RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3965
(535 letters)
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 260 bits (666), Expect = 1e-80
Identities = 157/503 (31%), Positives = 246/503 (48%), Gaps = 53/503 (10%)
Query: 40 GEFGRWQFQLTVLLSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVF 99
GEFG +Q + +LL+L +H + F A C + ++S +N +
Sbjct: 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCR-LPDAANLSSRCELN---LT 56
Query: 100 TRDDEKFGYNPCAIKDLDYSQSYHDLLLE-----SENVTTTRPC-QKWLYDTNNFGDTII 153
C +D + L E + T PC W Y + F TI+
Sbjct: 57 LPRLPDGRPESCLRFMVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIV 116
Query: 154 SE---PESHSYEM---QSDFDVQLSKLYTGQSNLDDTGSRFGRKRALMGSLVCQLVLGAG 207
+E ++++ QS F V + L D RFGRK+ L+ S + V G
Sbjct: 117 TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD---RFGRKKVLLLSTLVTAVSGVL 173
Query: 208 VAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAIS 267
A SP + +LV R ++G I VL E + K I G LG + +
Sbjct: 174 TAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLP 233
Query: 268 GIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKT 327
+AY+I WR LQ ++ PT +F +L W +PESPRWL++ G+ EEA+++L+ A+ N K
Sbjct: 234 LVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK 293
Query: 328 LPANTDKLLKQSVSSMKEDSGKKVE--VLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVL 385
LPA S+S K+ S K + LDL+RTP +R + ++WF+ YYGLVL
Sbjct: 294 LPAE-----VLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVL 348
Query: 386 NLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKM 445
+L N+GG++Y++ ISG +VE+PA +++L++ ++
Sbjct: 349 DLGNLGGNIYLDLFISG--------------------------LVELPAKLITLLLIDRL 382
Query: 446 GRRRPLCLTTMAAGVACLVTLAFPQG-SWMTISLAMIGKFAISSSNVVMPVYTAELFPTK 504
GRR + + + AGVA L+ L P ++ +LA++GKF I+S+ ++ +YTAEL+PT
Sbjct: 383 GRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV 442
Query: 505 MRNLGVGASSVPAGVALILIPYL 527
+RNLGVG S A V I+ P+L
Sbjct: 443 VRNLGVGVCSTMARVGSIISPFL 465
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 87.0 bits (216), Expect = 3e-18
Identities = 89/370 (24%), Positives = 140/370 (37%), Gaps = 63/370 (17%)
Query: 185 GSRFGRKRALMGSLVCQLVLGA---GVAASPWFEGYLVLRAMLGFVC-VSIVFSGFVLCM 240
G RFGRK++L+ V V+GA G A F +V R ++G V +
Sbjct: 70 GDRFGRKKSLLIGNVL-FVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVP-MYIS 127
Query: 241 EI----------VGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS--WRILQWVITAPTI 288
EI + GI + I G+ Y +S WRI + P I
Sbjct: 128 EIAPKKLRGALGSLYQLGITFGI------LVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181
Query: 289 IFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSG 348
+ LI +PESPRWL+ GK EEA VL + + ++ ++ S +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKL-----RGVSDVDQEIQEEKDSLERSVEA 236
Query: 349 KKVEVLDLWRTPLMR---LISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESF 405
+K L+L+R +R L+ + + L+ I Y + I F
Sbjct: 237 EKASWLELFRGKTVRQRLLMGVM------------LQIFQQLTGINAIFYYSPTI----F 280
Query: 406 NSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL--CLTTMAAGVACL 463
+ LS S + + + G+V ++I ++ + GRR L MA L
Sbjct: 281 ETLGLSDSLL-------VTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVL 333
Query: 464 -VTLAFPQGS-WMTI-SLAMIGKFAIS---SSNVVMPVYTAELFPTKMRNLGVGASSVPA 517
V L S I ++ I F V V +ELFP +R + ++
Sbjct: 334 GVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAAN 393
Query: 518 GVALILIPYL 527
+A LI +L
Sbjct: 394 WLANFLIGFL 403
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 68.1 bits (167), Expect = 4e-12
Identities = 67/358 (18%), Positives = 133/358 (37%), Gaps = 39/358 (10%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVL---RAMLGFV--CVSIVFSGFV--LC 239
RFGRK++L+ + ++ + + + +L R +LG S + ++ +
Sbjct: 97 RFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA 156
Query: 240 MEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS--WRILQWVITAPTIIFLILWWCI 297
+ + G ++ ++ F + + Y SG ++ WRI + P + + + +
Sbjct: 157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFL 216
Query: 298 PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLW 357
PESPRWL+ G+ EEA + L + + LL + + S +K V W
Sbjct: 217 PESPRWLVGKGRVEEARKSLARLRGTSGEDKE-----LLDELELIDIKRSIEKRSVQPSW 271
Query: 358 RTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILC 417
+ L S + + V + I +Y + I F + +ST
Sbjct: 272 GS----LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTI----FENAGVSTD---- 319
Query: 418 FHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPL------CLTTMAAGVACLVTLAFPQG 471
H S + G V ++I ++ + GRR L + +
Sbjct: 320 -HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS 378
Query: 472 SWMT-ISLAM----IGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILI 524
+++ I FA+ V V +E+FP +R G+ + +A ++
Sbjct: 379 KSSGNVAIVFILLFIAFFAMGWGPVPW-VIVSEIFPLSLRPKGISIAVAANWLANFIV 435
Score = 30.4 bits (69), Expect = 2.4
Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 41/154 (26%)
Query: 186 SRFGRKRALM----GSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVF-------S 234
RFGR+ L+ G +C VLG A+ + F+ + I F
Sbjct: 344 DRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPV 403
Query: 235 GFVLCMEI-------------VGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQW 281
+V+ EI V WL + +LFP L I G +
Sbjct: 404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGVF---------I 453
Query: 282 VITAPTIIFLIL-WWCIPESPRWLLTMGKTEEAM 314
++ LI ++ +PE T G+T E +
Sbjct: 454 FFGGLNVLGLIFVYFFLPE------TKGRTLEEI 481
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 63.1 bits (153), Expect = 2e-10
Identities = 67/242 (27%), Positives = 99/242 (40%), Gaps = 50/242 (20%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGY---LVLRAMLGFV---CVSIVFSGFV--- 237
+ GRK+ L L+C V G S + +GY L R + GF + IVFS F
Sbjct: 228 KLGRKQCL---LICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL 284
Query: 238 -----------LCM-EIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITA 285
LCM ++GG + A +++ G+ G AY HSWR+ V
Sbjct: 285 AQEKRGEHLSWLCMFWMIGGIY--AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAF 342
Query: 286 PTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFN-------DKTLPANTDKLLKQ 338
P + + +PESPR+ L GK +EA +LK N +K N K + Q
Sbjct: 343 PCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQ 402
Query: 339 --SVSSMKEDSGK---------KVEVLDLWRT------PLMRLISCVQYVVWFSVYLVYY 381
+ ++ D+G E +W P +R I+ VWF++ YY
Sbjct: 403 EDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYY 462
Query: 382 GL 383
GL
Sbjct: 463 GL 464
Score = 37.6 bits (87), Expect = 0.015
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 432 IPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTIS-LAMIGKFAISSSN 490
+P +S L++ K+GR R L + + + ++C L+F I+ L + G +I++ N
Sbjct: 609 LPGNIVSALLMDKIGRLRMLAGSMVLSCISCFF-LSFGNSESAMIALLCLFGGLSIAAWN 667
Query: 491 VVMPVYTAELFPTKMRNLGVG 511
+ V T EL+P+ R G
Sbjct: 668 -ALDVLTVELYPSDKRATAFG 687
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 60.0 bits (146), Expect = 8e-10
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246
RFGR+R L+ L+ + +A + LV R +LG ++ + L E K
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 247 WLTIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCIP 298
A + LG + + + WR L ++ ++ +L +
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
Score = 53.9 bits (130), Expect = 9e-08
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 18/157 (11%)
Query: 371 VVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIV 430
+ +F + YYGL+ L +V + S + G+
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLS------------------LFGLG 223
Query: 431 EIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSN 490
I + L+ ++GRRR L L + L+ LA + + ++ F + +
Sbjct: 224 GILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283
Query: 491 VVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
+ +EL P + R G + + L P L
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL 320
Score = 41.9 bits (99), Expect = 5e-04
Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 7/140 (5%)
Query: 394 VYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILL------KMGR 447
+++ +SG + + + LS S IV ++ ++ LL + GR
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGR 63
Query: 448 RRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRN 507
RR L L + + L+ + + ++G + AE FP K R
Sbjct: 64 RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLG-LGGGALYPAAAALIAEWFPPKERG 122
Query: 508 LGVGASSVPAGVALILIPYL 527
+G S G+ +L P L
Sbjct: 123 RALGLFSAGFGLGALLGPLL 142
Score = 32.3 bits (74), Expect = 0.54
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 4/117 (3%)
Query: 186 SRFGRKRALM-GSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVG 244
R GR+R L+ L+ + +A +P LV +LGF + L E+
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAP 295
Query: 245 GKWLTIAGISYLFPVPLGYI---AISGIAYYIHSWRILQWVITAPTIIFLILWWCIP 298
+ A + LG ++G+ + + ++ A ++ +L +P
Sbjct: 296 PEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 56.6 bits (137), Expect = 1e-08
Identities = 63/333 (18%), Positives = 112/333 (33%), Gaps = 41/333 (12%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGY---LVLRAMLGFVCVSIVFSGFVLCMEIV 243
R GR+R L L L+ L+LR + G ++ + L E
Sbjct: 78 RIGRRRVL---LWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA 134
Query: 244 GGKWLTIAGISYLFPVPLGYI---AISGIAYYIHSWRILQWVIT-APTIIFLILWWCIPE 299
++ A P+G ++G + WR L +V AP ++ L+L +PE
Sbjct: 135 PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE 194
Query: 300 SPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRT 359
S +L++ V A + + A + K G K V
Sbjct: 195 SIDFLVSKRPETVRRIVNAIAPQMQAEAQSA---------LPEQKATQGTKRSVFKALFQ 245
Query: 360 PLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFH 419
I+ + ++++F + + Y L ++ ++ F+ + +T L
Sbjct: 246 GKTARITVLLWLLYFMLLVGVYFLT---------NWLPKLMVELGFSLSLAATGGAL--- 293
Query: 420 DLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGV-ACLVTLAFPQGSWMTISL 478
+ V G + I L R L + V A LV + + +
Sbjct: 294 -FNFGGVIGSI-IFGWLADRL------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG 345
Query: 479 AMIGKFAISSSNVVMPVYTAELFPTKMRNLGVG 511
A+ G F + A +PT +R GVG
Sbjct: 346 AIAGFFVN-GGQSGLYALMALFYPTAIRATGVG 377
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 53.5 bits (129), Expect = 1e-07
Identities = 68/254 (26%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 263 YIAISGIAYYIHS--WRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDA 320
+IA SG A ++++ WR + P ++FL+L + +PE+PR+L++ GK E+A +L+
Sbjct: 178 FIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR-- 235
Query: 321 ARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380
+ TL + +K S+ ++ GK L+ F V ++
Sbjct: 236 -KIMGNTLATQALQEIKHSLDHGRKTGGK--------------LLM-------FGVGVIV 273
Query: 381 YGLVLNLSNIGGDVYVNTVI--SGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMS 438
G++ LS V +N V+ + E F + ST L L T V G++ + ++
Sbjct: 274 IGVM--LSVFQQFVGINVVLYYAPEIFKTLGASTDIAL----LQTIIV-GVINLTFTVLA 326
Query: 439 ILILLKMGRRRPLCLT---TMAAGVACLVTLAFPQGSWMTISLAMI---GKFAISSSNVV 492
I+ + K G R+PL + MA G+ L T + Q + L+M+ FA+S V
Sbjct: 327 IMTVDKFG-RKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVC 385
Query: 493 MPVYTAELFPTKMR 506
V +E+FP +R
Sbjct: 386 W-VLLSEIFPNAIR 398
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 52.0 bits (125), Expect = 3e-07
Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 64/346 (18%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVG-- 244
RFGR+R L+ L+ + + + LVLR + G ++ + L +
Sbjct: 58 RFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPE 117
Query: 245 --GKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPR 302
G+ L + + LG + + G+ + WR ++ ++ +L
Sbjct: 118 ERGRALGLLSAGFGLGAALGPL-LGGLLASLFGWRAAFLILAILALLAAVLAAL------ 170
Query: 303 WLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLM 362
L K+ + + + L R P++
Sbjct: 171 LLPR-------------------------PPPESKRPKPAEEAPAPLVPAWKLLLRDPVL 205
Query: 363 RLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLS 422
L+ + ++ L+ L + ++ +++G
Sbjct: 206 WLL-----LALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLG---------------- 244
Query: 423 TSCVPGIVEIPAIAMSILILLKMGRRRPL---CLTTMAAGVACLVTLAFPQGSWMTISLA 479
+ G++ + + ++GRRR L L + A + + W+ ++L
Sbjct: 245 ---LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALL 301
Query: 480 MIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIP 525
++G F + ++L P + R G + + L P
Sbjct: 302 LLG-FGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 42.0 bits (99), Expect = 4e-04
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 432 IPAIAMSILILL------KMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGKFA 485
++ ++ L + GRRR L + + + L+ L + + + G
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQG-LG 98
Query: 486 ISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
+ A+ FP + R +G S G+ L P L
Sbjct: 99 GGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL 140
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 42.9 bits (101), Expect = 3e-04
Identities = 58/341 (17%), Positives = 114/341 (33%), Gaps = 54/341 (15%)
Query: 185 GSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVG 244
G R+GR+ ++ S+V +P + + R ++G S +E
Sbjct: 71 GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWP 130
Query: 245 GKWLTIAGISYLFPVPLGYIAISGIAYYI------HSWRILQWVITAPTIIFLILWWCIP 298
A + +G + ++ Y + WR L ++ P I L L IP
Sbjct: 131 KHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIP 189
Query: 299 ESPRWLLTMGKTEEAMEVLKDAAR--FNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDL 356
E+ W + +++ + + AN ++ ++M + +GK+
Sbjct: 190 EAEDW----KEKHAGKALVRTMVDILYGGEHRIAN---IVMTLAAAMVQSAGKR------ 236
Query: 357 WRTPLMRLISCVQYVVWFSVYLVYYGLVLN-LSNIGGDVYVNTVISGESFNSTTLSTSSI 415
W T VYLV L N S+ D+ ++ L S
Sbjct: 237 WPT---------------FVYLVVLVLFANLYSHPIQDLL-------PTYLKADLGLSP- 273
Query: 416 LCFHDLSTSCVPGIVEIPAIAMSIL---ILLKMGRRRPLCLTTMAAGVACLVTLAFPQGS 472
+ + + I AI + + +GRR+ + +A + + A
Sbjct: 274 -----HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANV 328
Query: 473 WMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGAS 513
+ + + ++P + E FPT R G+G +
Sbjct: 329 AVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFT 369
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 41.6 bits (98), Expect = 9e-04
Identities = 63/266 (23%), Positives = 95/266 (35%), Gaps = 31/266 (11%)
Query: 276 WRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKL 335
WRIL P ++ L IPE+PR+ + K E + D + + A D++
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE--QAASDMSAVLQVKIEAEPDEV 260
Query: 336 LKQS--VSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLN----LSN 389
K S V K WR L + WF + + +YG+ LN LS
Sbjct: 261 EKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGS---WFLLDIAFYGVNLNQKVILSA 317
Query: 390 IGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILILLKMGRRR 449
IG T + E T + I VPG +++ ++ +G R+
Sbjct: 318 IGYSPPAATNNAYEELYKTAVGNLIIAL-----AGTVPG------YWVTVFLVDIIG-RK 365
Query: 450 PLCLTTMAAGVACLVTLAFPQGSWMTISLAMIGK----FAISSSNVVMPVYTAELFPTKM 505
P+ L L F T I FA N + E+FPT+
Sbjct: 366 PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY 425
Query: 506 RNL--GVGASSVPAG--VALILIPYL 527
R+ G+ A+S AG + YL
Sbjct: 426 RSTAHGISAASGKAGAIIGQFGFLYL 451
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 40.3 bits (95), Expect = 0.002
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 186 SRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFS-GFVLCMEIVG 244
R R+R L+G L +V A +P F L+ RA+ G + +S L +V
Sbjct: 73 GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGL-AHGVFWSIAAALAARLVP 131
Query: 245 ----GKWLTIAG----ISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTII-FLILWW 295
G+ L + ++ + VPLG + + WR I ++ L+LW
Sbjct: 132 PGKRGRALALVFTGLTLATVLGVPLG-TFLGQLF----GWRATFLAIAVLALLALLLLWK 186
Query: 296 CIPES 300
+P S
Sbjct: 187 LLPPS 191
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 39.9 bits (94), Expect = 0.002
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 444 KMGRRRPL-CLTTMAAGVACLVTLAFPQGSWMTISLA--MIGKFAISSSNVVMPVYTAEL 500
++GRR L T +AA +A + +A T+ + M + EL
Sbjct: 281 RIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPEL 340
Query: 501 FPTKMRNLGVG---------ASSVPAGVALILIPY 526
FPT++R G +A L+
Sbjct: 341 FPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM 375
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 38.1 bits (89), Expect = 0.009
Identities = 65/361 (18%), Positives = 116/361 (32%), Gaps = 73/361 (20%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246
RFG ++ L +V V A + + +LR +LG + F + ++
Sbjct: 55 RFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLG-----AAEAPFFPGIILIVAS 109
Query: 247 WL------TIAGISYLFPVPLGYIAISGIAYYI---HSWRILQWVITAPTIIFLILWWCI 297
W T I LG I + +I SW+ + II+ +LW
Sbjct: 110 WFPASERATAVSIFNSA-QGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKF 168
Query: 298 ----PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKL--LKQSVSSMKEDSGKKV 351
P+ +WL TEE ++ + +T K +K+ + K
Sbjct: 169 IPDPPQKAKWL-----TEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELL--------KDR 215
Query: 352 EVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLS 411
V L + I ++ WF YLV + + L
Sbjct: 216 RVWGLALGQFLVNIGLGFFLTWFPTYLV-----------------------QERGLSILE 252
Query: 412 TSSILCFHDLSTSCVPGIVEIPA-IAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQ 470
+ + +PGIV I L L + R + L A +A LV
Sbjct: 253 AGFM--------ASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMF 304
Query: 471 G------SWMTISLAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILI 524
+ ++L +G F + + + + ++ P + L G + + I+
Sbjct: 305 ATNYVNIPYAALALVALGFFGLGAGAIGWAL-ISDNAPGNIAGLTGGLINSLGNLGGIVG 363
Query: 525 P 525
P
Sbjct: 364 P 364
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 37.2 bits (87), Expect = 0.016
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 432 IPAIAMSILILLKMGRRRPLCLTT-MAAG-VACLVTLAF-PQGSWMTISLAMIGKFAISS 488
I S+LI M R RP + + AG +A L LA P + M ++ G F +
Sbjct: 266 IGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGG 325
Query: 489 SNVVMPVYTAELFPTKMRNLGVGAS 513
+V+ + +PT++R GVGA+
Sbjct: 326 QSVLYAL-APLFYPTQVRGTGVGAA 349
Score = 28.8 bits (65), Expect = 7.2
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 187 RFGRKRALMGS--LVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVG 244
R GRKR L+ S L L A F LV R + G + + L E VG
Sbjct: 76 RIGRKRILIVSVALFGLFSLATAQAWD--FPSLLVARLLTGVGLGGALPNLIALTSEAVG 133
Query: 245 GKWLTIAGISYLFP-VPLG-YIA--ISGIAYYIHSWRILQWV-ITAPTIIFLILWWCIPE 299
+ A +S ++ VP G +A I +A +WR + +V P ++ +L +PE
Sbjct: 134 PRLRGTA-VSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPE 192
Query: 300 SPRWL 304
S +
Sbjct: 193 SRAFA 197
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 35.9 bits (83), Expect = 0.042
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 444 KMGRRRP-LCLTTMAA--GVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAEL 500
K+GRR LC ++AA V L L + L M +S + + AE+
Sbjct: 305 KIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEM 364
Query: 501 FPTKMRNLGVGAS 513
FP ++R LGVG S
Sbjct: 365 FPAQVRALGVGLS 377
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 33.8 bits (78), Expect = 0.071
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Query: 186 SRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGG 245
RFGRK L+ L ++ A A S ++ R + GF + +G L +I
Sbjct: 23 DRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82
Query: 246 KWLTIA-GISYLFPV--PLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPE 299
+ +A G+ PL + G+ WR + + IL +
Sbjct: 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 34.2 bits (79), Expect = 0.16
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 426 VPGIVEIPAIAMSILI-----LLKMGRRRPLCLTTMAAGVACLVTLAF-PQGSWM--TIS 477
+ E+ + ++L L GRR P+ L M A LV P GS++ I
Sbjct: 293 AISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAIL 352
Query: 478 LAMIGKFAISSSNVVMPVYTAELFPTK-------MRNLG---VGASSVPAGVALILIPYL 527
L +IG F I +++ + AE P K L +GA+ + I +
Sbjct: 353 LFIIG-FLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411
Query: 528 WDMVNSF 534
WD
Sbjct: 412 WDGGFIV 418
>gnl|CDD|240530 cd13125, MATE_like_10, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. This
family might function as a translocase for
lipopolysaccharides, such as O-antigen. The integral
membrane proteins from the MATE family are involved in
exporting metabolites across the cell membrane and are
responsible for multidrug resistance (MDR) in many
bacteria and animals. A number of family members are
involved in the synthesis of peptidoglycan components in
bacteria.
Length = 409
Score = 32.1 bits (74), Expect = 0.82
Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 193 ALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGF-VLCMEIVGG-----K 246
+++G L+ L+L + +S F + + +++ L + I+ G +
Sbjct: 87 SILGGLL--LLLFSKPLSSLLFGDI-DYSWVFILLGLALPLFALNNLLLAILNGLKEIKR 143
Query: 247 WLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPRWLLT 306
+ I IS L +G + + Y+ L ++ ++IFL+ + P + L
Sbjct: 144 YALINIISSL----IGLLVSVLLVYFYGLKGALLALVLNQSLIFLVTLIYSRKQPWFKLK 199
Query: 307 MGKTEEAMEVLKDAARF 323
+++K +F
Sbjct: 200 YLWGRLDKDIIKKLLKF 216
>gnl|CDD|233529 TIGR01685, MDP-1, magnesium-dependent phosphatase-1. This model
represents two closely related clades of sequences from
eukaryotes and archaea. The mouse enzyme has been
characterized as a phosphatase and has been positively
identified as a member of the haloacid dehalogenase
(HAD) superfamily by site-directed mutagenesis of the
active site residues.
Length = 174
Score = 30.6 bits (69), Expect = 1.2
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 272 YIHSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLP-- 329
+LQ + A T + W +PE +L + A + + + F+D+
Sbjct: 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYK 106
Query: 330 ANTDKLLKQSVSSMKEDSGKKVE 352
N K L+ + + + ++
Sbjct: 107 PNKAKQLEMILQKVNKVDPSVLK 129
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 30.8 bits (68), Expect = 1.6
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 4/123 (3%)
Query: 187 RFGRKRALMGSLVCQLV--LGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIV- 243
R+GR++ L+ L+ L+ L +A + L+LR + G ++ L E
Sbjct: 65 RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124
Query: 244 -GGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPR 302
+ G+ L LG +A + + W L L I
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184
Query: 303 WLL 305
LL
Sbjct: 185 DLL 187
>gnl|CDD|183369 PRK11902, ampG, muropeptide transporter; Reviewed.
Length = 402
Score = 31.0 bits (70), Expect = 1.6
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 445 MGRRRPLCLTT---MAAGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELF 501
+GRRR L T +AA +A + W LA++ F +S ++V Y+ ++
Sbjct: 64 LGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVL 123
Query: 502 PTKMRNLGVG--------ASSVPAGVALIL 523
+ R G A V G+AL L
Sbjct: 124 HPEERGAGAAVKVLGYRLAMLVSGGLALWL 153
>gnl|CDD|182898 PRK11010, ampG, muropeptide transporter; Validated.
Length = 491
Score = 31.2 bits (71), Expect = 1.7
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 445 MGRRRPLCLTTMAAGVACLVTLAFPQGS---WMTISLAMIGKFAISSSNVVMPVYTAELF 501
+GRRR L T + + + F + +LA++ F +S ++V + ++
Sbjct: 77 LGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL 136
Query: 502 PTKMRNLGVGAS 513
P + R G GA+
Sbjct: 137 PAEER--GAGAA 146
>gnl|CDD|218928 pfam06181, DUF989, Protein of unknown function (DUF989). This
family consists of several hypothetical bacterial
proteins of unknown function. The haem-binding domain
towards the C-terminus has been merged into
Cytochrome_C, pfam00034.
Length = 299
Score = 29.9 bits (68), Expect = 3.3
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 186 SRFGRKRALMGSLVCQLVLGAGVAASPWFEG---YLVLRAMLGFVCVSIVF 233
S G++ L+G+++ L++ A + F G +L + AM+ + + VF
Sbjct: 141 SPLGKRPTLLGAVLFVLLVAAAYGLTQVFSGRAAFLHVGAMIATIMSANVF 191
>gnl|CDD|236614 PRK09705, cynX, putative cyanate transporter; Provisional.
Length = 393
Score = 29.8 bits (67), Expect = 3.4
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 421 LSTSCVPGIVEIPAIAMSILILLK------MGRRRPLCLTTMAAGVACLVTLAFPQGSWM 474
+S S + +P + M L L + RR + ++ + V L+ +PQ + +
Sbjct: 41 MSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALL 100
Query: 475 TISLAMIGKFAISSSNVVMPVYTAELFPTKM 505
+S A++G I VMP F +
Sbjct: 101 -LSSALLGGVGIGIIQAVMPSVIKRRFQQRT 130
>gnl|CDD|216755 pfam01874, CitG, ATP:dephospho-CoA triphosphoribosyl transferase.
The citG gene is found in a gene cluster with citrate
lyase subunits. The function of the CitG protein was
elucidated as ATP:dephospho-CoA triphosphoribosyl
transferase.
Length = 268
Score = 29.5 bits (67), Expect = 4.3
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 179 SNLDDTG--SRFGRKRALMGSLVCQLVLGAGVAASPWFE 215
+ L DT R G + + VL AGVA E
Sbjct: 199 ATLPDTNILRRGGPEGLEEVQERAREVLAAGVATEAGRE 237
>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93. This
family of proteins is a component of a multi-subunit
protein complex which is involved in the coordination of
muscle contraction. UNC-93 is most likely an ion channel
regulatory protein.
Length = 157
Score = 28.1 bits (63), Expect = 6.8
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 216 GYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKW-LTIAGISYLFPVPLGYIAISGIAYYIH 274
GY L + F VS +F+ V+ +I+ KW + I + Y LG++ ++ Y
Sbjct: 39 GYYSLAIIYFFFTVSCLFAPSVV--DILTPKWAMVIGALCYAS-FQLGFLFLNSYYLYFS 95
Query: 275 S 275
S
Sbjct: 96 S 96
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 28.8 bits (65), Expect = 7.2
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 223 MLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWV 282
++ ++I + +VG + A ++++ P PL ++ +
Sbjct: 328 VVITYLIAISVPFLGDFLSLVGA--TSGAPLTFILP-PLFHLKLKKTKKKSLEKLWK-PD 383
Query: 283 ITAPTIIFL 291
I I +
Sbjct: 384 ILDVICIVI 392
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 28.8 bits (65), Expect = 8.2
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 205 GAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPV 259
G G P L+L + + + + + V +L +AG+ L V
Sbjct: 150 GLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAV 204
>gnl|CDD|224720 COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related
glycosyltransferases of PMT family [Cell envelope
biogenesis, outer membrane].
Length = 535
Score = 28.6 bits (64), Expect = 8.9
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 15/146 (10%)
Query: 188 FGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKW 247
FGR AL+ +L+ L +L A L F + ++ KW
Sbjct: 109 FGRLAALLAALILLLTPLFF-----LIGRLALLDAALAFFLTLALALLYLALRARGKLKW 163
Query: 248 LTIAGIS----YLFPVPLGYIAISGIAYYIHSWRILQW-----VITAPTIIFLI-LWWCI 297
L + G++ +L P + + + + R+ + + + L L W +
Sbjct: 164 LLLLGLALGLGFLTKGPGALLLPLILLLLLLAPRLRRLLRDLRLWLGLLLGLLPVLPWLL 223
Query: 298 PESPRWLLTMGKTEEAMEVLKDAARF 323
++ G +D R
Sbjct: 224 AIQAQFAPYFGHLFLTFGWEEDFQRV 249
>gnl|CDD|224877 COG1966, CstA, Carbon starvation protein, predicted membrane
protein [Signal transduction mechanisms].
Length = 575
Score = 28.8 bits (65), Expect = 9.0
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 25/119 (21%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAA--------SPW-------------FEGYLVLRAMLG 225
R + L+ +L+ +++GA AA SPW G + R
Sbjct: 126 RTAKVFFLLLALILLILVGAVFAAVIAKLLANSPWGVFTVFLTIPLAVLMGIYLYRLRGN 185
Query: 226 FVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLGYIAISGIAYYIHS----WRILQ 280
S++ ++ +G A I V L +I I I +I S W +LQ
Sbjct: 186 MGISSVIGLALLILAIYLGSVVPIDAPIFTGSLVILVWIIILFIYAFIASVLPVWLLLQ 244
>gnl|CDD|233683 TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific
IIBC component. This model represents a family of fused
PTS enzyme II B and C domains. A gene from Clostridium
has been partially characterized as a maltose
transporter, while genes from Fusobacterium and
Klebsiella have been proposed to transport the five
non-standard isomers of sucrose [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 524
Score = 28.6 bits (64), Expect = 9.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 249 TIAGISYLFPVPLGYIAISGIAYYIH 274
+IAGI L +G I ISGI YIH
Sbjct: 128 SIAGIKTLDTSIIGAIIISGIITYIH 153
>gnl|CDD|220403 pfam09788, Tmemb_55A, Transmembrane protein 55A. Members of this
family catalyze the hydrolysis of the 4-position
phosphate of phosphatidylinositol 4,5-bisphosphate, in
the reaction: 1-phosphatidyl-myo-inositol
4,5-bisphosphate + H(2)O =
1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Length = 258
Score = 28.3 bits (63), Expect = 9.4
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 185 GSRFGRKRALMGSLVCQL--VLGAGVAASPW 213
GSRF R+R+L+ L+ L V+ G+ A W
Sbjct: 192 GSRFARRRSLLCFLLALLFIVVAVGLTAGTW 222
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.427
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,070,581
Number of extensions: 2641221
Number of successful extensions: 2658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2620
Number of HSP's successfully gapped: 112
Length of query: 535
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 433
Effective length of database: 6,413,494
Effective search space: 2777042902
Effective search space used: 2777042902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)