Query psy3961
Match_columns 371
No_of_seqs 168 out of 1925
Neff 8.4
Searched_HMMs 13730
Date Fri Aug 16 21:47:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3961.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3961hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1si2a_ b.34.14.1 (A:) Eukaryo 7.7 54 0.0039 23.5 0.7 17 106-122 79-95 (126)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 7.7 31 0.0023 23.4 -0.6 20 20-39 32-51 (91)
3 d1xmec1 f.23.9.1 (C:2-34) Bact 5.4 2.4E+02 0.017 14.5 2.9 22 7-28 7-28 (33)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 4.8 2.5E+02 0.018 14.1 3.2 21 349-369 7-27 (30)
5 d1af7a1 a.58.1.1 (A:11-91) Che 4.8 2.1E+02 0.015 18.0 2.5 22 98-119 44-65 (81)
6 d1j2jb_ a.7.8.1 (B:) ADP-ribos 4.7 2.8E+02 0.021 15.4 2.5 17 322-338 10-26 (41)
7 d3dbya2 a.29.13.1 (A:126-260) 4.5 1.1E+02 0.0077 22.2 0.7 6 365-370 130-135 (135)
8 d1uj8a1 a.159.5.1 (A:13-76) Ir 3.4 1.9E+02 0.014 18.0 1.1 15 356-370 10-24 (64)
9 d1k0ma2 c.47.1.5 (A:6-91) Chlo 3.1 2.4E+02 0.018 18.0 1.6 14 107-120 72-85 (86)
10 d1pv7a_ f.38.1.2 (A:) Lactose 2.9 9.9E+02 0.072 17.9 7.5 86 45-140 5-92 (417)
No 1
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.69 E-value=54 Score=23.48 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhCCch
Q psy3961 106 GAVSVYEYLEKRFGSAT 122 (371)
Q Consensus 106 ~~~Ti~d~l~~Ryg~~~ 122 (371)
+-.|+.||++++||...
T Consensus 79 ~~iTV~~YFk~~Y~~~L 95 (126)
T d1si2a_ 79 VECTVAQYFKQKYNLQL 95 (126)
T ss_dssp CEEEHHHHHHHTSCCCC
T ss_pred eEEEHHHHHHHHcCccc
Confidence 34799999999998543
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.69 E-value=31 Score=23.36 Aligned_cols=20 Identities=0% Similarity=0.077 Sum_probs=7.8
Q ss_pred HHHHHHHhhhcCCcccCcch
Q psy3961 20 SGAIGIYYRFSGGKQKTNNE 39 (371)
Q Consensus 20 ~l~ig~~~~~~~~~~~~~~d 39 (371)
+.+.-.|..+|.|++++.++
T Consensus 32 V~~~~~~~~~ryR~~~~~~~ 51 (91)
T d1fftb2 32 AILMAVGFAWKYRASNKDAK 51 (91)
T ss_dssp HHHHHHTTTTTTTTSTTTCS
T ss_pred HHHHHHhhheeeeccCCccC
Confidence 33333443334444433333
No 3
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=5.37 E-value=2.4e+02 Score=14.52 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy3961 7 IVDYAVFILMLVISGAIGIYYR 28 (371)
Q Consensus 7 ~~~~~i~~~yl~~~l~ig~~~~ 28 (371)
....+.+....+++.|.|.|..
T Consensus 7 al~vi~il~l~ilvfw~gv~av 28 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLGVYAV 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667788888753
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.81 E-value=2.5e+02 Score=14.05 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q psy3961 349 LSVSTCFSGLAIYASYHNCDP 369 (371)
Q Consensus 349 ~~~~~~~~G~~~~~~y~~~~p 369 (371)
+...++++|+..++.+-...|
T Consensus 7 v~ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 7 VFIFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 445667888888887754444
No 5
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=4.77 E-value=2.1e+02 Score=17.97 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCcHHHHHHHHhC
Q psy3961 98 YLPVFFKLGAVSVYEYLEKRFG 119 (371)
Q Consensus 98 ~~~~~rr~~~~Ti~d~l~~Ryg 119 (371)
+.++.++.|..|..||++.--.
T Consensus 44 L~~rm~~~g~~s~~~Y~~~L~~ 65 (81)
T d1af7a1 44 LVRRLRALGLDDFGRYLSMLEA 65 (81)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHh
Confidence 4567778899999998876543
No 6
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.66 E-value=2.8e+02 Score=15.39 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.7
Q ss_pred HHHHHhcCCChHHHHHH
Q psy3961 322 QVQRYLTMKDYKTAVRS 338 (371)
Q Consensus 322 ~~qr~~~~~~~~~~~~~ 338 (371)
..+|.+.++++.|.+.+
T Consensus 10 lL~~LLkS~~PeDLqaA 26 (41)
T d1j2jb_ 10 MLARLLKSSHPEDLRAA 26 (41)
T ss_dssp HHHHHHTCSCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH
Confidence 47899999999998875
No 7
>d3dbya2 a.29.13.1 (A:126-260) Uncharacterized protein BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
Probab=4.51 E-value=1.1e+02 Score=22.25 Aligned_cols=6 Identities=33% Similarity=1.320 Sum_probs=3.1
Q ss_pred cCCCCC
Q psy3961 365 HNCDPI 370 (371)
Q Consensus 365 ~~~~p~ 370 (371)
|||||+
T Consensus 130 p~~dp~ 135 (135)
T d3dbya2 130 PKCNPL 135 (135)
T ss_dssp CSCCTT
T ss_pred CCCCCC
Confidence 455554
No 8
>d1uj8a1 a.159.5.1 (A:13-76) Iron-sulfur cluster assembly protein IscX {Escherichia coli [TaxId: 562]}
Probab=3.43 E-value=1.9e+02 Score=18.01 Aligned_cols=15 Identities=40% Similarity=0.742 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCCCC
Q psy3961 356 SGLAIYASYHNCDPI 370 (371)
Q Consensus 356 ~G~~~~~~y~~~~p~ 370 (371)
++...+-.||+.||.
T Consensus 10 IA~~L~e~~pdvDP~ 24 (64)
T d1uj8a1 10 IGEALYDAYPDLDPK 24 (64)
T ss_dssp HHHHHHHHSTTSCGG
T ss_pred HHHHHHHHCCCCCCC
Confidence 456677788999985
No 9
>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.12 E-value=2.4e+02 Score=17.98 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=9.6
Q ss_pred CCcHHHHHHHHhCC
Q psy3961 107 AVSVYEYLEKRFGS 120 (371)
Q Consensus 107 ~~Ti~d~l~~Ryg~ 120 (371)
...+.||++++|++
T Consensus 72 S~~I~~YLee~~~~ 85 (86)
T d1k0ma2 72 TNKIEEFLEAVLCP 85 (86)
T ss_dssp HHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHcCC
Confidence 34567788888764
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.87 E-value=9.9e+02 Score=17.95 Aligned_cols=86 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHhhhhhHHHHhhhhHHHHhh--ChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhCCch
Q psy3961 45 RNQSLIPVAFSLMASFMSAITLMGLSAEIVTY--GTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSAT 122 (371)
Q Consensus 45 r~l~~~~~~~s~~at~~s~~t~~g~~~~~y~~--G~~~~~~~~~~~~~~~l~~~~~~~~~rr~~~~Ti~d~l~~Ryg~~~ 122 (371)
||-+.|......+...++-......-..-.++ |.+....++...+..+..... .-+...+.||||++-
T Consensus 5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~----------~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLF----------QPLFGLLSDKLGLRK 74 (417)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT----------HHHHHHHHHHHTTCT
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhCchH
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy3961 123 RLAASLAFTVQMVLYMGI 140 (371)
Q Consensus 123 ~~~~~~~~ii~~~~~~~~ 140 (371)
..+.+.............
T Consensus 75 ~l~~~~~~~~~~~~~~~~ 92 (417)
T d1pv7a_ 75 YLLWIITGMLVMFAPFFI 92 (417)
T ss_dssp HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Done!