RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3964
(65 letters)
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 74.3 bits (181), Expect = 1e-18
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTYVT 64
N HAV VGY G YW V+NSW T WG+ GY + + + P V
Sbjct: 239 DNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVI 298
Query: 65 M 65
+
Sbjct: 299 L 299
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId:
9606]}
Length = 316
Score = 69.3 bits (168), Expect = 1e-16
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 1 MRKGHNSPDGLDHAVLAVGYG----ELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCG 55
+ S + +DH VL VGYG E D YW VKNSW WG GYV M+ + N+CG
Sbjct: 247 YFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 306
Query: 56 VMTAPTYVTM 65
+ +A +Y T+
Sbjct: 307 IASAASYPTV 316
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 254
Score = 65.7 bits (159), Expect = 1e-15
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 13 HAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
HA+ +G+G +G PYW V NSW+T WG+ G+ + ++CG+ +
Sbjct: 200 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVA 249
>g8pch.1 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [TaxId:
9823]}
Length = 228
Score = 64.6 bits (156), Expect = 2e-15
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 3 KGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
H +PD ++HAVLAVGYGE +G PYW VKNSW WG GY L+ N CG+ +Y
Sbjct: 164 SCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 223
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens)
[TaxId: 9606]}
Length = 217
Score = 63.8 bits (154), Expect = 4e-15
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTAPTYV 63
+ ++H VL VGYG+L+GK YW VKNSW +G +GY+ M+ K N+CG+ + P+Y
Sbjct: 156 PSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
Query: 64 TM 65
+
Sbjct: 216 EI 217
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 214
Score = 62.6 bits (151), Expect = 1e-14
Identities = 26/59 (44%), Positives = 33/59 (55%)
Query: 4 GHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
SP +DHAVL VGYG+ P+W +KNSW T WG +GY + CGV T +
Sbjct: 152 PLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}
Length = 215
Score = 60.8 bits (146), Expect = 6e-14
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMTAPTY 62
+ LDH VL VGY + PYW +KNSW+T WG +GY+ ++ N C V +
Sbjct: 154 SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASS 211
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId:
3649]}
Length = 218
Score = 60.4 bits (145), Expect = 1e-13
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAP 60
LDHAV AVGYG DGK Y +KNSW WG +GY+ + + N CGV +
Sbjct: 151 GPCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSS 210
Query: 61 TY 62
Y
Sbjct: 211 YY 212
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId:
9606]}
Length = 275
Score = 60.1 bits (144), Expect = 2e-13
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 1 MRKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCG 55
+ + ++H V G+G DG YW V+NSW WG +G++ + G
Sbjct: 201 IYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDG 255
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 59.2 bits (142), Expect = 3e-13
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 1 MRKGHNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCGVMTA 59
+ D L+HAVLAVGYG G +W +KNSW WGN+GY+LM+ K+N CG+
Sbjct: 150 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 209
Query: 60 PTYVTM 65
++ M
Sbjct: 210 ASFPKM 215
>g1k3b.1 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase I),
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 59.3 bits (142), Expect = 3e-13
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 1 MRKGHNSPDGLDHAVLAVGYG--ELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNCGVMT 58
+R N + +HAVL VGYG G YW VKNSW T WG GY + + C + +
Sbjct: 163 LRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIES 222
Query: 59 APTYVT 64
T
Sbjct: 223 IAVAAT 228
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica
papaya) [TaxId: 3649]}
Length = 216
Score = 57.7 bits (138), Expect = 1e-12
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAP 60
+DHAV AVGYG+ GK Y +KNSW T WG +GY+ + N CG+ +
Sbjct: 151 GPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS 210
Query: 61 TYVT 64
Y T
Sbjct: 211 YYPT 214
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit
(Actinidia chinensis) [TaxId: 3625]}
Length = 218
Score = 57.3 bits (137), Expect = 1e-12
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS---IKDNNCGVMTAPT 61
+DHAV VGYG G YW VKNSW T WG +GY+ + CG+ T P+
Sbjct: 154 GPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPS 213
Query: 62 Y 62
Y
Sbjct: 214 Y 214
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean
(Ricinus communis) [TaxId: 3988]}
Length = 224
Score = 54.6 bits (130), Expect = 1e-11
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 5 HNSPDGLDHAVLAVGYG-ELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTA 59
+ LDH V VGYG +DG YW VKNSW WG +GY+ M K+ CG+
Sbjct: 154 GSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAME 213
Query: 60 PTY 62
+Y
Sbjct: 214 ASY 216
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger
rhizome (Zingiber officinale) [TaxId: 94328]}
Length = 216
Score = 54.6 bits (130), Expect = 1e-11
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAP 60
+ +HA+ VGYG + K +W VKNSW WG GY+ D CG+
Sbjct: 151 GSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFA 210
Query: 61 TY 62
+Y
Sbjct: 211 SY 212
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum
[TaxId: 5833]}
Length = 241
Score = 54.2 bits (129), Expect = 2e-11
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 5 HNSPDGLDHAVLAVGYG----------ELDGKPYWQVKNSWSTYWGNQGYVLMS----IK 50
D L+HAV+ VG+G + + Y+ +KNSW WG +G++ +
Sbjct: 166 GECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGL 225
Query: 51 DNNCGVMTAPTYVTM 65
CG+ T +
Sbjct: 226 MRKCGLGTDAFIPLI 240
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId:
9606]}
Length = 221
Score = 53.1 bits (126), Expect = 5e-11
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 1 MRKGHNSPDGLDHAVLAVGY----GELDGKPYWQVKNSWSTYWGNQGYVLMSI-KDNNCG 55
+ S LDH VL VGY D YW VKNSW WG+ GYV ++ K+N+CG
Sbjct: 152 YFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCG 211
Query: 56 VMTAPTYVTM 65
+ TA +Y +
Sbjct: 212 IATAASYPNV 221
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia
coronaria) [TaxId: 52861]}
Length = 215
Score = 52.3 bits (124), Expect = 9e-11
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS----IKDNNCGVMTAP 60
+H V+ VGYG GK YW V+NSW WGNQGY+ M CG+ P
Sbjct: 150 GPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLP 209
Query: 61 TYVT 64
+Y T
Sbjct: 210 SYPT 213
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
coronaria) [TaxId: 52861]}
Length = 208
Score = 51.9 bits (123), Expect = 1e-10
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMS--IKDNNCGVMTAPTY 62
L+H V VGY YW V+NSW YWG +GY+ M CG+ P Y
Sbjct: 149 GPCGTKLNHGVTIVGYQ----ANYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYY 204
Query: 63 VT 64
T
Sbjct: 205 PT 206
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
Length = 212
Score = 47.0 bits (110), Expect = 9e-09
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 5 HNSPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNN----CGVMTAP 60
+ +DHAV AVGYG Y +KNSW T WG GY+ + N CG+ T+
Sbjct: 151 GPCGNKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSS 206
Query: 61 TY 62
Y
Sbjct: 207 FY 208
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
(Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
Length = 458
Score = 44.2 bits (104), Expect = 9e-08
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 11 LDHAVLAVGYG--ELDGKP-YWQVKNSWSTYWGNQGYVLMS 48
+ HA+L G E P ++V+NSW G G +M+
Sbjct: 372 MTHAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMT 412
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 453
Score = 42.6 bits (100), Expect = 4e-07
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 12 DHAVLAVGYG---ELDGKP-YWQVKNSWSTYWGNQGYVLMS 48
HA+ + DG W+V+NSW G++GY+ M+
Sbjct: 370 THAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMT 410
>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Streptomyces avermitilis [TaxId: 33903]}
Length = 199
Score = 27.2 bits (60), Expect = 0.11
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 5 HNSPDGLDHAVLAVGYGELD 24
H + +DH V V G ++
Sbjct: 1 HRTFQAIDHCVGNVELGRMN 20
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 203
Score = 25.7 bits (56), Expect = 0.32
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 10 GLDHAVLAVGYGELD 24
+DH V G +
Sbjct: 5 VIDHLTHNVYRGRMV 19
>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Human (Homo sapiens) [TaxId: 9606]}
Length = 210
Score = 25.7 bits (56), Expect = 0.40
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 10 GLDHAVLAVGYGELD 24
+DH V E++
Sbjct: 24 IIDHIVGNQPDQEME 38
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB
{Bacillus subtilis [TaxId: 1423]}
Length = 63
Score = 23.6 bits (51), Expect = 0.96
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 9 DGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKD 51
+GL V W+V ++ G +
Sbjct: 14 EGLVSKQKEVHLAREGNVLLWEV--TYLDKEGQYSLSYVDFTT 54
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 23.4 bits (50), Expect = 2.2
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 25 GKPYWQVKNSWSTYW 39
G+ YW+V S W
Sbjct: 63 GRHYWEVDVGTSQVW 77
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
1280]}
Length = 183
Score = 23.0 bits (49), Expect = 3.3
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 6 NSPDG--LDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDN 52
+P+ L HA+ VG +++ + N W T + +
Sbjct: 121 QNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDT-----ELSIQDADSS 164
>d1ok3a2 g.18.1.1 (A:65-128) Complement decay-accelerating factor
(Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 21.3 bits (44), Expect = 8.2
Identities = 9/48 (18%), Positives = 12/48 (25%), Gaps = 4/48 (8%)
Query: 7 SPDGLDHAVLAVGYGELDGKPYWQVKNSWSTYWGNQGYVLMSIKDNNC 54
P L+ A L Y + P + Y GY
Sbjct: 4 VPTRLNSASLKQPYITQNYFPV----GTVVEYECRPGYRREPSLSPKL 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.449
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 263,570
Number of extensions: 9279
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 29
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.6 bits)