RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3964
(65 letters)
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 87.7 bits (218), Expect = 1e-23
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
S L+HAVL VGYG +G YW VKNSW T WG +GY+ ++ N CG+ + +Y
Sbjct: 154 SNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 81.4 bits (202), Expect = 3e-21
Identities = 28/54 (51%), Positives = 34/54 (62%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
LDHAVL VGYG +G PYW VKNSW T WG GY ++ N CG+ + +Y
Sbjct: 160 LDHAVLIVGYGTENGVPYWIVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 73.8 bits (182), Expect = 1e-18
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 7 SPDGLDHAVLAVGYGE--LDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYV 63
LDHAVL VGYG +GK YW VKNSW T WG GY ++ K+N CG+ +
Sbjct: 115 GSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVASY 174
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 58.4 bits (142), Expect = 2e-12
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG 55
HAV +G+G +G PYW NSW T WG GY + N CG
Sbjct: 186 HAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECG 228
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 55.6 bits (134), Expect = 3e-11
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 12 DHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 51
HAV+ VGY ++GK + VKNSW T WG+ GY +S +D
Sbjct: 172 GHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 55.1 bits (133), Expect = 7e-11
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 9 DGLDHAVLAVG--YGELDGKPYWQVKNSWSTYWGNQGYVLM---SIKDNNCGVMT 58
L+HAVL VG Y E K YW +KNSW T WG GY+ + + + CG++T
Sbjct: 384 KSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILT 438
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 52.8 bits (127), Expect = 3e-10
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 11 LDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
+HAVL VG+G E+ G+ YW VKNSW + WG +GY + N CG+ + +
Sbjct: 186 TNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAY 241
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 52.4 bits (125), Expect = 7e-10
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAP 60
L+H VL VGY PYW +KNSW WG +GYV +++ N C + P
Sbjct: 286 LNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYP 335
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 48.5 bits (115), Expect = 1e-08
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 9 DGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGY 44
D DHAV VGYG E + K YW V+NSW YWG++GY
Sbjct: 719 DTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGY 759
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 44.2 bits (104), Expect = 5e-07
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 9 DGLDHAVLAVGYGE--LDGKP--YWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
+ ++HA++ VG+GE ++GK YW +NSW WG +GY + N G+ + ++
Sbjct: 616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFI 674
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 41.4 bits (97), Expect = 4e-06
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 13 HAVLAVGYGEL----------DGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAP 60
HAVL VGY + G + +KNSW T WG GY +S G A
Sbjct: 266 HAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALNGDAEAL 323
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 40.5 bits (95), Expect = 1e-05
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 6 NSPDGL-DHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGY 44
D L +H + G+G + +G YW V+NSW WG +G+
Sbjct: 172 YVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGW 212
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 36.7 bits (85), Expect = 2e-04
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 9 DGLDHAVLAVGYG------ELDGKP----YWQVKNSWSTYWGNQGYVLMSIKDNNCGVM 57
+ +HAV+ VGYG K Y+ +KNSW WG +G+ + I+ + G+M
Sbjct: 418 EEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGF--IRIETDENGLM 474
>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family
is closely related to the Peptidase_C1 family pfam00112,
containing several prokaryotic and eukaryotic
aminopeptidases and bleomycin hydrolases.
Length = 438
Score = 35.0 bits (81), Expect = 8e-04
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 11 LDHAVLAVGYGELDGKPY--WQVKNSWSTYWGNQGYVLMS 48
+ HA++ G E D W+V+NSW G +GY +MS
Sbjct: 359 MTHAMVLTGVDEDDDGKPTKWKVENSWGDDSGKKGYFVMS 398
>gnl|CDD|226107 COG3579, PepC, Aminopeptidase C [Amino acid transport and
metabolism].
Length = 444
Score = 32.5 bits (74), Expect = 0.007
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 11 LDHAVLAVGYGEL-DGKPY-WQVKNSWSTYWGNQGYVLMS 48
+ HA++ G G P W+V+NSW G +GY + S
Sbjct: 361 MTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVAS 400
>gnl|CDD|238328 cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database
nomenclature); composed of eukaryotic bleomycin
hydrolases (BH) and bacterial aminopeptidases C (pepC).
The proteins of this subfamily contain a large insert
relative to the C1A peptidase (papain) subfamily. BH is
a cysteine peptidase that detoxifies bleomycin by
hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. Bleomycin, a glycopeptide derived from the
fungus Streptomyces verticullus, is an effective
anticancer drug due to its ability to induce DNA strand
breaks. Human BH is the major cause of tumor cell
resistance to bleomycin chemotherapy, and is also
genetically linked to Alzheimer's disease. In addition
to its peptidase activity, the yeast BH (Gal6) binds DNA
and acts as a repressor in the Gal4 regulatory system.
BH forms a hexameric ring barrel structure with the
active sites imbedded in the central channel. The
bacterial homolog of BH, called pepC, is a cysteine
aminopeptidase possessing broad specificity. Although
its crystal structure has not been solved, biochemical
analysis shows that pepC also forms a hexamer. .
Length = 437
Score = 31.0 bits (71), Expect = 0.023
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 24 DGKPY-WQVKNSWSTYWGNQGYVLMS 48
DGKP W+V+NSW G +GY +MS
Sbjct: 372 DGKPVKWKVENSWGEKVGKKGYFVMS 397
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 30.6 bits (69), Expect = 0.026
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 11 LDHAVLAVGYGELD-GKPYWQVKNSWSTY--WGNQGYVLMSIKDNNCGVMTAPT 61
++H VL +G+G + G YW V + W + W + G ++ N + +
Sbjct: 402 VNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVV 455
>gnl|CDD|182581 PRK10600, PRK10600, nitrate/nitrite sensor protein NarX;
Provisional.
Length = 569
Score = 28.9 bits (65), Expect = 0.12
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 41 NQGYVLMSIKDNNCGV 56
NQ V +S++DN CGV
Sbjct: 497 NQNQVKLSVQDNGCGV 512
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 28.4 bits (63), Expect = 0.17
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQG 43
D A+ AV +G + G+ Y + W TY+G+ G
Sbjct: 56 YDIALWAVPFGLIGGRLY-HLATDWRTYFGDGG 87
>gnl|CDD|236113 PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.
Length = 510
Score = 25.7 bits (57), Expect = 1.5
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 17 AVGYGELDGKPYWQ--VKNSW 35
AVGY + G P+ Q VKN++
Sbjct: 317 AVGYAQESGIPFGQGLVKNAY 337
>gnl|CDD|225584 COG3042, Hlx, Putative hemolysin [General function prediction
only].
Length = 85
Score = 25.1 bits (55), Expect = 1.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 26 KPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
Y + N S Y QG L ++K + GV
Sbjct: 30 PFYVGMANPASVYCAQQGGTLEAVKREDGGV 60
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 25.7 bits (57), Expect = 1.8
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 10 GLDHAVLAVGYGELDGKPYWQVKNSWSTYW----GNQGYVLMSIKDN 52
G AV +G +L G W +K + Y+ ++ V +
Sbjct: 351 GDFSAVADLGGVKLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTT 397
>gnl|CDD|143481 cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Alanine Racemase. This family
includes predominantly bacterial alanine racemases (AR),
some serine racemases (SerRac), and putative
bifunctional enzymes containing N-terminal
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase (murF) and C-terminal AR domains. These proteins
are fold type III PLP-dependent enzymes that play
essential roles in peptidoglycan biosynthesis. AR
catalyzes the interconversion between L- and D-alanine,
which is an essential component of the peptidoglycan
layer of bacterial cell walls. SerRac converts L-serine
into its D-enantiomer (D-serine) for peptidoglycan
synthesis. murF catalyzes the addition of D-Ala-D-Ala to
UDPMurNAc-tripeptide, the final step in the synthesis of
the cytoplasmic precursor of bacterial cell wall
peptidoglycan. Members of this family contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain. They exist as
homodimers with active sites that lie at the interface
between the TIM barrel domain of one subunit and the
beta-sandwich domain of the other subunit. AR and other
members of this family require dimer formation and the
presence of the PLP cofactor for catalytic activity.
Fungal ARs and eukaryotic serine racemases, which are
fold types I and II PLP-dependent enzymes respectively,
are excluded from this family.
Length = 367
Score = 24.8 bits (55), Expect = 3.7
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 11/33 (33%)
Query: 14 AVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVL 46
A L VGY DG + N+G VL
Sbjct: 273 ATLPVGYA--DG---------YPRALSNKGEVL 294
>gnl|CDD|237401 PRK13499, PRK13499, rhamnose-proton symporter; Provisional.
Length = 345
Score = 23.8 bits (52), Expect = 8.0
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 27 PYWQVKN-SWSTYWGNQGYV 45
P+ +VK SW T W G
Sbjct: 25 PFKKVKKWSWETMWSVGGIF 44
>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth
factor receptor kinase substrate 8 and similar
proteins. This group is composed of Eps8 and Eps8-like
proteins including Eps8-like 1-3, among others. These
proteins contain N-terminal Phosphotyrosine-binding
(PTB), central SH3, and C-terminal effector domains.
Eps8 binds either Abi1 (also called E3b1) or Rab5
GTPase activating protein RN-tre through its SH3
domain. With Abi1 and Sos1, it becomes part of a
trimeric complex that is required to activate Rac.
Together with RN-tre, it inhibits the internalization
of EGFR. The SH3 domains of Eps8 and similar proteins
recognize peptides containing a PxxDY motif, instead of
the classical PxxP motif. SH3 domains are protein
interaction domains that usually bind to proline-rich
ligands with moderate affinity and selectivity. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 54
Score = 22.6 bits (49), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 24 DGKPYWQVKNSWSTYWGNQGYV 45
D + +W+V+NS G GYV
Sbjct: 29 DSRQWWKVRNS----RGQVGYV 46
>gnl|CDD|238303 cd00542, Ntn_PVA, Penicillin V acylase (PVA), also known as
conjugated bile salt acid hydrolase (CBAH), catalyzes
the hydrolysis of penicillin V to yield 6-amino
penicillanic acid (6-APA), an important key intermediate
of semisynthetic penicillins. PVA has an N-terminal
nucleophilic cysteine, as do other members of the Ntn
hydrolase family to which PVA belongs. This
nucleophilic cysteine is exposed by post-translational
prossessing of the PVA precursor. PVA forms a
homotetramer.
Length = 303
Score = 23.3 bits (51), Expect = 9.9
Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 47 MSIKDNNCGVMT-APTY 62
+ + DN GV+T +P +
Sbjct: 162 LKVYDNPVGVLTNSPDF 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.449
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,249,029
Number of extensions: 216978
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 26
Length of query: 65
Length of database: 10,937,602
Length adjustment: 36
Effective length of query: 29
Effective length of database: 9,340,858
Effective search space: 270884882
Effective search space used: 270884882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)