Query psy3961
Match_columns 371
No_of_seqs 168 out of 1925
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:46:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xq2_A Sodium/glucose cotransp 100.0 9E-44 3.1E-48 364.5 28.8 301 2-363 5-311 (593)
2 3dh4_A Sodium/glucose cotransp 100.0 1.2E-41 4.1E-46 344.4 22.8 277 29-366 4-285 (530)
3 2jln_A MHP1; hydantoin, transp 98.8 7.5E-07 2.6E-11 89.0 21.1 160 44-207 24-191 (501)
4 3l1l_A Arginine/agmatine antip 98.1 0.00056 1.9E-08 66.5 22.5 153 44-197 7-164 (445)
5 3gia_A Uncharacterized protein 97.8 0.013 4.4E-07 56.8 25.7 161 44-204 5-171 (444)
6 3dh4_A Sodium/glucose cotransp 96.6 0.0016 5.5E-08 65.2 4.8 36 245-280 228-263 (530)
7 2xq2_A Sodium/glucose cotransp 95.8 0.0037 1.3E-07 63.5 2.7 44 236-279 247-291 (593)
8 4djk_A Probable glutamate/gamm 95.0 2.9 9.9E-05 40.7 22.0 142 44-189 10-161 (511)
9 2wsw_A BCCT family betaine/car 93.2 6.9 0.00023 38.5 24.9 186 4-199 55-279 (509)
10 4ain_A Glycine betaine transpo 93.0 2.5 8.4E-05 41.9 15.3 177 4-191 58-273 (539)
11 2zvv_Y Cyclin-dependent kinase 38.5 7.8 0.00027 20.9 0.3 17 31-47 3-19 (26)
12 2jwa_A Receptor tyrosine-prote 24.6 76 0.0026 19.9 3.2 9 19-27 27-35 (44)
No 1
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=100.00 E-value=9e-44 Score=364.48 Aligned_cols=301 Identities=23% Similarity=0.383 Sum_probs=229.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhhhcCCc-ccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHH
Q psy3961 2 EKSFGIVDYAVFILMLVISGAIGIYYRFSGGK-QKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQF 80 (371)
Q Consensus 2 ~~~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~-~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~ 80 (371)
+++|+++|++++++|+++++++|+|.+|++|+ ++|.|||++|||++|++..++|+.||++|+++++|.+|.+|++|+++
T Consensus 5 ~~~~~~~d~~i~~~yl~~~~~ig~~~~r~~~~~~~~~~dy~laGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~ 84 (593)
T 2xq2_A 5 EHGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAI 84 (593)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTCC-------------------CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGG
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHhcCCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHH
Confidence 35799999999999999999999987432222 35789999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhHH
Q psy3961 81 VVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFY 159 (371)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~~~~~~~~~ii-~~~~~~~~q~~~~~~~l~~~~gi~~~~ 159 (371)
.++.+++.++.++.+++++|++||.|..|++||+|+|||++.|.+.+++.++ ..+.+++.|+++.+.+++.++|+|++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~~~ 164 (593)
T 2xq2_A 85 ASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMY 164 (593)
T ss_dssp GHHHHHHHHHHHHHHHTHHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence 8888888888888888999999999999999999999999999999888775 456789999999999999999999999
Q ss_pred HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhh---hhCCccccccCCCCCccccc
Q psy3961 160 SITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIA---HRNDRLEFFNLSPDPTTRHS 236 (371)
Q Consensus 160 ~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~---~~~~~~~~~~~~~~~~~~~~ 236 (371)
++++.++++++||..||+|+++|||.+|+++++++.+++.+.++.+.||++++.+.. .+..+ +.++...++.+ +
T Consensus 165 ~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~ 241 (593)
T 2xq2_A 165 SILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAP-GHFEMILDQSN--P 241 (593)
T ss_dssp HHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCG-GGSCSSCCSSS--G
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhCh-hhcccccCCCC--c
Confidence 999999999999999999999999999999999999999888888888766554422 21111 11111100000 0
Q ss_pred chhhHHhhHHHHhhhcccChhhhHHHhccCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHH-HHHHHHHH
Q psy3961 237 WFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIG-GIFTYCSL 315 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 315 (371)
.+. +..++..++| ..+....+
T Consensus 242 ~~~----------------------------------------------------------~~~~~~~~~g~~~~~~~~~ 263 (593)
T 2xq2_A 242 QYM----------------------------------------------------------NLPGIAVLIGGLWVANLYY 263 (593)
T ss_dssp GGG----------------------------------------------------------TSCTTHHHHSTHHHHHHHH
T ss_pred ccc----------------------------------------------------------cchHHHHHHHHHHHHHHHh
Confidence 000 0012233332 22345667
Q ss_pred hccchHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3961 316 YGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVSTCFSGLAIYAS 363 (371)
Q Consensus 316 ~~~~q~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 363 (371)
++.||..+||++++||+|++||+.++++....++.+...++|+.+++.
T Consensus 264 ~~~~q~~~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~ 311 (593)
T 2xq2_A 264 WGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVI 311 (593)
T ss_dssp HTTTCSHHHHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHH
T ss_pred hcCChHHHHHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999988
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.2e-41 Score=344.41 Aligned_cols=277 Identities=22% Similarity=0.347 Sum_probs=219.8
Q ss_pred hcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3961 29 FSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAV 108 (371)
Q Consensus 29 ~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~ 108 (371)
+|+||++|.|||++|||++|++.+++|+.||++|+++++|.||.+|++|+++.++.+...++..+.+++++|++||.|..
T Consensus 4 ~~~~~~~~~~dy~laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 83 (530)
T 3dh4_A 4 XXXXXXXXXXXXXXAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIY 83 (530)
T ss_dssp HHHHHHHHHHHHHCCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTCC
T ss_pred ccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34567889999999999999999999999999999999999999999999988777777788888888899999999999
Q ss_pred cHHHHHHHHhCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhHhhhccCchhHHHHHHHH
Q psy3961 109 SVYEYLEKRFGSATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQ 187 (371)
Q Consensus 109 Ti~d~l~~Ryg~~~~~~~~~~~ii-~~~~~~~~q~~~~~~~l~~~~gi~~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ 187 (371)
|+|||+|+|||++.|.+.+++.++ ....+++.|+++.+.+++.++|+|++.++++.++++++||.+||+|+|+|||.+|
T Consensus 84 T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ 163 (530)
T 3dh4_A 84 TIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 163 (530)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999999888765 4556889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHhh---hhCCccccccCCCCCcccccchhhHHhhHHHHhhhcccChhhhHHHhc
Q psy3961 188 SILMYAAIFAVIIVAAINVGGIGEIWNIA---HRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLT 264 (371)
Q Consensus 188 ~~~~~~~~~vi~~~~~~~~gG~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qr~~s 264 (371)
+++|+++.+++.+.++.+.||.+++.+.. .+..+ +.++...++.+. ++...
T Consensus 164 ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~------------------------ 217 (530)
T 3dh4_A 164 VFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAP-GHFEMILDQSNP-QYMNL------------------------ 217 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCG-GGGCSSCCSSSS-GGGGS------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCc-hhcccccCCCCc-ccccc------------------------
Confidence 99999999998888888887654443322 22111 111111000000 00000
Q ss_pred cCChHHhhccccccCCccceeeeeeccCCCCCCCCchHHHHHH-HHHHHHHHhccchHHHHHHhcCCChHHHHHHHHHHH
Q psy3961 265 MKDYKTAYLRPNVNNPTSNIFLFCFSLSPDPTTRHSWFTLIIG-GIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSW 343 (371)
Q Consensus 265 aks~k~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~q~~~qr~~~~~~~~~~~~~~~~~~ 343 (371)
+.+ ..+++ ..+....+++.||+.+||++++||+|++||+.++++
T Consensus 218 ----------------------------------~~~-~~~i~~~~~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~ 262 (530)
T 3dh4_A 218 ----------------------------------PGI-AVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAA 262 (530)
T ss_dssp ----------------------------------CTT-HHHHSTHHHHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred ----------------------------------chH-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001 11122 123466778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy3961 344 PLLTLLSVSTCFSGLAIYASYHN 366 (371)
Q Consensus 344 ~~~~~~~~~~~~~G~~~~~~y~~ 366 (371)
.+.+++.+...++|+++++.|++
T Consensus 263 ~~~~~~~~~~~~~Gl~a~~~~~~ 285 (530)
T 3dh4_A 263 FLKLIVPFLVVLPGIAAYVITSD 285 (530)
T ss_dssp HHHHHGGGTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999989999999999999954
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.75 E-value=7.5e-07 Score=89.02 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=119.0
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCcHHHHHHHHhCC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYL---PVFFKLGAVSVYEYLEKRFGS 120 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~---~~~rr~~~~Ti~d~l~~Ryg~ 120 (371)
+|+.+++-.+..-++..++..++.-- +.... |++..+..++..++.++...+.+ ..-.|.+ .+.+++.|.+||+
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~G-a~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G-l~~~v~~R~~FG~ 100 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAA-GQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG-INFTVAARMPFGI 100 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHH-HHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC-CCHHHHTTTTSCT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC-CChhhhhHhhcch
Confidence 57788887776666666665555321 22233 88776666666666665544433 3344666 4489999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCh-hHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAVM----GLS-QFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAI 195 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~----gi~-~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~ 195 (371)
+...+.+++..+..++|.++|....+..++.++ |++ .+.+.++.+++.++.+ +.|++.+.+.+.++..++++.+
T Consensus 101 ~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~~~i~~ 179 (501)
T 2jln_A 101 RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFASPVLLAMG 179 (501)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988775 887 5777777777665555 7889999999999999998888
Q ss_pred HHHHHHHHHHcC
Q psy3961 196 FAVIIVAAINVG 207 (371)
Q Consensus 196 ~vi~~~~~~~~g 207 (371)
+++.+..+.+.|
T Consensus 180 i~~~~~~l~~~g 191 (501)
T 2jln_A 180 VYMVYLMLDGAD 191 (501)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 877777776654
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.09 E-value=0.00056 Score=66.53 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=103.3
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGA-VSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~-~Ti~d~l~~Ryg~~~ 122 (371)
.|+++.+.......++.+|++.+.. |+...+.|-.+.+..+...+.....++.++..-++... -...+|.++.+|+..
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~-~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 85 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLL-PANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFL 85 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHH-HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhh-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChH
Confidence 4789999999888899999888776 44455667655443333344445555666776667643 479999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-h---hHHHHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMGL-S---QFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 123 ~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi-~---~~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
..+.+....+......+.+..+.+..++..++. + +.....+...+...+....|.|.....+.+-..+.++.+++
T Consensus 86 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~ 164 (445)
T 3l1l_A 86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVG 164 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 999988888877777777777777777665542 1 12223333444556677788888877766655554444433
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.77 E-value=0.013 Score=56.75 Aligned_cols=161 Identities=15% Similarity=0.072 Sum_probs=101.2
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHhCCch
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLG-AVSVYEYLEKRFGSAT 122 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~-~~Ti~d~l~~Ryg~~~ 122 (371)
.|+++.+.......++.++++.+..........|.+..+..+...+.....++.++..-++.. .-...++.++.+|++.
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~~ 84 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNI 84 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSSH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcch
Confidence 478999988888888888887666554444445554332222233334445556666666654 3468899999999862
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh--HH--HHHHHHHHHhHhhhccCchhHHHHHHHHHHHHHHHHHH
Q psy3961 123 -RLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQ--FY--SITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFA 197 (371)
Q Consensus 123 -~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~gi~~--~~--~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~~~~~~~~v 197 (371)
....+....+......+.+..+.+..++..++.+. +. .+.+...+...+....|.|.....+.+-..+.++..++
T Consensus 85 ~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~ 164 (444)
T 3gia_A 85 ITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGL 164 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666667778888888888888876432 22 22344444555667778888877776666665555555
Q ss_pred HHHHHHH
Q psy3961 198 VIIVAAI 204 (371)
Q Consensus 198 i~~~~~~ 204 (371)
+.+..+.
T Consensus 165 ~ii~~~~ 171 (444)
T 3gia_A 165 FIFAGLI 171 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.57 E-value=0.0016 Score=65.25 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=30.7
Q ss_pred HHHHhhhcccChhhhHHHhccCChHHhhccccccCC
Q psy3961 245 IFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNP 280 (371)
Q Consensus 245 ~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~~ 280 (371)
.+..+++++.||+++||++++||+|++||+..++..
T Consensus 228 ~~~~l~~~g~~q~i~qR~laaks~k~ar~~~~~~~~ 263 (530)
T 3dh4_A 228 WVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAF 263 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567889999999999999999999999987543
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=95.78 E-value=0.0037 Score=63.54 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=34.5
Q ss_pred cchhhHHh-hHHHHhhhcccChhhhHHHhccCChHHhhccccccC
Q psy3961 236 SWFTLIIG-GIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNN 279 (371)
Q Consensus 236 ~~~~~~~~-~~~~~~~~~~~~q~~~qr~~saks~k~ar~~~~~~~ 279 (371)
+++...++ ..+..+.+++.||+++||++++||+|++||+..++.
T Consensus 247 ~~~~~~~g~~~~~~~~~~~~~q~~~qR~laaks~k~ar~~~~~~~ 291 (593)
T 2xq2_A 247 PGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAA 291 (593)
T ss_dssp CTTHHHHSTHHHHHHHHHTTTCSHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHhheeCCHHHHHHHHHHHH
Confidence 34555554 334566788999999999999999999999998754
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=94.99 E-value=2.9 Score=40.72 Aligned_cols=142 Identities=16% Similarity=0.086 Sum_probs=85.3
Q ss_pred CCCCChHHHHHHHHhhhhhHHHHhhhhHHHHhhChHHHHH-HHHHHHHHHHHHHHHHHHHH--hcCCCcHHHHHHHHhCC
Q psy3961 44 NRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVI-NISYVLATPIVAHIYLPVFF--KLGAVSVYEYLEKRFGS 120 (371)
Q Consensus 44 gr~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~G~~~~~~-~~~~~~~~~l~~~~~~~~~r--r~~~~Ti~d~l~~Ryg~ 120 (371)
.|+++.+-...-.+++.++ +.+.++ ....|.....+ .++..+.....++.++..-. +...-...++.++-+|+
T Consensus 10 ~r~l~~~~~~~l~~~~~ig---~~~~~~-~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P~GG~y~~~~~~~g~ 85 (511)
T 4djk_A 10 AKQLTLLGFFAITASMVMA---VYEYPT-FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGP 85 (511)
T ss_dssp --CCCHHHHHHHTGGGGCC---GGGHHH-HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC---CHHHHHHHHHCH
T ss_pred CccccHHHHHHHHHHHHHh---hchhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChhhhHHhhcCc
Confidence 4788988887766666664 344444 34566655433 33333333335566666666 65544678899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---Ch--h--HHHHHHHHHHHhHhhhccCchhHHHHHHHHHH
Q psy3961 121 ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMG---LS--Q--FYSITLVGLVCLFYSTIGGIKAVILTDVFQSI 189 (371)
Q Consensus 121 ~~~~~~~~~~ii~~~~~~~~q~~~~~~~l~~~~g---i~--~--~~~~~i~~~i~~~Yt~~GGl~av~~td~iQ~~ 189 (371)
+.+.+.+....+..+...+....+.+..++..++ .+ . ...+.+..++.....-+-|.|.....+.+=..
T Consensus 86 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 161 (511)
T 4djk_A 86 RWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFF 161 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9888888888888877777777777777765532 22 1 22333333444455666678877665544333
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=93.24 E-value=6.9 Score=38.46 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=89.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCcccCcchhhhcCCCCChHHHHHHHHhhhhhHH-HHhhhhHHHHhh------
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAI-TLMGLSAEIVTY------ 76 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~~~~~~df~~agr~l~~~~~~~s~~at~~s~~-t~~g~~~~~y~~------ 76 (371)
+++|........++++++.+++- ++.+-|-.+ +.-+.+.+--..-++++.++.+ .+.|.+|-.+.+
T Consensus 55 ~fgW~y~l~~~~~~~f~l~la~S-~~G~IrLG~------~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~ 127 (509)
T 2wsw_A 55 VWGWAFEWYMVIMFGGWFWLVFG-RYAKKRLGD------EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFG 127 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-TTTTCBSSS------SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTT
T ss_pred HhhHHHHHHHHHHHHHhheeEEc-ccCceeeCC------CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCC
Confidence 45555555666666666666652 122212221 1223566667777788888855 555666644422
Q ss_pred -----------ChHH--HHHHHHHHHHHHHHHHHHHHHHH-hc-CCCc----HHHHHH-HHhCCchhhHHHHHHH-----
Q psy3961 77 -----------GTQF--VVINISYVLATPIVAHIYLPVFF-KL-GAVS----VYEYLE-KRFGSATRLAASLAFT----- 131 (371)
Q Consensus 77 -----------G~~~--~~~~~~~~~~~~l~~~~~~~~~r-r~-~~~T----i~d~l~-~Ryg~~~~~~~~~~~i----- 131 (371)
.+.. .+|++-...-+.+.++.++...+ |+ +-.+ ..-+++ +|-+...+.+.=++.+
T Consensus 128 ~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~y~r~~~pl~iss~l~PllG~~r~~G~~G~~IDilav~at~~ 207 (509)
T 2wsw_A 128 MEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHVNGLFGTVVDNFYLVALIL 207 (509)
T ss_dssp CCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHHHTSCCCCCSGGGGCHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHcCCCCcchHHHhHhhcCCcccCCchhhhhHHHHHHHHHH
Confidence 1111 22222111122333444444322 32 2232 444666 5643333332222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhCChh----HHHHHHHHHHHhHhhhccCc-hhHHHHHHHHHHHHHHHHHHHH
Q psy3961 132 --VQMVLYMGIALYAPAIALEAVMGLSQ----FYSITLVGLVCLFYSTIGGI-KAVILTDVFQSILMYAAIFAVI 199 (371)
Q Consensus 132 --i~~~~~~~~q~~~~~~~l~~~~gi~~----~~~~~i~~~i~~~Yt~~GGl-~av~~td~iQ~~~~~~~~~vi~ 199 (371)
...++..+.|+. .-++.++|+|. ...+++...++..++..-|+ |++-+-.-++..+.+..++.++
T Consensus 208 G~atsLGlg~~qi~---~Gl~~lfGi~~~~~~qi~ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll~fvl 279 (509)
T 2wsw_A 208 AMGTSLGLATPLVT---ECIQYLFGIPHTLQLDAIIISCWILLNAICVAFGLQKGVKIASDVRTYLSFLMLGWVF 279 (509)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333444443 33566778773 23333333444456777888 8887777777766554443333
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=93.03 E-value=2.5 Score=41.87 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcCCc---ccCcchhhhcCCCCChHHHHHHHHhhhhhHHHH-hhhhHHHHhh---
Q psy3961 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGK---QKTNNEYLFGNRNQSLIPVAFSLMASFMSAITL-MGLSAEIVTY--- 76 (371)
Q Consensus 4 ~~~~~~~~i~~~yl~~~l~ig~~~~~~~~~---~~~~~df~~agr~l~~~~~~~s~~at~~s~~t~-~g~~~~~y~~--- 76 (371)
+++|........++++++.+++- ++.+-| +++.-|| +.+.-..-++++.++.+.+ .|.+|-.|.+
T Consensus 58 ~fgW~y~l~~~~~~~f~l~lafS-~~G~IrLG~~d~kPef-------S~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~p 129 (539)
T 4ain_A 58 NLGWAFILFGTVFVFFIVVIAAS-KFGTIRLGRIDEAPEF-------RTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNG 129 (539)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GGGSCBSSCTTCCCSS-------CHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHHHHHheec-CCCceecCCCCCCCCC-------cchHHHHHHHHHhhcchheeehhhhhHHHhcCC
Confidence 34555555555666666666552 122222 2344566 5555556667777775543 4555544332
Q ss_pred -----------ChHH--HHHHHHHHHHHHHHHHHHHHHH-HhcCCC----cHHHHHHHH--hCCc------hhhHHHHHH
Q psy3961 77 -----------GTQF--VVINISYVLATPIVAHIYLPVF-FKLGAV----SVYEYLEKR--FGSA------TRLAASLAF 130 (371)
Q Consensus 77 -----------G~~~--~~~~~~~~~~~~l~~~~~~~~~-rr~~~~----Ti~d~l~~R--yg~~------~~~~~~~~~ 130 (371)
.+.. .+|++-...-+.+.++.++... ||.+-. +..-++++| +|.. ...++.+..
T Consensus 130 P~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~~pl~iss~l~PllG~r~~~G~~G~~IDilav~atv~G 209 (539)
T 4ain_A 130 VPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGRKQLLSSAFVPLIGEKGAEGWLGKLIDILAIIATVFG 209 (539)
T ss_dssp CTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTCCCSCTTGGGHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCCCCCcHHHHhHhhcCCCccCCcchhhhHHHHHHHHHHH
Confidence 1221 2332222212334445555432 332222 355677877 4432 122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCh-h----HHHHHHHHHHHhHhhhccCc-hhHHHHHHHHHHHH
Q psy3961 131 TVQMVLYMGIALYAPAIALEAVMGLS-Q----FYSITLVGLVCLFYSTIGGI-KAVILTDVFQSILM 191 (371)
Q Consensus 131 ii~~~~~~~~q~~~~~~~l~~~~gi~-~----~~~~~i~~~i~~~Yt~~GGl-~av~~td~iQ~~~~ 191 (371)
+...++..+.|+. .-++.++|+| . ...+++...++...+..-|+ |++-+-.-++..+.
T Consensus 210 vatSLGlg~~Qi~---~Gl~~lfGi~~~~~~~qi~ii~vit~i~~~Sa~sGl~kGIk~LS~~N~~La 273 (539)
T 4ain_A 210 TACSLGLGALQIG---AGLSAANIIEDPSDWTIVGIVSVLTLAFIFSAISGVGKGIQYLSNANMVLA 273 (539)
T ss_dssp HHHHHHHHHHHHH---HHHHHHC--CCCSTTTTTHHHHHHHHHHHHHHHC---CCHHHHGGGHCCCC
T ss_pred HhhhHHHHHHHHH---HHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444444443 3355677877 2 33444444555556667777 77777766665543
No 11
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=38.48 E-value=7.8 Score=20.91 Aligned_cols=17 Identities=12% Similarity=0.306 Sum_probs=14.0
Q ss_pred CCcccCcchhhhcCCCC
Q psy3961 31 GGKQKTNNEYLFGNRNQ 47 (371)
Q Consensus 31 ~~~~~~~~df~~agr~l 47 (371)
+||+.+..||+-+.|++
T Consensus 3 KrkQTs~TDFYhsKRRl 19 (26)
T 2zvv_Y 3 KRRQTSMTDFYHSKRRL 19 (26)
T ss_pred cccccchhHHHhhhceE
Confidence 45788899999998874
No 12
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.60 E-value=76 Score=19.88 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.7
Q ss_pred HHHHHHHHh
Q psy3961 19 ISGAIGIYY 27 (371)
Q Consensus 19 ~~l~ig~~~ 27 (371)
+.+.+++|.
T Consensus 27 ~~l~~~~~~ 35 (44)
T 2jwa_A 27 LGVVFGILI 35 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhe
Confidence 344556665
Done!