RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3963
         (128 letters)



>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 67

 Score = 24.0 bits (52), Expect = 2.5
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 6/32 (18%)

Query: 44 YTMESTYCGFDQGSFKIGTKESMKIVRGLIEF 75
          Y+M+      D  S KI  +    I +G+++ 
Sbjct: 36 YSMD------DLASLKIPEQFRHAIWKGILDH 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 492,896
Number of extensions: 20927
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.5 bits)