RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3965
(535 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 5e-09
Identities = 98/598 (16%), Positives = 170/598 (28%), Gaps = 226/598 (37%)
Query: 53 LSLLNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDE-------- 104
LS ++ + +F A Q + F+ PE + F DDE
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQ-----LQEQFNK-ILPE---PTEGFAADDEPTTPAELV 61
Query: 105 -KF-GY-----NPCAIKDLD---------YSQSY------HDLL--LESENVTTTRPCQK 140
KF GY P + D + Y H L L EN TT ++
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 141 WL---YDTNNFGDTIISEPESHS-YEMQSDFDVQLSKLYT---GQSNLDDTGSRFG--RK 191
+ + + + + + ++L GQ N DD F R
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGE---GNAQLVAIFGGQGNTDDY---FEELRD 175
Query: 192 -----RALMGSLV------CQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCM 240
L+G L+ ++ + A F G
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT------------------QGL---- 213
Query: 241 EIVGGKWLTIA----GISYLF--PV--PLGYIAISGIAYYIHSWRILQW----------- 281
I+ +WL YL P+ PL I + +A+Y+ + ++L +
Sbjct: 214 NIL--EWLENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 282 -------VITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAAR------------ 322
++TA I E+ W E ++ A
Sbjct: 270 ATGHSQGLVTAV---------AIAETDSW-------ESFFVSVRKAITVLFFIGVRCYEA 313
Query: 323 FNDKTLPANTDKLLKQSV-------SSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFS 375
+ + +LP +L+ S+ S M + + +L + + ++ +
Sbjct: 314 YPNTSLPP---SILEDSLENNEGVPSPM-------LSISNLTQEQVQDYVN------KTN 357
Query: 376 VYL-----VYYGLVLNLSNIGGDVYVNTVISG--ESFNSTTLSTSSILCFHDLSTSCVPG 428
+L V LV N G N V+SG +S L+ L S +P
Sbjct: 358 SHLPAGKQVEISLV-N----GAK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 429 IVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISLAMI------G 482
+ L P V F + + +I
Sbjct: 410 SERKLKFSNRFL---------P-------------VASPF-HSHLLVPASDLINKDLVKN 446
Query: 483 KFAISSSNVVMPVYTAELFPTK----MRNLGVGASSVPAGVALILI-PYLWDMVNSFT 535
+ ++ ++ +PVY T +R L S V I+ P W+ F
Sbjct: 447 NVSFNAKDIQIPVY-----DTFDGSDLRVL--SGSISERIVDCIIRLPVKWETTTQFK 497
Score = 37.3 bits (86), Expect = 0.013
Identities = 52/344 (15%), Positives = 92/344 (26%), Gaps = 138/344 (40%)
Query: 274 HSWRILQWVITAPTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTD 333
+S R L ++ ++ ++L +P + + L++ +FN K LP T+
Sbjct: 4 YSTRPL--TLSHGSLEHVLL---VPTAS-FF--------IASQLQE--QFN-KILPEPTE 46
Query: 334 KLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGD 393
E + +L +L Y ++ S +G
Sbjct: 47 GFAADD-----EPTT----PAELV-----------------GKFLGYVSSLVEPSKVGQF 80
Query: 394 VYVNTVISGESFNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILI------------ 441
V + E F + L + I H L+ + + + LI
Sbjct: 81 DQVLNLCLTE-FENCYLEGNDI---HALAAK-LLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 442 ---------LLKMGRR-----------------------------RPLC--LTTMAAGVA 461
L + L L +A
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--E 193
Query: 462 CLVTLA---------FPQG----SWMT---------------ISLAMIGKFAISSSNVVM 493
L L F QG W+ IS +IG I ++ V+
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG--VIQLAHYVV 251
Query: 494 PVYTAELFPTKMRNLGVGASSVPAGV---ALILIPYLWDMVNSF 534
P ++R+ GA+ G+ I W+ SF
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE---SF 292
Score = 33.5 bits (76), Expect = 0.22
Identities = 52/316 (16%), Positives = 97/316 (30%), Gaps = 112/316 (35%)
Query: 98 VFTRDDEKFGYNPCAIKDLDYSQSYHDLLLESENVTTTRPCQKWLYDTNNFGDTIISEPE 157
V+ R D F Y S D+++ + P ++ G I
Sbjct: 1645 VWNRADNHFKDT--------YGFSILDIVINN-------PVNLTIHFGGEKGKRIRENYS 1689
Query: 158 SHSYEMQSDFDVQLSKLYTGQSNLDDTGSRF-GRKRALMGSLVCQ--LVLGAGVAASPWF 214
+ +E D ++ K++ + N T F K L + Q L L AA F
Sbjct: 1690 AMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQFTQPALTL-MEKAA---F 1744
Query: 215 EGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWLTIAGISYLFPVPLG-YIAISGIAYYI 273
E L++ G + F AG S LG Y A++ +A
Sbjct: 1745 E---DLKSK-GLIPADATF-----------------AGHS------LGEYAALASLAD-- 1775
Query: 274 HSWRILQWVITAPTIIFLI------LWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKT 327
V++ +++ ++ + +P +G++ M A +
Sbjct: 1776 --------VMSIESLVEVVFYRGMTMQVAVPRDE-----LGRSNYGM-----IAINPGRV 1817
Query: 328 LPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNL 387
+ + + L+ V + + +G VE+ V Y
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEI--------------VNY----------------- 1846
Query: 388 SNIGGDVYVNTVISGE 403
N+ Y V +G+
Sbjct: 1847 -NVENQQY---VAAGD 1858
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 8e-08
Identities = 73/527 (13%), Positives = 124/527 (23%), Gaps = 215/527 (40%)
Query: 99 FTRDDEKFGYN-------PCAIKDLDY------------SQSYHDLLLESENVTTTRP-- 137
F + ++ Y + + D + +++ + V+ T
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 138 ---CQK------------------WLYDTNNFGDTIISEPESHSYEMQSDFDVQLSKLYT 176
K +L I +E S + + Q +LY
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQPSMMTRM-YIEQRDRLYN 121
Query: 177 -GQSNLDDTGSRFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSG 235
Q SR L +L +L P +++ +LG
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQAL-LEL--------RP--AKNVLIDGVLGS--------- 161
Query: 236 FVLCMEIVGGK-WLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILW 294
GK W+ + S+++ + F I W
Sbjct: 162 ---------GKTWVALDVCL--------------------SYKVQC------KMDFKIFW 186
Query: 295 WCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVL 354
L + VL+ + L D +
Sbjct: 187 ----------LNLKNCNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSNIK----LRI 227
Query: 355 DLWRTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFN--STTLST 412
+ L RL+ Y L LVL +V +FN L T
Sbjct: 228 HSIQAELRRLLKSKPYE----NCL----LVLL------NVQNAKAW--NAFNLSCKILLT 271
Query: 413 S---SILCFHDLSTSCVPGIVEI-----PAIAMSILIL-LKMGRRRPLCLTTMAAGVACL 463
+ + F +T+ + P S+L+ L RP L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC---RPQDLPREVLTTNPR 328
Query: 464 VTLAFPQGSWMTISLAMIGKF---------------------AISSS-NVVMPVYTAELF 501
L++I + I SS NV+ P ++F
Sbjct: 329 R-------------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 502 PTKMRNLGVGASSVPAGVALILIPY-----LW---------DMVNSF 534
L V P IP +W +VN
Sbjct: 376 ----DRLSV----FPPSA---HIPTILLSLIWFDVIKSDVMVVVNKL 411
Score = 43.7 bits (102), Expect = 2e-04
Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 38/193 (19%)
Query: 2 SSDKMGADTVSNSTATPSNEKPPSSPVTTNEDPISNAIGEFGRWQFQLTVLLSLLNIP-- 59
+ K D +S +T T + S +T +E ++ + ++P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDE-----VKSLLLKY-----LDCRPQDLPRE 321
Query: 60 -CTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDY 118
T + L+ A A DN+ H++ + I N ++ +Y
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--------LN--VLEPAEY 371
Query: 119 SQSYHDL--LLESENVTTTRPCQKWLYDTNNFGDTIISEPESHS-------------YEM 163
+ + L S ++ T W + ++++ +S +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 164 QSDFDVQLSKLYT 176
+ V+L Y
Sbjct: 432 YLELKVKLENEYA 444
Score = 37.5 bits (86), Expect = 0.011
Identities = 42/354 (11%), Positives = 84/354 (23%), Gaps = 145/354 (40%)
Query: 127 LESENVTTTRPCQ-KWLYDTNNFG-----DTIISEPESHSYEMQSDFDVQLSKLYTGQSN 180
S V + WL N +T++ + Y++ ++ + +
Sbjct: 171 CLSYKVQCKMDFKIFWL----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 181 LDDTGSRFGR-------KRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVF 233
+ + R + L LVL V + A C ++
Sbjct: 227 IHSIQAELRRLLKSKPYENCL-------LVL-LNVQ-NAK-----AWNAF-NLSCKILLT 271
Query: 234 SGFVLCMEIVGG-------------------------KWLTIAGISYLFPV------PLG 262
+ F + + K+L L P P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDL-PREVLTTNPR- 328
Query: 263 YIAISGIAYYIHSW--RILQW----------VITA------------------------- 285
+S IA I W +I +
Sbjct: 329 --RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 286 -PTIIFLILWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDK---------- 334
PTI+ ++W+ + + + M V+ + +L
Sbjct: 387 IPTILLSLIWFDVIK-----------SDVMVVVNK---LHKYSL-VEKQPKESTISIPSI 431
Query: 335 --LLKQSVSSMKE------DSGKKVEVLDLWRTPLMRLISCVQYVVWFSVYLVY 380
LK + + D + D L QY ++S ++ +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL---DQY--FYS-HIGH 479
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 43.5 bits (103), Expect = 1e-04
Identities = 48/384 (12%), Positives = 107/384 (27%), Gaps = 95/384 (24%)
Query: 187 RFGRKR----ALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVF--SGFVLCM 240
R + L+ + L +G A+ VL + G+ F G+ C
Sbjct: 88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW------FQGMGWPPCG 141
Query: 241 EIVG--------GKWLTIAGISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLI 292
+ G +++ ++ + + + + W ++ I+ +
Sbjct: 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 201
Query: 293 LWWCI----PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSG 348
+ + P+S EE D + + +E +
Sbjct: 202 FAFAMMRDTPQSCGL----PPIEEYKNDYPDDY-----------------NEKAEQELTA 240
Query: 349 KKVEVLDLWRTPLMRLISCVQYVVWFSVYLVYYG----LVLNLSNIGGDVYVNTVISGES 404
K++ + + L+ I + VYL+ YG L +
Sbjct: 241 KQIFMQYVLPNKLLWYI----AIANVFVYLLRYGILDWSPTYLKEVKH------------ 284
Query: 405 FNSTTLSTSSILCFHDLSTSCVPGIVEIPAIAMSILI------LLKMGRRRPLCL-TTMA 457
F +S + E I ++L + + R T+
Sbjct: 285 -------------FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331
Query: 458 AGVACLVTLAFPQGSWMTISLAMIGKFAISSSNVVMPVYTAELFPTK-------MRNLG- 509
+ + + + ++ F I +++ ++ EL P K L
Sbjct: 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391
Query: 510 --VGASSVPAGVALILIPYLWDMV 531
G+ + A V + + WD
Sbjct: 392 YLGGSVAASAIVGYTVDFFGWDGG 415
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter,
drug transport uridine, nucleosides, membrane protein;
HET: URI DMU; 2.44A {Vibrio cholerae}
Length = 424
Score = 33.9 bits (78), Expect = 0.14
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
Query: 192 RALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFS----GFVLCMEIVGGKW 247
R + G+ Q LGA + PW G +LR V I + F+ + G +
Sbjct: 36 RTVGGAFAIQFSLGAFILYVPW--GQELLRGFSDAVSNVINYGNDGTSFLFGGLVSGKMF 93
Query: 248 LTIAGISYLF-----PVPLGYIAISGIAYYIHSWRILQWVI 283
G ++F P + + A+ + YY ++QWVI
Sbjct: 94 EVFGGGGFIFAFRVLPTLIFFSALISVLYY---LGVMQWVI 131
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 33.8 bits (77), Expect = 0.14
Identities = 43/351 (12%), Positives = 104/351 (29%), Gaps = 61/351 (17%)
Query: 187 RFGRKRALMGSLVCQLVLGAGV---AASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIV 243
+ G ++ L+ + LV+ A P + +++ +++G + + F+ +E
Sbjct: 69 KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128
Query: 244 GGKWLTIAGISYLFP---VPLGYIA---ISGIAYYIHSWRILQWVITAPTIIFLILWWCI 297
K + + +G+ I GI + I++ + I+ ++L++
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188
Query: 298 PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLW 357
++P + + L+L+
Sbjct: 189 TDAPS-------------------------------SATVANAVGANHSAFSLKLALELF 217
Query: 358 RTPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILC 417
R P + +S V + Y V+ N + T G + +
Sbjct: 218 RQPKLWFLSLYVIGVSCT-YDVFDQQFANFFTS----FFATGEQGTRVFGYVTTMGEL-- 270
Query: 418 FHDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTIS 477
+ + + LI+ ++G + L L ++ +F + +
Sbjct: 271 ------------LNASIMFFAPLIINRIGGKNALLLA-GTIMSVRIIGSSFATSALEVVI 317
Query: 478 LAMIGKFAISSSNVVMPVYTAELFPTKMRNLGVG-ASSVPAGVALILIPYL 527
L + F + V Y F + +A+I + L
Sbjct: 318 LKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 32.6 bits (75), Expect = 0.28
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 22/127 (17%)
Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGF-VCVSIVFSGFVLCMEIV-- 243
R GR+ ++ + ++ + + AM G V G V+ +
Sbjct: 61 RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGV-----GGVMARTLPRD 115
Query: 244 --GGKWLT-----IAGISYLFPV--PLGYIAISGIAYYIHSWRILQWVITAPTIIFLIL- 293
L + + P+ PL I G+ + +WR +
Sbjct: 116 LYERTQLRHANSLLNMGILVSPLLAPL----IGGLLDTMWNWRACYLFLLVLCAGVTFSM 171
Query: 294 WWCIPES 300
+PE+
Sbjct: 172 ARWMPET 178
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 30.9 bits (70), Expect = 1.0
Identities = 12/112 (10%), Positives = 29/112 (25%), Gaps = 32/112 (28%)
Query: 367 CVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCFHDLSTSCV 426
V+ ++Y+ + + + V + + +D
Sbjct: 121 VVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDND------ 174
Query: 427 PGIVEIPAIAMSILILLKMGRR-------RPLCL------TTMAAGVACLVT 465
IA L+++ P+CL + G L++
Sbjct: 175 --------IA-----LVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLIS 213
>1j7m_A Matrix metalloproteinase 2; beta sheet, alpha helix, hydrolase; NMR
{Homo sapiens} SCOP: g.14.1.2
Length = 72
Score = 26.8 bits (59), Expect = 3.7
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 20/61 (32%)
Query: 61 TWHIFALTFQAADQNFWCAQTDNFDHISFPEWINISGVFTRDDEKFGYNPCAIKDLDYSQ 120
+ + +D WCA T N+D DD K+G+ C D +
Sbjct: 32 NKYESCTSAGRSDGKMWCATTANYD----------------DDRKWGF--CP--DQGWIS 71
Query: 121 S 121
S
Sbjct: 72 S 72
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 3.8
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 428 GIVEIPAIAMSILILLKMGRRR-----PLCLTTMAAGV 460
G+ + A+ K + + TM+A V
Sbjct: 1051 GMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWV 1088
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 28.9 bits (65), Expect = 5.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 138 CQKWLYDTNNFGDTIISEPE--SHSYEMQSDFDVQ 170
C WL + N D I +P S+S M+ FDVQ
Sbjct: 599 CLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQ 633
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis,
ligand binding, transferase; 2.00A {Schizosaccharomyces
pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A*
1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Length = 159
Score = 27.5 bits (62), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 320 AARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTP 360
AR N + + L+K +V +M E K+E +D+ P
Sbjct: 24 HARGNLQA----IEPLVKGAVETMIEKHDVKLENIDIESVP 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.427
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,137,787
Number of extensions: 482962
Number of successful extensions: 821
Number of sequences better than 10.0: 1
Number of HSP's gapped: 812
Number of HSP's successfully gapped: 29
Length of query: 535
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 437
Effective length of database: 3,965,535
Effective search space: 1732938795
Effective search space used: 1732938795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)