BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3964
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
H +PD ++HAVLAVGYGE +G PYW VKNSW WG GY L+ N CG+ +Y
Sbjct: 158 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
S D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 156 SSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANLASFPKM 215
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
S D L+HAVLAVGYG G +W +KNSW WGN GY+LM+ K+N CG+ ++ M
Sbjct: 156 SSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANLASFPKM 215
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 156 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 157 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 214
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 158 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 257 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ NN CG+ ++ M
Sbjct: 160 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 217
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 164 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 216
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 165 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 217
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 214
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 260 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSY 312
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSY 214
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTY 62
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 162 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSY 214
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E DG YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 249 SSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 308
Query: 62 YVTM 65
Y T+
Sbjct: 309 YPTV 312
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
D L+HAVLAVGYGE G +W +KNSW WG GY+ M+ NN CG+ ++ M
Sbjct: 158 DNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANLASFPKM 215
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 253 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 312
Query: 62 YVTM 65
Y T+
Sbjct: 313 YPTV 316
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 195 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 254
Query: 62 YVTM 65
Y T+
Sbjct: 255 YPTV 258
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
Query: 62 YVTM 65
Y T+
Sbjct: 218 YPTV 221
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 158 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 217
Query: 62 YVTM 65
Y T+
Sbjct: 218 YPTV 221
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62 YVTM 65
Y T+
Sbjct: 217 YPTV 220
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62 YVTM 65
Y T+
Sbjct: 217 YPTV 220
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62 YVTM 65
Y T+
Sbjct: 217 YPTV 220
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62 YVTM 65
Y T+
Sbjct: 217 YPTV 220
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62 YVTM 65
Y T+
Sbjct: 217 YPTV 220
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S LDH VL VGYG D YW VKNSW WG+ GYV ++ K+N+CG+ TA +
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
Query: 62 Y 62
Y
Sbjct: 218 Y 218
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S LDH VL VGYG D YW VKNSW WG+ GYV ++ K+N+CG+ TA +
Sbjct: 158 SSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 217
Query: 62 Y 62
Y
Sbjct: 218 Y 218
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
+ LDH VL VGY + PYW +KNSW+T WG +GY+ ++ N C V
Sbjct: 158 EALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLV 205
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
SP +DHAVL VGYG+ P+W +KNSW T WG +GY + CGV T
Sbjct: 155 SPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNT 206
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM-SIKDNNCGVMTAPT 61
SP ++HAVLAVGYG G YW VKNSW WG +GY+ M + N CG+ + +
Sbjct: 247 SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLAS 302
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
+ LDH VL VGY + PYW +KNSW+T WG +GY+ ++ N C V
Sbjct: 158 EQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLV 205
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNC 54
LDH VL VGY + PYW +KNSW+T WG +GY+ ++ N C
Sbjct: 160 LDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNC 54
LDH VL VGY + PYW +KNSW+T WG +GY+ ++ N C
Sbjct: 160 LDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
+DHA++ VGYG G YW VKNSW T WG +GY M I N CG+ T P+Y
Sbjct: 160 VDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
+DHAV VGYG G YW VKNSW T WG +GY M I N CG+ T P+Y
Sbjct: 160 IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGY--MRILRNVGGAGTCGIATMPSY 214
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD--NNCGVMTAPTYVTM 65
L+H VL VGYG +G+ YW +KNSW + WG GY +++ NNCG+ TA +Y +
Sbjct: 274 LNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGY-WRQVRNYGNNCGIATAASYPAL 329
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 12 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
+H V+ VGYG GK YW V+NSW WGNQGY+ M + CG+ P+Y T
Sbjct: 157 NHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 11 LDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
L+HA+L VGYG + + + YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 161 LNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNC 54
LDH VL VGY + PYW +KNSWS WG GY+ + N C
Sbjct: 160 LDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQC 203
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 11 LDHAVLAVGYGE-LDGKPYWQVKNSWSTYWGNQGYVLM----SIKDNNCGVMTAPTY 62
LDH V VGYG +DG YW VKNSW WG +GY+ M S K+ CG+ +Y
Sbjct: 160 LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASY 216
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
LDHAV AVGYG DGK Y +KNSW WG +GY+ + + N CGV + Y
Sbjct: 157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYY 212
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 11 LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-----CGVMTAPTY 62
LDH V VGYG DGK YW VKNSW WG QGY+ + KD+ CG+ +Y
Sbjct: 165 LDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVE-KDSGASGGLCGIAMEASY 221
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
HAV VG+G +G PYW++ NSW+T WG GY L+ + CG+
Sbjct: 282 HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 325
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
HAV VG+G +G PYW++ NSW+T WG GY L+ + CG+
Sbjct: 260 HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
HAV VG+G +G PYW++ NSW+T WG GY L+ + CG+
Sbjct: 259 HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 302
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
+DHAV VGYG G YW VKNSW T WG +GY M I+ N CG+ +Y
Sbjct: 160 VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY--MRIQRNVGGVGQCGIAKKASY 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN-----NCGVMTAPTY 62
+DHAV VGYG G YW VKNSW T WG +GY M I+ N CG+ +Y
Sbjct: 160 VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY--MRIQRNVGGVGQCGIAKKASY 214
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 11 LDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSI---KDNNCGVMTAPTYVTM 65
LDH VL VGYG + K +W +KNSW T WG GY+ M++ ++ CG++ ++ M
Sbjct: 165 LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPT 61
+SP G++H VL VGYG DG YW KNSW WG GY+ + N CG+ +
Sbjct: 161 SSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFAS 220
Query: 62 Y 62
Y
Sbjct: 221 Y 221
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN-CGVMTAPTYVTM 65
HAVL VGYG +G+ YW VKNSW WG GY ++ NN CG+ + T+
Sbjct: 276 FTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1 MRKGHNSPDGLDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
+R N + +HAVL VGYG G YW VKNSW T WG GY + + C + +
Sbjct: 369 LRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIES 428
Query: 59 APTYVT 64
T
Sbjct: 429 IAVAAT 434
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN--CGVMTAPTYVT 64
L+H V+ VGYG K YW V+NSW +WG QGY M CG+ P Y T
Sbjct: 155 LNHGVVIVGYG----KDYWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPT 206
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 262 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 307
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+ WG+ G+ + +N+CG+ +
Sbjct: 205 HAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+ WG+ G+ + +N+CG+ +
Sbjct: 261 HAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 199 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 201 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 246
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 199 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 205 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 250
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 200 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 245
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+ WG+ G+ + +N+CG+ +
Sbjct: 199 HAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 150 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 195
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 199 HAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 DHAVLAVGYGE--LDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
+HAVL VGYG+ + G YW VKNSW + WG GY + + C + +
Sbjct: 379 NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIES 427
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN--CGVMTAPTYVT 64
L+H V+ VGY K YW V+NSW YWG QGY+ M CG+ P Y T
Sbjct: 155 LNHGVVIVGYW----KDYWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPT 206
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 151 HAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor
Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 12 DHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
+HAVL VGYG G YW VKNSW T WG GY + + C + + T
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 64
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVTM 65
HAV VGYG G YW V+NSW T WG+ GY +N + P V M
Sbjct: 171 HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQYPYVVIM 223
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 12 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVL----MSIKDNNCGVMTAPTY 62
+HA+ VGYG + K +W VKNSW WG GY+ + D CG+ +Y
Sbjct: 160 NHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 5 HNSPDGLDHAVLAVGYGEL-DGKPYWQVKNSWSTYWGNQGYVLMSIKDN 52
+ P +DH VL VGYG YW VKNSW T WG GY+L+ N
Sbjct: 154 SDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTN 202
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
HAV VGY G YW V+NSW T WG+ GY
Sbjct: 250 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 9 DGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 49
D DHAV VGYG E + K YW V+NSW YWG++GY + +
Sbjct: 195 DTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 240
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 9 DGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI 49
D DHAV VGYG E + K YW V+NSW YWG++GY + +
Sbjct: 196 DTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 241
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
HAV VGY G YW V+NSW T WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
HAV VGY G YW V+NSW T WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGY 44
HAV VGY G YW V+NSW T WG+ GY
Sbjct: 170 HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
+DHAV AVGYG Y +KNSW T WG GY+ + N CGV++ + T
Sbjct: 157 IDHAVAAVGYG----NDYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPT 210
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 12 DHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
DHAV AVGYG K Y +KNSW WG +GY+ + CGV T+ +
Sbjct: 158 DHAVTAVGYG----KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+ Y
Sbjct: 157 VDHAVAAVGYG----PNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPT 61
HA+ +G+G + PYW + NSW+ WG GY + + C + + T
Sbjct: 201 HAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVT 249
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+ Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+ Y
Sbjct: 157 VDHAVAAVGYG----PNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+ Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+ Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+ Y
Sbjct: 157 VDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y ++NSW T WG GY+ + N CG+ T+ Y
Sbjct: 308 VDHAVAAVGYG----PNYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 359
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN--CGVMTAPTYVT 64
L+H V VGY YW V+NSW YWG +GY+ M CG+ P Y T
Sbjct: 155 LNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 28 YWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
YW VKNSW WG GYV M+ + N+CG+ +A +Y T+
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM 47
++H V G+G DG YW V+NSW WG +G++ +
Sbjct: 178 INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM 47
++H V G+G DG YW V+NSW WG +G++ +
Sbjct: 213 INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Query: 9 DGLDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 57
D L+HAV+ VG+G + + Y+ +KNSW WG +G++ +I+ + G+M
Sbjct: 170 DQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFI--NIETDESGLM 226
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Query: 9 DGLDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 57
D L+HAV+ VG+G + + Y+ +KNSW WG +G++ +I+ + G+M
Sbjct: 169 DQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFI--NIETDESGLM 225
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
+DHAV AVGYG+ GK Y +KNSW T WG +GY+ + N CG+ + Y T
Sbjct: 157 VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 12 DHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN 52
+HAV+ VGYG ++ Y+ +KNSW + WG GY+ + +N
Sbjct: 175 NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDEN 225
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 33.5 bits (75), Expect = 0.030, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
++HAV AVGYG+ GK Y +KNSW T WG +GY+ + N CG+ + Y T
Sbjct: 157 VEHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG+ GK Y +KNSW WG GY+ + N CGV + Y
Sbjct: 157 VDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYY 212
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
+D AV AVGYG+ GK Y +KNSW T WG +GY+ + N CG+ + Y T
Sbjct: 263 VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 320
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM 47
HAVL VGY D +++++NSW G GY M
Sbjct: 237 HAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWM 269
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 12 DHAVLAVGYGELDG-------KPYWQVKNSWSTYWGNQGYVLMSIKDNN 53
DHAV++ G L G KPYW WS + GYV + + D++
Sbjct: 354 DHAVVS---GRLAGENMTGAAKPYWHQSMFWSDLGPDVGYVAIGLVDSS 399
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 29 WQVKNSWSTYWGNQGYVLMS 48
W+V+NSW G++GY+ M+
Sbjct: 391 WRVENSWGEDHGHKGYLCMT 410
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 29 WQVKNSWSTYWGNQGYVLMS 48
W+V+NSW G++GY+ M+
Sbjct: 391 WRVENSWGEDHGHKGYLCMT 410
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 43
N PDG++ A+ A+G + +WQ+ +ST G G
Sbjct: 37 NVPDGMEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTG 74
>pdb|2QVJ|A Chain A, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|B Chain B, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|C Chain C, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|D Chain D, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|2QVJ|E Chain E, Crystal Structure Of A Vesicular Stomatitis Virus
Nucleocapsid Protein Ser290trp Mutant
pdb|3HHW|K Chain K, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|L Chain L, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|M Chain M, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|N Chain N, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
pdb|3HHW|O Chain O, Complex Of A Vesicular Stomatitis Virus Empty Capsid With
The Nucleocapsid-Binding Domain Of The Phosphoprotein
Length = 421
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 18 VGYGELDGKPYWQVKNSWSTYWGNQGYVLM 47
+ +G PYW VKN +WG +L+
Sbjct: 278 IDFGLSSKSPYWSVKNPAFHFWGQLTALLL 307
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 12 DHAVLAVGYGELDG-------KPYWQVKNSWSTYWGNQGYVLMSIKDNN 53
DHAV++ G L G KPYW WS + GY + + D++
Sbjct: 354 DHAVVS---GRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSS 399
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 43
N PDG++ A+ A+G + +WQ+ +ST G G
Sbjct: 38 NVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTG 75
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 12 DHAVLAVGYGELDG-------KPYWQVKNSWSTYWGNQGYVLMSIKDNN 53
DHAV++ G L G KPYW WS + GY + + D++
Sbjct: 336 DHAVVS---GRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSS 381
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 12 DHAVLAVGYGELDG-------KPYWQVKNSWSTYWGNQGYVLMSIKDNN 53
DHAV++ G L G KPYW WS + GY + + D++
Sbjct: 378 DHAVVS---GRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSS 423
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 6 NSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 43
N PDG++ A+ A+G + +WQ+ +ST G G
Sbjct: 37 NVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTG 74
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 12 DHAVLAVGYGELDG-------KPYWQVKNSWSTYWGNQGYVLMSIKDNN 53
DHAV++ G L G KPYW WS + GY + + D++
Sbjct: 373 DHAVVS---GRLAGENMTGAAKPYWHQSMFWSDLGPDVGYEAIGLVDSS 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,483,473
Number of Sequences: 62578
Number of extensions: 89271
Number of successful extensions: 364
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 118
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)