~----~~~~~~~~~~ii~---- 133 (371)
-+. ..+|++-....+.+.++.++. .+||.+-.++.+-++--+|+ ..+.+.=++.++.
T Consensus 121 ~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~G 200 (506)
T PRK09950 121 IAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHVRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGA 200 (506)
T ss_pred CCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHH
Confidence 111 123333333234455556665 33565666677666555553 2333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChh----HHHHHHHHHHHhHhhhccCc-hhHHHHHHHHHHHHHHHHHHHH
Q psy3961 134 MVLYMGIALYAPAIALEAVMGLSQ----FYSITLVGLVCLFYSTIGGI-KAVILTDVFQSILMYAAIFAVI 199 (371)
Q Consensus 134 ~~~~~~~q~~~~~~~l~~~~gi~~----~~~~~i~~~i~~~Yt~~GGl-~av~~td~iQ~~~~~~~~~vi~ 199 (371)
...-++....-.+.-++.++|+|. ...+++...++...+..-|+ |++-+-.-++..+.+..++.++
T Consensus 201 vatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vl 271 (506)
T PRK09950 201 LTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSGVIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVL 271 (506)
T ss_pred HHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 223333334444556677788775 33444444555556677777 8888888888666554444433
No 88
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=90.80 E-value=19 Score=36.11 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=57.6
Q ss_pred HHHHHHHHHHH-HHhcCCCcHHHHHHHHhCC----chhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCChh----
Q psy3961 91 TPIVAHIYLPV-FFKLGAVSVYEYLEKRFGS----ATRLAASLAFTVQMV----LYMGIALYAPAIALEAVMGLSQ---- 157 (371)
Q Consensus 91 ~~l~~~~~~~~-~rr~~~~Ti~d~l~~Ryg~----~~~~~~~~~~ii~~~----~~~~~q~~~~~~~l~~~~gi~~---- 157 (371)
..+.++.++.. +||.+-.++.+-++-.+|+ ..+.+.=++.++..+ .-++....-.+.-++.++|+|.
T Consensus 102 Y~l~ala~aY~~~rk~~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~~~~ 181 (453)
T TIGR00842 102 YALVGLALAYFHVRKGLPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDSFWL 181 (453)
T ss_pred HHHHHHHHHHhheecCCCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33444555543 3455556666666555543 233333333333322 2333333444556777888874
Q ss_pred HHHHHHHHHHHhHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHH
Q psy3961 158 FYSITLVGLVCLFYSTIGGI-KAVILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 158 ~~~~~i~~~i~~~Yt~~GGl-~av~~td~iQ~~~~~~~~~vi~~ 200 (371)
...++++..++...+..-|+ |++-+-.-++..+.+..++.+++
T Consensus 182 ~~~ii~~i~~~f~~S~~~Gl~kGIk~LS~~n~~l~~~ll~fvli 225 (453)
T TIGR00842 182 QALIILCVTALACISVASGVGKGIKILSNINMALAFLLLLFVLI 225 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455666666 88888777777776554444443
No 89
>PRK15015 carbon starvation protein A; Provisional
Probab=89.99 E-value=12 Score=39.03 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=67.5
Q ss_pred CcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChH-H-HHHHHHHHHHHHHHHHHHHHHH-HhcCCCcHHH
Q psy3961 36 TNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQ-F-VVINISYVLATPIVAHIYLPVF-FKLGAVSVYE 112 (371)
Q Consensus 36 ~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~-~-~~~~~~~~~~~~l~~~~~~~~~-rr~~~~Ti~d 112 (371)
|-.||.=.+|. .+.-=-+++.-|++-++| |-.+.+.|+- + +|..+|..+..-+- =+.+-.. -|++..|+.|
T Consensus 76 DG~DYvPt~k~----VLfGHHFasIAGAGPivG-PvlAa~~GwlP~~LWIl~G~vf~GaVh-D~~~L~~S~R~~GrSig~ 149 (701)
T PRK15015 76 DGLDYVPTDKK----VLFGHHFAAIAGAGPLVG-PVLAAQMGYLPGMIWLLAGVVLAGAVQ-DFMVLFVSTRRDGRSLGE 149 (701)
T ss_pred CCCCcCcCCcc----chhHHHHHHHhccCccHH-HHHHHHHcchHHHHHHHHcceeechhh-hhhheeeeecCCCccHHH
Confidence 33477555554 455556666678888888 5566677873 3 35444433221111 0001111 2778899999
Q ss_pred HHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 113 YLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIAL 149 (371)
Q Consensus 113 ~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l 149 (371)
..++--|++.+.+..+..++.++..+++-.....+.+
T Consensus 150 ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 150 LVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888777777776666655555554
No 90
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=89.96 E-value=14 Score=37.62 Aligned_cols=162 Identities=14% Similarity=0.213 Sum_probs=113.1
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCCcHHHHHHHHh-C
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVA---HIYLPVFFKLGAVSVYEYLEKRF-G 119 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~---~~~~~~~rr~~~~Ti~d~l~~Ry-g 119 (371)
.|+++...+.+--.+..+|++-++|......+.|-.+.. +++.+....+. .-++..---.....-..-...|| +
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~l--i~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLL--IAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 488999999999999999999999998888888887654 22222222111 11111111122111133445677 6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 120 SATRLAASLAFTVQMVLYMGIALYAPAIALEAVM--GLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 120 ~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~--gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
+......+....+....-++.|+.+++.+++.-+ .+|.+..+.+..+++++.-.+| .|+=--++..-..+.++.++.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~-Vk~fGE~Efw~s~iKV~~ii~ 199 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFG-VKGFGETEFWFSSIKVLTIIG 199 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhc-ccccceehHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999876 3577777777777777766665 888888888888887766666
Q ss_pred HHHHHHHH-cCC
Q psy3961 198 VIIVAAIN-VGG 208 (371)
Q Consensus 198 i~~~~~~~-~gG 208 (371)
.++.+.-. .||
T Consensus 200 Fii~gii~~~Gg 211 (541)
T COG0833 200 FIILGIIIICGG 211 (541)
T ss_pred HHHHHHHHhcCC
Confidence 55554433 354
No 91
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=89.93 E-value=23 Score=35.62 Aligned_cols=107 Identities=11% Similarity=0.031 Sum_probs=63.8
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCc
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~ 121 (371)
.|+++.+-...--++.......+....+.+...|-++. |-.+...++....++.++..-.++ +.=...+|.++.+|+.
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~g~~ 91 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEV 91 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHcCcc
Confidence 47777666543333332233344555666655444333 333334445556666777766665 3446889999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALE 150 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~ 150 (371)
...+.+....+......+....+....+.
T Consensus 92 ~gf~~gW~~~~~~~~~~~~~~~~~~~~~~ 120 (475)
T TIGR03428 92 IGWFAGWFMIIAQIVTAAAAAIALQVVLP 120 (475)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777665555555555544443
No 92
>TIGR00930 2a30 K-Cl cotransporter.
Probab=89.66 E-value=8.9 Score=42.34 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=89.3
Q ss_pred cCCCCChHHHHHHH-HhhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHh-c-CCCcHHHHHHHHh
Q psy3961 43 GNRNQSLIPVAFSL-MASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFK-L-GAVSVYEYLEKRF 118 (371)
Q Consensus 43 agr~l~~~~~~~s~-~at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr-~-~~~Ti~d~l~~Ry 118 (371)
.+|++|++...+.- +.+.+|...|+-.+...-+.|....+. .+...+...+.++-++..--+ . +.=-.+.|+++-+
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisral 153 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSL 153 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 46789998888877 778888888887777776778653322 111222223334444444433 1 3334667889999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------h---HHHHHHHHHHHhHhhhccCchhHHHHHHHHH
Q psy3961 119 GSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLS-------Q---FYSITLVGLVCLFYSTIGGIKAVILTDVFQS 188 (371)
Q Consensus 119 g~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~-------~---~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~ 188 (371)
|+......+++..+....-.+....+.+..+..+++-+ . ...+.++.++++....+-|+|-....+.+=.
T Consensus 154 Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q~vl~ 233 (953)
T TIGR00930 154 GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQVLFL 233 (953)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99888888888777777777888887877777765411 0 1112223333344455556776555444433
Q ss_pred HH
Q psy3961 189 IL 190 (371)
Q Consensus 189 ~~ 190 (371)
++
T Consensus 234 vi 235 (953)
T TIGR00930 234 VI 235 (953)
T ss_pred HH
Confidence 33
No 93
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=89.65 E-value=0.79 Score=46.70 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=27.1
Q ss_pred hHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcC
Q psy3961 320 QMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVST----CFSGLAIYASYHN 366 (371)
Q Consensus 320 q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~G~~~~~~y~~ 366 (371)
++..-..+..+.....-.++++++.+...+.... ..+....+..|++
T Consensus 310 ~d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy~~ 360 (502)
T PRK15419 310 AERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKA 360 (502)
T ss_pred cchHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455667777777777776443 4456666777753
No 94
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=88.87 E-value=2.4 Score=42.23 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=37.7
Q ss_pred chhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeee
Q psy3961 237 WFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFC 288 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~ 288 (371)
..++.+.+.+ ....-||...|+++.+|.|||||+..|++..-.+||..
T Consensus 239 ~isl~~aLm~----GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~ 286 (529)
T COG4147 239 FISLGFALMV----GTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYIL 286 (529)
T ss_pred HHHHHHHHHH----ccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554 23456999999999999999999999998888888876
No 95
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=88.77 E-value=29 Score=35.16 Aligned_cols=91 Identities=12% Similarity=0.172 Sum_probs=57.4
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHhCC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIVAHIYLPVFFKLG--AVSVYEYLEKRFGS 120 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~~rr~~--~~Ti~d~l~~Ryg~ 120 (371)
+|+++.+-+..-.+++.+|.. +.|......|.+.. |+.++..+.....++.++..-.+.. .=...+|.++-||+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~---~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA---NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC---chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 467888887776666666632 23333345677654 4444444445556667777666654 35899999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLY 137 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~ 137 (371)
+.+.+.+.......+.+
T Consensus 83 ~~gf~~~w~~~~~~~~~ 99 (496)
T PRK15238 83 KFAFIGTFMWFASYIIW 99 (496)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88877665544444433
No 96
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=88.18 E-value=33 Score=35.03 Aligned_cols=190 Identities=15% Similarity=0.077 Sum_probs=92.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHH-hhhhHHHHhh-----C
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITL-MGLSAEIVTY-----G 77 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~-~g~~~~~y~~-----G 77 (371)
+++|.........+++++.+++ .++.+.|-.+ | .-..+.+.-..-++++.++++.+ .|.+|-.|.+ |
T Consensus 50 ~fgW~y~~~~~~~~~~~~~laf-skyG~irLG~--~----kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g 122 (504)
T PRK03356 50 VWGWAFEWYMVVMLFGWFWLVF-GPYAKKRLGD--E----KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFG 122 (504)
T ss_pred HhhHHHHHHHHHHHHHHHHHee-CCCCCeecCC--C----CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCC
Confidence 4556555555555555556654 2222223221 1 22345555555667777776554 3455544432 2
Q ss_pred ------------hHH--HHHHHHHHHHHHHHHHHHHHHH-HhcCC-CcHHHHHHHHhC-----CchhhHHHHHHHHHHH-
Q psy3961 78 ------------TQF--VVINISYVLATPIVAHIYLPVF-FKLGA-VSVYEYLEKRFG-----SATRLAASLAFTVQMV- 135 (371)
Q Consensus 78 ------------~~~--~~~~~~~~~~~~l~~~~~~~~~-rr~~~-~Ti~d~l~~Ryg-----~~~~~~~~~~~ii~~~- 135 (371)
+.. .+|++-....+.+.++.++... ||.+- .++.+-++--+| +..+.+.=++.++..+
T Consensus 123 ~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~ 202 (504)
T PRK03356 123 LEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIF 202 (504)
T ss_pred CCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHH
Confidence 221 2333322223344555555443 33332 355655554444 2233333333333322
Q ss_pred ---HHHHHHHHHHHHHHHHHhCChhH----HHHHHHHHHHhHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHH
Q psy3961 136 ---LYMGIALYAPAIALEAVMGLSQF----YSITLVGLVCLFYSTIGGI-KAVILTDVFQSILMYAAIFAVII 200 (371)
Q Consensus 136 ---~~~~~q~~~~~~~l~~~~gi~~~----~~~~i~~~i~~~Yt~~GGl-~av~~td~iQ~~~~~~~~~vi~~ 200 (371)
.-++....-.+.-++.++|+|.. ..+++...++...+..-|+ |++-+-.-++..+.+..++.+++
T Consensus 203 GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli 275 (504)
T PRK03356 203 AMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFI 275 (504)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23333333445567778887742 3333333444445555666 78888777777776554444443
No 97
>COG4146 Predicted symporter [General function prediction only]
Probab=87.85 E-value=0.16 Score=48.73 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=30.4
Q ss_pred hHHhhHHHHhhhcccChhhhHHHhccCChHHhhcccccc
Q psy3961 240 LIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVN 278 (371)
Q Consensus 240 ~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~ 278 (371)
+.+-..+ +||+||...||.+++||.++.+|+..++
T Consensus 251 ll~vN~F----YWcTNQ~IvQRtLaak~LaeGQKG~Lla 285 (571)
T COG4146 251 LLLVNTF----YWCTNQGIVQRTLAAKSLAEGQKGALLA 285 (571)
T ss_pred Hhhhhee----eeeccHHHHHHHHhhhhhhccccccHHH
Confidence 4455554 8999999999999999999999999876
No 98
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=87.50 E-value=30 Score=33.90 Aligned_cols=145 Identities=16% Similarity=0.273 Sum_probs=79.2
Q ss_pred HHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHH
Q psy3961 54 FSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVL---ATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAF 130 (371)
Q Consensus 54 ~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~---~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ 130 (371)
+.+++-.+|++.++-.|..+++.|-...+...++.+ +.++.+..-.+ |.+ .-.+.+++|+|++...+.....
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~---~~g--G~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALA---LVG--GGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheee---ecC--CCHHHHHHHhChHHHHHHHHHH
Confidence 467888899999999999999998664443344433 33344433222 333 3578999999998777765555
Q ss_pred HHHHHH-H----HHHHHHHHHHHHHHHhCChh-HHHHHHHHHHHhHhhhccCchhHHHHHHHHHHH---HHHHHHHHHHH
Q psy3961 131 TVQMVL-Y----MGIALYAPAIALEAVMGLSQ-FYSITLVGLVCLFYSTIGGIKAVILTDVFQSIL---MYAAIFAVIIV 201 (371)
Q Consensus 131 ii~~~~-~----~~~q~~~~~~~l~~~~gi~~-~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~---~~~~~~vi~~~ 201 (371)
.+..-+ + .+.--+-.+ ++.+++.+. .....+..++...-+..=-+|..-..|.+|-++ +++.+.++.+.
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~ 154 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG--IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIK 154 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH--HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHH
Confidence 533222 2 333333222 444555321 122233333333332223356666777777766 34444444444
Q ss_pred HHHH
Q psy3961 202 AAIN 205 (371)
Q Consensus 202 ~~~~ 205 (371)
++.+
T Consensus 155 g~~~ 158 (378)
T TIGR00796 155 ALLW 158 (378)
T ss_pred HHHc
Confidence 4444
No 99
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=87.39 E-value=1.7 Score=43.75 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=88.3
Q ss_pred hhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhhHHHHHHHHHHH
Q psy3961 58 ASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRLAASLAFTVQMV 135 (371)
Q Consensus 58 at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~ 135 (371)
+..+++..+++......+.|..+... .+-..+...+...-++..-|+. +.-...+|.++=.|+......+....+..+
T Consensus 8 g~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~~~~ 87 (478)
T PF00324_consen 8 GGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWLSYI 87 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHHHHH
Confidence 45567777888777777777744321 2222223333344445555554 344677888877788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH---hCCh-hHHH---HHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 136 LYMGIALYAPAIALEAV---MGLS-QFYS---ITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIV 201 (371)
Q Consensus 136 ~~~~~q~~~~~~~l~~~---~gi~-~~~~---~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~ 201 (371)
...+.+..+.+..++.. .+.+ .+.. ......+.......=|.|.....+.+=..+.++.++...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~ 160 (478)
T PF00324_consen 88 AAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIV 160 (478)
T ss_pred HHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhh
Confidence 89999999999888865 2344 2222 12223333334444578888887777666655555444433
No 100
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=84.48 E-value=1.3 Score=42.69 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=54.9
Q ss_pred cChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhccchHHHHHHhcCCChH
Q psy3961 254 INQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYK 333 (371)
Q Consensus 254 ~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~~~~~~~ 333 (371)
..||..-|+.+.||+|..++++.++..+.++++++.-+. |.+....--...+.|++.+.++.|...
T Consensus 250 glP~t~vr~ia~kDskaih~gmiigt~vi~il~~gmhl~--------------G~~graViPdlt~~D~Vip~lalkvlp 315 (473)
T COG4145 250 GLPHTAVRCIAFKDSKAIHRGMIIGTIVIAILMLGMHLA--------------GALGRAVIPDLTVVDLVIPTLALKVLP 315 (473)
T ss_pred cCcHHHHHHHhccchhHHhcCcchHHHHHHHHHHHHHHh--------------hhhhhhhcCCCCccchhHHHHHHHhcc
Confidence 468999999999999999999999877777666552111 000001101113455667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3961 334 TAVRSLWVSWPLLTLLSVS 352 (371)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~ 352 (371)
..-.+++++++....+...
T Consensus 316 p~~agifl~apmaAiMSTI 334 (473)
T COG4145 316 PFAAGIFLAAPMAAIMSTI 334 (473)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7777777777666665543
No 101
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=81.78 E-value=64 Score=32.87 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHhCCc
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFFKL--GAVSVYEYLEKRFGSA 121 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~rr~--~~~Ti~d~l~~Ryg~~ 121 (371)
|+++.+-+.+-.++... +..+.| ..+++|.+...+ .++..+-.+..++.++..-... +.-...+|.++-||++
T Consensus 4 ~~l~~~~~~~~~~~~v~---~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 4 KKLSLFGFFAITASMVL---AVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred cEeeHHHHHHHHHHHHH---HHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 45666555544443333 334555 355788876544 4444433444566666654432 3346788999999998
Q ss_pred hhhHHHHHHHHHHH
Q psy3961 122 TRLAASLAFTVQMV 135 (371)
Q Consensus 122 ~~~~~~~~~ii~~~ 135 (371)
.+.++.....+...
T Consensus 80 ~Gf~~~~~~W~~~~ 93 (507)
T TIGR00910 80 FGFAAIFFGWFQIA 93 (507)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776655555443
No 102
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=80.17 E-value=0.14 Score=50.30 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=90.7
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH-HHHHHHHHHHHHHHHHHHHHHHH----hcCCCcHHHHHHHHhC
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF-VVINISYVLATPIVAHIYLPVFF----KLGAVSVYEYLEKRFG 119 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~~~r----r~~~~Ti~d~l~~Ryg 119 (371)
|+-+++...+.+..+.+|++ .++.|-..++.|+-. ....+........-...+.+-.+ +.+..|..|..++-||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G-~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G 79 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAG-ILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG 79 (409)
T ss_pred CCccHHHHHHHHHHHHHhHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 45667777888877777665 567787777777742 22111111111122223333322 3478899999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHH
Q psy3961 120 SATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG-------LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILM 191 (371)
Q Consensus 120 ~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-------i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~ 191 (371)
++.+.+..++..+...+.....+...+..++.+.+ .+.....++..+++...+..-=++...++..+-.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~ 158 (409)
T PF01490_consen 80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSI 158 (409)
T ss_pred ccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhcc
Confidence 99899998888888777666666666766666554 3445555566666666666655666665555544333
No 103
>KOG1304|consensus
Probab=79.97 E-value=26 Score=35.07 Aligned_cols=91 Identities=14% Similarity=0.236 Sum_probs=73.9
Q ss_pred HHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHH
Q psy3961 115 EKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG------LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQS 188 (371)
Q Consensus 115 ~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g------i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~ 188 (371)
.++||+..|.++-...++..++...+-+.=.+.=++.+.+ +|....+++.....+.-....=+|..+-...+--
T Consensus 131 ~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~An 210 (449)
T KOG1304|consen 131 LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFAN 210 (449)
T ss_pred HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHH
Confidence 7888999999999999999888877777666666666554 5667777788888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3961 189 ILMYAAIFAVIIVAAIN 205 (371)
Q Consensus 189 ~~~~~~~~vi~~~~~~~ 205 (371)
+++++++.++....+..
T Consensus 211 v~~~~g~~ii~~y~~~~ 227 (449)
T KOG1304|consen 211 VFILVGLAIIMYYLVQD 227 (449)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999998887665544
No 104
>KOG1287|consensus
Probab=78.98 E-value=29 Score=35.07 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=82.9
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhCh---HHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCcHHHHHHHH
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGT---QFVVINISYVLATPIVAHIYLPV---FFKLGAVSVYEYLEKR 117 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~---~~~~~~~~~~~~~~l~~~~~~~~---~rr~~~~Ti~d~l~~R 117 (371)
+|+++.+-...-++.+.+|++-|..-.+.-...|- +-..|..+.. -.++-++..+.. ++|.+.. .-|+.+-
T Consensus 11 ~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi-~s~~galcyaELGT~ipksGgd--~ayi~~a 87 (479)
T KOG1287|consen 11 KKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGI-ISIIGALCYAELGTSIPKSGGD--YAYISEA 87 (479)
T ss_pred cceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCcc--hhhHHHH
Confidence 45667666666666777887766654443333332 2122222222 222233444432 3444321 3488888
Q ss_pred hCCchhhHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHhC---ChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHH
Q psy3961 118 FGSATRLAASLAFTVQMVL-YMGIALYAPAIA-LEAVMG---LSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMY 192 (371)
Q Consensus 118 yg~~~~~~~~~~~ii~~~~-~~~~q~~~~~~~-l~~~~g---i~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~ 192 (371)
||+...........+...+ ..+.+-...+.. ++..++ .|....-++....+++-+. =+..+|=+.-.+|.++.+
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~vq~~ft~ 166 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTL-INSFSVKWATRVQIVFTI 166 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHH
Confidence 9986555555544444444 346676666665 777774 5555555555444444444 446677788899988865
Q ss_pred HHHHHHH
Q psy3961 193 AAIFAVI 199 (371)
Q Consensus 193 ~~~~vi~ 199 (371)
.=++++.
T Consensus 167 ~Kl~al~ 173 (479)
T KOG1287|consen 167 AKLLALL 173 (479)
T ss_pred HHHHHHH
Confidence 4443333
No 105
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=76.86 E-value=2.8 Score=42.69 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=17.7
Q ss_pred hcccChhhhHHHhccCChHHhhc
Q psy3961 251 LYGINQMQVQRYLTMKDYKTAYL 273 (371)
Q Consensus 251 ~~~~~q~~~qr~~saks~k~ar~ 273 (371)
.+...||..||.++.||+|+.+|
T Consensus 247 ~~~~~~~i~~r~~~~~~~~~~~~ 269 (493)
T COG0591 247 GYFGQPHILPRFMAAKSIKSLPK 269 (493)
T ss_pred hhhcCchhhhhhhhhccHhhhHH
Confidence 34568999999999887776553
No 106
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=75.72 E-value=90 Score=31.16 Aligned_cols=152 Identities=16% Similarity=0.236 Sum_probs=80.2
Q ss_pred ChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhh
Q psy3961 48 SLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVL---ATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRL 124 (371)
Q Consensus 48 ~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~---~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~ 124 (371)
....+++.++|-.+|++.++=-|..+++.|-..++-.+|..+ ++.+.+.+-.- |.+. +..| +.+|=|++...
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~---~~~~-~~~~-l~~~v~~~f~~ 78 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVA---KSGG-GIED-LASRVGPKFAL 78 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh---hcCC-CHHH-HhcccCcHHHH
Confidence 456789999999999999999999999999987776666543 33333322222 2232 3333 34455555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHH---HHHHHHH
Q psy3961 125 AASLAFTVQMVLYMGIALYAPAIALE----AVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSIL---MYAAIFA 197 (371)
Q Consensus 125 ~~~~~~ii~~~~~~~~q~~~~~~~l~----~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~---~~~~~~v 197 (371)
+...+..+..-+ ..+-....+..+| .+++.+.+...++..++...-+..==+|-.-..|.+==++ +++.+.+
T Consensus 79 if~~~i~l~IGP-~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~i 157 (427)
T PF05525_consen 79 IFTILIYLSIGP-LFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAI 157 (427)
T ss_pred HHHHHHHHHHHh-cccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Confidence 444333322111 1122222233333 3445333444444444443333333356666677764343 3444444
Q ss_pred HHHHHHHH
Q psy3961 198 VIIVAAIN 205 (371)
Q Consensus 198 i~~~~~~~ 205 (371)
+.+.++.+
T Consensus 158 lii~~i~~ 165 (427)
T PF05525_consen 158 LIIKGIFS 165 (427)
T ss_pred HHHHHHHc
Confidence 44444443
No 107
>KOG2466|consensus
Probab=75.57 E-value=97 Score=31.42 Aligned_cols=276 Identities=12% Similarity=0.108 Sum_probs=135.9
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CcHHHHHHHHhCCc
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLG-A--VSVYEYLEKRFGSA 121 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~-~--~Ti~d~l~~Ryg~~ 121 (371)
|.-+++-...-=.+..++..|.+. ++.+-+-|++...-.+...+|..+.+.+..--- |-+ . .+-|=.=|.-||-.
T Consensus 54 Rtws~~~~~~fW~~~~fnv~Tw~i-a~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns-~~G~~yhIsFpv~sR~sFGiy 131 (572)
T KOG2466|consen 54 RTWSWWNYIAFWLADSFNVNTWMI-AGSALELGLSWWQTWITVWVGYLFTAIFLVLNS-RPGSDYHISFPVLSRSSFGIY 131 (572)
T ss_pred ccccHHHHHHHHHhccccccceee-hhhHHhccCCHHHHHHHHHHHHHHHHHHHHHcc-CCCcccccceeeeeeeehhhh
Confidence 344555444333344444444433 344556677654333444555555543332111 111 0 11111111223322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------Chh-----------HHHHHHHHHHHhHhhhccCchhHHH
Q psy3961 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMG--------LSQ-----------FYSITLVGLVCLFYSTIGGIKAVIL 182 (371)
Q Consensus 122 ~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g--------i~~-----------~~~~~i~~~i~~~Yt~~GGl~av~~ 182 (371)
...+-.+.=++..+.|-+.|..-.|.-++.++. +|. ..+-++.-++..... +=+..-.-.
T Consensus 132 gS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~-~~~p~~ir~ 210 (572)
T KOG2466|consen 132 GSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY-WFPPYKIRH 210 (572)
T ss_pred HhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee-eccHHHhhh
Confidence 222233333345556777777777776665541 332 233344444443333 334555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhhCCccccccCCCCCcccccchhhH--HhhHHHHhhhcccChhhhH
Q psy3961 183 TDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLI--IGGIFTYCSLYGINQMQVQ 260 (371)
Q Consensus 183 td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~q~~~q 260 (371)
--..+.++...++.-.++..+.+.+|.+++.....+. ......|..+ +...+..+....+||..+.
T Consensus 211 lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~------------~gs~~aWa~~~~i~~~~~~fstl~~N~pDFs 278 (572)
T KOG2466|consen 211 LFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTV------------SGSAHAWAFVRSIMSCIANFSTLIVNAPDFS 278 (572)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcc------------cccchhHHHHHHHHHHHhccchhhccCchhH
Confidence 5667777777777777888889999977775541111 1111223332 3333444566678999999
Q ss_pred HHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHHHHHHHHHHhc---cchHH-HHHHhcCCChHHHH
Q psy3961 261 RYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYG---INQMQ-VQRYLTMKDYKTAV 336 (371)
Q Consensus 261 r~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~q~~-~qr~~~~~~~~~~~ 336 (371)
|+ +|++++.-.+.+++.|+..-...+++.+- +. +..-.++ -+|.+ .-+++.....+-+|
T Consensus 279 RF--~ksp~a~~~~Ql~alp~~~~l~~liGVlv-------------~s--a~~~iYG~~~W~Pldil~~~l~~~y~~G~R 341 (572)
T KOG2466|consen 279 RF--AKSPNAIWWGQLIALPLPFGLTPLIGVLV-------------TS--ASKIIYGTNYWSPLDILNQWLDTNYSAGAR 341 (572)
T ss_pred hh--cCCCCccchhhhhhhhhhhhhhhheeeEe-------------hh--hhhhhhcccccCHHHHHHHHhccccccccc
Confidence 98 46666666666666665444333333221 10 1111112 23333 45566655666677
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3961 337 RSLWVSWPLLTLLSVS 352 (371)
Q Consensus 337 ~~~~~~~~~~~~~~~~ 352 (371)
.+.+..++...+-...
T Consensus 342 AgvFfi~~~f~laql~ 357 (572)
T KOG2466|consen 342 AGVFFIGFGFALAQLG 357 (572)
T ss_pred hhhhHHHHHHHHHHHh
Confidence 7777666655554443
No 108
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=70.51 E-value=1.2e+02 Score=30.37 Aligned_cols=136 Identities=17% Similarity=0.244 Sum_probs=74.8
Q ss_pred CChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHhCCchhh
Q psy3961 47 QSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFV-VINISYVLATPIVAHIYLPVFFKL-GAVSVYEYLEKRFGSATRL 124 (371)
Q Consensus 47 l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~~rr~-~~~Ti~d~l~~Ryg~~~~~ 124 (371)
++.+-+.+-..++.+| +-+.+.. ...|.+.. ++.++..+..+..++.++..-.+. +.-...+|.++.||+....
T Consensus 3 ~~~~~l~~~~~~~v~~---~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 3 LTVVTLAIMNITAVVS---LRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred ccHHHHHHHHHHHHHH---hhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 4444444433333333 3343444 35777654 444444444445666777665554 3346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------C--hhHHHHH--HHHHHHhHhhhccCchhHHHHHHH
Q psy3961 125 AASLAFTVQMVLYMGIALYAPAIALEAVMG-------L--SQFYSIT--LVGLVCLFYSTIGGIKAVILTDVF 186 (371)
Q Consensus 125 ~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g-------i--~~~~~~~--i~~~i~~~Yt~~GGl~av~~td~i 186 (371)
..+....+....+...++...+..++...+ . +.+.... +.....+.+.-.-|.|.....+.+
T Consensus 79 ~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~ 151 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKW 151 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 888887777766665555444444432211 1 2222222 222223344566678877766544
No 109
>PLN03074 auxin influx permease; Provisional
Probab=69.26 E-value=1.3e+02 Score=30.35 Aligned_cols=129 Identities=15% Similarity=0.076 Sum_probs=69.8
Q ss_pred HHhhhhhHHHHhhhhHHHHhhChH-HHHHHHHHH-HHHHHHHHHHHH---HHH-hcC--C----C---cHHHHHHHHhCC
Q psy3961 56 LMASFMSAITLMGLSAEIVTYGTQ-FVVINISYV-LATPIVAHIYLP---VFF-KLG--A----V---SVYEYLEKRFGS 120 (371)
Q Consensus 56 ~~at~~s~~t~~g~~~~~y~~G~~-~~~~~~~~~-~~~~l~~~~~~~---~~r-r~~--~----~---Ti~d~l~~Ryg~ 120 (371)
+....+ +..+++.|-...+-|+- +....+... ++.. -...+.+ .+| |++ . . +-.|..+..+|+
T Consensus 55 l~~~~v-G~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Y-t~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~ 132 (473)
T PLN03074 55 CASNQV-AQVLLTLPYSFSQLGMLSGILFQIFYGLLGSW-TAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGP 132 (473)
T ss_pred HHHHHH-hHHHHhHHHHHHHccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcCh
Confidence 544554 55678888888888884 332222211 1111 1122222 122 221 1 1 336667778999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHhHhhhccCchhHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAVM-GLSQFYSITLVGLVCLFYSTIGGIKAVILTDVF 186 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~-gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~i 186 (371)
..+.+..++..+..+.....+....+..+..+- .+|....+++.+++.+.-+..=-++...+...+
T Consensus 133 ~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~i 199 (473)
T PLN03074 133 YWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 199 (473)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHH
Confidence 888888777777777777777777666555442 245444444444444444444446666654433
No 110
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=64.60 E-value=1.6e+02 Score=29.54 Aligned_cols=64 Identities=9% Similarity=-0.136 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCcHHHHHHH----HhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 88 VLATPIVAHIYLPVFFKLG-AVSVYEYLEK----RFGSATRLAASLAFTVQMVLYMGIALYAPAIALEA 151 (371)
Q Consensus 88 ~~~~~l~~~~~~~~~rr~~-~~Ti~d~l~~----Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~ 151 (371)
.+.....++.++..-.+.. .-...+|.++ |+|+....+......+......+.+..+.+..+..
T Consensus 57 gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~ 125 (482)
T TIGR00907 57 GAGSICIALSLAELSSAYPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILG 125 (482)
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666655542 2345555554 45555566666666666655555555555555543
No 111
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=64.21 E-value=9.1 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCcccCcchh
Q psy3961 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEY 40 (371)
Q Consensus 8 ~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df 40 (371)
.+....++.+++.+++.+|. +++|++++.||.
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~-~~~~~k~~~e~a 41 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWA-YRPRNKKRFEEA 41 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcccchhhHHHH
Confidence 44555566666667777776 445555666654
No 112
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=57.14 E-value=1.8e+02 Score=27.71 Aligned_cols=66 Identities=18% Similarity=0.319 Sum_probs=35.3
Q ss_pred HhCChhHHHHHHHHHHHhHhhhccCchhHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhhh
Q psy3961 152 VMGLSQFYSITLVGLVCLFYSTIGGIKAVIL------TDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHR 218 (371)
Q Consensus 152 ~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~------td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~~~ 218 (371)
..|..+.......+.+..+-+-+-..+.... ..-.+.++++.++.. ..-++.+.|..+.+.+.+.+
T Consensus 219 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~l~~tG~~~~la~~l~~ 290 (351)
T PF03600_consen 219 VSGLVPIWIALLIGALLALLTNCKDLKEAYRVLNSGASIDWNTLLFFAGLFI-FVGALSNTGAFEALADWLLS 290 (351)
T ss_pred HhccCcHHHHHHHHHHHHHHHhcccchhhhHHHHhhccchHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHH
Confidence 4555444444444444444444555555544 444556666555544 44556777766666665543
No 113
>KOG1286|consensus
Probab=55.66 E-value=19 Score=37.17 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=94.9
Q ss_pred cCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHhC
Q psy3961 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINIS-YVLATPIVAHIYLPVFFKLGA--VSVYEYLEKRFG 119 (371)
Q Consensus 43 agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~-~~~~~~l~~~~~~~~~rr~~~--~Ti~d~l~~Ryg 119 (371)
=.|+++++-+.+.-+++.+|++-++|.....++.|-.+...... .....+....-++..-=|... -+..-|-.+-.|
T Consensus 28 lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~ 107 (554)
T KOG1286|consen 28 LKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVG 107 (554)
T ss_pred hhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeC
Confidence 36889999999988999999999999888888888766532111 112333333344443333322 123334444457
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCh--hHHHHHHHHHHHhHh---hhccCchhHHHHH
Q psy3961 120 SATRLAASLAFTVQMVLYMGIALYAPAIALEAVM----------GLS--QFYSITLVGLVCLFY---STIGGIKAVILTD 184 (371)
Q Consensus 120 ~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~----------gi~--~~~~~~i~~~i~~~Y---t~~GGl~av~~td 184 (371)
+......+...++..+.-.+.|..+.+..++..+ +.| .+.......++++.. -..||.+=+..+.
T Consensus 108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~ 187 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFN 187 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHH
Confidence 8888999999999999999999999999999875 332 233333333333222 2337777777665
Q ss_pred HHHHHH
Q psy3961 185 VFQSIL 190 (371)
Q Consensus 185 ~iQ~~~ 190 (371)
.+=.++
T Consensus 188 kvl~~v 193 (554)
T KOG1286|consen 188 KILTAV 193 (554)
T ss_pred HHHHHH
Confidence 554443
No 114
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=48.15 E-value=15 Score=29.97 Aligned_cols=20 Identities=15% Similarity=0.138 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q psy3961 8 VDYAVFILMLVISGAIGIYY 27 (371)
Q Consensus 8 ~~~~i~~~yl~~~l~ig~~~ 27 (371)
+-++++++.+++++..+...
T Consensus 3 ~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHH
Confidence 33455555554444444443
No 115
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=44.21 E-value=1.2e+02 Score=30.35 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhcc
Q psy3961 110 VYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIG 175 (371)
Q Consensus 110 i~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~G 175 (371)
+....++.+|+..+.+.+++..+.+..-......+.+..++..+++++...+++.+++..+-+-.|
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhH
Confidence 345678888999999999998888888888889999999999988999999999888888877776
No 116
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=43.16 E-value=1e+02 Score=24.09 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=20.3
Q ss_pred cCcchhhhcCCCCChHHHHHHHHhhhhhH
Q psy3961 35 KTNNEYLFGNRNQSLIPVAFSLMASFMSA 63 (371)
Q Consensus 35 ~~~~df~~agr~l~~~~~~~s~~at~~s~ 63 (371)
+..+.|-.+||+-+++-++..-.++..+-
T Consensus 33 ~r~dAF~AadK~tK~~Wl~Ilg~a~l~~~ 61 (100)
T PF10724_consen 33 RRADAFTAADKRTKPFWLAILGVAALVGL 61 (100)
T ss_pred CCHhhhHhcccccchHHHHHHHHHHHHHH
Confidence 34678888899877777777666665543
No 117
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=40.52 E-value=2.4e+02 Score=27.79 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q psy3961 110 VYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLS 156 (371)
Q Consensus 110 i~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~ 156 (371)
..|.+|..+|+..+.+.++-.+..-........++...+++.++|++
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~ 328 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWR 328 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67789999999888888877776666666667778888899999865
No 118
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=37.58 E-value=47 Score=22.15 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcccCcc
Q psy3961 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNN 38 (371)
Q Consensus 9 ~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~ 38 (371)
|...++..+++.+++-+|. ++.|+++..|
T Consensus 12 ~~~~l~~~~~~Figiv~wa-~~p~~k~~f~ 40 (48)
T cd01324 12 DSWGLLYLALFFLGVVVWA-FRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCcchhHH
Confidence 4455555556667777775 3333334333
No 119
>PRK00701 manganese transport protein MntH; Reviewed
Probab=36.08 E-value=4.6e+02 Score=26.25 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhhhhHHHHhhhhHHHHhhC-----------hHHH-H-HHHHHHHHHHHHH---HHHHHHHHhc------C
Q psy3961 49 LIPVAFSLMASFMSAITLMGLSAEIVTYG-----------TQFV-V-INISYVLATPIVA---HIYLPVFFKL------G 106 (371)
Q Consensus 49 ~~~~~~s~~at~~s~~t~~g~~~~~y~~G-----------~~~~-~-~~~~~~~~~~l~~---~~~~~~~rr~------~ 106 (371)
......+++++.+..+.++-.++...+.+ +... + ..++..+..++-. ...+-.++.. +
T Consensus 213 ~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~l~~~r~Dt~~g~~i~~li~~ai~v~~A~~l~~~g~~~~~~ 292 (439)
T PRK00701 213 ALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVAD 292 (439)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCC
Confidence 35667788888888887776655553322 1000 1 0122222222111 1222333322 2
Q ss_pred CCcHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhH-----HHHHHHHHHHhH-hhhcc----C
Q psy3961 107 AVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQF-----YSITLVGLVCLF-YSTIG----G 176 (371)
Q Consensus 107 ~~Ti~d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~~-----~~~~i~~~i~~~-Yt~~G----G 176 (371)
.....|-+|..+|+..+.+.++-.+..-..-......+...+++.++|++.. .......++..+ ....| =
T Consensus 293 ~~~~a~~L~p~~G~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p 372 (439)
T PRK00701 293 IEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDP 372 (439)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3346778888999877766666544443333444555666677888776421 111111122222 22223 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 177 IKAVILTDVFQSILMYAAIFAVIIV 201 (371)
Q Consensus 177 l~av~~td~iQ~~~~~~~~~vi~~~ 201 (371)
.+-..++.++|++++-...+.+...
T Consensus 373 ~~lli~aqv~~~i~LP~~~~~ll~l 397 (439)
T PRK00701 373 TRLLVLSQVVLSFGLPFALIPLLLF 397 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777765554444433
No 120
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=31.90 E-value=59 Score=23.62 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcccCcch
Q psy3961 11 AVFILMLVISGAIGIYYRFSGGKQKTNNE 39 (371)
Q Consensus 11 ~i~~~yl~~~l~ig~~~~~~~~~~~~~~d 39 (371)
..+.+.++..+|++++. .+|++|+.+|
T Consensus 16 s~i~V~~~~~~wi~~Ra--~~~~DKT~~e 42 (72)
T PF13268_consen 16 SSILVLLVSGIWILWRA--LRKKDKTAKE 42 (72)
T ss_pred HHHHHHHHHHHHHHHHH--HHcCCCcHHH
Confidence 34455556677888765 4556666544
No 121
>KOG1291|consensus
Probab=28.51 E-value=6.4e+02 Score=25.60 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=65.0
Q ss_pred HhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH---HHHHHHhCCchhhHHHHHHHHHHHHHHHHHH
Q psy3961 66 LMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVY---EYLEKRFGSATRLAASLAFTVQMVLYMGIAL 142 (371)
Q Consensus 66 ~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~---d~l~~Ryg~~~~~~~~~~~ii~~~~~~~~q~ 142 (371)
+-+--+.+.++|..-+|...-..+. +++.-+.--|.+..|-- |.=++.|.+..|....+..=+..+.-=..|.
T Consensus 48 ~etdlqaGA~~~YkLLwilL~a~~~----alllQ~LaARLGvVTG~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEV 123 (503)
T KOG1291|consen 48 IETDLQAGARAGYKLLWILLLANFM----ALLLQRLAARLGVVTGKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEV 123 (503)
T ss_pred chhhhhcchhhchhHHHHHHHHHHH----HHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHH
Confidence 3344455566666666643322222 12222233377877754 5555556677787777776677777777888
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHh
Q psy3961 143 YAPAIALEAVMGLSQFYSITLVGLVCL 169 (371)
Q Consensus 143 ~~~~~~l~~~~gi~~~~~~~i~~~i~~ 169 (371)
.|.+..++.++++|.+.++++..+=+.
T Consensus 124 IGTAiAlniL~~IPL~~GVliTilD~f 150 (503)
T KOG1291|consen 124 IGTAIALNILSNIPLWAGVLITILDTF 150 (503)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999999999999988764333
No 122
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.70 E-value=81 Score=25.61 Aligned_cols=26 Identities=19% Similarity=0.071 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy3961 8 VDYAVFILMLVISGAIGIYYRFSGGK 33 (371)
Q Consensus 8 ~~~~i~~~yl~~~l~ig~~~~~~~~~ 33 (371)
+-+.+++..+.+++.+.+..+|++||
T Consensus 69 Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444455555555443333
No 123
>PRK09877 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
Probab=26.97 E-value=3.7e+02 Score=22.40 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=18.7
Q ss_pred HHHHhcCCCcHHHHHHHHhCCchhhHHHHHH
Q psy3961 100 PVFFKLGAVSVYEYLEKRFGSATRLAASLAF 130 (371)
Q Consensus 100 ~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ 130 (371)
+.--|.|.+---|++.+|.+++.|....++.
T Consensus 54 ~~~~~~~~Hi~Vd~l~~~lp~~~~~~l~~l~ 84 (157)
T PRK09877 54 IVAFMDNAHVQVTFLVEKLSPANQRRVSLLT 84 (157)
T ss_pred HHHHhcCCeeeeehHHHhCCHHHHHHHHHHH
Confidence 4444566666667788888766555444433
No 124
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=24.77 E-value=7.2e+02 Score=24.96 Aligned_cols=158 Identities=12% Similarity=0.063 Sum_probs=75.5
Q ss_pred HHHHHhhhhhHHHHhhhhHHHHhhChHHHHHH-H--HHHHHHHHH--HHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHH
Q psy3961 53 AFSLMASFMSAITLMGLSAEIVTYGTQFVVIN-I--SYVLATPIV--AHIYLPVFFKLGAVSVYEYLEKRFGSATRLAAS 127 (371)
Q Consensus 53 ~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~-~--~~~~~~~l~--~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~ 127 (371)
.++..++.+|-+.+--.|-.++++|-++.... + ...++.+++ =+.+.|+.|+....+..+.-++|..+..+.+--
T Consensus 15 ILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~G~~gv 94 (439)
T COG0733 15 ILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGV 94 (439)
T ss_pred HHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhhhhHHH
Confidence 34566778888888889999999988764321 1 112222221 122223333222222222222233333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-Ch------------------hHHHHHHHHHHHhHhhhccCch-hHHHHHHHH
Q psy3961 128 LAFTVQMVLYMGIALYAPAIALEAVMG-LS------------------QFYSITLVGLVCLFYSTIGGIK-AVILTDVFQ 187 (371)
Q Consensus 128 ~~~ii~~~~~~~~q~~~~~~~l~~~~g-i~------------------~~~~~~i~~~i~~~Yt~~GGl~-av~~td~iQ 187 (371)
....+....|..+.=-.+.++...++| ++ ....-.+...+...++...|.+ ++=..+.+-
T Consensus 95 ~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~~kim 174 (439)
T COG0733 95 LGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIEKANKIM 174 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Confidence 222222333443333334444444432 11 1122224444455555666654 477777777
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHH
Q psy3961 188 SILMYAAIFAVIIVAAINVGGIG 210 (371)
Q Consensus 188 ~~~~~~~~~vi~~~~~~~~gG~~ 210 (371)
.-.+++..+++.+.++...|-.+
T Consensus 175 MP~Lfvl~i~Lvi~~~tLpGA~~ 197 (439)
T COG0733 175 MPLLFVLFIILVIRAVTLPGAME 197 (439)
T ss_pred HHHHHHHHHHHHHHHHcCccHHH
Confidence 77777777777777666554333
No 125
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=24.51 E-value=4.1e+02 Score=22.08 Aligned_cols=97 Identities=9% Similarity=0.082 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCc-ccC---cchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHH
Q psy3961 9 DYAVFILMLVISGAIGIYYRFSGGK-QKT---NNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVIN 84 (371)
Q Consensus 9 ~~~i~~~yl~~~l~ig~~~~~~~~~-~~~---~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~ 84 (371)
.++.++..+..++.+--.+.+..+. +++ .+.+-...|++--.+..=++..|+.++...+...+.....+....+.=
T Consensus 12 HIiavi~W~aGl~yLprl~v~~~~~~~~~~~~~~~l~~m~rrl~~~I~~PAmilt~~~G~~ll~~~~~~~~~~~~Wl~vK 91 (147)
T PF03653_consen 12 HIIAVISWMAGLFYLPRLFVYHAEASDGSEEFYERLAIMERRLYRIIMTPAMILTWISGLLLLFLNPGLGWFSSPWLHVK 91 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhcCcHHHHH
Confidence 4455555555555443222222222 222 233444677777777777888888888554443331111112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy3961 85 ISYVLATPIVAHIYLPVFFKL 105 (371)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~rr~ 105 (371)
+...+.+...-....+..||.
T Consensus 92 L~~V~~L~~~H~~~~~~~k~~ 112 (147)
T PF03653_consen 92 LVLVLLLVAYHGWCGRYLKRL 112 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455556654
No 126
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=23.69 E-value=7.4e+02 Score=24.70 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhhhhhHHHHhhhhHHHHh-----------------hC-hHHHHHHHHHHHHHHHHHHHHHHHH---HhcC
Q psy3961 48 SLIPVAFSLMASFMSAITLMGLSAEIVT-----------------YG-TQFVVINISYVLATPIVAHIYLPVF---FKLG 106 (371)
Q Consensus 48 ~~~~~~~s~~at~~s~~t~~g~~~~~y~-----------------~G-~~~~~~~~~~~~~~~l~~~~~~~~~---rr~~ 106 (371)
+++....+.++-.++-.+.+-.|=-.+. .. +...|. +.+....+ ..+++.|.. .+.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~vlllP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~iyw~~~i-l~w~ilPf~~~y~es~ 106 (471)
T PF04791_consen 29 SWFVKIIVFLGLTLSFSIVLLLPLDVANNEILSSYDSSYPGQWLNTSLMEVLWY-IIYWLTFI-LTWLILPFAQFYYESG 106 (471)
T ss_pred chhHHHHHHHHHHHHHHHHHhcChhhhcccccccCCCCCCcccCCchHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHcC
Confidence 5555666666666666666555554444 11 122343 33443333 335556754 4566
Q ss_pred CCcHHHH-HHHHhCCch
Q psy3961 107 AVSVYEY-LEKRFGSAT 122 (371)
Q Consensus 107 ~~Ti~d~-l~~Ryg~~~ 122 (371)
..|..+= +.+|.-+..
T Consensus 107 ~~~~~~k~l~~~l~~n~ 123 (471)
T PF04791_consen 107 DFTPKGKGLKSSLKENL 123 (471)
T ss_pred CcccccccHHHHHHHHH
Confidence 6665554 555554433
No 127
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=23.19 E-value=7.7e+02 Score=24.74 Aligned_cols=100 Identities=10% Similarity=0.051 Sum_probs=51.1
Q ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHhCC-chhhHHHHHHHHHHHH-HHHHHHHHH---
Q psy3961 72 EIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLG-AVSVYEYLEKRFGS-ATRLAASLAFTVQMVL-YMGIALYAP--- 145 (371)
Q Consensus 72 ~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~-~~Ti~d~l~~Ryg~-~~~~~~~~~~ii~~~~-~~~~q~~~~--- 145 (371)
..|..|++...- ...-.+.++-.+++.+++.+ +.++.|.+-+++|+ +......+...+..++ +.=+.+...
T Consensus 48 ~~i~~G~g~~l~---si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~~~a~~l~~~il~ipvF~dv~fvil~Pi 124 (438)
T PRK14984 48 GSIKAGVGGTLG---SLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFYEVGFVLMLPL 124 (438)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456677765432 22223344556678888875 67899999999995 4554433333332222 221222222
Q ss_pred HHHHHHHhCChhHHHHHHH-HHHHhHhhhc
Q psy3961 146 AIALEAVMGLSQFYSITLV-GLVCLFYSTI 174 (371)
Q Consensus 146 ~~~l~~~~gi~~~~~~~i~-~~i~~~Yt~~ 174 (371)
...+..-.|.|.....+-. +......+..
T Consensus 125 ~~~lak~~~~~~~~~~~~l~~gl~~th~~v 154 (438)
T PRK14984 125 VFTIAASANIPLLYVGVPMAAALSVTHGFL 154 (438)
T ss_pred HHHHHHHhCcChHHHHHHHHHHHHHHHhCC
Confidence 2333334677765433322 2334445443
No 128
>KOG3761|consensus
Probab=22.79 E-value=21 Score=34.11 Aligned_cols=30 Identities=20% Similarity=-0.157 Sum_probs=23.3
Q ss_pred hhcccChhhhHHHhccCChHHhhccccccC
Q psy3961 250 SLYGINQMQVQRYLTMKDYKTAYLRPNVNN 279 (371)
Q Consensus 250 ~~~~~~q~~~qr~~saks~k~ar~~~~~~~ 279 (371)
+....+|.++||++|.|+.+-|+.-.+++.
T Consensus 253 ~ggipwq~yfqrvlss~sa~~aq~lsfla~ 282 (591)
T KOG3761|consen 253 FGGIPWQAYFQRVLSSKSAHGAQTLSFLAA 282 (591)
T ss_pred hcCCcHHHHHHHHHhccccchhHHHHHHHH
Confidence 344568999999999999999886555543
No 129
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=22.29 E-value=2.4e+02 Score=18.77 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=15.6
Q ss_pred HHHhcCCCcHHHHHHHHhCC
Q psy3961 101 VFFKLGAVSVYEYLEKRFGS 120 (371)
Q Consensus 101 ~~rr~~~~Ti~d~l~~Ryg~ 120 (371)
+-.|-+..|..|++++||++
T Consensus 26 R~~rp~g~~L~eLl~~k~~~ 45 (47)
T PF11654_consen 26 REGRPEGHSLNELLRRKWNK 45 (47)
T ss_pred hccCCCCCcHHHHHHHHhhc
Confidence 33345688999999999975
No 130
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=22.23 E-value=1.9e+02 Score=21.46 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=22.2
Q ss_pred HhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3961 57 MASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL 105 (371)
Q Consensus 57 ~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~ 105 (371)
++..+...++.|.| ++...-.-|..+.++++.++++.+..|.
T Consensus 28 f~~~Ln~~~~~GfP-------lgfw~aaQGsi~~fviLi~~Ya~~m~rl 69 (77)
T TIGR03647 28 FADELNSFTFFGFP-------LGFWFAQQGSIYVFVVLIFVYAWRMNRL 69 (77)
T ss_pred HHHHHcCCeeCCCC-------hHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555 2222224555556666666777766554
No 131
>PRK01741 cell division protein ZipA; Provisional
Probab=20.38 E-value=80 Score=30.18 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=18.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhh
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYR 28 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~ 28 (371)
-+|++-+++=++-++++++-|+|..
T Consensus 2 dLn~iliILg~lal~~Lv~hgiWsn 26 (332)
T PRK01741 2 DLNTILIILGILALVALVAHGIWSN 26 (332)
T ss_pred cceehHHHHHHHHHHHHHHhhhhhh
Confidence 4677766666677778889999873
Done!