RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3961
(371 letters)
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 395 bits (1017), Expect = e-135
Identities = 150/264 (56%), Positives = 197/264 (74%)
Query: 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
VDY VF ML+IS IGIY+ F GGKQKT EYL G R+ S+ PVA SL+ASF+SAITL+
Sbjct: 1 VDYVVFAAMLLISAGIGIYFGFFGGKQKTTEEYLLGGRSMSVFPVALSLLASFISAITLL 60
Query: 68 GLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAAS 127
G AE+ YGTQ+ +I ISY++ PI A+I+LPVF+ L S YEYLE RF + RL AS
Sbjct: 61 GTPAEVYLYGTQYWLIVISYLIVGPITAYIFLPVFYNLQLTSTYEYLELRFNRSVRLLAS 120
Query: 128 LAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQ 187
L F +QM+LY+GI +YAPA+AL V G++ + S+ +VG+VC FY+T+GG+KAV+ TDVFQ
Sbjct: 121 LLFILQMLLYLGIVIYAPALALNQVTGINLWISVLIVGIVCTFYTTLGGLKAVVWTDVFQ 180
Query: 188 SILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFT 247
++M+ + AVII I+VGG+ E+W IA RLEFFN PDPT RH++++L+IGG FT
Sbjct: 181 VVVMFGGVLAVIIKGTIDVGGLSEVWEIAEEGGRLEFFNFDPDPTVRHTFWSLVIGGTFT 240
Query: 248 YCSLYGINQMQVQRYLTMKDYKTA 271
+ SLYG+NQ QVQRYL++ K A
Sbjct: 241 WLSLYGVNQAQVQRYLSLPSLKQA 264
Score = 122 bits (310), Expect = 4e-31
Identities = 43/83 (51%), Positives = 60/83 (72%)
Query: 289 FSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTL 348
F+ PDPT RH++++L+IGG FT+ SLYG+NQ QVQRYL++ K A ++LW++ L L
Sbjct: 218 FNFDPDPTVRHTFWSLVIGGTFTWLSLYGVNQAQVQRYLSLPSLKQAKKALWLNIVGLVL 277
Query: 349 LSVSTCFSGLAIYASYHNCDPIK 371
+ FSGL IYA YH+CDP+
Sbjct: 278 ILSLCVFSGLVIYAKYHDCDPLT 300
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 303 bits (778), Expect = 3e-99
Identities = 132/282 (46%), Positives = 188/282 (66%)
Query: 5 FGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAI 64
F VDY VF+L+LV S IG+YY SGG+Q+T E+L +R +PVA SL+A+F SA+
Sbjct: 1 FSTVDYVVFVLLLVASAGIGLYYACSGGRQRTTQEFLMADRKMGCLPVALSLLATFQSAV 60
Query: 65 TLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRL 124
++G +EI T+GTQ+ + SY L I AH+++PVF++L S YEYLE RF R+
Sbjct: 61 AILGAPSEIYTFGTQYWFLGCSYFLGLLIPAHVFIPVFYRLRLTSAYEYLELRFSKTVRI 120
Query: 125 AASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTD 184
++ F QMV+YMG+ LYAPA+AL AV G + + S+ +GLVC Y+ +GG+KAVI TD
Sbjct: 121 CGTVTFIFQMVIYMGVVLYAPALALNAVTGFNLWGSVLAMGLVCTLYTALGGLKAVIWTD 180
Query: 185 VFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGG 244
VFQ+++M+A AVIIV +I GGI +W +A R+ F+L+PDP RH+++TL +GG
Sbjct: 181 VFQTVVMFAGQLAVIIVGSIQAGGIARVWRVAANGSRIAGFDLNPDPLERHTFWTLGVGG 240
Query: 245 IFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFL 286
+F +LYG+NQ QVQRYL+ + K A + P + L
Sbjct: 241 VFLMLALYGVNQAQVQRYLSSRTEKQAIMSCYAVFPCQQVSL 282
Score = 86.1 bits (213), Expect = 2e-18
Identities = 34/83 (40%), Positives = 51/83 (61%)
Query: 289 FSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTL 348
F L+PDP RH+++TL +GG+F +LYG+NQ QVQRYL+ + K A+ S + +P +
Sbjct: 221 FDLNPDPLERHTFWTLGVGGVFLMLALYGVNQAQVQRYLSSRTEKQAIMSCYAVFPCQQV 280
Query: 349 LSVSTCFSGLAIYASYHNCDPIK 371
C GL ++A Y C P+
Sbjct: 281 SLCLGCLMGLVMFARYGECSPLD 303
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is a
high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. Its expression is under
the control of the C/EBP transcription factor. Its
tumor-suppressive role is related to uptake of butyrate,
propionate, and pyruvate, these latter are inhibitors of
histone deacetylases. SMCT1 is expressed in the colon,
small intestine, kidney, thyroid gland, retina, and
brain. SMCT1 may contribute to the intestinal/colonic
and oral absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 285 bits (731), Expect = 5e-92
Identities = 130/263 (49%), Positives = 180/263 (68%)
Query: 4 SFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSA 63
SF + DY VF LML++S AIGIYY F+GG QKT+ ++L G R+ + +PVA SL ASFMSA
Sbjct: 3 SFTVWDYVVFALMLLVSAAIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTASFMSA 62
Query: 64 ITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATR 123
+T++G AE+ +G F + SY + I A ++LPVF++LG S YEYLE RF R
Sbjct: 63 VTVLGTPAEVYRFGAIFSIFAFSYAIVVLISAEVFLPVFYRLGITSTYEYLELRFNKCVR 122
Query: 124 LAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILT 183
L ++ F VQ +LY GI +YAPA+AL V G + ++ G+VC FY T+GG+KAVI T
Sbjct: 123 LLGTVLFIVQTILYTGIVIYAPALALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVIWT 182
Query: 184 DVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIG 243
DVFQ +M A +VII A + GGIG I N ++ RL F++ P+P RH+++T++IG
Sbjct: 183 DVFQVGIMVAGFLSVIIRAVVLQGGIGPILNDSYYGGRLNFWDFDPNPLKRHTFWTIVIG 242
Query: 244 GIFTYCSLYGINQMQVQRYLTMK 266
G FT+ S+YG+NQ QVQRY++ K
Sbjct: 243 GTFTWTSIYGVNQSQVQRYISCK 265
Score = 79.0 bits (195), Expect = 5e-16
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 289 FSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTL 348
+ P+P RH+++T++IGG FT+ S+YG+NQ QVQRY++ K A SL+++ L
Sbjct: 224 WDFDPNPLKRHTFWTIVIGGTFTWTSIYGVNQSQVQRYISCKTRFHAKLSLYINLVGLWA 283
Query: 349 LSVSTCFSGLAIYASYHNCDP 369
+ FSGLA+Y+ Y +CDP
Sbjct: 284 ILSCAVFSGLAMYSIYKDCDP 304
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1
and 2 and related proteins; solute-binding domain.
SMCT1 is a high-affinity transporter of various
monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. Human SMCT1 (hSMCT1, also
called AIT) is encoded by the tumor suppressor gene
SLC5A8. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. It also mediates
iodide transport from thyrocyte into the colloid lumen
in thyroid gland and, through transporting L-lactate and
ketone bodies, helps maintain the energy status and the
function of neurons. SMCT2 is a low-affinity transporter
for short-chain fatty acids, lactate, pyruvate, and
nicotinate. hSMCT2 is encoded by the SLC5A12 gene. SMCT2
is expressed in the kidney, small intestine, skeletal
muscle, and retina. In the kidney, SMCT2 may initiate
lactate absorption in the early parts of the tubule,
SMCT1 in the latter parts of the tubule. In the retina,
SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner. This subgroup belongs to the solute carrier 5
(SLC5) transporter family.
Length = 536
Score = 283 bits (726), Expect = 2e-91
Identities = 129/276 (46%), Positives = 183/276 (66%)
Query: 3 KSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMS 62
+F + DY VF LML+IS IGIYY F+GG QKT+ ++L G R+ + +PVA SL ASFMS
Sbjct: 2 GTFTVWDYVVFALMLLISAGIGIYYAFAGGGQKTSKDFLMGGRSMTAVPVALSLTASFMS 61
Query: 63 AITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSAT 122
A+T++G AE+ +G F++ ISY I + ++LPVF++LG S YEYLE RF
Sbjct: 62 AVTVLGTPAEVYRFGAIFIIFAISYTFVVLISSEVFLPVFYRLGITSTYEYLELRFNKPV 121
Query: 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVIL 182
RL ++ F VQ +LY GI +YAPA+AL V G + ++ G+VC FY T+GG+KAV+
Sbjct: 122 RLLGTVLFIVQTILYTGIVIYAPALALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVVW 181
Query: 183 TDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLII 242
TDVFQ +M A +VII A + GGIG I N ++ RL F++ P+P RH+++T+++
Sbjct: 182 TDVFQVGIMVAGFLSVIIRAVVLQGGIGNILNDSYYGGRLNFWDFDPNPLRRHTFWTIVV 241
Query: 243 GGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVN 278
GG FT+ +YG+NQ QVQRY++ K A L +N
Sbjct: 242 GGTFTWTGIYGVNQSQVQRYISCKTRFHAKLSLYIN 277
Score = 77.5 bits (191), Expect = 1e-15
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 289 FSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTL 348
+ P+P RH+++T+++GG FT+ +YG+NQ QVQRY++ K A SL+++ L
Sbjct: 224 WDFDPNPLRRHTFWTIVVGGTFTWTGIYGVNQSQVQRYISCKTRFHAKLSLYINLVGLWA 283
Query: 349 LSVSTCFSGLAIYASYHNCDP 369
+ V F GLA+Y+ Y +CDP
Sbjct: 284 ILVCAVFCGLAMYSIYKDCDP 304
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (product of the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 477
Score = 275 bits (707), Expect = 4e-89
Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 8/289 (2%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
DY V L L+I IGIY K K+N ++ G R VAFS++A+ +S +T +
Sbjct: 1 DYLVIALYLLILLLIGIYT---SRKNKSNEDFFLGGRQMPWYLVAFSMIATSLSGVTFLS 57
Query: 69 LSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
+ E+ G ++ + Y+L I+A + LP+F++L S+YEYLEKRFG + R +
Sbjct: 58 VPGEVYGSGFTYLQFVLGYLLGYLIIAFVLLPLFYRLNLTSIYEYLEKRFGRSVRKTGAF 117
Query: 129 AFTVQMVLYMGIALYAPAIALEAVMGLS----QFYSITLVGLVCLFYSTIGGIKAVILTD 184
F + L GI LYA A+ L+ V+ + ++ + G++ Y+T+GGIKAV+ TD
Sbjct: 118 FFLLSRTLGAGIRLYAVALVLQQVLFDDLGVPFWLTVLITGVLIWLYTTLGGIKAVVWTD 177
Query: 185 VFQSILMYAAIFAVIIVAAINVG-GIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIG 243
V Q+++M + VII+ ++ +G G+GEIW+ A + R F+ PDPT+RH+++ IG
Sbjct: 178 VLQTVVMLGGVVLVIIIISVKLGGGLGEIWSTASESGRSRIFDFDPDPTSRHTFWKQFIG 237
Query: 244 GIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLS 292
GIF ++ G++Q VQR L+ ++ K A N F L
Sbjct: 238 GIFITIAMTGLDQDMVQRNLSCRNLKDAQKNMYWNGVGLVPVNLLFLLL 286
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related
proteins; solute-binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. NIS is expressed in the thyroid,
colon, ovary, and in human breast cancers. It mediates
the active transport and the concentration of iodide
from the blood into thyroid follicular cells, a
fundamental step in thyroid hormone biosynthesis, and is
the basis of radioiodine therapy for thyroid cancer.
Mutation in the SLC5A5 gene can result in a form of
thyroid hormone dysgenesis. Human NIS exists mainly as a
dimer stabilized by a disulfide bridge. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 535
Score = 235 bits (602), Expect = 5e-73
Identities = 119/298 (39%), Positives = 179/298 (60%), Gaps = 10/298 (3%)
Query: 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
DY VF LML++S IG++ S G QKT++++ G R + +PV SL ASFMSA+ ++
Sbjct: 1 WDYGVFALMLLVSTGIGLFVGLSRGGQKTSDDFFTGGRRMAAVPVGLSLSASFMSAVQVL 60
Query: 68 GLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAAS 127
G+ AE YG +F+ + + +L + + A++++PVF++LG S YEYLE RF + RL +
Sbjct: 61 GVPAEAYRYGLKFLWMCLGQLLNSLLTAYLFMPVFYRLGLTSTYEYLEMRFSRSVRLCGT 120
Query: 128 LAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQ 187
L + V +LY GI +YAPA+ L V GL + S+ G +C FY+T+GG+KAVI TDVFQ
Sbjct: 121 LQYIVATMLYTGIVIYAPALILNQVTGLDIWASLLSTGAICTFYTTVGGMKAVIWTDVFQ 180
Query: 188 SILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFT 247
++M + +AV+I I VGG + IA R+ + PDP +R++++T ++GG
Sbjct: 181 VVVMLSGFWAVLIRGVILVGGPSRVLEIAQNGSRINLGDFDPDPRSRYTFWTFVVGGTLV 240
Query: 248 YCSLYGINQMQVQRYLTMKDYKTAYLRPNVNN----------PTSNIFLFCFSLSPDP 295
+ S+YG+NQ QVQRY+ + K A L VN T I +F DP
Sbjct: 241 WLSMYGVNQAQVQRYVACRTEKQAKLALLVNQVGLFLIVSSAATCGIVMFVLYKDCDP 298
Score = 64.9 bits (158), Expect = 2e-11
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 293 PDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPLLTLLSVS 352
PDP +R++++T ++GG + S+YG+NQ QVQRY+ + K A +L V+ L L+ S
Sbjct: 222 PDPRSRYTFWTFVVGGTLVWLSMYGVNQAQVQRYVACRTEKQAKLALLVNQVGLFLIVSS 281
Query: 353 TCFSGLAIYASYHNCDPIK 371
G+ ++ Y +CDP+
Sbjct: 282 AATCGIVMFVLYKDCDPLL 300
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2
and related proteins; solute-binding domain. SMCT2 is a
low-affinity transporter for short-chain fatty acids,
lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2)
is encoded by the SLC5A12 gene. SMCT2 is expressed in
the kidney, small intestine, skeletal muscle, and
retina. In the kidney, it is expressed in the apical
membrane of the proximal convoluted tubule, along the
entire length of the tubule (in contrast to the
high-affinity monocarboxylate transporter SMCT1,
belonging to a different family, which is limited to the
S3 segment of the tubule). SMCT2 may initiate lactate
absorption in the early parts of the tubule. In the
retina, SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner, SMCT2 is expressed exclusively in Muller cells.
Nicotine transport by hSMCT2 is inhibited by several
non-steroidal anti-inflammatory drugs. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 529
Score = 231 bits (591), Expect = 3e-71
Identities = 117/290 (40%), Positives = 171/290 (58%)
Query: 3 KSFGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMS 62
K+F DY VF + ++S IG+++ K+ T+ E+L G R S PVA SL ASFMS
Sbjct: 2 KNFVAWDYVVFAGLFLVSSGIGVFFAIKERKKATSKEFLVGGRQMSCGPVALSLTASFMS 61
Query: 63 AITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSAT 122
A+T++G AE+ +G FV+ I+Y + ++LPVF++ G S YEYLE RF
Sbjct: 62 AVTVLGTPAEVYRFGASFVLFFIAYTFVIIFTSELFLPVFYRSGITSTYEYLELRFNKPV 121
Query: 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVIL 182
R AA+L + VQ +LY G+ +YAPA+AL V G + S+ G+VC FY T+GG+KAV+
Sbjct: 122 RYAATLIYIVQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVW 181
Query: 183 TDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLII 242
TD FQ ++M V+I +I+ GG +W A+ RL F+ DP RH+++T+ +
Sbjct: 182 TDAFQMVVMVVGFLTVLIQGSIHNGGFTNVWETAYNGSRLNIFDFDVDPLRRHTFWTITV 241
Query: 243 GGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSLS 292
GG FT+ +YG+NQ +QR ++ K K A L +N I L C S
Sbjct: 242 GGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYLNLLGLWIILVCAVFS 291
Score = 64.9 bits (158), Expect = 2e-11
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 286 LFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLWVSWPL 345
L F DP RH+++T+ +GG FT+ +YG+NQ +QR ++ K K A +L+++
Sbjct: 221 LNIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYLNLLG 280
Query: 346 LTLLSVSTCFSGLAIYASYHNCDP 369
L ++ V FSGL +Y+ Y +CDP
Sbjct: 281 LWIILVCAVFSGLIMYSHYKDCDP 304
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 195 bits (498), Expect = 5e-58
Identities = 101/271 (37%), Positives = 151/271 (55%), Gaps = 11/271 (4%)
Query: 5 FGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIP---VAFSLMASFM 61
FGI+D V +L L+ IG+Y FS K K+ +Y G IP S+ A+ +
Sbjct: 1 FGILDLLVLVLYLLAMLGIGLY--FSK-KNKSTEDYFLGGGR---IPGWAAGLSIFATML 54
Query: 62 SAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSA 121
S+IT + + A+ + V N++ LA P+ A+ ++P F +L S YEYLEKRFG +
Sbjct: 55 SSITFLAIPAKAYATDWNYFVGNLAIPLAAPLAAYFFIPFFRRLNITSAYEYLEKRFGPS 114
Query: 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVI 181
R+ ASL F + + MGI LY PA+AL AV G++ + I L+G++ + Y+ +GGI+AVI
Sbjct: 115 ARVYASLLFILFQLGRMGIVLYLPALALSAVTGINIYIIILLMGIITIIYTVLGGIEAVI 174
Query: 182 LTDVFQSILMYAAIFAVIIVAAINV-GGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTL 240
TDV Q I++ +I+ + GG G++++IA N + + S T W +
Sbjct: 175 WTDVIQGIVLLGGALLCLIIIIFKIPGGFGQVFDIASANGKFSLGDFSFSLTEPTFW-VV 233
Query: 241 IIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
+IGGIF Y +Q VQRYLT K K A
Sbjct: 234 LIGGIFNNLQNYTSDQDVVQRYLTTKSEKEA 264
Score = 47.5 bits (114), Expect = 6e-06
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 281 TSNIFLFCFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSLW 340
++N S T W ++IGGIF Y +Q VQRYLT K K A +SLW
Sbjct: 211 SANGKFSLGDFSFSLTEPTFWV-VLIGGIFNNLQNYTSDQDVVQRYLTTKSEKEARKSLW 269
Query: 341 VSWPLLTLLSVSTCFSGLAIYASYH 365
++ L + + F G A+Y Y
Sbjct: 270 LNALLSLPVWLLFFFIGTALYVFYQ 294
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 188 bits (480), Expect = 2e-55
Identities = 90/264 (34%), Positives = 144/264 (54%), Gaps = 4/264 (1%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
D+ V I L+ G+Y G K +Y G R+ P+ S+MA+ SAIT +
Sbjct: 2 DWVVLIGYLLGILVYGLY---KGRGNKNQEDYFLGGRSMPWWPIGLSVMATQASAITFLS 58
Query: 69 LSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
+ G +FV LA + ++P+F++L + YEYLE+RFG TRL S
Sbjct: 59 APGQAYLDGMRFVQFYFGLPLAMIFLCITFVPIFYRLKVYTAYEYLERRFGLKTRLLTSF 118
Query: 129 AFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQS 188
F + L G+ +YAPAI L ++G S +Y+I L+G++ + Y+ +GGIKAVI TDV Q
Sbjct: 119 LFLISRGLATGVMIYAPAIILSTILGWSLWYTILLIGVIVIIYTVLGGIKAVIWTDVIQM 178
Query: 189 ILMYAAIFAVIIVAAINVG-GIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFT 247
++++A +F + + G + +A ++ +L + S D + +++++ +IGG F
Sbjct: 179 VIIFAGLFIALGFLLKGLPVGFTDALLLAGKSGKLNALDFSFDLSETYTFWSGLIGGFFL 238
Query: 248 YCSLYGINQMQVQRYLTMKDYKTA 271
Y S +G +Q QVQRYLT K A
Sbjct: 239 YLSYFGTDQSQVQRYLTAKSIGEA 262
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 479
Score = 164 bits (418), Expect = 1e-46
Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 9/269 (3%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
D AV +L L+ +G++ G+QK+ +Y G R+ V S++A+ S +T +
Sbjct: 1 DLAVIVLYLLGLALLGLWL---SGRQKSTADYFLGGRSMPWWAVCLSIVATETSTLTFLS 57
Query: 69 LSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
+ F+ + + Y+L IVA + LP +F+ VS YE L +RFG + AS+
Sbjct: 58 VPGVAYGGDLTFLQLALGYILGRIIVAFVLLPRYFRGEVVSAYELLGQRFGGGMQKTASV 117
Query: 129 AFTVQMVLYMGIALYAPAIALEAVMG-----LSQFYSITLVGLVCLFYSTIGGIKAVILT 183
F V +L G+ LYA AI + ++G LS SI ++GLV L Y+ GGI+AV+ T
Sbjct: 118 TFLVTRLLADGVRLYATAIPISLILGADGVALSYILSIVVIGLVTLLYTYFGGIRAVVWT 177
Query: 184 DVFQ-SILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLII 242
DV Q + + A+ A+ + G +I A + + +F +L T+ ++++ II
Sbjct: 178 DVIQLVVYIGGAVAALAYLLGALPGDWLQIAAAAGKFHKFDFSDLILGLTSPYTFWAAII 237
Query: 243 GGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
GG + +G +Q+ VQR L ++ + A
Sbjct: 238 GGALLSMASHGTDQLMVQRLLAARNLRDA 266
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family. The Solute:Sodium
Symporter (SSS) Family (TC 2.A.21) Members of the SSS
family catalyze solute:Na+ symport. The solutes
transported may be sugars, amino acids, nucleosides,
inositols, vitamins, urea or anions, depending on the
system. Members of the SSS family have been identified
in bacteria, archaea and animals, and all functionally
well characterized members catalyze solute uptake via
Na+ symport. Proteins of the SSS generally share a core
of 13 TMSs, but different members of the family may have
different numbers of TMSs. A 13 TMS topology with a
periplasmic N-terminus and a cytoplasmic C-terminus has
been experimentally determined for the proline:Na+
symporter, PutP, of E. coli [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 407
Score = 152 bits (385), Expect = 2e-42
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 8/236 (3%)
Query: 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVF 102
R+ VA SL AS++SA +GL I YG + ++ I+ +++P+F
Sbjct: 1 AGRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIF 60
Query: 103 FKLGAVSVYEYLEKRFGS-ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSI 161
GA ++ EYLEKRFG R + L+ + + LYM + L++ A+ +E + GL + S+
Sbjct: 61 INNGAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYLSL 120
Query: 162 TLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIA----- 216
L+G + + Y+ GG+KAV+ TD Q+++M F + + A VGG+G A
Sbjct: 121 LLLGAITILYTVFGGLKAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAP 180
Query: 217 HRNDRLEFFNLSPDPTTRHS-WFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
+ ++ DP+T W + G Y NQ+ VQR L K K A
Sbjct: 181 TNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALW-YWTNQVIVQRCLAAKSAKHA 235
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 140 bits (355), Expect = 1e-37
Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 9/265 (3%)
Query: 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
+D + I+ L+I IG+Y R K K++ +Y R+ +A +L A+ +SA + +
Sbjct: 1 IDLIIVIVYLLILLGIGLYSR---KKVKSSEDYFLAGRSLGPFVLALTLAATNISAGSFV 57
Query: 68 GLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGS-ATRLAA 126
G++ TYG I L ++A + P +LG ++ E L +R+ S R+ +
Sbjct: 58 GVAGLAYTYGISAGWYVIGAALGLLLLALFFAPRLRRLGVKTIPETLLERYYSKGVRILS 117
Query: 127 SLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVF 186
++ + ++ Y+ L I L ++G+ + ++ ++ + Y+ GG++AV TDV
Sbjct: 118 AIIIIIFLIGYLAAQLIGGGIILSTLLGIPYWTGAIILAVIVILYTVFGGLRAVAWTDVI 177
Query: 187 QSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIF 246
Q +LM + + A VGG G ++ L LS P + I+G
Sbjct: 178 QGVLMLIGVILLAFFALSKVGGGG----LSALAAALPALLLSLGPGG-GPGWGTILGLFL 232
Query: 247 TYCSLYGINQMQVQRYLTMKDYKTA 271
N VQR+L KD KTA
Sbjct: 233 LGGFGVLANPQIVQRFLAAKDEKTA 257
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 132 bits (335), Expect = 1e-34
Identities = 65/272 (23%), Positives = 120/272 (44%), Gaps = 10/272 (3%)
Query: 5 FGIVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAI 64
++ +F++ L++ IG+Y K K+ +Y G R+ A S AS S
Sbjct: 1 IMLILLIIFLIYLILMLLIGLYAY---RKTKSLEDYFLGGRSLGPFVYALSAAASDTSGW 57
Query: 65 TLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKL----GAVSVYEYLEKRFGS 120
T +GL G + I I ++ ++ ++ P +L GA ++ ++LE RFGS
Sbjct: 58 TFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGS 117
Query: 121 -ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKA 179
R+ ++L V + Y+ + L A + L + G+S I + L+ Y+ +GG++A
Sbjct: 118 KILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLRA 177
Query: 180 VILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFT 239
V+ TD Q ++M A+ + I+ I GG GE++ + F P +
Sbjct: 178 VVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLA--PLFLTHPFDGALSPIYI 235
Query: 240 LIIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
+ + T Y + R++ K K+
Sbjct: 236 ISLIAWGTLFLGYFGQPHILPRFMAAKSIKSL 267
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 114 bits (287), Expect = 5e-28
Identities = 73/278 (26%), Positives = 129/278 (46%), Gaps = 15/278 (5%)
Query: 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
VDY + + IG Y + K KT++++ R+ + +A+ + A+ ++
Sbjct: 1 VDYLIVAVYFAFVLGIGFYLK---RKVKTSSDFFLSGRSLPAWITGLAFVAANLGALEIV 57
Query: 68 GLSAEIVTYGTQFVVINISYVLATP---IVAHIYLPVFFKLGAVSVYEYLEKRFGSATRL 124
G++A YG ++ ++ A P + + +P ++ SV EYL+ RF +TR
Sbjct: 58 GMAASGAQYG--IATVHFYWIGAIPAMVFLGFVMMPFYYGSKVRSVPEYLKLRFNESTRT 115
Query: 125 AASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTD 184
+++F + +L GI LYA A+ L+ ++G + SI L + L Y+T+GG+ + I +
Sbjct: 116 LNAISFAIMTILMSGINLYALALVLQVLLGWPFWASILLSAAIVLAYTTLGGLTSAIYNE 175
Query: 185 VFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHS------WF 238
V Q L+ A + ++++ I+VGG + N + + L+ P S
Sbjct: 176 VLQFFLIVAGLLPLVVIGLIDVGGWDGLSEKIDANGQHLWNGLAWGPQGSQSTNPMGVNL 235
Query: 239 TLIIGGIFTYCSLYGI-NQMQVQRYLTMKDYKTAYLRP 275
LI G F Y N + VQR L KD A P
Sbjct: 236 GLIFGLGFVLSFGYWTTNFLVVQRALAAKDLSAAKRTP 273
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related
proteins; solute binding domain. Escherichia coli PutP
catalyzes the Na+-coupled uptake of proline with a
stoichiometry of 1:1. The putP gene is part of the put
operon; this operon in addition encodes a proline
dehydrogenase, allowing the use of proline as a source
of nitrogen and/or carbon. This subfamily also includes
the Bacillus subtilis Na+/proline cotransporter (OpuE)
which has an osmoprotective instead of catabolic role.
Expression of the opuE gene is under osmotic control and
different sigma factors contribute to its regulation; it
is also a putative CcpA-activated gene. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 464
Score = 113 bits (285), Expect = 8e-28
Identities = 69/270 (25%), Positives = 112/270 (41%), Gaps = 15/270 (5%)
Query: 10 YAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGL 69
FI+ L++ IGIY S K KT ++Y G R+ A S AS MS L+GL
Sbjct: 1 LITFIVYLLLMLGIGIY---SYRKTKTLSDYFLGGRSLGPWVTALSAGASDMSGWLLLGL 57
Query: 70 SAEIVTYGTQFVVINISYVLATPI---VAHIYLPVF-FKLGAVSVYEYLEKRFGSAT--- 122
G + I I +L T + L + K ++++ +YLE RF +
Sbjct: 58 PGAAYASGLSAIWIAIGLILGTYLNWLFVAKRLRRYTEKNDSITLPDYLENRFRDKSKLL 117
Query: 123 RLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVIL 182
R+ ++L + +Y L A E++ G+ + + +V + Y+ +GG AV
Sbjct: 118 RILSALIILIFFTIYAAAQLVAGGKLFESLFGIDYSTGLLIGAVVVVAYTFLGGFLAVSW 177
Query: 183 TDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLII 242
TD FQ +LM A+ + IVA +GG+ + D + II
Sbjct: 178 TDFFQGLLMLLALVLLPIVALAALGGLSGLVTALAAIDP-GLLSPFGGGLGL-GGLLAII 235
Query: 243 GGIFTYCSLYGINQMQ-VQRYLTMKDYKTA 271
+ L Q + R++ +KD K
Sbjct: 236 SLLAW--GLGYFGQPHILVRFMAIKDPKEI 263
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 111 bits (279), Expect = 5e-27
Identities = 78/269 (28%), Positives = 124/269 (46%), Gaps = 8/269 (2%)
Query: 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
+D+ V L ++ IG+Y FS K+ +++ G RN S+ A+ SA T +
Sbjct: 1 LDWLVIALYFLLMLGIGLY--FSKRASKSTSDFFLGGRNLPWWLAGLSMFATTFSADTFV 58
Query: 68 GLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAV----SVYEYLEKRFGSATR 123
++ TYG I + +A + A + P + +L V E RFG+ R
Sbjct: 59 AVAGIAYTYGLVGNWIWWLWAVAGLLGAFFFAPRWRRLRVVTDGELPEERYGGRFGAPLR 118
Query: 124 LAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQF-YSITLVGLVCLFYSTIGGIKAVIL 182
+ F + + +G LY AI + AV G +I ++GL+ L YS IGG+ AV++
Sbjct: 119 QFYAWYFALLSNVGIGAWLYLAAIKVAAVFGPWDITLTILILGLITLIYSVIGGLWAVVV 178
Query: 183 TDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTLII 242
TDV Q +++ AA AV ++A VGG G +W+ F +L +F ++
Sbjct: 179 TDVVQFVILMAASIAVAVLALNAVGGPGGLWSQLPEGFFDFFLSLDGFTGFGALFFFILW 238
Query: 243 GGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
G + S G QRYL+ K K A
Sbjct: 239 FGWYA-GSASGGGWYDAQRYLSAKSEKAA 266
>gnl|CDD|212038 cd10328, SLC5sbd_YidK, uncharacterized SLC5 subfamily, Escherichia
coli YidK-like; solute binding domain. Uncharacterized
subfamily of the solute binding domain of the solute
carrier 5 (SLC5) transporter family (also called the
sodium/glucose cotransporter family or solute sodium
symporter family) that co-transports Na+ with sugars,
amino acids, inorganic ions or vitamins. One member of
the SLC5 family, human SGLT3, has been characterized as
a glucose sensor and not a transporter. This subfamily
includes the uncharacterized Escherichia coli YidK
protein, and belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 472
Score = 91.8 bits (229), Expect = 2e-20
Identities = 62/271 (22%), Positives = 127/271 (46%), Gaps = 18/271 (6%)
Query: 17 LVISGAIGI--YYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIV 74
L+ + + + +Y+ G +++ Y R+ + + +A SL+ + +S L+GL+ +
Sbjct: 2 LLFTALVALISWYKTRGDDLSSSDGYFLAGRSLTGVVIAGSLLLTNLSTEQLVGLNGQAY 61
Query: 75 TYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTVQ- 133
G + ++ +A I+A ++LP + K G ++ E+LE+R+ TR S+ F +
Sbjct: 62 ALGMSVMAWEVTAAVALVILALVFLPRYLKSGITTIPEFLEERYDKTTRRIVSILFLLGY 121
Query: 134 MVLYMGIALYAPAIAL------EAVMGLSQFYSITL----VGLVCLFYSTIGGIKAVILT 183
+V+ + LY+ A+AL ++G+S F ++ L +G++ Y+ GG+KAV ++
Sbjct: 122 VVILLPTVLYSGALALNSLFDVSELLGISYFQALWLLVWLIGIIGAIYAIFGGLKAVAVS 181
Query: 184 DVFQSILMYAAIFAVIIVAAINVGG---IGEIWNIAHRNDRLEFFNLSPDPTTRHSWFTL 240
D + + + I+ I +G + + + + E N + + TL
Sbjct: 182 DTINGVGLLIGGLLIPILGLIALGDGSFLAGLDTLL--TNHPEKLNAIGGADSPVPFPTL 239
Query: 241 IIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
G + + NQ VQR L K+ K
Sbjct: 240 FTGMLLVNLFYWCTNQAIVQRALGAKNLKEG 270
>gnl|CDD|236699 PRK10484, PRK10484, putative transporter; Provisional.
Length = 523
Score = 87.6 bits (218), Expect = 7e-19
Identities = 67/278 (24%), Positives = 131/278 (47%), Gaps = 28/278 (10%)
Query: 13 FILMLVISGAIGI--YYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLS 70
+ L + + + +++ +++ Y R+ + +A SL+ + +S L+GL+
Sbjct: 4 ILSFLGFTLLVAVISWWKTRKTDTSSSDGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLN 63
Query: 71 AEIVTYGTQFVVI--NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
+ Y + V+ ++ +A I+A I+LP + K G ++ ++LE+R+ TR S+
Sbjct: 64 GQ--AYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSI 121
Query: 129 AFTVQ-MVLYMGIALYAPAIALEA------VMGLSQFYSITL----VGLVCLFYSTIGGI 177
F + +V ++ I LY+ A+AL + ++G+S +I L +G++ Y+ GG+
Sbjct: 122 LFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGL 181
Query: 178 KAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWN-----IAHRNDRLEFFNLSPDPT 232
KAV ++D I + V + I +G G ++L + DP
Sbjct: 182 KAVAVSDTINGIGLLIGGLLVPVFGLIALGD-GSFMQGLEQLTTVHPEKLNSIGGATDPV 240
Query: 233 TRHSWFT-LIIGGIFTYCSLYGINQMQVQRYLTMKDYK 269
+ FT LI+ +F +C+ NQ VQR L K+
Sbjct: 241 PFPTLFTGLILVNLFYWCT----NQSIVQRALGAKNLA 274
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family. Membership of this
family is supported by a significant blast score.
Length = 406
Score = 86.2 bits (214), Expect = 1e-18
Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 2/234 (0%)
Query: 40 YLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYL 99
Y R+ + SL AS+MSA + +GL+ G + I ++ ++ ++
Sbjct: 1 YFLAGRSMTGFVNGLSLAASYMSAASFVGLAGAGAASGLAGGLYAIGALVGVWLLLWLFA 60
Query: 100 PVFFKLGAVSVYEYLEKRFGS--ATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQ 157
P LGA ++ +YL KRFG ++L+ + YM + + A +E +GL+
Sbjct: 61 PRLRNLGAYTMPDYLRKRFGGKRILVYLSALSLLLYFFTYMSVQIVGGARLIELALGLNY 120
Query: 158 FYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAH 217
+ ++ L+G + Y+ GG AV TD Q++LM ++I+ VGG
Sbjct: 121 YTAVLLLGALTAIYTFFGGFLAVSWTDTIQAVLMLFGTIILMIIVFHEVGGYSSAVEKYM 180
Query: 218 RNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
D +PD + +QR L KD K
Sbjct: 181 TADPNGVDLYTPDGLHILRDPLTGLSLWPGLVLGTTGLPHILQRCLAAKDAKCI 234
>gnl|CDD|212035 cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose
cotransporter (vSGLT) and related proteins; solute
binding domain. vSGLT transports D-galactose,
D-glucose, and alpha-D-fucose, with a sugar specificity
in the order of D-galactose >D-fucose >D-glucose. It
transports one Na+ ion for each sugar molecule, and
appears to function as a monomer. vSGLT has 13
transmembrane helices (TMs): TM-1, an inverted topology
repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered
to conform to the solute carrier 6 family Aquifex
aeolicus LeuT). This subfamily belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 523
Score = 85.4 bits (212), Expect = 3e-18
Identities = 72/284 (25%), Positives = 127/284 (44%), Gaps = 35/284 (12%)
Query: 11 AVFILMLVISGAIGIY-YRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGL 69
+FI+ +++ +G++ R G +K +Y ++ + + SL+A+ +SA +G+
Sbjct: 1 VIFIVYVILVIGLGLWVSREKKGGEKDATDYFLAGKSLTWWAIGASLIAANISAEQFIGM 60
Query: 70 SAEIVTYGTQFVV-INI-SY----VLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATR 123
S G+ F + + I SY + IVA +LP+F K G ++ ++LE+R+ R
Sbjct: 61 S------GSGFALGLAIASYEWMAAITLIIVAKFFLPIFLKNGIYTMPQFLEQRYNGRVR 114
Query: 124 LAASLAFTVQMVLYMGIAL----YAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKA 179
++ + + LY+ + L Y A+A+E + G+ YSI + YS GG+KA
Sbjct: 115 TIMAVFWLL---LYVFVNLTSVLYLGALAIEGITGIPLTYSIIGLAAFAAAYSIYGGLKA 171
Query: 180 VILTDVFQS--------ILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDP 231
V TDV Q I Y A+ + G + A + + +PD
Sbjct: 172 VAWTDVIQVVFLVLGGLITTYIALSLLGGGEGKVFAGFTLLAAGAPEHFHMILDKSNPDN 231
Query: 232 TTRHSWFTLIIGGI----FTYCSLYGINQMQVQRYLTMKDYKTA 271
+++IGG+ Y +G NQ +QR L K A
Sbjct: 232 YKDLPGISVLIGGLWIANLYY---WGFNQYIIQRALGAKSLSEA 272
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier 5
(SLC5) transporter family.
Length = 472
Score = 85.3 bits (212), Expect = 3e-18
Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 7/208 (3%)
Query: 13 FILMLVISGAIGIYYRFSGGKQKTN--NEYLFGNRNQSLIPVAFSLMASFMSAITLMGLS 70
I+ LVI IG Y R S ++ + EY G R+ +A +L+A++ SA + +G
Sbjct: 5 IIIYLVILLGIGFYARRSKKRRSGDFLEEYFIGGRSMGGFVLAMTLVATYTSASSFIGGP 64
Query: 71 AEIVTYGTQFVVINISYVLATPIVAHIYLPVFF----KLGAVSVYEYLEKRFGS-ATRLA 125
G +V++ + V + + F K+ AV++ +YL R+ S A +
Sbjct: 65 GAAYKIGLGWVLLAMIQVPTGFLTLGVLGKKFAIIARKINAVTIIDYLRARYNSKALVVL 124
Query: 126 ASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDV 185
+SLA V + M A LEAV GLS + + GL + Y+TIGG +AV LTD
Sbjct: 125 SSLALIVFFIAAMVAQFIGGARLLEAVTGLSYVTGLLIFGLTVILYTTIGGFRAVALTDA 184
Query: 186 FQSILMYAAIFAVIIVAAINVGGIGEIW 213
Q I+M +++ GG+ I
Sbjct: 185 IQGIVMIIGTVLLLVGVLAAGGGMEAIM 212
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction
only].
Length = 571
Score = 84.5 bits (209), Expect = 7e-18
Identities = 70/274 (25%), Positives = 119/274 (43%), Gaps = 26/274 (9%)
Query: 15 LMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEIV 74
L + + AI +++ G ++ Y R+ S + +A SL+ + +S L+GL+
Sbjct: 10 LGVTLLVAIISWWKTRGTDLSSSKGYFLAGRSLSGLVIACSLVLTNLSTEQLVGLNG--Q 67
Query: 75 TYGTQFVVI--NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTV 132
Y V+ ++ V+ +A +LP + K G ++ ++LE+RF TR+ S F +
Sbjct: 68 AYKGNMSVMAWEVTSVIPLIFLALYFLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLI 127
Query: 133 -QMVLYMGIALYAPAIA------LEAVMGLSQFYSI----TLVGLVCLFYSTIGGIKAVI 181
V ++ LY+ A+A L V+ +S +I +GL + Y+ IGG+KA+
Sbjct: 128 AYGVCFLPTVLYSGALALNSIFHLGEVLQISHGAAIWLLVIAIGLAGILYAIIGGLKAMA 187
Query: 182 LTDVFQSILMYAAIFAVIIVAAINVG------GIGEIWNIAHRNDRLEFFNLSPDPTTRH 235
++D I + V I A I +G GI +I + E N PT
Sbjct: 188 VSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTV-----HAEKLNAIGGPTDPV 242
Query: 236 SWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYK 269
W G + + NQ VQR L K
Sbjct: 243 PWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLA 276
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 80.0 bits (198), Expect = 2e-16
Identities = 72/284 (25%), Positives = 128/284 (45%), Gaps = 32/284 (11%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
D V +L V+ A+G++ + + +L G R+ PV SL AS + + +G
Sbjct: 1 DIVVIVLYFVLVLAVGLWSMCRTNRGTVSGYFLAG-RSMVWWPVGASLFASNIGSGHFVG 59
Query: 69 LSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
L+ G + + ++ I++PV+ G V++ EYL KRFG R+ L
Sbjct: 60 LAGTGAASGIAVGAFEWNALFILLLLGWIFVPVYIAAGVVTMPEYLRKRFGG-QRIRVYL 118
Query: 129 AFTVQMVLY----MGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTD 184
+ + + LY + L+A AI ++ +G + + SI ++ + Y+ GG+ AVI TD
Sbjct: 119 SV-LSLFLYIFTKISADLFAGAIFIQQALGWNLYLSIIILLAITAVYTITGGLAAVIYTD 177
Query: 185 VFQSILMYAAIFAVIIVAAINVGGIGEI----------------WNIAHRNDRLEFFNLS 228
Q+++M F ++ +A + VGG + R + F++
Sbjct: 178 TLQTVIMVIGAFILMGLAFVEVGGYEGLEEKYFLAIPSVTQVGNTTAKCGLPRADAFHIF 237
Query: 229 PDPTTRH-SW----FTLIIGGIFTYCSLYGINQMQVQRYLTMKD 267
DP T W F L I ++ +C+ +Q+ VQR L K+
Sbjct: 238 RDPVTGDLPWPGLIFGLTILSLWYWCT----DQVIVQRCLAAKN 277
>gnl|CDD|233735 TIGR02121, Na_Pro_sym, sodium/proline symporter. This family
consists of the sodium/proline symporter (proline
permease) from a number of Gram-negative and
Gram-positive bacteria and from the archaeal genus
Methanosarcina. Using the related pantothenate permease
as an outgroup, candidate sequences from Bifidobacterium
longum and several from archaea are found to be outside
the clade defined by known proline permeases. These
sequences, scoring between 570 and -40, define the range
between trusted and noise cutoff scores [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 487
Score = 78.9 bits (195), Expect = 4e-16
Identities = 61/223 (27%), Positives = 91/223 (40%), Gaps = 25/223 (11%)
Query: 13 FILMLVISGAIGIY-YRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSA 71
F + L+I IG Y Y+ K ++Y+ G R+ A S AS MS LMGL
Sbjct: 7 FGVYLIIMLLIGFYAYK----KTTNLSDYVLGGRSLGPFVTALSAGASDMSGWLLMGLPG 62
Query: 72 EIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVY-----------EYLEKRF-- 118
+ G + I I + Y+ F + VY ++ E RF
Sbjct: 63 ALYVTGLSELWIAIGLTIGA------YINWKFVAPRLRVYTEAAHNSITLPDFFENRFND 116
Query: 119 -GSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGI 177
R+ ++L V +Y L A E+ GL + + L+ + Y+ GG
Sbjct: 117 KSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGGF 176
Query: 178 KAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRND 220
AV TD Q +LM+ A+ V IVA N+GG GE + +
Sbjct: 177 LAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAIN 219
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 454
Score = 75.3 bits (186), Expect = 6e-15
Identities = 70/278 (25%), Positives = 118/278 (42%), Gaps = 40/278 (14%)
Query: 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
+DY V L AIG + + KT+ +YL R + L M+A+ L
Sbjct: 1 LDYGVIALYFAAMIAIGWW---GMRRAKTSEDYLVAGRR-----LGPGLYLGTMAAVVLG 52
Query: 68 GLSA-EIVTYGTQFVVINISYVLATPIVAHIYLPVFF-----KLGAVSVYEYLEKRFGSA 121
G S V G Q+ + + V + I L + +L +V E LE R+G +
Sbjct: 53 GASTIGGVGLGYQYGISGMWLVFMIGLGI-IALGLLLAKRIARLKVYTVSEVLELRYGPS 111
Query: 122 TRLAASL---AFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIK 178
R+ ++L A+T+ + + IA+ + GL + SI + G + + YS +GG+
Sbjct: 112 ARVISALVMLAYTLMVAVTQVIAI---GTVFSVLFGLPRTLSILVGGGIVVLYSVLGGMW 168
Query: 179 AVILTDVFQSILMYAAIFAVIIVAAI-NVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHSW 237
++ LTD+ Q ++ IF +++ A+ GG+ + +L P +
Sbjct: 169 SITLTDIIQFVVKTIGIFLLLLPLALSKAGGLSGL------QAKL--------PASYFDL 214
Query: 238 FTLIIGGIFTYCSLYG----INQMQVQRYLTMKDYKTA 271
++ IFTY LY I Q QR T + K A
Sbjct: 215 TSIGWDTIFTYFLLYFFGILIGQDIWQRVFTARSEKVA 252
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline
cotransporter CHT and related proteins; solute-binding
domain. Na+/choline co-transport by CHT is Cl-
dependent. Human CHT (also called CHT1) is encoded by
the SLC5A7 gene, and is expressed in the central nervous
system. hCHT1-mediated choline uptake may be the
rate-limiting step in acetylcholine synthesis, and
essential for cholinergic transmission. Changes in this
choline uptake in cortical neurons may contribute to
Alzheimer's dementia. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 464
Score = 75.2 bits (186), Expect = 6e-15
Identities = 56/267 (20%), Positives = 107/267 (40%), Gaps = 26/267 (9%)
Query: 14 ILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEI 73
IL ++ IG++ + + K + ++L R+ L F+L A++ T++G +
Sbjct: 5 ILYYLLILGIGLW---ASRRVKNSEDFLVAGRSLPLPVGTFTLFATWFGGETILGAAETF 61
Query: 74 VTYGTQFVVIN-ISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASLAFTV 132
G V + Y L + + ++G +++ ++ +R+G + S+
Sbjct: 62 YEEGLGGVAQDPFGYALCLILGGLFFAKPMRRMGLLTLGDFFRQRYGRRVEVLLSIPAVP 121
Query: 133 QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMY 192
+ ++ L A + L ++GL I + + L Y+ GG+ +V TDV Q I+++
Sbjct: 122 SYLGWVAAQLVALGLVLSVILGLPVTLGILISAAIVLIYTLFGGMWSVAYTDVVQLIVIF 181
Query: 193 AAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSPDPTTRHS--------WFTLIIGG 244
+ ++ N GG+ P T+ S W TL +G
Sbjct: 182 IGLLLLVPFVLTNPGGVDA------SAAAAGKLRFFPWLGTKPSDWLIWIDAWLTLGLGS 235
Query: 245 IFTYCSLYGINQMQVQRYLTMKDYKTA 271
I Q QR L+ K KTA
Sbjct: 236 I--------PQQDVFQRVLSAKSEKTA 254
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 75.5 bits (186), Expect = 7e-15
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 5/215 (2%)
Query: 11 AVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLS 70
I LV+ I IY K NEY GNR+ I +A + A+++SA + +G
Sbjct: 5 LPLIGYLVVVFGIAIYAYRKRSKGSFLNEYYLGNRSMGGIVLAMTFTATYISASSFIGGP 64
Query: 71 AEIVTYGTQFVVINISYVLATPIVAHIYLPVFF----KLGAVSVYEYLEKRFGSAT-RLA 125
YG +V++ + V + + F + A+++ + L R+ S
Sbjct: 65 GAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWL 124
Query: 126 ASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDV 185
ASL+ V M + A LE +G+ + + + Y+ GG +AV+LTD
Sbjct: 125 ASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDT 184
Query: 186 FQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRND 220
Q ++M + + GG+ D
Sbjct: 185 IQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTID 219
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 73.4 bits (180), Expect = 3e-14
Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 26/283 (9%)
Query: 8 VDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLM 67
D +V ++ V+ A+G++ + +L G R+ P+ SL AS + + +
Sbjct: 1 ADISVIVIYFVVVLAVGVWAMVRTNRGTVGGFFLAG-RSMVWWPIGASLFASNIGSGHFV 59
Query: 68 GLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAAS 127
GL+ G + ++ I+ +++P++ K G V++ EYL KRFG R+
Sbjct: 60 GLAGTGAAGGIAIGGFEWNALVVVVILGWLFVPIYIKAGVVTMPEYLRKRFG-GQRIQIY 118
Query: 128 LAFTVQMVLY----MGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILT 183
L+ + ++LY + +++ AI + +GL+ + +I ++ + Y+ GG+ AVI T
Sbjct: 119 LSV-LSLLLYVFTKISADMFSGAIFINQALGLNIYLAIVILLAITALYTVTGGLAAVIYT 177
Query: 184 DVFQSILMYAAIFAVIIVAAINVGGIGEIW---------NIAHRND---------RLEFF 225
D Q+I+M F ++ A VGG I++ N R + F
Sbjct: 178 DTLQTIIMLVGSFILMGFAFNKVGGYDAFMEKYMNAIPSVISYGNSTSPEKCYTPRADSF 237
Query: 226 NLSPDPTTRH-SWFTLIIGGIFTYCSLYGINQMQVQRYLTMKD 267
++ DP T W LI G + +Q+ VQR L+ K+
Sbjct: 238 HIFRDPLTGDLPWPGLIFGLTILALWYWCTDQVIVQRCLSAKN 280
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and
related proteins; solute-binding domain. Human SMIT is
a high-affinity myo-inositol transporter, and is
expressed in brain, heart, kidney, and lung. Inhibition
of myo-inositol uptake, through down-regulation of SMIT,
may be a common mechanism of action of mood stabilizers,
including lithium, carbamazepine, and valproate. SMIT is
encoded by the SLC5A3 gene, which is a candidate gene
for pathogenesis of nervous system dysfunction in Down
syndrome (DS). The SNP, 21q22 near SLC5A3-MRPS6-KCNE2,
has been associated with coronary heart disease,
cardiovascular disease, and myocardial infarction. SMIT
may also be involved in the pathogeneisis of congenital
cataract. SMIT also plays roles in osteogenesis, bone
formation, and bone mineral density determination. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 600
Score = 72.9 bits (179), Expect = 6e-14
Identities = 76/283 (26%), Positives = 131/283 (46%), Gaps = 33/283 (11%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
D V +L ++ AIGI+ + + T + Y R+ + +PV SL S + + +G
Sbjct: 1 DIIVIVLYFILVLAIGIFAMWKS-NRGTVSGYFLAGRSMTWLPVGASLFVSNIGSEHFIG 59
Query: 69 LSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
L+ G + ++ ++ +++PV+ G V++ EYL KRFG R+ L
Sbjct: 60 LAGSGAAAGFAVGAWEFNALILLQLLGWVFIPVYIASGVVTMPEYLSKRFG-GERIRVYL 118
Query: 129 AFTVQMVLY----MGIALYAPAIALEAVMGLSQFYSIT-LVGLVCLFYSTIGGIKAVILT 183
A + ++LY + + LY+ A+ ++ +G + + SI L+GL L T GG+ AVI T
Sbjct: 119 A-VLSLLLYIFTKISVNLYSGALFIQESLGWNLYVSIILLIGLTALLTVT-GGLAAVIYT 176
Query: 184 DVFQSILMYAAIFAVIIVAAINVGGIGEI---------------WNIAHRNDRLEFFNLS 228
D Q+ LM ++I++ I VGG + N+ + + F L
Sbjct: 177 DTLQAFLMIIGALTLMIISFIEVGGYEGLKSKYMRAIPNTTLYTSNLCCGLPKEDSFKLL 236
Query: 229 PDPTTRH-SWFTLIIG----GIFTYCSLYGINQMQVQRYLTMK 266
PT W I+G I+ +C+ +Q+ VQR L K
Sbjct: 237 RGPTDPDVPWPGFILGQTPASIWYWCA----DQVIVQRVLAAK 275
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction
only].
Length = 529
Score = 70.8 bits (174), Expect = 2e-13
Identities = 37/204 (18%), Positives = 90/204 (44%), Gaps = 2/204 (0%)
Query: 11 AVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLS 70
+ I +L + + I Y ++ + ++ +Y + ++ +MSA + +G++
Sbjct: 8 VIGIFVLFVLITLYITY-WASKRTRSATDYYVAGGRITGFQNGLAIAGDYMSAASFLGIA 66
Query: 71 AEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSAT-RLAASLA 129
I G ++ +I + PI+ + KLG + +++ R+ S RL A++
Sbjct: 67 GLIFISGYDGLIYSIGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIG 126
Query: 130 FTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSI 189
+ LY+ + + + ++G+ + + G++ + Y +GG+KA + Q++
Sbjct: 127 TIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAV 186
Query: 190 LMYAAIFAVIIVAAINVGGIGEIW 213
L+ A + I+ +GG
Sbjct: 187 LLIVAALIMAIMIMWKLGGNPNPL 210
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and
related proteins; solute-binding domain. Dur3 is the
yeast plasma membrane urea transporter. Saccharomyces
cerevisiae DUR3 also transports polyamine. The polyamine
uptake of S. cerevisiae DUR3 is activated upon its
phosphorylation by polyamine transport protein kinase 2
(PTK2). S. cerevisiae DUR3 also appears to play a role
in regulating the cellular boron concentration. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 493
Score = 69.5 bits (171), Expect = 5e-13
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 21/214 (9%)
Query: 11 AVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLS 70
A+F L++V + YR GK++++ E++ R+ A S+++S+ A TL+ +
Sbjct: 9 ALFALLMVFITRLLKRYR---GKKQSSEEFMTAGRSVGTGLTAASIVSSWTWAATLLQSA 65
Query: 71 AEIVTYGTQFVVINISYVL--ATPIVAHIYLPVFFKLGAVSVYEYLE---KRFGSATRLA 125
YG V Y A I+ L + K A + + LE R+G A
Sbjct: 66 TVAYQYG---VSGPFWYASGAALQILLFAPLAIRIKRKAPNAHTLLEIVRARYGKA---- 118
Query: 126 ASLAFTVQMVLYMGIA----LYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVI 181
A L F + I L + + A+ G++ + L+ L L Y+ GG++A
Sbjct: 119 AHLVFLFFALFTNFIVLAMLLLGGSAVVNALTGMNIVAASFLIPLGVLLYTLFGGLRATF 178
Query: 182 LTDVFQSILMY--AAIFAVIIVAAINVGGIGEIW 213
LTD ++++ IFA + + ++G +++
Sbjct: 179 LTDYIHTVIILIILLIFAFAVYTSSDIGSPSKVY 212
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and
related proteins; solute-binding domain. Human SGLT5 is
a glucose transporter, which also transports galactose.
It is encoded by the SLC5A10 gene, and is exclusively
expressed in the renal cortex. This subgroup belongs to
the solute carrier 5 (SLC5) transporter family.
Length = 604
Score = 67.7 bits (165), Expect = 3e-12
Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 29/287 (10%)
Query: 7 IVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITL 66
+ D V + ++ A+GI+ + T + Y R+ + P+ SL AS +
Sbjct: 2 VADIIVIGVYFALNVAVGIWSSCRVSRN-TVSGYFLAGRDMAWWPIGASLFASSEGSGLF 60
Query: 67 MGLSAEIVTYGTQFVVI--NISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSA-TR 123
+GL+ G N +Y L +A +++PV+ G V++ EYL++RFG R
Sbjct: 61 IGLAGTGAAGGIAVAGFEWNATYALLA--LAWVFVPVYISSGIVTMPEYLQRRFGGERIR 118
Query: 124 LAAS-LAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVIL 182
+ S L+ + + + LY+ A+ ++ +G + + S L+ +V Y+ GG+ AVI
Sbjct: 119 MYLSVLSLLLSVFTKISTDLYSGALFVQVCLGWNLYLSTVLMLVVTALYTIAGGLAAVIY 178
Query: 183 TDVFQSILMYAAIFAVIIVAAINVGGIGE-------------IWNIAHRNDRLEFFNLSP 229
TD Q+++M + I A +GG I N R + +L
Sbjct: 179 TDALQTLIMVIGAVILTIKAFNQIGGYSNLEEAYLQAVPSKIIPNTTCHLPRADAMHLFR 238
Query: 230 DPTTRH-SW----FTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
DP T W F L I + +C+ +Q+ VQR L+ + A
Sbjct: 239 DPVTGDLPWTGMTFGLTIMATWYWCT----DQVIVQRSLSARSLSHA 281
>gnl|CDD|212057 cd11488, SLC5sbd_SGLT4, Na(+)/glucose cotransporter SGLT4 and
related proteins; solute-binding domain. Human SGLT4
(hSGLT4) has been reported to be a low-affinity glucose
transporter with unusual sugar selectivity: it
transports D-mannose but not galactose or
3-O-methyl-D-glucoside. It is encoded by the SLC5A9 gene
and is expressed in intestine, kidney, liver, brain,
lung, trachea, uterus, and pancreas. hSLGT4 is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5 )transporter
family.
Length = 605
Score = 67.6 bits (165), Expect = 3e-12
Identities = 71/283 (25%), Positives = 131/283 (46%), Gaps = 25/283 (8%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
D AV ++ V A+GI+ + T Y R+ + P+ SLM+S + + +G
Sbjct: 1 DIAVVVVYFVFVLAVGIWSSIRASR-GTVGGYFLAGRSMTWWPIGASLMSSNVGSGLFIG 59
Query: 69 LSAEIVTYGTQF--VVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAA 126
L+ G N ++VL + I++PV+ G V++ EYL+KRFG R+
Sbjct: 60 LAGTGAAGGLAVGGFEWNATWVLLA--LGWIFVPVYIAAGVVTMPEYLKKRFG-GQRIRI 116
Query: 127 SLAFTVQMVLYM----GIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVIL 182
++ + ++LY+ +++ A+ ++ +G + + S ++ V Y+ GG+ AVI
Sbjct: 117 YMS-VLSLILYIFTKISTDIFSGALFIQVSLGWNLYLSTVILLAVTAVYTIAGGLTAVIY 175
Query: 183 TDVFQSILMYAAIFAVIIVAAINVG---GIGEIWNIAHRN----------DRLEFFNLSP 229
TD Q+++M F ++ + VG G+ + + A R + F++
Sbjct: 176 TDALQTVIMVIGAFVLMFIGFEKVGWYPGLEQKYEKAIPKVTVPNTTCHLPRSDAFHIFR 235
Query: 230 DPTTRH-SWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
DP T W LI G ++ +Q+ VQR L+ K+ A
Sbjct: 236 DPVTGDIPWPGLIFGLTVLATWVWCTDQVIVQRSLSAKNLSHA 278
>gnl|CDD|212059 cd11490, SLC5sbd_SGLT6, Na(+)/chiro-inositol cotransporter SGLT6
and related proteins; solute-binding domain. Human
SGLT6 (also called KST1, SMIT2) is a chiro-inositol
transporter, which also transports myo-inositol. It is
encoded by the SLC5A11 gene. Xenopus Na1-glucose
cotransporter type 1 (SGLT-1)-like protein is predicted
to contain 14 membrane-spanning regions. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 602
Score = 65.3 bits (159), Expect = 2e-11
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 15/209 (7%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
D V +L + A+G++ + K+ T Y ++ PV SL AS + + +G
Sbjct: 1 DIVVLVLYFLFVLAVGLWSMWKT-KRSTVKGYFLAGKDMVWWPVGASLFASNVGSGHFIG 59
Query: 69 LSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
L+ G + + + ++A ++LP++ G ++ EYL+KRFG R+ L
Sbjct: 60 LAGSGAASGIAATAYEWNGMFSVLVLAWLFLPIYIAAGVTTMPEYLQKRFG-GKRIQIFL 118
Query: 129 AFTVQMVLYMGI--------ALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAV 180
A VLY+ I +YA A+ ++ + + ++ + + Y+ GG+ AV
Sbjct: 119 A-----VLYLFIYIFTKISVDMYAGALFIQQALQWDLYLAVVGLLAITAVYTVAGGLAAV 173
Query: 181 ILTDVFQSILMYAAIFAVIIVAAINVGGI 209
I TD Q+++M ++ + VGG
Sbjct: 174 IYTDALQTLIMLIGALILMGFSFAEVGGF 202
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 64.9 bits (159), Expect = 2e-11
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 5/213 (2%)
Query: 13 FILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAE 72
++ LV+ I +Y NEY GNR+ +A +L+A+++SA + +G
Sbjct: 9 LVIYLVLVFGISVYAYRKRQAGDFLNEYFLGNRSMGGFVLAMTLIATYISASSFIGGPGA 68
Query: 73 IVTYGTQFVVINISYVLATPIVAHIYLPVFF----KLGAVSVYEYLEKRFGS-ATRLAAS 127
YG +V++ + V + I F K AV++ + L R+ S AS
Sbjct: 69 AYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLAS 128
Query: 128 LAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQ 187
L+ V M A LE G+S + + G+ Y+ GG +AV+LTD Q
Sbjct: 129 LSLLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGGFRAVVLTDALQ 188
Query: 188 SILMYAAIFAVIIVAAINVGGIGEIWNIAHRND 220
I+M ++I GG+ D
Sbjct: 189 GIVMLVGTVILLIGVIHAGGGLENAVQTLQAID 221
>gnl|CDD|131174 TIGR02119, panF, sodium/pantothenate symporter. Pantothenate
(vitamin B5) is a precursor of coenzyme A and is made
from aspartate and 2-oxoisovalerate in most bacteria
with completed genome sequences. However, some pathogens
must import pantothenate. This model describes PanF, a
sodium/pantothenate symporter, from a larger family of
Sodium/substrate symporters (pfam00474). Several species
that have this transporter appear to lack all enzymes of
pantothenate biosynthesis, namely Haemophilus
influenzae, Pasteurella multocida, Fusobacterium
nucleatum, and Borrelia burgdorferi [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A, Transport and binding proteins, Other].
Length = 471
Score = 62.4 bits (152), Expect = 1e-10
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 8/213 (3%)
Query: 10 YAVFILMLVISGAIGIYYRFSGGKQKTN---NEYLFGNRNQSLIPVAFSLMASFMSAITL 66
V L++ + I S Q T+ NEY G R+ +A +L+A++ SA +
Sbjct: 2 EVVIPLIIYLVTVFLIAIYASKRVQSTDSFLNEYFLGGRSMGGFVLAMTLVATYGSASSF 61
Query: 67 MGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFF----KLGAVSVYEYLEKRFGS-A 121
+G YG +V++ + V V + F K A+++ + L+ R+ +
Sbjct: 62 IGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKF 121
Query: 122 TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVI 181
+S++ V M A +E++ GLS ++ + L Y+T GG +AV
Sbjct: 122 LVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGGFRAVA 181
Query: 182 LTDVFQSILMYAAIFAVIIVAAINVGGIGEIWN 214
LTD Q I+M+ ++I GG+ +I
Sbjct: 182 LTDAIQGIVMFTGTTILLIAVIKAGGGVEKIME 214
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 484
Score = 59.8 bits (146), Expect = 7e-10
Identities = 33/196 (16%), Positives = 83/196 (42%), Gaps = 2/196 (1%)
Query: 14 ILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLSAEI 73
+ ++ + + I ++ + +T +++ R+ + ++ +MSA + +G++ I
Sbjct: 3 LFLVFVLLTLYITI-WAARRTRTTSDFYVAGRSVPPVQNGLAIAGDYMSAASFLGIAGLI 61
Query: 74 VTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGS-ATRLAASLAFTV 132
G + + + ++ + G +V ++L R GS RL A+++ V
Sbjct: 62 ALLGYDGLWYAVGWTGGYVLLLLLVAEPLRNFGKYTVPDFLADRLGSRPVRLVAAVSTLV 121
Query: 133 QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSILMY 192
Y+ + + ++G+ + +VG++ L Y +GG++A + Q +L+
Sbjct: 122 ISFFYLVAQMVGAGLLFSLLLGIPYEVGVVVVGVLMLVYVVLGGMRATTWVQIIQYVLLL 181
Query: 193 AAIFAVIIVAAINVGG 208
A I+ G
Sbjct: 182 GAYLLPAILVLARFGF 197
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and
related proteins; solute-binding domain. Human SGLT2
(hSGLT2) is a high-capacity, low-affinity glucose
transporter, that plays an important role in renal
glucose reabsorption. It is encoded by the SLC5A2 gene
and expressed almost exclusively in renal proximal
tubule cells. Mutations in hSGLT2 cause Familial Renal
Glucosuria (FRG), a rare autosomal defect in glucose
transport. hSGLT2 is a major drug target for regulating
blood glucose levels in diabetes. hSGLT2 is predicted to
have 14 membrane-spanning regions. This subgroup belongs
to the solute carrier 5 (SLC5) transporter family.
Length = 583
Score = 58.0 bits (140), Expect = 3e-09
Identities = 42/204 (20%), Positives = 95/204 (46%), Gaps = 7/204 (3%)
Query: 9 DYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMG 68
D +V ++ +G++ + T Y R+ PV SL AS + + +G
Sbjct: 2 DISVIAAYFLLVIGVGLWSMCRTNR-GTVGGYFLAGRSMVWWPVGASLFASNIGSGHFVG 60
Query: 69 LSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSATRLAASL 128
L+ G + + ++ +++PV+ G +++ +YL+KRFG R+ L
Sbjct: 61 LAGTGAASGIAVAGFEWNALFVVLLLGWLFVPVYLTAGVITMPQYLKKRFG-GQRIRLYL 119
Query: 129 AFTVQMVLYM----GIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTD 184
+ + + LY+ + +++ A+ ++ +G + + S+ + + + Y+ GG+ A++ TD
Sbjct: 120 S-VLSLFLYIFTKISVDMFSGAVFIQQALGWNIYASVIALLGITMIYTVTGGLAALMYTD 178
Query: 185 VFQSILMYAAIFAVIIVAAINVGG 208
Q+ ++ ++ A VGG
Sbjct: 179 TVQTFVIIGGACVLMGYAFHEVGG 202
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional.
Length = 502
Score = 54.3 bits (130), Expect = 4e-08
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 14/213 (6%)
Query: 7 IVDYAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITL 66
+V + V+I +++ G I +R K ++Y+ G R+ A S AS MS L
Sbjct: 8 LVTFCVYIFGMILIGFIA--WR----STKNFDDYILGGRSLGPFVTALSAGASDMSGWLL 61
Query: 67 MGLSAEIVTYGTQFVVINISYVLATPI-----VAHIYLPVFFKLGAVSVYEYLEKRFGSA 121
MGL + G I I L I + + + A+++ +Y RF
Sbjct: 62 MGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDK 121
Query: 122 TRL---AASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIK 178
+R+ ++L + +Y + A A E+ G+S ++ + Y+ IGG
Sbjct: 122 SRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFL 181
Query: 179 AVILTDVFQSILMYAAIFAVIIVAAINVGGIGE 211
AV TD Q+ LM A+ ++ I+VGG G+
Sbjct: 182 AVSWTDTVQASLMIFALILTPVIVIISVGGFGD 214
>gnl|CDD|131758 TIGR02711, symport_actP, cation/acetate symporter ActP. Members of
this family belong to the Sodium:solute symporter
family. Both members of this family and other close
homologs tend to be encoded next to a member of Pfam
family pfam04341, a set of uncharacterized membrane
proteins. The characterized member from E. coli is
encoded near and cotranscribed with the acetyl coenzyme
A synthetase (acs) gene. Proximity to an acs gene was
used as one criterion for determining the trusted cutoff
for this model. Closely related proteins may differ in
function and are excluded by the high cutoffs of this
model; members of the family of phenylacetic acid
transporter PhaJ can score as high as 1011 bits
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 549
Score = 48.0 bits (114), Expect = 4e-06
Identities = 38/193 (19%), Positives = 90/193 (46%), Gaps = 3/193 (1%)
Query: 11 AVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMASFMSAITLMGLS 70
A+ + +L + + I Y ++ K ++ ++Y N + ++ +MSA + +G+S
Sbjct: 34 AIIMFLLFVGFTLYITY-WASKKTRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGIS 92
Query: 71 AEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGS-ATRLAASLA 129
A + T G ++ ++ +++ PI+ + LG + + R R+ ++
Sbjct: 93 ALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACG 152
Query: 130 FTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVILTDVFQSI 189
V + LY+ + +E + GL+ ++ LVG++ + Y GG+ A + +++
Sbjct: 153 SLVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212
Query: 190 -LMYAAIFAVIIV 201
L++ A F +V
Sbjct: 213 LLLFGATFMAFMV 225
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 38.0 bits (88), Expect = 0.006
Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 17/229 (7%)
Query: 52 VAFSLMASFMSAITLMGLSAEIVTYGT-QFVVINISYVLATPIVAHIYLPVFFKLGAVSV 110
+ SL+A+ +SA +G+S + G Q + + + I+ +LP+F + G ++
Sbjct: 3 LGASLIAAAISAEQFIGMSGSGYSIGLAQIISYIWASAITLIILGKYFLPIFIEKGIYTI 62
Query: 111 YEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGL-----SQFYSITLVG 165
E++EKRF + ++ + ++ + LY +ALE ++G+ + YSI ++
Sbjct: 63 PEFVEKRFNKRLKTILAVFWISLYLVNLTSVLYLGGLALETILGILTGFTNLMYSILILA 122
Query: 166 LVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVA---AINVGGIGEIWNIAHRNDRL 222
L+ + YS GG+ A++ TDV + + +A G+ ++ + A +
Sbjct: 123 LIAVVYSIYGGLSAIVWTDVIAVPFLVLGGVMTVYMAVSFIGGFAGVSKMVDAAPGHFE- 181
Query: 223 EFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
NL I G +G Q +QR L K A
Sbjct: 182 MILNLPG-------IAVAIGGLWVANLYYWGFIQYIIQRTLADKSVSEA 223
>gnl|CDD|237114 PRK12488, PRK12488, acetate permease; Provisional.
Length = 549
Score = 38.2 bits (89), Expect = 0.007
Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 55 SLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYL 114
++ +SA + +G+SA + G ++ + + PI+ + LG + + +
Sbjct: 77 AIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNLGKYTFADVV 136
Query: 115 EKRFGSA-TRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYST 173
R RL A+ +++Y+ + +E + G+S Y++ +VG + + Y T
Sbjct: 137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVT 196
Query: 174 IGGIKAVILTDVFQSILM 191
GG+ A + +++L+
Sbjct: 197 FGGMLATTWVQIIKAVLL 214
>gnl|CDD|234293 TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705
subfamily. This family belongs to a larger family of
transporters of the sodium:solute symporter superfamily,
TC 2.A.21. Members of this strictly bacterial protein
subfamily are found almost invariably immediately
downstream from a member of family TIGR03647.
Occasionally, the two genes are fused.
Length = 552
Score = 34.9 bits (81), Expect = 0.059
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 23/201 (11%)
Query: 10 YAVFILMLVISGAIGIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMAS---FMSA--- 63
Y + IGI+ R + +E+ R +P + MA+ +MSA
Sbjct: 2 YLFVGATFALYIGIGIWSRAG-----STSEFYVAGRG---VPPVANGMATAADWMSAASF 53
Query: 64 ITLMGLSAEIVTYGTQFVV-INISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGSAT 122
I++ GL A + G +++ YVL +A + P K G +V +++ R+ S T
Sbjct: 54 ISMAGLIAFLGYDGLAYLMGWTGGYVL----LALLLAPYLRKFGKYTVPDFIGDRYYSNT 109
Query: 123 -RLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIKAVI 181
RL A + Y+ + + + + + + + FY+ +GG+K V
Sbjct: 110 ARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGGMKGVT 169
Query: 182 LTDVFQSILMYAAIFAVIIVA 202
T V Q I++ I A ++ A
Sbjct: 170 WTQVAQYIVL---IVAYLVPA 187
>gnl|CDD|150726 pfam10084, DUF2322, Uncharacterized protein conserved in bacteria
(DUF2322). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 100
Score = 31.9 bits (73), Expect = 0.11
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 104 KLGAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYA 144
KLG++ VY L ++FG R AA G+ L+A
Sbjct: 36 KLGSLRVYNALAQKFGGLDRTAAQK----------GLELFA 66
>gnl|CDD|217759 pfam03845, Spore_permease, Spore germination protein.
Length = 320
Score = 31.8 bits (73), Expect = 0.55
Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 13/168 (7%)
Query: 53 AFSLMASFM---SAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVS 109
F L+ SF +TL A+ G V++ L ++ +Y + K +
Sbjct: 7 TFFLIVSFQLGSGILTLPRSLAKQAGDGWIAVLLGGLIGL---LLVLLYYKLLKKFPEKT 63
Query: 110 VYEYLEKRFGSATRLAASLAFTVQMVLYMGIAL--YAPAIALEAVMGLSQFYSITLVGLV 167
+ EY++K G S F + + G L ++ + + + I L L+
Sbjct: 64 LIEYMKKILGKWLGSLLSFLFALYFLYLAGRVLRDFSEVLQTFLLPDTPTW-IIILTLLL 122
Query: 168 CLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNI 215
Y GI+ +L F I+ + +++ I I N+
Sbjct: 123 VSIYLISKGIE--VLAREFCFIIPI--LLIILLFILIFSLKQAHIKNL 166
>gnl|CDD|236495 PRK09395, actP, acetate permease; Provisional.
Length = 551
Score = 30.7 bits (70), Expect = 1.3
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 60 FMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG 119
+MSA + +G+SA + T G ++ +I +++ PI+ + LG + + R
Sbjct: 84 YMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLK 143
Query: 120 -SATRLAASLAFTVQMVLYMGIALYAPAIAL-EAVMGLSQFYSITLVGLVCLFYSTIGG- 176
R ++ V + LY+ IA A L + + GL+ ++ LVG++ + Y GG
Sbjct: 144 QGPIRTLSACGSLVVVALYL-IAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGM 202
Query: 177 --------IKAVIL 182
IKAV+L
Sbjct: 203 LATTWVQIIKAVLL 216
>gnl|CDD|216916 pfam02174, IRS, PTB domain (IRS-1 type).
Length = 100
Score = 28.0 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 313 CSLYGINQMQV-QRYLTMKDYKTAVRSLWVSWPLLTL 348
C L G ++ + LT+ D + V VSWPL +L
Sbjct: 18 CGLSGSYRLCLTPEALTLDDLNSRVPL--VSWPLTSL 52
>gnl|CDD|222998 PHA03140, PHA03140, helicase-primase primase subunit; Provisional.
Length = 772
Score = 29.9 bits (67), Expect = 2.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 117 RFGSATRLAASLAFTVQMVLYMGIA-----LYAPAIA-LEAVMGLSQFYSITLVG 165
S R A+S A + +G A LY A+A L +G FYS G
Sbjct: 78 TLASLCRAASSAAPDAWPLEPLGNADTWRCLYGSALATLRRRLGFFSFYSPVRFG 132
>gnl|CDD|226574 COG4089, COG4089, Predicted membrane protein [Function unknown].
Length = 235
Score = 29.0 bits (65), Expect = 3.6
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 24 GIYYRFSGGKQKTNNEYLFGNRNQSLIPVAFS--LMASFMSAITLMGLS---AEIVTYGT 78
GI Y + + + N ++IP+A S LM S I L ++ IV+Y
Sbjct: 87 GIPYFVPVRRMQNEKTVIAVNLGGAVIPLAVSVFLMTKLQSYIVLAIINILVTAIVSYAF 146
Query: 79 QFVVINISYV---LATPIVAHIYLPVFFKLGAVS 109
V+ + V L PI A + + S
Sbjct: 147 ARVIPGVGIVVPALIPPITAVLSALLTTYGIHAS 180
>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small
guanosine triphosphatases (GTPases). RhoG is a GTPase
with high sequence similarity to members of the Rac
subfamily, including the regions involved in effector
recognition and binding. However, RhoG does not bind to
known Rac1 and Cdc42 effectors, including proteins
containing a Cdc42/Rac interacting binding (CRIB) motif.
Instead, RhoG interacts directly with Elmo, an upstream
regulator of Rac1, in a GTP-dependent manner and forms a
ternary complex with Dock180 to induce activation of
Rac1. The RhoG-Elmo-Dock180 pathway is required for
activation of Rac1 and cell spreading mediated by
integrin, as well as for neurite outgrowth induced by
nerve growth factor. Thus RhoG activates Rac1 through
Elmo and Dock180 to control cell morphology. RhoG has
also been shown to play a role in caveolar trafficking
and has a novel role in signaling the neutrophil
respiratory burst stimulated by G protein-coupled
receptor (GPCR) agonists. Most Rho proteins contain a
lipid modification site at the C-terminus, with a
typical sequence motif CaaX, where a = an aliphatic
amino acid and X = any amino acid. Lipid binding is
essential for membrane attachment, a key feature of most
Rho proteins.
Length = 191
Score = 28.4 bits (63), Expect = 4.7
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 280 PTSNIFLFCFSLSPDPT---TRHSWF 302
P +N+F+ CFS++ + RH W
Sbjct: 73 PQTNVFIICFSIASPSSYENVRHKWH 98
>gnl|CDD|213918 TIGR04305, fol_rel_CADD, putative folate metabolism protein, CADD
family. This protein family, related to but outside the
family of PqqC proteins involved in PQQ biosynthesis,
includes the well-studied Chlamydia protein CADD
(Chlamydia protein Associating with Death Domains),
which can induce apoptosis in a host cell. Other members
of this family occur in Rickettsia and Wolbachia,
unrelated in terms of phylogeny (both are
alphaproteobacteria) but similar in living
intracellularly. Local gene context in these species,
although not in Trichodesmium or Nitrosomonas eutropha,
suggests a role in folate metabolism, and some species
with this protein lack FolE but have other folate
synthesis proteins.
Length = 212
Score = 28.1 bits (63), Expect = 5.7
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 23/72 (31%)
Query: 114 LEKRFGSATRLAAS-------LAFTVQMV----------LYMGI-ALYA-----PAIALE 150
L KRF L L T ++V G+ ALYA P +A
Sbjct: 84 LWKRFAEGLGLDDKEVRNAPALPSTQKLVDTFFRLCRSSFAAGLGALYAYERQIPEVAEV 143
Query: 151 AVMGLSQFYSIT 162
+ GL +FY I+
Sbjct: 144 KIAGLKKFYGIS 155
>gnl|CDD|165342 PHA03049, PHA03049, IMV membrane protein; Provisional.
Length = 68
Score = 26.3 bits (58), Expect = 6.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 240 LIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYL 273
LI+ GI+ + N ++Y M+D KT Y+
Sbjct: 17 LIVYGIYNKKTTTSQNPPSQEKYEKMEDLKTGYV 50
>gnl|CDD|205395 pfam13214, DUF4022, Protein of unknown function (DUF4022). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 73 and 85 amino
acids in length.
Length = 83
Score = 26.8 bits (59), Expect = 6.3
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 48 SLIPVAFSLMASFMSAITLMGLSAEIVTYG 77
S++ +A L+A + AI L+G+S EI +YG
Sbjct: 14 SIVTLALLLLAEILVAIILIGVSIEICSYG 43
>gnl|CDD|115551 pfam06901, FrpC, RTX iron-regulated protein FrpC. This family
consists of several RTX iron-regulated FrpC proteins
which appear to be found exclusively in Neisseria
meningitidis. FrpC has been shown to be related to the
RTX family of bacterial cytotoxins. FrpC is found in the
meningococcal outer membrane. The function of this
family is unknown although it is thought to be a
virulence factor.
Length = 271
Score = 28.2 bits (62), Expect = 6.4
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 227 LSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNP 280
+ P TT + F L IG +FT S +N+ Q+ ++ + K + + NNP
Sbjct: 1 MRPYATTIYQLFILFIGSVFTMTSCEPVNEKTDQKAVSAQQAKE---QTSFNNP 51
>gnl|CDD|217376 pfam03122, Herpes_MCP, Herpes virus major capsid protein. This
family represents the major capsid protein (MCP) of
herpes viruses. The capsid shell consists of 150 MCP
hexamers and 12 MCP pentamers. One pentamer is found at
each of the 12 apices of the icosahedral shell, and the
hexamers form the edges and 20 faces.
Length = 1352
Score = 28.7 bits (65), Expect = 7.1
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 121 ATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYS 172
R ++ F VLY G+ L A V + FY + FY+
Sbjct: 886 GQRTGSTRNFRSLDGVLYNGLCLMAYPKRDRTVAE-TYFYPVP----FHRFYA 933
>gnl|CDD|224374 COG1457, CodB, Purine-cytosine permease and related proteins
[Nucleotide transport and metabolism].
Length = 442
Score = 28.4 bits (64), Expect = 7.6
Identities = 25/170 (14%), Positives = 61/170 (35%), Gaps = 10/170 (5%)
Query: 53 AFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGA----- 107
+ + A +VT G ++ L ++ ++ +F +
Sbjct: 21 GWLNLFLVWFGANFT--IASMVTGGLLVPGLSFGQSLLAILLGNLLGGIFMAYFSYQGAR 78
Query: 108 --VSVYEYLEKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVG 165
+ FG + SL + ++ + G+ + IA+ + GL + I ++G
Sbjct: 79 TGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWAGILIIG 138
Query: 166 LVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNI 215
++ TI G +A+ + L+ ++ + + GG+ +W
Sbjct: 139 VLM-TLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVK 187
>gnl|CDD|224206 COG1287, COG1287, Uncharacterized membrane protein, required for
N-linked glycosylation [General function prediction
only].
Length = 773
Score = 28.6 bits (64), Expect = 7.7
Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 10/180 (5%)
Query: 48 SLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFF--KL 105
L +S +G + +GT I L A FF L
Sbjct: 319 LLFLELLRAYILPISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFFALLL 378
Query: 106 GAVSVYEYLEKRFGSATRLAASLAFTVQMVLYMGI---ALYAPAIALEAVMGLSQFYSIT 162
G + + +L +R + APA+A+ A +GL Q I
Sbjct: 379 GILLLAYFLVRRPKKEGLFLLVWLVLSFYAALTQVRFAFYLAPAVAILAGIGLGQLLEIL 438
Query: 163 LVGLV--CLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRND 220
+G V + + S+ + +A+ +I++A++ + + N + +D
Sbjct: 439 KLGRVEKANGSAISLVASLADVAGFALSVKVLSAVPVLIVLASL---ALPWLRNSTNPSD 495
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.427
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,335,496
Number of extensions: 1922055
Number of successful extensions: 3416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3264
Number of HSP's successfully gapped: 277
Length of query: 371
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 273
Effective length of database: 6,590,910
Effective search space: 1799318430
Effective search space used: 1799318430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.8 bits)