RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3961
(371 letters)
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 217 bits (555), Expect = 9e-66
Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 9/300 (3%)
Query: 1 MEKSFGIVDYAVFILMLVISGAIGIY-YRFSGGKQKTNNEYLFGNRNQSLIPVAFSLMAS 59
+E +D VF + + I +G++ R G QK+ +Y ++ V SL+A+
Sbjct: 4 IEHGLSFIDIMVFAIYVAIIIGVGLWVSRDKKGTQKSTEDYFLAGKSLPWWAVGASLIAA 63
Query: 60 FMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVFFKLGAVSVYEYLEKRFG 119
+SA +G+S + G + IV +LP+F + G ++ E++EKRF
Sbjct: 64 NISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFN 123
Query: 120 SATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIGGIK 178
+ ++ + + + + LY +ALE ++G+ YSI + L L YS GG+
Sbjct: 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLS 183
Query: 179 AVILTDVFQSILMYAAIFAVIIVAAINVGG-------IGEIWNIAHRNDRLEFFNLSPDP 231
AV+ TDV Q + F +A +GG + ++ + A + + +P
Sbjct: 184 AVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQY 243
Query: 232 TTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSNIFLFCFSL 291
LI G +G NQ +QR L K A + I F L
Sbjct: 244 MNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLALIVPFLVVL 303
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 176 bits (448), Expect = 1e-50
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 8/237 (3%)
Query: 43 GNRNQSLIPVAFSLMASFMSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPVF 102
++ V SL+A+ +SA +G+S + G + IV +LP+F
Sbjct: 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIF 77
Query: 103 FKLGAVSVYEYLEKRFGSATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFYSI 161
+ G ++ E++EKRF + ++ + + + + LY +ALE ++G+ YSI
Sbjct: 78 IEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSI 137
Query: 162 TLVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGG-------IGEIWN 214
+ L L YS GG+ AV+ TDV Q + F +A +GG + ++ +
Sbjct: 138 LGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVD 197
Query: 215 IAHRNDRLEFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTA 271
A + + +P LI G +G NQ +QR L K A
Sbjct: 198 AAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEA 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 1e-07
Identities = 71/419 (16%), Positives = 117/419 (27%), Gaps = 131/419 (31%)
Query: 18 VISGAIGIYYRFSGGKQKTNNEY---LFGNRNQSLIPVAFSLMASFM--SAITLMGLSAE 72
V G + F GG Q ++Y L + L L+ + SA TL L
Sbjct: 149 VGEGNAQLVAIF-GG-QGNTDDYFEEL-----RDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 73 IVTYGTQFV-VINISYVLATPIVAH--IYL---PVFFKL-GAVSV--YEYLEKRFGSATR 123
+ F +NI L P YL P+ L G + + Y K G
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP- 260
Query: 124 LAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYSTIG-------G 176
L ++ L A+A+ F+ + LF+ IG
Sbjct: 261 --GELRSYLKGATGHSQGLVT-AVAIAETDSWESFFVSVRKAITVLFF--IGVRCYEAYP 315
Query: 177 IKAVILTDVFQSI--------LMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLS 228
++ + + S+ M + ++ + + + + N L
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLS-------ISNLTQEQVQDY--VNKTNSHL------ 360
Query: 229 PDPTTRHSWFTLIIGG-IFTYC----SLYGIN-------------QMQV---QRYLTMKD 267
P + +L+ G SLYG+N Q ++ +R
Sbjct: 361 --PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER------ 412
Query: 268 YKTAYLRPNVNNPTSNIFLFCFSLSPDPTTR--HSWF-----TLIIGGIFTYCSLYGINQ 320
+ SN FL P HS LI + +
Sbjct: 413 ------KLKF----SNRFL--------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 321 MQVQRYLT-----MKDYKT--------AVRSLWVSWPLLTLLSVST--CF-----SGLA 359
+Q+ Y T ++ + L V W T + F SGL
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Score = 48.1 bits (114), Expect = 4e-06
Identities = 49/328 (14%), Positives = 93/328 (28%), Gaps = 87/328 (26%)
Query: 61 MSAITLMGLSAEIVTYGTQFVVINISYVLATPIVAHIYLPV----FFK-LGAVSVYEYLE 115
M A + L +++G ++ +VL P + F K L + +
Sbjct: 1 MDAYSTRPL---TLSHG------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 116 KRFGSATRLAAS-LAFTVQMVLYMGIALYAPAIALEAVMGLSQFYSITLVG-----LVCL 169
+ L L + +V + + L L++F + L G L
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV--LNLC--LTEFENCYLEGNDIHALA-- 105
Query: 170 FYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRLEFFNLSP 229
+ + L + I Y + A + + + F
Sbjct: 106 --AKLLQENDTTLVKTKELIKNY--------ITARIMAKRPF--DKKSNS---ALFRAVG 150
Query: 230 DPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLT-MKD-YKTAYLRPNVNNPTSNIFLF 287
+ + I GG Q Y ++D Y+T Y V +
Sbjct: 151 EGNAQ---LVAIFGG-----------QGNTDDYFEELRDLYQT-Y-HVLVGDLIKFSAET 194
Query: 288 CFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTM------KDYKTAVRSLWV 341
L FT G+N + +L KDY + S+ +
Sbjct: 195 LSELIRTTLDAEKVFT------------QGLN---ILEWLENPSNTPDKDY---LLSIPI 236
Query: 342 SWPLLTLLSVSTCFSGLAIYASYHNCDP 369
S PL+ ++ ++ + + A P
Sbjct: 237 SCPLIGVIQLA-HY---VVTAKLLGFTP 260
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 43.8 bits (102), Expect = 1e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 18/43 (41%)
Query: 115 EKRFGSATRLAASLAFTVQMVLYMGIALY----APAIALEAVM 153
EK+ + +L ASL LY APA+A++A M
Sbjct: 18 EKQ--ALKKLQASLK------------LYADDSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 3e-04
Identities = 65/309 (21%), Positives = 106/309 (34%), Gaps = 83/309 (26%)
Query: 64 ITLMGLSAEIVTYGTQFV--VINISY-VLATPIVAHIYLPVFFKLGAVSVYEYLEKRFGS 120
TL+ E+V +FV V+ I+Y L +PI P ++ Y+E+R
Sbjct: 69 WTLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKTEQRQP------SMMTRMYIEQR--- 116
Query: 121 ATRLAASLAFTVQMVLYMGIALYAPAIAL-EAVMGLSQFYSITLVGLVCLFYSTIGGI-K 178
RL Q+ ++ P + L +A++ L ++ + G+ G K
Sbjct: 117 -DRLYND----NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV--------LGSGK 163
Query: 179 AVILTDVFQS----ILMYAAIFAVIIVAAINVGGIGEIW-NIAHRN---DRLE-----FF 225
+ DV S M IF W N+ + N LE +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF----------------WLNLKNCNSPETVLEMLQKLLY 207
Query: 226 NLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQ--VQRYLTMKDYKTAY--LRPNVNNPT 281
+ P+ T+R + I I+ +Q ++R L K Y+ L NV N
Sbjct: 208 QIDPNWTSRSDHSSNIK---------LRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAK 257
Query: 282 S-NIFLF-CFSLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAVRSL 339
+ N F C L TTR T + T I+ LT D ++
Sbjct: 258 AWNAFNLSCKILL---TTRFKQVTDFLSAATT----THISLDHHSMTLT-PDEVKSLLLK 309
Query: 340 WVSWPLLTL 348
++ L
Sbjct: 310 YLDCRPQDL 318
Score = 27.9 bits (61), Expect = 7.6
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 25/104 (24%)
Query: 111 YEYL---------EKRFGSATRLAASLAFTVQMVLYMGIALYAPAIALEAVMGLSQFYS- 160
Y ++ +R + F Q + + A A L + L +FY
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKP 532
Query: 161 -IT--------LVGLVCLFYSTIGGIKAVIL---TDVFQSILMY 192
I LV + F I + +I TD+ + LM
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDLLRIALMA 574
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural
genomics consortium, SGC, transferase; 2.00A {Plasmodium
vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A*
3ph7_A* 3rbm_A*
Length = 395
Score = 28.0 bits (62), Expect = 5.7
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 15/111 (13%)
Query: 163 LVGLVCLFYSTIGGIKAVILTDVFQSILMYAAIFAVIIVAAINVGGIGEIWNIAHRNDRL 222
V V L Y++I ++ ++ Y + A A + IG+ +
Sbjct: 151 AVNDVLLLYNSI----YKLIEIYLRNESCYVDVIATFRDATLKTI-IGQHLDT------- 198
Query: 223 EFFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYL 273
N+ D + + + IN + Y + +KTAY
Sbjct: 199 ---NIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYY 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.427
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,706,540
Number of extensions: 343241
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 22
Length of query: 371
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,049,298
Effective search space: 1117606248
Effective search space used: 1117606248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.0 bits)