RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3964
(65 letters)
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 102 bits (257), Expect = 2e-29
Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
H +PD ++HAVLAVGYGE +G PYW VKNSW WG GY L+ N CG+ +Y
Sbjct: 158 HKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 215
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 102 bits (257), Expect = 8e-29
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 4 GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
N HAV VGY G YW V+NSW T WG+ GY + + + P V
Sbjct: 241 RDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVV 300
Query: 64 TM 65
+
Sbjct: 301 IL 302
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 100 bits (251), Expect = 1e-28
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 4 GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
N HAV VGY G YW V+NSW T WG+ GY + + + P V
Sbjct: 161 RDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVV 220
Query: 64 TM 65
+
Sbjct: 221 IL 222
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 99.6 bits (249), Expect = 1e-27
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS-IKDNNCGVMTAPTYVTM 65
+ HAVL VGYG +G+ YW VKNSW WG GY ++ +N+CG+ + T+
Sbjct: 272 ETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 97.2 bits (243), Expect = 1e-27
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 4 GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYV 63
SP +DHAVL VGYG+ P+W +KNSW T WG +GY + CGV T +
Sbjct: 152 PLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSA 211
Query: 64 TM 65
+
Sbjct: 212 VV 213
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 95.6 bits (239), Expect = 6e-27
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
+ D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ K+N CG+ ++ M
Sbjct: 156 NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 94.1 bits (235), Expect = 3e-26
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
+ LDH VL VGY + PYW +KNSW+T WG +GY+ ++ N C V +
Sbjct: 156 VSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAV 213
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 96.2 bits (240), Expect = 3e-26
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
+ D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ K+N CG+ ++ M
Sbjct: 255 NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 314
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 95.0 bits (237), Expect = 7e-26
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
+ L+H VL VGYG +G+ YW +KNSW + WG GY NNCG+ TA +Y +
Sbjct: 270 NQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYPAL 329
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 92.2 bits (230), Expect = 2e-25
Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y +
Sbjct: 163 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 93.8 bits (234), Expect = 2e-25
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
SP ++HAVLAVGYG G YW VKNSW WG +GY+ M + N CG+ + + +
Sbjct: 247 SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 93.1 bits (232), Expect = 4e-25
Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYVTM 65
++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y +
Sbjct: 260 VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 315
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 91.2 bits (227), Expect = 8e-25
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 7 SPDGLDHAVLAVGYG-----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAP 60
D DHAV VGYG E + K YW V+NSW YWG++GY + + +C
Sbjct: 194 GDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIH 253
Query: 61 TYVT 64
+ V
Sbjct: 254 SVVI 257
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 89.6 bits (223), Expect = 2e-24
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
SP G++H VL VGYG DG YW KNSW WG GY+ + CG+ +Y
Sbjct: 162 SPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASY 221
Query: 63 VTM 65
+
Sbjct: 222 PII 224
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 88.4 bits (220), Expect = 4e-24
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 157 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 216
Query: 62 YVTM 65
Y T+
Sbjct: 217 YPTV 220
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 87.6 bits (218), Expect = 9e-24
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS---IKDNNCGVMTAPTYVTM 65
+DHAV VGYG G YW VKNSW T WG +GY+ + CG+ +Y
Sbjct: 160 VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVK 217
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 89.2 bits (222), Expect = 1e-23
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 7 SPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPT 61
S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG+ +A +
Sbjct: 253 SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAAS 312
Query: 62 YVTM 65
Y T+
Sbjct: 313 YPTV 316
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 85.6 bits (213), Expect = 4e-23
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG+ GK Y +KNSW T WG +GY+ + N CG+ + Y
Sbjct: 157 VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYY 212
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 85.4 bits (212), Expect = 3e-22
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 65
+D AV AVGYG+ GK Y +KNSW T WG +GY+ + N CG+ + Y T
Sbjct: 263 VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 321
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 83.4 bits (207), Expect = 4e-22
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 11 LDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMS---IKDNNCGVMTAPTYVTM 65
LDH VL VGYG + K +W +KNSW T WG GY+ M+ ++ CG++ ++ M
Sbjct: 165 LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 83.4 bits (207), Expect = 4e-22
Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 11 LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 65
LDH V VGYG +DG YW VKNSW WG +GY+ M K+ CG+ +Y
Sbjct: 160 LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK 219
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 83.0 bits (206), Expect = 5e-22
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 65
LDHAV AVGYG DGK Y +KNSW WG +GY+ + + N CGV + Y
Sbjct: 157 LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 81.8 bits (203), Expect = 1e-21
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVT 64
+H V+ VGYG GK YW V+NSW WGNQGY+ M + CG+ P+Y T
Sbjct: 156 QNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 81.8 bits (203), Expect = 1e-21
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
+HA+ VGYG + K +W VKNSW WG GY+ D CG+ +Y
Sbjct: 159 ANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASY 214
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 81.9 bits (203), Expect = 2e-21
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 11 LDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGV 56
+HAV+ VGYG ++ Y+ +KNSW + WG GY+ + C +
Sbjct: 174 PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSI 233
Query: 57 MTAPTYVTM 65
T +
Sbjct: 234 GTEAYVPLL 242
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 80.6 bits (200), Expect = 5e-21
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTYVTM 65
DHAV AVGYG K Y +KNSW WG +GY+ + CGV T+ +
Sbjct: 157 TDHAVTAVGYG----KTYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 78.8 bits (195), Expect = 3e-20
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 11 LDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGV 56
L+HAV+ VG+G + + Y+ +KNSW WG +G++ + ++ CG+
Sbjct: 172 LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGL 231
Query: 57 MTAPTYVTM 65
T +
Sbjct: 232 GTDAFIPLI 240
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 78.9 bits (195), Expect = 5e-20
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 3 KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLM--------SIKDNNC 54
+ ++H V G+G DG YW V+NSW WG +G++ + N
Sbjct: 205 AEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL 264
Query: 55 GVMTAPTY 62
+ T+
Sbjct: 265 AIEEHCTF 272
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 78.5 bits (194), Expect = 5e-20
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 11 LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTYVTM 65
LDH V VGYG DGK YW VKNSW WG QGY+ + CG+ +Y
Sbjct: 165 LDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 78.6 bits (194), Expect = 1e-19
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 3 KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
+ HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 252 QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVA 311
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 79.1 bits (195), Expect = 1e-19
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 2 RKGHNSPDGLDHAVLAVGYGE--LDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTA 59
R N + +HAVL VGYG G YW VKNSW T WG GY + + C + +
Sbjct: 370 RDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESI 429
Query: 60 PTYVT 64
T
Sbjct: 430 AVAAT 434
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 76.3 bits (189), Expect = 2e-19
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + CGV++ +
Sbjct: 157 IDHAVAAVGYG----NDYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVF 208
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 77.3 bits (191), Expect = 2e-19
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 3 KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
K HA+ +G+G + PYW + NSW+ WG GY + + C + + T
Sbjct: 191 KHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTA 250
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 76.0 bits (188), Expect = 2e-19
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAPTY 62
+DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+ Y
Sbjct: 157 VDHAVAAVGYG----PNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 208
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 77.8 bits (192), Expect = 2e-19
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 3 KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
+ HAV VG+G +G PYW++ NSW+T WG GY L+ + CG+ +
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSA 309
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 75.8 bits (187), Expect = 6e-19
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 3 KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGV 56
+ HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+
Sbjct: 195 QHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 248
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 72.6 bits (178), Expect = 5e-18
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 4 GHNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMT 58
+ P +DH VL VGYG YW VKNSW T WG GY+L+ D C +
Sbjct: 153 CSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDA 212
Query: 59 APTYVTM 65
+Y T
Sbjct: 213 WGSYPTK 219
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 71.4 bits (175), Expect = 3e-17
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS-IKDNNCGVMT 58
N HAVL VGY D +++++NSW G GY M +N +
Sbjct: 229 KNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQLAD 281
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 69.2 bits (170), Expect = 9e-17
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS--IKDNNCGVMTAPTY 62
L+H V VGY YW V+NSW YWG +GY+ M CG+ P Y
Sbjct: 151 CGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYY 204
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 44.1 bits (103), Expect = 3e-07
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 11 LDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS 48
DH + G + +G Y+ VKNSW T G S
Sbjct: 316 DDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYAS 354
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 33.9 bits (77), Expect = 0.001
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 12 DHAVLAVGYGELDGK---PYWQVKNSWSTYWGNQGYVLMS 48
A+L G + ++V+NSW G G +M+
Sbjct: 372 TAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMT 411
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 33.2 bits (75), Expect = 0.002
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 12 DHAVLAVGYGELD---GKP-YWQVKNSWSTYWGNQGYVLMS 48
HA+ E D G W+V+NSW G++GY+ M+
Sbjct: 370 THAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMT 410
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 1.2
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 12/42 (28%)
Query: 11 LDHAVLAVGYGELDGKPYWQVKNSW---STYWGNQGYVLMSI 49
L+ ++ G+ E+ W T W + + S+
Sbjct: 816 LERVIVVTGFAEV---------GPWGSARTRWEMEAFGEFSL 848
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure
initiat midwest center for structural genomics, MCSG,
unknown funct; 1.74A {Bacillus subtilis subsp} SCOP:
d.17.1.6 d.17.1.6
Length = 136
Score = 25.3 bits (55), Expect = 1.5
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 51
+GL V W+V ++ G +
Sbjct: 87 EGLVSKQKEVHLAREGNVLLWEV--TYLDKEGQYSLSYVDFTT 127
>3o3v_A Beta-lactamase, CLBP protein; alpha/beta, disulfide bridge,
hydrolase; 2.40A {Escherichia coli}
Length = 335
Score = 24.6 bits (54), Expect = 2.4
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 16 LAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 51
A GY GKP + Y+ ++ D
Sbjct: 195 KASGYKLGFGKPVLFHAPLARNHVPA-AYIHSTLPD 229
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 24.0 bits (52), Expect = 4.7
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 11/46 (23%)
Query: 13 HAVLAVGYGELDGKPYWQ-VKNSWSTYWG-----NQGYVLMSIKDN 52
+ +L Y P Q + W + ++ S D
Sbjct: 502 YPLLLDVYAG----PCSQKADTVFRLNWATYLASTENIIVASF-DG 542
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 23.6 bits (51), Expect = 5.5
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 1 MRKGHNSPDGLDHAVLAVGYGELDGKPYWQ-VKNSWSTYWG-----NQGYVLMSIKDN 52
+ K D + +L V G P Q V + W + G V++ D
Sbjct: 484 ILKPATFTDTTHYPLLLVVDGT----PGSQSVAEKFEVSWETVMVSSHGAVVVKC-DG 536
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.449
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,048,621
Number of extensions: 45249
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 49
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)