RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3965
         (535 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 53.5 bits (127), Expect = 4e-08
 Identities = 33/349 (9%), Positives = 83/349 (23%), Gaps = 43/349 (12%)

Query: 187 RFGRKRALMGSL----VCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEI 242
           R   +  L   L       L +G    A+       VL  + G+             +  
Sbjct: 85  RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 144

Query: 243 VGGKWLTIAGISYLFPVPLGYIAISGI----AYYIHSWRILQWVITAPTIIFLILWWCIP 298
              K        +     +G      +      + + W    ++     I+  +  + + 
Sbjct: 145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204

Query: 299 ESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWR 358
                   +   EE      D      +                 +E + K++ +  +  
Sbjct: 205 RDTPQSCGLPPIEEYKNDYPDDYNEKAE-----------------QELTAKQIFMQYVLP 247

Query: 359 TPLMRLISCVQYVVWFSVYLVYYGLVLNLSNIGGDVYVNTVISGESFNSTTLSTSSILCF 418
             L+  I+     V+   Y +       L  +                           +
Sbjct: 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH------------------FALDKSSW 289

Query: 419 HDLSTSCVPGIVEIPAIAMSILILLKMGRRRPLCLTTMAAGVACLVTLAFPQGSWMTISL 478
                        +    MS  +         +   T+      +  +       + +  
Sbjct: 290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349

Query: 479 AMIGKFAISSSNVVMPVYTAELFPTKMRNLGVGASSVPAGVALILIPYL 527
            ++  F I    +++ ++  EL P K      G + +   +   +    
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 398


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 33.6 bits (75), Expect = 0.053
 Identities = 19/204 (9%), Positives = 48/204 (23%), Gaps = 9/204 (4%)

Query: 187 RFGRKRALMGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGK 246
           + G ++ L+  +   LV+ A      +         +   V    +   F      V   
Sbjct: 69  KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAF 128

Query: 247 WLTIA---------GISYLFPVPLGYIAISGIAYYIHSWRILQWVITAPTIIFLILWWCI 297
              ++            +         +I GI + I++  +         I+ ++L++  
Sbjct: 129 IEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188

Query: 298 PESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLW 357
            ++P                           P      L     S   D   +       
Sbjct: 189 TDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 358 RTPLMRLISCVQYVVWFSVYLVYY 381
                       +    ++  +  
Sbjct: 249 SFFATGEQGTRVFGYVTTMGELLN 272



 Score = 28.2 bits (61), Expect = 2.6
 Identities = 15/112 (13%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 195 MGSLVCQLVLGAGVAASPWFEGYLVLRAMLGFVCVSIVFSGFVLCMEIVGGKWL-TIAGI 253
           + +     V   G + +      ++L+ +  F    ++   F         ++  TI  +
Sbjct: 293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352

Query: 254 SYLFPVPLGYI---AISGIAYYIHSWRILQWVITAPTIIFLILWWCIPESPR 302
            + F   L  I    ++G  Y    ++    V+    + F ++       P 
Sbjct: 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404


>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 75

 Score = 28.4 bits (63), Expect = 0.49
 Identities = 5/40 (12%), Positives = 13/40 (32%)

Query: 56 LNIPCTWHIFALTFQAADQNFWCAQTDNFDHISFPEWINI 95
          L          +  +  +     +  +N   I F E++ +
Sbjct: 31 LGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKM 70


>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 150

 Score = 28.8 bits (64), Expect = 0.95
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 320 AARFNDKTLPANTDKLLKQSVSSMKEDSGKKVEVLDLWRTP-LMRLISCVQYVVWFSVYL 378
            AR N +      + L+K +V +M E    K+E +D+   P    L   ++         
Sbjct: 16  HARGNLQA----IEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIR---ASIARN 68

Query: 379 VYYGLVLNLSNIGGDVYVNTVISGESFNSTT 409
            Y  ++     I G       IS    +   
Sbjct: 69  TYDAVIGIGVLIKGSTMHFEYISEAVVHGLM 99


>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
           orientalis [TaxId: 31958]}
          Length = 394

 Score = 27.4 bits (59), Expect = 5.0
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 293 LWWCIPESPRWLLTMGKTEEAMEVLKDAARFNDKTLPANTDKLLKQSVSSMKEDSG 348
           +         W+ T        +V+ D  +F+ +      D++  + +   +E  G
Sbjct: 29  IGSGADAETHWMAT--AHAVVRQVMGDHQQFSTRRRWDPRDEIGGKGIFRPRELVG 82


>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the
          anaphase-promoting complex {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 161

 Score = 26.2 bits (57), Expect = 8.2
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 16 ATPSNEKPPSSPVTTNEDPISNAIGEFGRW 45
          ATP+   P + P           IG    W
Sbjct: 1  ATPNKTPPGADPKQLERTGTVREIGSQAVW 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,001,326
Number of extensions: 92587
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 14
Length of query: 535
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,171,896
Effective search space: 521493720
Effective search space used: 521493720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)