Query psy3965
Match_columns 535
No_of_seqs 530 out of 2777
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 21:51:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 8.5E-34 2.9E-38 295.1 20.9 336 159-530 58-428 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.2E-29 1.8E-33 255.8 19.2 329 158-532 64-407 (451)
3 3o7q_A L-fucose-proton symport 99.9 2E-27 6.7E-32 243.2 15.9 317 149-533 49-406 (438)
4 2gfp_A EMRD, multidrug resista 99.9 4.2E-27 1.4E-31 235.8 2.8 312 150-531 24-349 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 2E-24 6.9E-29 224.3 19.8 347 159-533 57-447 (491)
6 2xut_A Proton/peptide symporte 99.8 4.3E-21 1.5E-25 200.9 11.3 132 159-295 57-196 (524)
7 2cfq_A Lactose permease; trans 99.8 4E-22 1.4E-26 202.5 2.3 318 158-531 45-372 (417)
8 2cfq_A Lactose permease; trans 98.9 9.9E-10 3.4E-14 111.0 5.6 138 159-301 262-404 (417)
9 1pw4_A Glycerol-3-phosphate tr 98.8 1.2E-08 4.2E-13 103.7 10.2 134 159-297 291-433 (451)
10 4gc0_A D-xylose-proton symport 98.7 5E-08 1.7E-12 100.5 10.2 136 161-301 317-467 (491)
11 4aps_A DI-OR tripeptide H+ sym 98.7 2.3E-08 7.7E-13 103.1 6.9 131 159-294 322-468 (491)
12 3o7q_A L-fucose-proton symport 98.6 1E-07 3.4E-12 96.5 8.9 129 159-295 298-430 (438)
13 2xut_A Proton/peptide symporte 98.3 2.1E-06 7.1E-11 89.1 10.3 112 159-275 338-466 (524)
14 2gfp_A EMRD, multidrug resista 98.3 4.3E-07 1.5E-11 89.9 4.7 102 429-531 46-147 (375)
15 2g9p_A Antimicrobial peptide l 25.3 42 0.0014 17.2 1.6 13 438-450 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=8.5e-34 Score=295.08 Aligned_cols=336 Identities=18% Similarity=0.285 Sum_probs=239.6
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhh------------------ccchHHHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVA------------------ASPWFEGYLVL 220 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~------------------~~~s~~~l~~~ 220 (535)
+++.+++++|.++|++++|+ ++||+|||++++++.+++.+++++++ +++|+++++++
T Consensus 58 g~~~s~~~~G~~iG~~~~G~-----laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGY-----CSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 78999999999999999999 99999999999999999999999888 47899999999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh-----------cchhHHHHHHHHHHHH
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI-----------HSWRILQWVITAPTII 289 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~-----------~~Wr~~~~~~~~~~l~ 289 (535)
|+++|++.|+..+...++++|+.|+++|++..++.+.++.+|.++++.++... ..||+.+.+..++.++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999998887665 2588888888888888
Q ss_pred HHHHhhhcccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHH
Q psy3965 290 FLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQ 369 (535)
Q Consensus 290 ~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 369 (535)
..+..+++||||||+..+++.+++++.+++....+..+.+. .+.++... +.++.......++.+.........
T Consensus 213 ~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 213 FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV---QEIKHSLD----HGRKTGGRLLMFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHTTHHHHSCCTHHHHHHHHH
T ss_pred hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH---HHHHHHHH----hhhhhhhHHHHhcccHHHHHHHHH
Confidence 88888999999999999999999999998876543211000 00000000 011111222333334333322222
Q ss_pred HHHHh--hhHHhhhhhhhccCccCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCC
Q psy3965 370 YVVWF--SVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGR 447 (535)
Q Consensus 370 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 447 (535)
.+..+ .....+|...+. ...+.+...... ...+.++..+++.++++++.||+||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~l~dr~Gr 341 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVF-KTLGASTDIALL-----------------------QTIIVGVINLTFTVLAIMTVDKFGR 341 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhhhhHHHhcchHHH-HhcCCCccchhh-----------------------HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 22221 122223332221 111111100000 0012226778899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHH-hhhhhhhcccccchhhhhhHHHHHHHHHhHHHHH
Q psy3965 448 RRPLCLTTMAAGVACLVTLAF---PQGSWMTISLAMIGKFAISSS-NVVMPVYTAELFPTKMRNLGVGASSVPAGVALIL 523 (535)
Q Consensus 448 r~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i 523 (535)
|+.++.+....+++++.+... ....+..+...++...+.+.. .++.+.+.+|++|++.|+++.|+.+.++++++++
T Consensus 342 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i 421 (491)
T 4gc0_A 342 KPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF 421 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred cchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 999998888877776665433 222333333333333333322 3677899999999999999999999999999999
Q ss_pred HHHHHhh
Q psy3965 524 IPYLWDM 530 (535)
Q Consensus 524 ~P~i~~l 530 (535)
+|++...
T Consensus 422 ~~~~~p~ 428 (491)
T 4gc0_A 422 VSWTFPM 428 (491)
T ss_dssp HHTHHHH
T ss_pred HHHHHHH
Confidence 8877543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=5.2e-29 Score=255.85 Aligned_cols=329 Identities=12% Similarity=0.009 Sum_probs=237.2
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhc----cchHHHHHHHHHHHhhhhhhhHH
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAA----SPWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~----~~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
.+++.+++.++..++++++|+ ++||+|||++++++.++.+++.++.++ +++++.++++|++.|++.+...+
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGS-----VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH-----HHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccc
Confidence 388999999999999999999 999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---cc-hhHHHHHHHHHHHHH-HHHhhhcccchhHHHhcC
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---HS-WRILQWVITAPTIIF-LILWWCIPESPRWLLTMG 308 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---~~-Wr~~~~~~~~~~l~~-~~~~~~lpesp~~l~~~~ 308 (535)
...+++.|++|+++|+++.++.+.+..+|.++++.++..+ .+ ||+.|++.+++.++. ++.++++||+|++...+.
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP 218 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC
Confidence 9999999999999999999999999999999999998664 36 999999988877664 445677899886432111
Q ss_pred CHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccC
Q psy3965 309 KTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLS 388 (535)
Q Consensus 309 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (535)
+.++ ..+..+.. ..+++++...++...+++++++.++...+..++..+...........+..
T Consensus 219 ~~~~----------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 219 IEEY----------------KNDYPDDY--NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280 (451)
T ss_dssp CTTT----------------CCC---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred hhhh----------------cccccccc--hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00000000 00000001111112466788888776666655544443333222333333
Q ss_pred c-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhc--CChhHHHHHHHHHH-HHHHH
Q psy3965 389 N-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM--GRRRPLCLTTMAAG-VACLV 464 (535)
Q Consensus 389 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~~~-i~~~~ 464 (535)
+ ++.+......+. .+.+++.+++.++.+++.||+ |||+.+..+..+.. +++++
T Consensus 281 ~~~g~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (451)
T 1pw4_A 281 EVKHFALDKSSWAY-----------------------FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV 337 (451)
T ss_dssp TBSCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 2 333322111111 122277888999999999999 99998887776666 55555
Q ss_pred HHhcCC-ChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhH-HHHHHHHHHhhhh
Q psy3965 465 TLAFPQ-GSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGV-ALILIPYLWDMVN 532 (535)
Q Consensus 465 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-g~~i~P~i~~l~~ 532 (535)
+.+.++ ..+......++.+++.+...+....+..|.+|++.|+++.|+.+.+..+ |.+++|.+.+...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 338 YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 4445555555666766777777889999999999999999999999999 9999999987643
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=2e-27 Score=243.18 Aligned_cols=317 Identities=9% Similarity=-0.074 Sum_probs=234.1
Q ss_pred cCceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchh---hccchHHHHHHH
Q psy3965 149 GDTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGV---AASPWFEGYLVL 220 (535)
Q Consensus 149 ~~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~---~~~~s~~~l~~~ 220 (535)
.|.+.+++++ +++.+.+.++..+++++.|+ ++||+|||++++++.++.+++.++. +++++++.++++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~-----l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGI-----LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 3455666665 88899999999999999999 9999999999999999999999999 899999999999
Q ss_pred HHHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc----c---------------------
Q psy3965 221 RAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH----S--------------------- 275 (535)
Q Consensus 221 r~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~----~--------------------- 275 (535)
|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|.++++.++..+. +
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHS 203 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhh
Confidence 999999999999999999999999999999999999999999999999887653 2
Q ss_pred ----hhHHHHHHHHHHHHHHHHhhh--cccchhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCC
Q psy3965 276 ----WRILQWVITAPTIIFLILWWC--IPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGK 349 (535)
Q Consensus 276 ----Wr~~~~~~~~~~l~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (535)
||+.|++.+++.++..+..++ .||+++.. ++++++.+.
T Consensus 204 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------------------------------~~~~~~~~~ 247 (438)
T 3o7q_A 204 LVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN------------------------------------HSDAKQGSF 247 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC------------------------------------CCCSSTTSH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc------------------------------------cccccccch
Confidence 999998877666554444333 45554210 000011112
Q ss_pred cccchhhccCchHHHHHHHHHHHHhhhHHh-hhhhhh-ccCccCCceeeeeeEEccccCccccccccccccccCcCCccC
Q psy3965 350 KVEVLDLWRTPLMRLISCVQYVVWFSVYLV-YYGLVL-NLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVP 427 (535)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (535)
+.++++++++|.++...+..++........ .+...+ ..+.++.+......... +.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----------------------~~ 304 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLT-----------------------GT 304 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHH-----------------------HH
T ss_pred hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHH-----------------------HH
Confidence 345677888888887766655444433222 222222 22222322211111111 12
Q ss_pred ceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhh
Q psy3965 428 GIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507 (535)
Q Consensus 428 ~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 507 (535)
.++.+++.++.+++.||+|||+.+..+.++.+++++++.+.++ .+. ....++.+++.+..++..+.+..|.+|++ ++
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 381 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG-HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK 381 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH-HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC-cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc
Confidence 2677889999999999999999999998888887777666543 223 33335556777777888999999999977 88
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhhhh
Q psy3965 508 LGVGASSVPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 508 ~~~g~~~~~~~ig~~i~P~i~~l~~~ 533 (535)
.+.++.. .+.+|++++|.+.+...+
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~ 406 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSD 406 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 8888877 677999999999876543
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=4.2e-27 Score=235.76 Aligned_cols=312 Identities=10% Similarity=0.010 Sum_probs=219.9
Q ss_pred CceeccCCC-----cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHH
Q psy3965 150 DTIISEPES-----HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAML 224 (535)
Q Consensus 150 ~~i~~~~~l-----~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~ 224 (535)
|.+.+++++ +++.+.+.++..+++++.|+ ++||+|||++++.+.++..++.++.+++++++.+++.|++.
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~-----l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 98 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGP-----ISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQ 98 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHH-----HHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445566665 78889999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHH-Hhhhcccc
Q psy3965 225 GFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLI-LWWCIPES 300 (535)
Q Consensus 225 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~-~~~~lpes 300 (535)
|++.+...+...+++.|+.|+++|+++.++.+.+..+|.++++.++..+. +||+.+++.++..++..+ ..+.+||+
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 99999999999999999999999999999999999999999999988874 799999988887777555 56678887
Q ss_pred hhHHHhcCCHHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhh
Q psy3965 301 PRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380 (535)
Q Consensus 301 p~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (535)
+++. +++++.+.++++++|+|.++...+...+.+.......
T Consensus 179 ~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (375)
T 2gfp_A 179 RPVD---------------------------------------APRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFE 219 (375)
T ss_dssp STTT---------------------------------------CCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC---------------------------------------cccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH
Confidence 6420 0001123456677777777666555544433332222
Q ss_pred hhhhhccCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHH-H
Q psy3965 381 YGLVLNLSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMA-A 458 (535)
Q Consensus 381 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~-~ 458 (535)
.....+..+ .+.+......+. ...+++.+++.++.+++.||.+++ +..+... .
T Consensus 220 ~~~~~~~~~~~g~~~~~~g~~~-----------------------~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~ 274 (375)
T 2gfp_A 220 ACSGVLMGAVLGLSSMTVSILF-----------------------ILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCL 274 (375)
T ss_dssp HHCSCSSHHHHHHHHHHHHHHH-----------------------HTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 222222211 111111100000 111245556666666666666552 2222222 1
Q ss_pred HHHHH--HHHhc-CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 459 GVACL--VTLAF-PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 459 ~i~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
..+.. ..... .++.+......++.+++.+...+....+..|.+| +.|+++.|+.+....+|.+++|.+.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 275 LAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML 349 (375)
T ss_dssp HTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11111 1133344455566677788878888999999999 7899999999999999999998876543
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92 E-value=2e-24 Score=224.34 Aligned_cols=347 Identities=12% Similarity=-0.018 Sum_probs=217.9
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccc-cCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSR-FGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFV 237 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr-~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~ 237 (535)
+++.+.+.++..+++++.|+ ++|| +|||+++..+.++.+++.++++++++++.++++|++.|++.+...+...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~-----l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGF-----VADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 88899999999999999999 9999 89999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcc--hhhhhhhhhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhc-ccch----hHHHhc
Q psy3965 238 LCMEIVGGKW--LTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI-PESP----RWLLTM 307 (535)
Q Consensus 238 ~i~e~~~~~~--r~~~~~~~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~l-pesp----~~l~~~ 307 (535)
++.|++|+++ |+.+.++.+.+..+|.+++|.++..+ .+||+.|++.++..++..+..++. |+.. +....+
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDP 211 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCC
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCc
Confidence 9999999988 77788889999999999999998876 489999999877666544443322 2211 000111
Q ss_pred CCHHHHHHHHHH--------------HHHHcCCCCChhhHHHHHH----h-hhhhhhccCCcccchhhccCchHHHHHHH
Q psy3965 308 GKTEEAMEVLKD--------------AARFNDKTLPANTDKLLKQ----S-VSSMKEDSGKKVEVLDLWRTPLMRLISCV 368 (535)
Q Consensus 308 ~~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (535)
.+.++.++..+. ....++.+........... . .......+++.....+..+........+.
T Consensus 212 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 212 LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 233333333332 1112222221111000000 0 00000000000000111111122222222
Q ss_pred HHHHHhhhHHhhhhhhhccCc-cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCC
Q psy3965 369 QYVVWFSVYLVYYGLVLNLSN-IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGR 447 (535)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~gr 447 (535)
....+............+..+ .+.+... .+ ......++..+++.++.+++.||++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~~~~~l~~r~~~ 348 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFP----VS-------------------WFQSLNPLFIMLYTPFFAWLWTAWKK 348 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSC----SG-------------------GGTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccC----HH-------------------HHhccchHHHHHHHHHHHHHHHHHhc
Confidence 222233222222222222211 1111100 00 11112236677788889999999999
Q ss_pred hhHHH-----HHHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHH
Q psy3965 448 RRPLC-----LTTMAAGVACLVTLAFP--------QGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASS 514 (535)
Q Consensus 448 r~~l~-----~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 514 (535)
|+... .+..+.+++++++.... ...+......++.+++.+...+..+.++.|.+|++.|+++.|+.+
T Consensus 349 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 428 (491)
T 4aps_A 349 NQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF 428 (491)
T ss_dssp C---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 86544 55555555555444421 233445555666677777777888999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhhhh
Q psy3965 515 VPAGVALILIPYLWDMVNS 533 (535)
Q Consensus 515 ~~~~ig~~i~P~i~~l~~~ 533 (535)
....+|.+++|.+..+..+
T Consensus 429 ~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999877654
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.84 E-value=4.3e-21 Score=200.88 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=119.1
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc-CchhhHHHHHHHHHHhhchhhccc-hHHHHHHHHHHHhhhhhhhHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-GRKRALMGSLVCQLVLGAGVAASP-WFEGYLVLRAMLGFVCVSIVFSGF 236 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~-Grr~~l~~~~~~~~i~~~~~~~~~-s~~~l~~~r~l~G~~~~~~~~~~~ 236 (535)
+++.+++.++..+++++.|+ ++||+ |||+++.++.++.+++.++.++++ +++.+++.|++.|++.+...+...
T Consensus 57 g~~~~~~~~~~~~~~~~~G~-----l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGW-----IADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHH-----HHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHH
Confidence 88899999999999999999 99999 999999999999999999999999 999999999999999999999999
Q ss_pred hhhcccccCcchhhhhhh---hhhhhhhHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhh
Q psy3965 237 VLCMEIVGGKWLTIAGIS---YLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 237 ~~i~e~~~~~~r~~~~~~---~~~~~~lG~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~ 295 (535)
+++.|++|+++|++..+. .+.+..+|.+++|.++..+ .+||+.|++.++..++..+..+
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876666 8888999999999988766 3899999988877666544443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.83 E-value=4e-22 Score=202.52 Aligned_cols=318 Identities=12% Similarity=0.077 Sum_probs=188.8
Q ss_pred CcchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhc---hhhccchHH-HHHHHHHHHhhhhhhhHH
Q psy3965 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGA---GVAASPWFE-GYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 158 l~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~---~~~~~~s~~-~l~~~r~l~G~~~~~~~~ 233 (535)
.+++.+.+.++..++++++|+ ++||+|||++++++..+.+++.. ...+++... .+...+++.|++.+...+
T Consensus 45 ~g~~~~~~~~~~~i~~~~~G~-----lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 119 (417)
T 2cfq_A 45 TGIIFAAISLFSLLFQPLFGL-----LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFN 119 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-----HHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999999999 99999999999988877654321 112222221 234566666666555555
Q ss_pred HHHhhhcccccC--cchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHhhhcccchhHHHhcCC
Q psy3965 234 SGFVLCMEIVGG--KWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLILWWCIPESPRWLLTMGK 309 (535)
Q Consensus 234 ~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~~~~~lpesp~~l~~~~~ 309 (535)
.....+.++.++ ++|+...+....+..+|..++|.++..+. +||+.|++.+++.++..+..++.+|+|+. +.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~ 196 (417)
T 2cfq_A 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS---SAT 196 (417)
T ss_dssp TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSC
T ss_pred hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc---ccc
Confidence 444445555443 45566677777788888888888877653 79999988777655555544444433210 000
Q ss_pred HHHHHHHHHHHHHHcCCCCChhhHHHHHHhhhhhhhccCCcccchhhccCchHHHHHHHHHHHHhhhHHhhhhhhhccCc
Q psy3965 310 TEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSN 389 (535)
Q Consensus 310 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (535)
.++ + +++++++....+++++++++.++...+.....+............+...
T Consensus 197 ~~~------------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (417)
T 2cfq_A 197 VAN------------A---------------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS 249 (417)
T ss_dssp SSS------------S---------------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------------c---------------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0000000111234567788877655544322221111110001111111
Q ss_pred -cCCceeeeeeEEccccCccccccccccccccCcCCccCceeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy3965 390 -IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAF 468 (535)
Q Consensus 390 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~ 468 (535)
++.... .....+ . ...+..++++++.++.+++.||+|||+.+..+..+.++..+++.+.
T Consensus 250 ~~~~~~~-~~~~~g---------~----------~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 250 FFATGEQ-GTRVFG---------Y----------VTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp TSSSHHH-HTHHHH---------H----------HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCC-ChhHHH---------H----------HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 110000 000000 0 0001125667888999999999999999888887777766555443
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhhHHHHH-HHHHhHHHHHHHHHHhhh
Q psy3965 469 PQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGAS-SVPAGVALILIPYLWDMV 531 (535)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~ig~~i~P~i~~l~ 531 (535)
+ +.+...+..++.+++.+...+..+.++.|.+|++.|+++.|+. +...++|++++|.+.+..
T Consensus 310 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 310 T-SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp C-SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 3 3334444444444555545556678999999999999999995 778889999999988754
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.89 E-value=9.9e-10 Score=110.96 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=112.4
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..++..++..++.++.|+ ++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~-----l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPL-----IINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777888999999 9999999999999988888887788888888888888888898887777888899
Q ss_pred hcccccCcchhhhhhh-hhhhhhhHHHHHHHHHhhhc---chhHHHHHHHHHHHHHHHH-hhhcccch
Q psy3965 239 CMEIVGGKWLTIAGIS-YLFPVPLGYIAISGIAYYIH---SWRILQWVITAPTIIFLIL-WWCIPESP 301 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~-~~~~~~lG~~i~~~l~~~~~---~Wr~~~~~~~~~~l~~~~~-~~~lpesp 301 (535)
+.|.+|++.|+...++ .+....+|..++|.+++.+. +++..|.+.++..++..+. ++..||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999998888 48888899999998887653 6777888877776665544 44566654
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.80 E-value=1.2e-08 Score=103.74 Aligned_cols=134 Identities=16% Similarity=0.057 Sum_probs=113.8
Q ss_pred cchhHHHhhhhhhcceeeccCCcccccccc--CchhhHHHHHHHHH-Hhhchhhcc--chHHHHHHHHHHHhhhhhhhHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRF--GRKRALMGSLVCQL-VLGAGVAAS--PWFEGYLVLRAMLGFVCVSIVF 233 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~--Grr~~l~~~~~~~~-i~~~~~~~~--~s~~~l~~~r~l~G~~~~~~~~ 233 (535)
++..+.+.++.+++.++.|+ ++||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGW-----MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHH
Confidence 67788889999999999999 99999 99999988877766 666666666 3788888889999999999999
Q ss_pred HHHhhhcccccCcchhhhhhhhhhhhhh-HHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHhhhc
Q psy3965 234 SGFVLCMEIVGGKWLTIAGISYLFPVPL-GYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI 297 (535)
Q Consensus 234 ~~~~~i~e~~~~~~r~~~~~~~~~~~~l-G~~i~~~l~~~~---~~Wr~~~~~~~~~~l~~~~~~~~l 297 (535)
....++.|..|+++|+++.++.+....+ |..+++.+.+.+ .+|+..|++.++..++..+..+++
T Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999888766 378999988887777655554443
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.68 E-value=5e-08 Score=100.50 Aligned_cols=136 Identities=14% Similarity=0.051 Sum_probs=94.6
Q ss_pred hhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhcc-----chHHHHHHHHHHHhhhhhhhHHHH
Q psy3965 161 YEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAAS-----PWFEGYLVLRAMLGFVCVSIVFSG 235 (535)
Q Consensus 161 ~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~-----~s~~~l~~~r~l~G~~~~~~~~~~ 235 (535)
......+...++.++.+. +.||+|||+.++.+.....++.+..+.. ++...+...-+..+....+..+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~-----l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIM-----TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVC 391 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 345566777888899999 9999999999999888877776655432 222222222222222223445677
Q ss_pred HhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhh---------cchhHHHHHHHHHHHHHH-HHhhhcccch
Q psy3965 236 FVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYI---------HSWRILQWVITAPTIIFL-ILWWCIPESP 301 (535)
Q Consensus 236 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~---------~~Wr~~~~~~~~~~l~~~-~~~~~lpesp 301 (535)
+.+.+|.+|.+.|+...++......+|.++++.+...+ .++...|++.++.+++.. +.++++||+.
T Consensus 392 ~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 88999999999999999998888888887776654433 145556777777766644 4567899983
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.66 E-value=2.3e-08 Score=103.12 Aligned_cols=131 Identities=7% Similarity=-0.062 Sum_probs=107.1
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHH-----HHHHHHHHhhchhhccc---------hHHHHHHHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALM-----GSLVCQLVLGAGVAASP---------WFEGYLVLRAML 224 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~-----~~~~~~~i~~~~~~~~~---------s~~~l~~~r~l~ 224 (535)
++..+...++..++.++.|+ +.||+|||+... .+.++.+++.++..+.. +.+.+.+.-++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~-----l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAW-----LWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHH-----HHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHH-----HHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 77788888999999999999 999999987665 77777777777776643 777888889999
Q ss_pred hhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHh
Q psy3965 225 GFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH--SWRILQWVITAPTIIFLILW 294 (535)
Q Consensus 225 G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~--~Wr~~~~~~~~~~l~~~~~~ 294 (535)
|++.+...+....++.|..|+++|+.+.++.+....+|..+++.+...+. ++.+.+.+.++..++..+..
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVL 468 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999999999999999999999999999999999987774 56667777666665544443
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.57 E-value=1e-07 Score=96.54 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=104.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccccccCchhhHHHHHHHHHHhhchhhccchHHHHHHHHHHHhhhhhhhHHHHHhh
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVL 238 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~Dr~Grr~~l~~~~~~~~i~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~~ 238 (535)
++..+.+.++..++.++.|+ ++||+|||+++..+.++..++.++..+.++.+.+... ++.|++.+...+...++
T Consensus 298 ~~~~~~~~~~~~~~~~~~g~-----l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 298 ANYLTGTMVCFFIGRFTGTW-----LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 67778889999999999999 9999999999999999999999988888888765554 88999999999999999
Q ss_pred hcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhc---c-hhHHHHHHHHHHHHHHHHhh
Q psy3965 239 CMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIH---S-WRILQWVITAPTIIFLILWW 295 (535)
Q Consensus 239 i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~---~-Wr~~~~~~~~~~l~~~~~~~ 295 (535)
..|..|++ |+...++.. ...+|..++|.+.+.+. + ++..|++.++..++..+..+
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999866 887777766 44588888888877653 5 88888876555444443333
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.28 E-value=2.1e-06 Score=89.14 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=85.7
Q ss_pred cchhHHHhhhhhhcceeeccCCccccc----cccCc----hhhHHHHHHHHHHhhchhhcc---------chHHHHHHHH
Q psy3965 159 HSYEMQSDFDVQLSKLYTGQSNLDDTG----SRFGR----KRALMGSLVCQLVLGAGVAAS---------PWFEGYLVLR 221 (535)
Q Consensus 159 ~~~~s~~~~g~~ig~~~~G~~~~~~l~----Dr~Gr----r~~l~~~~~~~~i~~~~~~~~---------~s~~~l~~~r 221 (535)
++..+...++..++.++.+. +. ||.|| ++.+..+.++.+++.++.++. .+.+.+++.-
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (524)
T 2xut_A 338 AMMQALNPLLVMLLIPFNNF-----VLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPY 412 (524)
T ss_dssp HHHHTTSGGGHHHHGGGTTT-----C------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHh-----hhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHH
Confidence 34444555666666666666 53 55543 356677888888877777664 3677888889
Q ss_pred HHHhhhhhhhHHHHHhhhcccccCcchhhhhhhhhhhhhhHHHHHHHHHhhhcc
Q psy3965 222 AMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS 275 (535)
Q Consensus 222 ~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~i~~~l~~~~~~ 275 (535)
++.|++.+...+....++.|..|+++|++++++.+....+|..+++.+...+.+
T Consensus 413 ~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 413 ALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999887753
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.28 E-value=4.3e-07 Score=89.91 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=87.5
Q ss_pred eeehhhHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhhhh
Q psy3965 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNL 508 (535)
Q Consensus 429 ~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 508 (535)
++..++.++.|++.||+|||+.+..+..+.+++.++..+.+ +.+...+..++.+++.+...+....+..|.+|++.|+.
T Consensus 46 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (375)
T 2gfp_A 46 LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH 124 (375)
T ss_dssp HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence 66778889999999999999999999998888888777654 34455666677778888888888999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhh
Q psy3965 509 GVGASSVPAGVALILIPYLWDMV 531 (535)
Q Consensus 509 ~~g~~~~~~~ig~~i~P~i~~l~ 531 (535)
+.++.+....+|.+++|.+....
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 125 ANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999988754
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=25.31 E-value=42 Score=17.22 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=10.5
Q ss_pred HHHHHhhcCChhH
Q psy3965 438 SILILLKMGRRRP 450 (535)
Q Consensus 438 ~~~l~dr~grr~~ 450 (535)
.|.++.++||+.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 4688999999864
Done!