RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3961
         (371 letters)



>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated
           protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 124

 Score = 28.5 bits (63), Expect = 0.58
 Identities = 13/65 (20%), Positives = 22/65 (33%)

Query: 224 FFNLSPDPTTRHSWFTLIIGGIFTYCSLYGINQMQVQRYLTMKDYKTAYLRPNVNNPTSN 283
            +   P+  TR    +  I  I  YC    I  M V   +   +   +    N ++   +
Sbjct: 12  LYTRQPNSLTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKIS 71

Query: 284 IFLFC 288
             LF 
Sbjct: 72  KNLFN 76


>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 562

 Score = 29.4 bits (66), Expect = 0.89
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 121 ATRLAASLAFTV-QMVLYMGIALYAPAIALEAVMGLSQFYSITLVGLVCLFYS 172
               A++    +    L+ GI L AP      +     FY +     V   ++
Sbjct: 434 GANTASTTNMRIFDGALHAGILLMAPQHLDHTIQNGDYFYPLP----VHALFA 482


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,367,913
Number of extensions: 61574
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 10
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.9 bits)