BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3966
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNS 183
+L NL++FN+S N I L LYL NSL +P EI L L VL L N
Sbjct: 230 DLSNLQIFNISAN--------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR 281
Query: 184 LTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIIT 239
LT +P G +QL+ DN + +LP NL L+ L + N L +I+T
Sbjct: 282 LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 81 LRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139
+LDLSN +I ++ I + L+ L N LT LP ++ NL NL+V +LS N+L
Sbjct: 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 140 QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSL 184
P ++ LKY Y +N + +P E LC L L + GN L
Sbjct: 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 61 LLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITN-FPLSTLIARNNLLTAESLP 119
L L N+L+ P +NLR LDLS+NR+T LP + + F L +N++T +LP
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT--TLP 309
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQIL 146
+ NL NL+ + GN LE+ ++IL
Sbjct: 310 WEFGNLCNLQFLGVEGNPLEKQFLKIL 336
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 197 LEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITXXXXXXXXXXXXXXXXX 256
L L L+ N L LPA I NL L+ L L +N+L +LP E+ +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-- 306
Query: 257 XRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYK 291
TLP E L L L + NPL +F+ +T K
Sbjct: 307 --TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 80 NLRSLDLSNNRITHLP--QAITNFPLSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGN 136
N+R L L N++ + + +TN L+ LI N L +SLP + L NLK L N
Sbjct: 64 NVRYLALGGNKLHDISALKELTN--LTYLILTGNQL--QSLPNGVFDKLTNLKELVLVEN 119
Query: 137 QLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGD 193
QL+ P + D + L YLYL +N L +P+ + +KL L L L N L +P+ F
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDK 179
Query: 194 LYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEII 238
L QL+ L L+DNQL+S+P + L L + L NN ++I+
Sbjct: 180 LTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 148 IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQ 206
+P ++YL LG N L+ + + +L L L L GN L +P+ F L L+ L+L +NQ
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 207 LESLPASI-SNLKMLKSLLLHNNKLRTLPTEI 237
L+SLP + L L L L++N+L++LP +
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGV 152
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 156 LGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI- 214
+ NNS + I L + L+LGGN L DI +L L LIL+ NQL+SLP +
Sbjct: 47 IANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVF 105
Query: 215 SNLKMLKSLLLHNNKLRTLPTEI 237
L LK L+L N+L++LP +
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGV 128
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 40 ATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAI 98
Q++ LPN ++K N+ L+L N L PD K TNL L L +N++ LP+ +
Sbjct: 94 GNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGV 152
Query: 99 ----TNFPLSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLK 152
TN L+ L NN L +SLP+ + L LK +L+ NQL+ P + D + +L
Sbjct: 153 FDKLTN--LTRLDLDNNQL--QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLT 208
Query: 153 YLYLGNNSLNHVPREI 168
+++L NN + +I
Sbjct: 209 HIWLLNNPWDCACSDI 224
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 131 FNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP 188
+L N L+ P + D + +L LYLG N L +P + NKL L L+L N L +P
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 189 D-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEII 238
+ F L QL+ L L+ NQL+SLP + L LK L L+ N+L+++P +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 116 ESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLC 172
+SLP + L +L L GN+L+ P + + + +L YL L N L +P + +KL
Sbjct: 41 KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 173 KLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
+L L+L N L +PD F L QL+ L L NQL+S+P + L L+ + LH+N
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P +I TL++ NNL+ P + LR+L++S N++T LP L I N L
Sbjct: 60 PAHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGL-LELSIFSNPLTH 115
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
+LP S L L +F GNQL P+ P L+ L + +N L +P ++LCKL
Sbjct: 116 LPALP---SGLCKLWIF---GNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKL 166
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
+ N LT +P L +L +SDNQL SLP S L L + +NN+L +LP
Sbjct: 167 WAYN---NQLTSLPMLPSGLQELS---VSDNQLASLPTLPSELYKLWA---YNNRLTSLP 217
Query: 235 T 235
Sbjct: 218 A 218
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 84 LDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI 143
L++ + +T LP + + +I NNL + +LP + L+ +SGNQL P+
Sbjct: 45 LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPE------LRTLEVSGNQLTSLPV 98
Query: 144 QILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203
P L L + +N L H+P + LCKL + GN LT +P L +L +S
Sbjct: 99 LP---PGLLELSIFSNPLTHLPALPSGLCKLWIF---GNQLTSLPVLPPGLQELS---VS 149
Query: 204 DNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
DNQL SLPA S L L + +NN+L +LP
Sbjct: 150 DNQLASLPALPSELCKLWA---YNNQLTSLP 177
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 24/185 (12%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P + L ++ N L+ P L+ L +S+N++ LP + L L A NN LT
Sbjct: 120 PSGLCKLWIFGNQLTSLP---VLPPGLQELSVSDNQLASLPALPSE--LCKLWAYNNQLT 174
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKY-LYLGNNSLNHVPREINKLCK 173
SLP S L+ L V S NQL P +P+ Y L+ NN L +P + L +
Sbjct: 175 --SLPMLPSGLQELSV---SDNQLASLPT----LPSELYKLWAYNNRLTSLPALPSGLKE 225
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
L V GN LT +P +L +L ++S N+L SLP S L SL ++ N+L L
Sbjct: 226 LIV---SGNRLTSLPVLPSELKEL---MVSGNRLTSLPMLPSG---LLSLSVYRNQLTRL 276
Query: 234 PTEII 238
P +I
Sbjct: 277 PESLI 281
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P + L++ N L+ P S+ L+ L +S NR+T LP + LS + RN L
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSE---LKELMVSGNRLTSLPMLPSGL-LSLSVYRNQL-- 273
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLG-----NNSLNHVPREIN 169
LP+ + +L + NL GN L + +Q L T Y G + + PRE
Sbjct: 274 -TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETR 332
Query: 170 KL 171
L
Sbjct: 333 AL 334
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGG 181
+L L L+ NQL P+ + D + L LYLG N L +P + ++L KL L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEII 238
N L IP F L L+ L LS NQL+S+P + L L+++ L N+ EI+
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 151 LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLE 208
L +L L N L + + + L +L L L N L +P F L QL+ L L NQL+
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 209 SLPASI-SNLKMLKSLLLHNNKLRTLP 234
SLP+ + L LK L L+ N+L+++P
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIP 147
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 121 DMSNLK---NLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLH 175
D+S LK NL L+GNQL+ P + D + LK L L N L +P + +KL L
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 176 VLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTL 233
L+L N L +P F L L L LS NQL+SLP + L LK L L+ N+L+++
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 234 PTEI 237
P +
Sbjct: 197 PDGV 200
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 80 NLRSLDLSNNRITHLP--QAITNFPLSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGN 136
N+R L L N++ + + +TN L+ LI N L +SLP + L NLK L N
Sbjct: 64 NVRYLALGGNKLHDISALKELTN--LTYLILTGNQL--QSLPNGVFDKLTNLKELVLVEN 119
Query: 137 QLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGD 193
QL+ P + D + L YL L +N L +P+ + +KL L L L N L +P+ F
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 194 LYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
L QL+ L L NQL+S+P + L L+ + LH+N
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 148 IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQ 206
+P ++YL LG N L+ + + +L L L L GN L +P+ F L L+ L+L +NQ
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 207 LESLPASI-SNLKMLKSLLLHNNKLRTLPTEI 237
L+SLP + L L L L +N+L++LP +
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 40 ATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAI 98
Q++ LPN ++K N+ L+L N L PD K TNL L+L++N++ LP+ +
Sbjct: 94 GNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152
Query: 99 ----TNFPLSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLK 152
TN L+ L N L +SLP+ + L LK L NQL+ P + D + +L+
Sbjct: 153 FDKLTN--LTELDLSYNQL--QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Query: 153 YLYLGNN 159
Y++L +N
Sbjct: 209 YIWLHDN 215
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 127 NLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSL 184
N ++ L NQ+ + + D + LK LYLG+N L +P + + L +L VL LG N L
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 185 TDIPDT-FGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
T +P F L L+ L + N+L LP I L L L L N+L+++P
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 119 PKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHV 176
P +L NLK L NQL P+ + D + L L LG N L +P + ++L L
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP 211
L + N LT++P L L L L NQL+S+P
Sbjct: 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITN--FPLSTLIARNNLL 113
N+ L L N L P T L LDL N++T LP A+ + L L N L
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI 168
T LP+ + L +L L NQL+ P D + +L + YL N + R+I
Sbjct: 125 T--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGG 181
+L L L+ NQL P+ + D + L LYLG N L +P + ++L KL L L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKL 230
N L IP F L L+ L LS NQL+S+P + L L+++ L N+
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 151 LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLE 208
L +L L N L + + + L +L L L N L +P F L QL+ L L NQL+
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 209 SLPASI-SNLKMLKSLLLHNNKLRTLP 234
SLP+ + L LK L L+ N+L+++P
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIP 147
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 80 NLRSLDLSNNRITHLPQAITNFPLST--LIARNNLLTAESLP-KDMSNLKNLKVFNLSGN 136
N S+D S+ ++T +P +N P T L ++N L+ SLP K L L++ L+ N
Sbjct: 17 NKNSVDCSSKKLTAIP---SNIPADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDN 71
Query: 137 QLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGD 193
+L+ P I ++ L+ L++ +N L +P + ++L L L L N L +P F
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 194 LYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLP 234
L +L L L N+L+SLP + L LK L L+NN+L+ +P
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 152 KYLYLGNNSLNHVP-REINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLES 209
K L L +N L+ +P + ++L KL +L L N L +P F +L LE L ++DN+L++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 210 LPASI-SNLKMLKSLLLHNNKLRTLPTEII 238
LP + L L L L N+L++LP +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++NQL LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++NQL LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++NQL LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++NQL LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L LD+S+N+++ + L +LIA NN + ++ P + L NL +L+G
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI-SDITPLGI--LTNLDELSLNG 226
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
NQL+ + + L L L NN ++++ ++ L KL L LG N +++I G L
Sbjct: 227 NQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAG-LT 283
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L++NQLE + + ISNLK L L L+ N +
Sbjct: 284 ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 317
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L++N ++ D TNL L+LS+N I+ + L L +N +T
Sbjct: 108 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDL 166
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLH 175
K ++NL L+ ++S N++ + + + L+ L NN ++ + P I L L
Sbjct: 167 ---KPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGI--LTNLD 220
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
LSL GN L DI T L L L L++NQ+ +L A +S L L L L N++
Sbjct: 221 ELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
D NL ++ SNN++T + PL L ++L + D++ L NL N
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADITPLANLT--N 108
Query: 133 LSGNQLEQFPIQILDIPTLK------YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
L+G L F QI DI LK L L +N+++ + ++ L L LS N +TD
Sbjct: 109 LTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTD 165
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIIT 239
+ +L LE L +S N++ + ++ L L+SL+ NN++ + P I+T
Sbjct: 166 LKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 217
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L LD+S+N+++ + L +LIA NN + ++ P + L NL +L+G
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI-SDITPLGI--LTNLDELSLNG 225
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
NQL+ + + L L L NN ++++ ++ L KL L LG N +++I G L
Sbjct: 226 NQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAG-LT 282
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L++NQLE + + ISNLK L L L+ N +
Sbjct: 283 ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 316
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L++N ++ D TNL L+LS+N I+ + LS L + L
Sbjct: 108 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLNFGN 160
Query: 117 SLP--KDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCK 173
+ K ++NL L+ ++S N++ + + + L+ L NN ++ + P I L
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGI--LTN 217
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L LSL GN L DI T L L L L++NQ+ +L A +S L L L L N++
Sbjct: 218 LDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 272
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
D NL ++ SNN++T + PL L ++L + D++ L NL N
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADITPLANLT--N 108
Query: 133 LSGNQLEQFPIQILDIPTLK------YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
L+G L F QI DI LK L L +N+++ + ++ L L L+ GN +TD
Sbjct: 109 LTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNF-GNQVTD 164
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIIT 239
+ +L LE L +S N++ + ++ L L+SL+ NN++ + P I+T
Sbjct: 165 LKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 216
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L LD+S+N+++ + L +LIA NN + ++ P + L NL +L+G
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI-SDITPLGI--LTNLDELSLNG 230
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
NQL+ + + L L L NN ++++ ++ L KL L LG N +++I G L
Sbjct: 231 NQLKDIGT-LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LT 287
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L++NQLE + + ISNLK L L L+ N +
Sbjct: 288 ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L++N ++ D TNL L+LS+N I+ + LS L + L
Sbjct: 113 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN 165
Query: 117 SLP--KDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCK 173
+ K ++NL L+ ++S N++ + + + L+ L NN ++ + P I L
Sbjct: 166 QVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGI--LTN 222
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L LSL GN L DI T L L L L++NQ+ +L A +S L L L L N++
Sbjct: 223 LDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 277
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
D NL ++ SNN++T + PL L ++L + D++ L NL N
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADITPLANLT--N 113
Query: 133 LSGNQLEQFPIQILDIPTLK------YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
L+G L F QI DI LK L L +N+++ + ++ L L LS GN +TD
Sbjct: 114 LTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSF-GNQVTD 169
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIIT 239
+ +L LE L +S N++ + ++ L L+SL+ NN++ + P I+T
Sbjct: 170 LKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 221
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L LD+S+N+++ + L +LIA NN + ++ P + L NL +L+G
Sbjct: 173 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI-SDITPLGI--LTNLDELSLNG 229
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
NQL+ + + L L L NN ++++ ++ L KL L LG N +++I G L
Sbjct: 230 NQLKDIGT-LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LT 286
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L++NQLE + + ISNLK L L L+ N +
Sbjct: 287 ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 320
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L++N ++ D TNL L+LS+N I+ + LS L + L
Sbjct: 112 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN 164
Query: 117 SLP--KDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCK 173
+ K ++NL L+ ++S N++ + + + L+ L NN ++ + P I L
Sbjct: 165 QVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGI--LTN 221
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L LSL GN L DI T L L L L++NQ+ +L A +S L L L L N++
Sbjct: 222 LDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 276
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
D NL ++ SNN++T + PL L ++L + D++ L NL N
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADITPLANLT--N 112
Query: 133 LSGNQLEQFPIQILDIPTLK------YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
L+G L F QI DI LK L L +N+++ + ++ L L LS GN +TD
Sbjct: 113 LTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSF-GNQVTD 168
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIIT 239
+ +L LE L +S N++ + ++ L L+SL+ NN++ + P I+T
Sbjct: 169 LKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 220
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L LD+S+N+++ + L +LIA NN + ++ P + L NL +L+G
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI-SDITPLGI--LTNLDELSLNG 226
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
NQL+ + + L L L NN ++++ ++ L KL L LG N +++I G L
Sbjct: 227 NQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAG-LT 283
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L++NQLE + + ISNLK L L L+ N +
Sbjct: 284 ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 317
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L++N ++ D TNL L+LS+N I+ + L L +N +T
Sbjct: 108 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL 166
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLH 175
K ++NL L+ ++S N++ + + + L+ L NN ++ + P I L L
Sbjct: 167 ---KPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGI--LTNLD 220
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
LSL GN L DI T L L L L++NQ+ +L A +S L L L L N++
Sbjct: 221 ELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
D NL ++ SNN++T + PL L ++L + D++ L NL N
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADITPLANLT--N 108
Query: 133 LSGNQLEQFPIQILDIPTLK------YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
L+G L F QI DI LK L L +N+++ + ++ L L L+ N +TD
Sbjct: 109 LTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTD 165
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIIT 239
+ +L LE L +S N++ + ++ L L+SL+ NN++ + P I+T
Sbjct: 166 LKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 217
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L LD+S+N+++ + L +LIA NN + ++ P + L NL +L+G
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI-SDITPLGI--LTNLDELSLNG 225
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
NQL+ + + L L L NN ++++ ++ L KL L LG N +++I G L
Sbjct: 226 NQLKDIGT-LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LT 282
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L++NQLE + + ISNLK L L L+ N +
Sbjct: 283 ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 316
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 15/177 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L++N ++ D TNL L+LS+N I+ + LS L + L
Sbjct: 108 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLNFGN 160
Query: 117 SLP--KDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCK 173
+ K ++NL L+ ++S N++ + + + L+ L NN ++ + P I L
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGI--LTN 217
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L LSL GN L DI T L L L L++NQ+ +L A +S L L L L N++
Sbjct: 218 LDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 272
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
D NL ++ SNN++T + PL L ++L + D++ L NL N
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADITPLANLT--N 108
Query: 133 LSGNQLEQFPIQILDIPTLK------YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
L+G L F QI DI LK L L +N+++ + ++ L L L+ GN +TD
Sbjct: 109 LTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNF-GNQVTD 164
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIIT 239
+ +L LE L +S N++ + ++ L L+SL+ NN++ + P I+T
Sbjct: 165 LKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 216
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L LD+S+N+++ + L +LIA NN + ++ P + L NL +L+G
Sbjct: 170 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI-SDITPLGI--LTNLDELSLNG 226
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
NQL+ + + L L L NN ++++ ++ L KL L LG N +++I G L
Sbjct: 227 NQLKDIGT-LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG-LT 283
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L++NQLE + + ISNLK L L L+ N +
Sbjct: 284 ALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNI 317
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L++N ++ D TNL L+LS+N I+ + L L +N +T
Sbjct: 108 NLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDL 166
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLH 175
K ++NL L+ ++S N++ + + + L+ L NN ++ + P I L L
Sbjct: 167 ---KPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGI--LTNLD 220
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
LSL GN L DI T L L L L++NQ+ +L A +S L L L L N++
Sbjct: 221 ELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
D NL ++ SNN++T + PL L ++L + D++ L NL N
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADITPLANLT--N 108
Query: 133 LSGNQLEQFPIQILDIPTLK------YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
L+G L F QI DI LK L L +N+++ + ++ L L LS N +TD
Sbjct: 109 LTG--LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTD 165
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIIT 239
+ +L LE L +S N++ + ++ L L+SL+ NN++ + P I+T
Sbjct: 166 LKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 217
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 162 NHVPREINKLCKLHVLSLGGNSLTD-IPDTFGDLYQLEALILSDNQLES-LPASISNLKM 219
++P+EI + L +L+LG N ++ IPD GDL L L LS N+L+ +P ++S L M
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 220 LKSLLLHNNKL 230
L + L NN L
Sbjct: 706 LTEIDLSNNNL 716
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSF-FPDNASKFT 79
+ S+ TLD S ++ +LPN N K + L L +N + P S +
Sbjct: 367 SASLLTLDLSSNNFSGP-------ILPNLCQNPK-NTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 80 NLRSLDLSNNRITH-LPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
L SL LS N ++ +P ++ + L L N+L E +P+++ +K L+ L N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFND 477
Query: 138 L-EQFPIQILDIPTLKYLYLGNNSL-NHVPREINKLCKLHVLSLGGNSLT-DIPDTFGDL 194
L + P + + L ++ L NN L +P+ I +L L +L L NS + +IP GD
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 195 YQLEALILSDNQLE-SLPASI 214
L L L+ N ++PA++
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAM 558
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 74 NASKFTNLRSLDLS-NNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
+ S+ NL LD+S NN T +P L L N L+ + + +S LK+ N
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLN 253
Query: 133 LSGNQLEQFPIQILDIPTLKYLYLGNNSL-NHVPREINKLCK-LHVLSLGGNSL-TDIPD 189
+S NQ PI L + +L+YL L N +P ++ C L L L GN +P
Sbjct: 254 ISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 190 TFG 192
FG
Sbjct: 313 FFG 315
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 53 KKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFPLSTLIARNN 111
+ P NI + + + F +N S + LD+S N ++ ++P+ I + P ++ +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLNHVPREINK 170
+ S+P ++ +L+ L + +LS N+L+ + P + + L + L NN+L+ E+ +
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
Query: 171 L 171
Sbjct: 726 F 726
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 30/202 (14%)
Query: 56 ENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
+++ L+L +N +S + A S L+ L +S N + +P N P S + R +
Sbjct: 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP---PNLPSSLVELRIHDNR 134
Query: 115 AESLPKDM-SNLKNLKVFNLSGNQLEQ--FPIQILDIPTLKYLYLGNNSLNHVPREI--- 168
+PK + S L+N+ + GN LE F D L YL + L +P+++
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194
Query: 169 --------NKL-----------CKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLE 208
NK+ KL+ L LG N + I + + L L L L +N+L
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 209 SLPASISNLKMLKSLLLHNNKL 230
+PA + +LK+L+ + LH N +
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNI 276
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNL 128
S F A L L +S ++T +P+ + L+ L +N + A L +D+ L
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE-TLNELHLDHNKIQAIEL-EDLLRYSKL 219
Query: 129 KVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDI 187
L NQ+ L +PTL+ L+L NN L+ VP + L L V+ L N++T +
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 162 NHVPREINKLCKLHVLSLGGNSLTD-IPDTFGDLYQLEALILSDNQLES-LPASISNLKM 219
++P+EI + L +L+LG N ++ IPD GDL L L LS N+L+ +P ++S L M
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 220 LKSLLLHNNKL 230
L + L NN L
Sbjct: 703 LTEIDLSNNNL 713
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSF-FPDNASKFT 79
+ S+ TLD S ++ +LPN N K + L L +N + P S +
Sbjct: 364 SASLLTLDLSSNNFSGP-------ILPNLCQNPK-NTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 80 NLRSLDLSNNRITH-LPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
L SL LS N ++ +P ++ + L L N+L E +P+++ +K L+ L N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFND 474
Query: 138 L-EQFPIQILDIPTLKYLYLGNNSL-NHVPREINKLCKLHVLSLGGNSLT-DIPDTFGDL 194
L + P + + L ++ L NN L +P+ I +L L +L L NS + +IP GD
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 195 YQLEALILSDNQLE-SLPASI 214
L L L+ N ++PA++
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAM 555
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 74 NASKFTNLRSLDLS-NNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
+ S+ NL LD+S NN T +P L L N L+ + + +S LK+ N
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLN 250
Query: 133 LSGNQLEQFPIQILDIPTLKYLYLGNNSL-NHVPREINKLCK-LHVLSLGGNSL-TDIPD 189
+S NQ PI L + +L+YL L N +P ++ C L L L GN +P
Sbjct: 251 ISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 190 TFG 192
FG
Sbjct: 310 FFG 312
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 53 KKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFPLSTLIARNN 111
+ P NI + + + F +N S + LD+S N ++ ++P+ I + P ++ +
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGS----MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLNHVPREINK 170
+ S+P ++ +L+ L + +LS N+L+ + P + + L + L NN+L+ E+ +
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
Query: 171 L 171
Sbjct: 723 F 723
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++N L LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++N L LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN+L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINK-LCKLH 175
+LP D+ K+ + +LS N L F + L +P + L + +++ L L
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLP 234
L L N L +P L L L +S N+L SLP ++ L L+ L L N+L+TLP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 235 TEIIT 239
++T
Sbjct: 141 PGLLT 145
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++N L LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN+L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINK-LCKLH 175
+LP D+ K+ + +LS N L F + L +P + L + +++ L L
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRCELTKLQVDGTLPVLG 80
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLP 234
L L N L +P L L L +S N+L SLP ++ L L+ L L N+L+TLP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 235 TEIIT 239
++T
Sbjct: 141 PGLLT 145
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++N L LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN+L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINK-LCKLH 175
+LP D+ K+ + +LS N L F + L +P + L + +++ L L
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLP 234
L L N L +P L L L +S N+L SLP ++ L L+ L L N+L+TLP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 235 TEIIT 239
++T
Sbjct: 141 PGLLT 145
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++N L LPA + N L+ L +LLL N L T+P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 119
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN+L +P +N L L
Sbjct: 120 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 176 TLLLQENSLYTIPKGF 191
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINK-LCKLH 175
+LP D+ K+ + +LS N L F + L +P + L + +++ L L
Sbjct: 24 ALPPDLP--KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVDGTLPVLG 80
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLP 234
L L N L +P L L L +S N+L SLP ++ L L+ L L N+L+TLP
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 235 TEIIT 239
++T
Sbjct: 141 PGLLT 145
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGG 181
L L +LS NQL+ P+ +P L L + N L +P + L +L L L G
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISN-LKMLKSLLLHNNKLRTLP 234
N L +P +LE L L++N L LPA + N L+ L +LLL N L T+P
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAES 117
+ TL L HN L P L LD+S NR+T LP
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA------------------- 120
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLH 175
+ L L+ L GN+L+ P +L P L+ L L NN+L +P +N L L
Sbjct: 121 ----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176
Query: 176 VLSLGGNSLTDIPDTF 191
L L NSL IP F
Sbjct: 177 TLLLQENSLYTIPKGF 192
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINK-LCKLH 175
+LP D+ K+ + +LS N L F + L +P + L + +++ L L
Sbjct: 25 ALPPDLP--KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRCELTKLQVDGTLPVLG 81
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLP 234
L L N L +P L L L +S N+L SLP ++ L L+ L L N+L+TLP
Sbjct: 82 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 235 TEIIT 239
++T
Sbjct: 142 PGLLT 146
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 90/217 (41%), Gaps = 20/217 (9%)
Query: 86 LSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN-QLEQ 140
L NRI+H+P +A N L+ L +N+L A + L L+ +LS N QL
Sbjct: 38 LHGNRISHVPAASFRACRN--LTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRS 94
Query: 141 F-PIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQL 197
P + L L+L L + P L L L L N+L +PD TF DL L
Sbjct: 95 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 154
Query: 198 EALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITXXXXXXXXXXXXXXXXX 256
L L N++ S+P + L L LLLH N++ +
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS- 213
Query: 257 XRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDMTYKP 292
LPTE + L+ L L L DNP +V D +P
Sbjct: 214 --ALPTEALAPLRALQYLRLNDNP----WVCDCRARP 244
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 47/180 (26%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITN--FPLSTLIARNN-- 111
N+ +LLL HN+L+F A NLR LDLS+N + L + + + L L+ NN
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKL 171
++ + +DM+ L+ L LS NQ+ +FP++++ ++ NKL
Sbjct: 125 VVVDRNAFEDMAQLQKLY---LSQNQISRFPVELI-------------------KDGNKL 162
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
KL +L L N L +P L+D L+ LPA + N L LHNN L
Sbjct: 163 PKLMLLDLSSNKLKKLP-------------LTD--LQKLPAWVKN-----GLYLHNNPLE 202
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 12/160 (7%)
Query: 84 LDLSNNRITHLPQAITNFPLSTLIARNNL--LTAESLPKDMSNLKNLKVFNLSGNQLEQF 141
L S ++ ++PQ++ ++ ++ NNL L AE P ++NL +L LS N L
Sbjct: 23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNHLNFI 79
Query: 142 PIQ-ILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLE 198
+ + +P L+YL L +N L+ + + + L L VL L N + + + F D+ QL+
Sbjct: 80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 199 ALILSDNQLESLPASI----SNLKMLKSLLLHNNKLRTLP 234
L LS NQ+ P + + L L L L +NKL+ LP
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 90/217 (41%), Gaps = 20/217 (9%)
Query: 86 LSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN-QLEQ 140
L NRI+H+P +A N L+ L +N+L A + L L+ +LS N QL
Sbjct: 39 LHGNRISHVPAASFRACRN--LTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 141 F-PIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQL 197
P + L L+L L + P L L L L N+L +PD TF DL L
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155
Query: 198 EALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITXXXXXXXXXXXXXXXXX 256
L L N++ S+P + L L LLLH N++ +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS- 214
Query: 257 XRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDMTYKP 292
LPTE + L+ L L L DNP +V D +P
Sbjct: 215 --ALPTEALAPLRALQYLRLNDNP----WVCDCRARP 245
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP 188
+ SG L P I T + LYL +N + + P ++L +L L L N LT +P
Sbjct: 21 TVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 189 -DTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEII 238
F L QL L L+DNQL+S+P + NLK L + L NN ++I+
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 55 PENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P L LY N ++ P + T L LDL NN++T LP +
Sbjct: 37 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--------------- 81
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI 168
L L +L+ NQL+ P D + +L +++L NN + +I
Sbjct: 82 --------FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 129
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKL 230
C + G SL +P Q+ L L DNQ+ L P L L L L NN+L
Sbjct: 17 CSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 74
Query: 231 RTLPTEI 237
LP +
Sbjct: 75 TVLPAGV 81
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP 188
+ SG L P I T + LYL +N + + P ++L +L L L N LT +P
Sbjct: 13 TVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 189 -DTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEII 238
F L QL L L+DNQL+S+P + NLK L + L NN ++I+
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 55 PENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P L LY N ++ P + T L LDL NN++T LP +
Sbjct: 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--------------- 73
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI 168
L L +L+ NQL+ P D + +L +++L NN + +I
Sbjct: 74 --------FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKL 230
C + G SL +P Q+ L L DNQ+ L P L L L L NN+L
Sbjct: 9 CSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 231 RTLPTEI 237
LP +
Sbjct: 67 TVLPAGV 73
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNNL 112
P ++ L L N + P S + +L +DLSNNRI+ L Q+ +N L TLI N
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 113 LTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSL 161
L P+ LK+L++ +L GN + P D+ L +L +G N L
Sbjct: 90 LRCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 154 LYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA 212
LYL N VP+E++ L ++ L N ++ + + +F ++ QL LILS N+L +P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 213 -SISNLKMLKSLLLHNNKLRTLP 234
+ LK L+ L LH N + +P
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVP 118
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVP-REINKLCKLH 175
+PK++SN K+L + +LS N++ Q ++ L L L N L +P R + L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 176 VLSLGGNSLTDIPD-TFGDLYQLEALILSDNQL 207
+LSL GN ++ +P+ F DL L L + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 131 FNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP 188
L N+L+ P + D + L L L N + +P + +KL KL +L L N L +P
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 189 D-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
+ F L QL+ L L NQL+S+P I L L+ + LH N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 177 LSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLP 234
L L N L +P F L QL L LS NQ++SLP + L L L LH NKL++LP
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 235 TEI 237
+
Sbjct: 93 NGV 95
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITN--FPLSTLIARNN 111
P + L L N L P K T L L LS N+I LP + + L+ L N
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 112 LLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLN-HVPR 166
L +SLP + L LK L NQL+ P I D + +L+ ++L N + PR
Sbjct: 87 KL--QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP 188
+ SG L P I T + LYL +N + + P ++L +L L L N LT +P
Sbjct: 13 TVDCSGKSLASVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 189 -DTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEII 238
F L QL L L+DNQL+S+P + NL+ L + L NN ++I+
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDIL 122
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 25/116 (21%)
Query: 55 PENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P L LY N ++ P + T L LDL NN++T LP +
Sbjct: 29 PTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV--------------- 73
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI 168
L L +L+ NQL+ P D + +L +++L NN + +I
Sbjct: 74 --------FDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDI 121
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKL 230
C + G SL +P Q+ L L DN++ L P L L L L NN+L
Sbjct: 9 CSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 231 RTLPTEII 238
LP +
Sbjct: 67 TVLPAGVF 74
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 119 PKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLS 178
P L +L+ + L + P L+ L L N L +P I L +L LS
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELS 156
Query: 179 LGG-NSLTDIP------DTFGD---LYQLEALILSDNQLESLPASISNLKMLKSLLLHNN 228
+ LT++P D G+ L L++L L + SLPASI+NL+ LKSL + N+
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216
Query: 229 KLRTLPTEI 237
L L I
Sbjct: 217 PLSALGPAI 225
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 149 PTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLE 208
P L L + L P + +L L ++ L ++PDT LE L L+ N L
Sbjct: 81 PGRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLR 140
Query: 209 SLPASISNLKMLKSLLLHN-NKLRTLPTEIITXXXXXXXX-----XXXXXXXXXXRTLPT 262
+LPASI++L L+ L + +L LP + + R+LP
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 263 EIITLKCLSELSLRDNPL 280
I L+ L L +R++PL
Sbjct: 201 SIANLQNLKSLKIRNSPL 218
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 86/207 (41%), Gaps = 37/207 (17%)
Query: 29 FSYSSLDSETL-ATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDL- 86
F S L T+ A + LP D ++ ++TL L N L P + + LR L +
Sbjct: 101 FRLSHLQHXTIDAAGLXELP--DTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 87 SNNRITHLPQAITNFPLST----LI----ARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
+ +T LP+ + + S L+ R SLP ++NL+N
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN----------- 207
Query: 139 EQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGG-NSLTDIPDTFGDLYQL 197
LK L + N+ L+ + I+ L KL L L G +L + P FG L
Sbjct: 208 ------------LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 198 EALILSD-NQLESLPASISNLKMLKSL 223
+ LIL D + L +LP I L L+ L
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKL 282
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 106 LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHV 164
++ R L +S P L+NL + +LS N + +L+ + L+ L L +N+L +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Query: 165 PREIN---------KLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI 214
+ N L LH+L+L N +IP + F DL++L+ + L N L +LPAS+
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 215 SNLKM-LKSLLLHNNKLRTLPTEII 238
N ++ LKSL L N + ++ ++
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVF 604
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 106 LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHV 164
++ R L +S P L+NL + +LS N + +L+ + L+ L L +N+L +
Sbjct: 465 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 524
Query: 165 PREIN---------KLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI 214
+ N L LH+L+L N +IP + F DL++L+ + L N L +LPAS+
Sbjct: 525 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 584
Query: 215 SNLKM-LKSLLLHNNKLRTLPTEII 238
N ++ LKSL L N + ++ ++
Sbjct: 585 FNNQVSLKSLNLQKNLITSVEKKVF 609
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 106 LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHV 164
++ R L +S P L+NL + +LS N + +L+ + L+ L L +N+L +
Sbjct: 470 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 529
Query: 165 PREIN---------KLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI 214
+ N L LH+L+L N +IP + F DL++L+ + L N L +LPAS+
Sbjct: 530 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 589
Query: 215 SNLKM-LKSLLLHNNKLRTLPTEII 238
N ++ LKSL L N + ++ ++
Sbjct: 590 FNNQVSLKSLNLQKNLITSVEKKVF 614
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 102 PLSTLIARNNLLTAESLPKD---MSNLKNLKVFNLSGNQLEQF-PI-------------- 143
PLS N L ES KD ++NL +L +L+ NQ+E P+
Sbjct: 150 PLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209
Query: 144 QILDIP------TLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQL 197
QI DI L L +GNN + + N L +L L +G N ++DI + DL +L
Sbjct: 210 QITDITPVANXTRLNSLKIGNNKITDLSPLAN-LSQLTWLEIGTNQISDI-NAVKDLTKL 267
Query: 198 EALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEII 238
+ L + NQ+ + ++NL L SL L+NN+L E+I
Sbjct: 268 KXLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDXEVI 307
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ T L SL + NN+IT L L+ L N ++ + KD++ LK L N+
Sbjct: 218 ANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXL---NVGS 274
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDI 187
NQ+ + + ++ L L+L NN L + E I L L L L N +TDI
Sbjct: 275 NQISDISV-LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 104 STLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLN 162
+TLI ++ L + + L LK F + +L P +L D+ L +L L N +
Sbjct: 101 TTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IE 159
Query: 163 HVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKM 219
+P + + L L + G N L +P FG + +L+ L L+ NQL+S+P I L
Sbjct: 160 EMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219
Query: 220 LKSLLLHNN 228
L+ + LH N
Sbjct: 220 LQKIWLHTN 228
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 27/132 (20%)
Query: 77 KFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136
+ L+ + R+TH+P NLLT DM NL +L+ L N
Sbjct: 121 RLHGLKRFRFTTRRLTHIPA--------------NLLT------DMRNLSHLE---LRAN 157
Query: 137 QLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPDT-FGD 193
+E+ P + D + L+ + G+N L +PR I K+ KL L+L N L +PD F
Sbjct: 158 -IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDR 216
Query: 194 LYQLEALILSDN 205
L L+ + L N
Sbjct: 217 LTSLQKIWLHTN 228
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 30/166 (18%)
Query: 80 NLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
NL SL+LSNN+IT + I P ++ L N LT K ++NLKNL L N++
Sbjct: 67 NLTSLNLSNNQITDI-SPIQYLPNVTKLFLNGNKLTD---IKPLANLKNLGWLFLDENKV 122
Query: 139 -----------------EQFPIQ----ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVL 177
E I ++ +P L+ LYLGNN + + +++L KL L
Sbjct: 123 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL 181
Query: 178 SLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP--ASISNLKMLK 221
SL N ++DI G L +L+ L LS N + L A + NL +L+
Sbjct: 182 SLEDNQISDIVPLAG-LTKLQNLYLSKNHISDLRALAGLKNLDVLE 226
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 148 IPTLKY-LYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSD 204
IPT K L+L NN + + P + L L L N LT IP F L QL L L+D
Sbjct: 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90
Query: 205 NQLESLP-ASISNLKMLKSLLLHNN 228
N L+S+P + NLK L + L+NN
Sbjct: 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 38/181 (20%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P+++ +LL+ +NNL D L L +SNN++ LP+ + L + NN L
Sbjct: 110 PQSLKSLLVDNNNLKALSDLPPL---LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL- 165
Query: 115 AESLPKDMSNLK-NLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173
K + +L +L+ NQLE+ P ++ ++P L +Y NNSL +P
Sbjct: 166 -----KKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-------- 211
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
D+P LE+++ +N LE LP + NL L ++ NN L+TL
Sbjct: 212 ------------DLP------LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTL 252
Query: 234 P 234
P
Sbjct: 253 P 253
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 81 LRSLDLSNNRITHLPQAITNFPLSTLIAR-NNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139
L L++SNN++ LP L LIA N+L LP+ NLK ++ N L
Sbjct: 319 LEELNVSNNKLIELPALPPR--LERLIASFNHLAEVPELPQ------NLKQLHVEYNPLR 370
Query: 140 QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDL 194
+FP DIP N+ L VP L +LHV + DIP++ DL
Sbjct: 371 EFP----DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 128 LKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDI 187
L+ N+S N+L + P P L+ L N L VP L +LHV DI
Sbjct: 319 LEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDI 375
Query: 188 PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
P++ DL ++ L +P NLK L + N LR P
Sbjct: 376 PESVEDLRM-------NSHLAEVPELPQNLKQLH---VETNPLREFP 412
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 20/157 (12%)
Query: 81 LRSLDLSNNRITHLPQAITNFP-LSTLIARNNLL-TAESLPKDMSNLKNLKVFNLSGNQL 138
L S+ NN + LP+ + N P L+T+ A NNLL T LP +L+ N+ N L
Sbjct: 217 LESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPP------SLEALNVRDNYL 269
Query: 139 EQFPIQILDIP-TLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQL 197
P ++P +L +L + N + + L L+ S SL D+P + L
Sbjct: 270 TDLP----ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS------L 319
Query: 198 EALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
E L +S+N+L LPA L+ L + H ++ LP
Sbjct: 320 EELNVSNNKLIELPALPPRLERLIASFNHLAEVPELP 356
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 46/176 (26%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
PE I + L N + P A S + LR +DLSNN+I+ L
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------------------- 71
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173
P L++L L GN++ + P K L+ G SL + NK+
Sbjct: 72 ----APDAFQGLRSLNSLVLYGNKITELP---------KSLFEGLFSLQLLLLNANKINX 118
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNN 228
L V D F DL+ L L L DN+L+++ + S L+ ++++ L N
Sbjct: 119 LRV------------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGGNSLTDI- 187
+ + G L + P + + T+ + L N++ +P + KL + L N ++++
Sbjct: 15 IVDCRGKGLTEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 188 PDTFGDLYQLEALILSDNQLESLPASI 214
PD F L L +L+L N++ LP S+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 27/165 (16%)
Query: 79 TNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136
T R LDL NRI L Q +FP L L N+++A P +NL NL+ L N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSN 90
Query: 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLY 195
+L+ P+ + L L L + N + + D F DLY
Sbjct: 91 RLKLIPLGVF----------------------TGLSNLTKLDISENKIVILLDYMFQDLY 128
Query: 196 QLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEIIT 239
L++L + DN L + + S L L+ L L L ++PTE ++
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 46/176 (26%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
PE I + L N + P A S + LR +DLSNN+I+ L
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA------------------ 72
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173
P L++L L GN++ + P K L+ G SL + NK+
Sbjct: 73 -----PDAFQGLRSLNSLVLYGNKITELP---------KSLFEGLFSLQLLLLNANKINC 118
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNN 228
L V D F DL+ L L L DN+L+++ + S L+ ++++ L N
Sbjct: 119 LRV------------DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGGNSLTDI- 187
+ + G L + P + + T+ + L N++ +P + KL + L N ++++
Sbjct: 15 IVDCRGKGLTEIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 188 PDTFGDLYQLEALILSDNQLESLPASI 214
PD F L L +L+L N++ LP S+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 20/147 (13%)
Query: 67 NLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLK 126
NLS PDN + L+++ N + LP+ + L L A +N L+ +LP+ ++LK
Sbjct: 70 NLSSLPDNLPP--QITVLEITQNALISLPELPAS--LEYLDACDNRLS--TLPELPASLK 123
Query: 127 NLKVFNLSGNQLEQFPIQILDIPTL-KYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLT 185
+L V N NQL P ++P L +Y+ NN L +P L VLS+ N LT
Sbjct: 124 HLDVDN---NQLTXLP----ELPALLEYINADNNQLTXLPE---LPTSLEVLSVRNNQLT 173
Query: 186 DIPDTFGDLYQLEALILSDNQLESLPA 212
+P+ LEAL +S N LESLPA
Sbjct: 174 FLPEL---PESLEALDVSTNLLESLPA 197
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 36 SETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF-TNLRSLDLSNNRITHL 94
S+ L +IE+ +N P +++TL L+ N L+ P A ++ + LR L L NN I +
Sbjct: 67 SKNLVRKIEV---GAFNGLP-SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Query: 95 PQ-AITNFPLSTLIARNNLLTAESLPKD-MSNLKNLKVFNLSGNQLEQFPIQILDIPTLK 152
P A P + L E + + L NL+ NL L+ P + + L+
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLE 181
Query: 153 YLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESL 210
L L N L+ + P L L L L + I + F DL LE L LS N L SL
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 211 P 211
P
Sbjct: 242 P 242
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 177 LSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLP 234
L+L NS+ I DTF L LE L LS N + + + + L L +L L +N+L T+P
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 235 TE 236
T+
Sbjct: 100 TQ 101
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 103 LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN 162
L TL N L + + + + +++ V NLS N L + L P +K L L NN +
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM 463
Query: 163 HVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDN 205
+P+++ L L L++ N L +PD F L L+ + L DN
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 86/173 (49%), Gaps = 25/173 (14%)
Query: 80 NLRSLDLSNNRITHL--PQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
N++ L +S+ H+ P + ++F T + + +S+ + S LK L+ L N
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSF---TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388
Query: 138 LEQF---PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH----VLSLGGNSLTDIPDT 190
L+ F + ++ +L+ L + NSLN ++ C VL+L N LT
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLN--SHAYDRTCAWAESILVLNLSSNMLT----- 441
Query: 191 FGDLYQ-----LEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEII 238
G +++ ++ L L +N++ S+P +++L+ L+ L + +N+L+++P +
Sbjct: 442 -GSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVF 493
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 173 KLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
K+ VL L N + IP L L+ L ++ NQL+S+P + L L+ + LH+N
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 36 SETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF-TNLRSLDLSNNRITHL 94
S+ L +IE+ +N P +++TL L+ N L+ P A ++ + LR L L NN I +
Sbjct: 67 SKNLVRKIEV---GAFNGLP-SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESI 122
Query: 95 PQ-AITNFPLSTLIARNNLLTAESLPKD-MSNLKNLKVFNLSGNQLEQFPIQILDIPTLK 152
P A P + L E + + L NL+ NL L+ P + + L+
Sbjct: 123 PSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLE 181
Query: 153 YLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESL 210
L L N L+ + P L L L L + I + F DL LE L LS N L SL
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 211 P 211
P
Sbjct: 242 P 242
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 177 LSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLP 234
L+L NS+ I DTF L LE L LS N + + + + L L +L L +N+L T+P
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 235 TE 236
T+
Sbjct: 100 TQ 101
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 11/191 (5%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQ-AITNFPLSTL----IA 108
P + L L N L P K T L L LS+N ++ + ++F ++L ++
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 109 RNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI 168
N ++T S + L++L + + Q+ +F + L + L YL + + I
Sbjct: 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGI 145
Query: 169 -NKLCKLHVLSLGGNSLTD--IPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLL 224
N L L VL + GNS + +PD F +L L L LS QLE L P + ++L L+ L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 225 LHNNKLRTLPT 235
+ +N +L T
Sbjct: 206 MSHNNFFSLDT 216
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 127 NLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGGNSLT 185
+L+V S LE+ P + P L L NN + + + L LH L L N ++
Sbjct: 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 186 DI-PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
I P F L +LE L LS NQL+ LP + K L+ L +H N++
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI 133
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 56 ENIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
+N+ TL+L +N +S P + L L LS N++ LP+ + L L N +T
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT-LQELRVHENEIT 134
Query: 115 AESLPKDMSN-LKNLKVFNLSGNQLEQFPIQ---ILDIPTLKYLYLGNNSLNHVPREIN- 169
+ K + N L + V L N L+ I+ + L Y+ + + ++ +P+ +
Sbjct: 135 --KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 170 KLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHN 227
L +LH L GN +T + + L L L LS N + ++ S++N L+ L L+N
Sbjct: 193 SLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 228 NKLRTLP 234
NKL +P
Sbjct: 250 NKLVKVP 256
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 127 NLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKLHVLSLGGNSLT 185
+L+V S LE+ P + P L L NN + + + L LH L L N ++
Sbjct: 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 186 DI-PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
I P F L +LE L LS NQL+ LP + K L+ L +H N++
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI 133
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 56 ENIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
+N+ TL+L +N +S P + L L LS N++ LP+ + L L N +T
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT-LQELRVHENEIT 134
Query: 115 AESLPKDMSN-LKNLKVFNLSGNQLEQFPIQ---ILDIPTLKYLYLGNNSLNHVPREIN- 169
+ K + N L + V L N L+ I+ + L Y+ + + ++ +P+ +
Sbjct: 135 --KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 170 KLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHN 227
L +LH L GN +T + + L L L LS N + ++ S++N L+ L L+N
Sbjct: 193 SLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 228 NKLRTLP 234
NKL +P
Sbjct: 250 NKLVKVP 256
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 100/206 (48%), Gaps = 30/206 (14%)
Query: 44 ELLPNNDYN-KKPENIDTLLLYHNNLSFFPDNASKF-TNLRSLDLSNNRITHLPQAITNF 101
EL +N Y K ID L N+++ D KF L++LDL +N +T + I +
Sbjct: 328 ELYSSNFYGLPKVAYID---LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HFIPSI 383
Query: 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ--ILDIPTLKYLYLGNN 159
P ++ N L+T LPK NL + +LS N+LE I +L +P L+ L L N
Sbjct: 384 P-DIFLSGNKLVT---LPK--INL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436
Query: 160 -----SLNHVPREINKLCKLHVLSLGGNSL-----TDI-PDTFGDLYQLEALILSDNQLE 208
S + P E L +L LG N L T++ D F L L+ L L+ N L
Sbjct: 437 RFSSCSGDQTPSENPSLEQLF---LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493
Query: 209 SLPASI-SNLKMLKSLLLHNNKLRTL 233
SLP + S+L L+ L L++N+L L
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVL 519
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 125 LKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGN 182
LK+LKV NL+ N++ + + + L+ L L N L + L K+ + L N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 183 SLTDIPD-TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
+ I D TF L +L+ L L DN L +I + + + L NKL TLP
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNKLVTLP 397
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 73 DNASKFTNLRSLDLSNNRITHL---PQAITNF-PLSTLIARNNLLTAESLPKDMSNLKNL 128
+N T L +L L N++ L + T L L N ++ + D S K+L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP 188
N+S N L + L P +K L L +N + +P+++ KL L L++ N L +P
Sbjct: 402 LSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460
Query: 189 D-TFGDLYQLEALILSDN 205
D F L L+ + L N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 90/167 (53%), Gaps = 15/167 (8%)
Query: 80 NLRSLDLSNNRITHL--PQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
N+++ +S R+ H+ P I+ P L NNLLT +++ ++ +L L+ L NQ
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKIS--PFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQ 359
Query: 138 LEQFPIQILDIPT----LKYLYLGNNSLNHVPREINKLCKLHVLSL--GGNSLTDIPDTF 191
L++ +I ++ T L+ L + NS+++ ++ + +LSL N LTD F
Sbjct: 360 LKELS-KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT--IF 416
Query: 192 GDLY-QLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEI 237
L +++ L L N+++S+P + L+ L+ L + +N+L+++P I
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD 204
++ +P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS
Sbjct: 127 LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSK 184
Query: 205 NQLESLPASISNLKMLKSLLL 225
N + L A ++ LK L L L
Sbjct: 185 NHISDLRA-LAGLKNLDVLEL 204
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 132 NLSGNQLEQFPIQILDIPT---LKYLYLGNNSLNHVPRE--INKLCKLHVLSLGGNSLTD 186
+SG QL+ + D P ++ +Y+G N+L P E + K KL L N L
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEG 344
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNL-KMLKSLLLHNNKLRTLP 234
FG +L +L L+ NQ+ +PA+ + +++L +NKL+ +P
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP 393
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 21/186 (11%)
Query: 20 KTVSIKT-LDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SK 77
K+VS+ + +DFSY+ + S L P K N+ ++ L +N +S FP S
Sbjct: 399 KSVSVXSAIDFSYNEIGSVDGKNFDPLDPTP---FKGINVSSINLSNNQISKFPKELFST 455
Query: 78 FTNLRSLDLSNNRITHLPQ-----AITNFP----LSTLIARNNLLTAESLPKDMSNLKNL 128
+ L S++L N +T +P+ NF L+++ R N LT S + L L
Sbjct: 456 GSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515
Query: 129 KVFNLSGNQLEQFPIQILDIPTLKYLYL-------GNNSLNHVPREINKLCKLHVLSLGG 181
+LS N +FP Q L+ TLK + GN +L P I L L +G
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575
Query: 182 NSLTDI 187
N + +
Sbjct: 576 NDIRKV 581
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD 204
++ +P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSK 187
Query: 205 NQLESLPASISNLKMLKSLLL 225
N + L A ++ LK L L L
Sbjct: 188 NHISDLRA-LAGLKNLDVLEL 207
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 148 IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQL 207
+P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS N +
Sbjct: 128 LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNHI 185
Query: 208 ESLP--ASISNLKMLK 221
L A + NL +L+
Sbjct: 186 SDLRALAGLKNLDVLE 201
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD 204
++ +P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS
Sbjct: 128 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSK 185
Query: 205 NQLESLP--ASISNLKMLK 221
N + L A + NL +L+
Sbjct: 186 NHISDLRALAGLKNLDVLE 204
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD 204
++ +P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS
Sbjct: 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSK 187
Query: 205 NQLESLPASISNLKMLKSLLL 225
N + L A ++ LK L L L
Sbjct: 188 NHISDLRA-LAGLKNLDVLEL 207
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 18/162 (11%)
Query: 74 NASKFTNLRSLDLSNNRITH-----LPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNL 128
N K T++ +LDLS N AI + +LI N+ S +N K+
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH--TNFKDP 264
Query: 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP 188
F G LE ++ D+ K L + +H L L+L N + I
Sbjct: 265 DNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSH-------FTDLEQLTLAQNEINKID 315
Query: 189 D-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
D F L L+ L L NQL+S+P I L L+ + LH N
Sbjct: 316 DNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 148 IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQL 207
+P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS N +
Sbjct: 151 LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNHI 208
Query: 208 ESLP--ASISNLKMLK 221
L A + NL +L+
Sbjct: 209 SDLRALAGLKNLDVLE 224
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 148 IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQL 207
+P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS N +
Sbjct: 151 LPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNHI 208
Query: 208 ESLP--ASISNLKMLK 221
L A + NL +L+
Sbjct: 209 SDLRALAGLKNLDVLE 224
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD 204
++ +P L+ LYLGNN + + +++L KL LSL N ++DI G L +L+ L LS
Sbjct: 148 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSK 205
Query: 205 NQLESLP--ASISNLKMLK 221
N + L A + NL +L+
Sbjct: 206 NHISDLRALAGLKNLDVLE 224
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 80 NLRSLDLSNNRITHLPQ-AITNFPLSTL----IARNNLLTAESLPKDMSNLKNLKVFNLS 134
+L LDLS N ++ + ++F ++L ++ N ++T S + L++L + +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 135 GNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTD--IPDTF 191
Q+ +F + L + L YL + + I N L L VL + GNS + +PD F
Sbjct: 408 LKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 192 GDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPT 235
+L L L LS QLE L P + ++L L+ L + +N +L T
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 126 KNLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLNHV--PREINKLCKLHVLSLGGN 182
+NL + L N L + L+ L L +N+ V P L LH L L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 183 SLTDI-PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLP 234
L ++ P F L L+ L L DN L++LP + +L L L LH N++ ++P
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVP 168
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVL------SLGGNSLTDIPDTFGDLYQLE 198
+L+ LK Y L+ +++ LC L L L N L +P L LE
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 489
Query: 199 ALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
L SDN LE++ ++NL L+ LLL NN+L+
Sbjct: 490 VLQASDNALENVDG-VANLPRLQELLLCNNRLQ 521
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 45 LLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-L 103
LL N+ + ++ L L H +L+ + + + LDLS+NR+ LP A+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCL 488
Query: 104 STLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ-FPIQ-ILDIPTLKYLYLGNNSL 161
L A +N L E++ ++NL L+ L N+L+Q IQ ++ P L L L NSL
Sbjct: 489 EVLQASDNAL--ENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 63 LYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKD 121
L HN L P + L L S+N + ++ + N P L L+ NN L + +
Sbjct: 470 LSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQP 528
Query: 122 MSNLKNLKVFNLSGNQLEQ 140
+ + L + NL GN L Q
Sbjct: 529 LVSCPRLVLLNLQGNSLCQ 547
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVL------SLGGNSLTDIPDTFGDLYQLE 198
+L+ LK Y L+ +++ LC L L L N L +P L LE
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 489
Query: 199 ALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
L SDN LE++ ++NL L+ LLL NN+L+
Sbjct: 490 VLQASDNALENVDG-VANLPRLQELLLCNNRLQ 521
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 45 LLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-L 103
LL N+ + ++ L L H +L+ + + + LDLS+NR+ LP A+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCL 488
Query: 104 STLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ-FPIQ-ILDIPTLKYLYLGNNSL 161
L A +N L E++ ++NL L+ L N+L+Q IQ ++ P L L L NSL
Sbjct: 489 EVLQASDNAL--ENV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 63 LYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKD 121
L HN L P + L L S+N + ++ + N P L L+ NN L + +
Sbjct: 470 LSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQQSAAIQP 528
Query: 122 MSNLKNLKVFNLSGNQLEQ 140
+ + L + NL GN L Q
Sbjct: 529 LVSCPRLVLLNLQGNSLCQ 547
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 107 IARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR 166
++ N ++T S + L++L + + Q+ +F + L + L YL + +
Sbjct: 404 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFN 462
Query: 167 EI-NKLCKLHVLSLGGNSLTD--IPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKS 222
I N L L VL + GNS + +PD F +L L L LS QLE L P + ++L L+
Sbjct: 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 223 LLLHNNKLRTLPT 235
L + +N +L T
Sbjct: 523 LNMSHNNFFSLDT 535
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF 78
F T+S+K LD S++ + T+++ L E ++ L H+NL + S F
Sbjct: 394 FGTISLKYLDLSFNGVI--TMSSNFLGL---------EQLEHLDFQHSNLKQMSE-FSVF 441
Query: 79 TNLRSLDLSNNRITHLPQAITNF-----PLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133
+LR+L + TH A L L N LP + L+NL +L
Sbjct: 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 134 SGNQLEQF-PIQILDIPTLKYLYLGNNSL 161
S QLEQ P + +L+ L + +N+
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 160 SLNHVPREINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPASI-SNL 217
SL VP I VL L N +T + P F L QL L L+ NQL +LP + L
Sbjct: 30 SLASVPAGIPT--TTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 218 KMLKSLLLHNNKLRTLPTEI 237
L L LH N+L+++P +
Sbjct: 88 TKLTHLALHINQLKSIPMGV 107
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 132 NLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DT 190
N L P I + +LY+ N P + L +L L+L N LT +P
Sbjct: 25 NCQERSLASVPAGIPTTTQVLHLYI-NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV 83
Query: 191 FGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
F L +L L L NQL+S+P + NLK L + L NN
Sbjct: 84 FDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD 204
++ +P L+ LYLGNN + + +++L KL LSL N ++DI L +L+ L LS
Sbjct: 125 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIV-PLACLTKLQNLYLSK 182
Query: 205 NQLESLPA--SISNLKMLK 221
N + L A + NL +L+
Sbjct: 183 NHISDLRALCGLKNLDVLE 201
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 32/216 (14%)
Query: 37 ETLATQIELLPNNDYNKKPENIDTLLLYHNNLSF--FPDNASKFTNLRSLDLSNNRITH- 93
+T + +E +P ++ EN+++L L N++S FP + NL+ LD NN I +
Sbjct: 111 QTGISNLEFIPVHNL----ENLESLYLGSNHISSIKFPKDFPA-RNLKVLDFQNNAIHYI 165
Query: 94 -------LPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL 146
L QAI LS NN+ E D + ++L N G L
Sbjct: 166 SREDMRSLEQAIN---LSLNFNGNNVKGIELGAFDSTIFQSL---NFGGTPNLSVIFNGL 219
Query: 147 DIPTLKYLYLGNNSLNHVPRE------INKLCKLHV--LSLGGNSLTDIPDT-FGDLYQL 197
T + L+LG + + E + LC++ V L+L + +DI T F QL
Sbjct: 220 QNSTTQSLWLG--TFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQL 277
Query: 198 EALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
+ L L+ L+ LP+ + L +LK L+L N L
Sbjct: 278 QELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQL 313
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 145 ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD 204
++ +P L+ LYLGNN + + +++L KL LSL N + I L +L+ L LS
Sbjct: 128 LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQIRRIV-PLARLTKLQNLYLSK 185
Query: 205 NQLESLPA--SISNLKMLK 221
N + L A + NL +L+
Sbjct: 186 NHISDLRALRGLKNLDVLE 204
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 30/193 (15%)
Query: 65 HNNLSFFPDNAS--KFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDM 122
+NNL FP +AS K L LD +N++ HL TN L+ L N + E +P+D
Sbjct: 557 YNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI--EEIPEDF 614
Query: 123 SNLKN-LKVFNLSGNQLEQFPIQILDIPTLKYLYLGN------NSLNHVPREIN------ 169
+ ++ S N+L+ P +I K +Y+ N + R I+
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIP----NIFNAKSVYVXGSVDFSYNKIGSEGRNISCSXDDY 670
Query: 170 KLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLP--------ASISNLKML 220
K ++L N + P + F + +ILS+N S+P + N +L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGNYKNTYLL 730
Query: 221 KSLLLHNNKLRTL 233
++ L NKL +L
Sbjct: 731 TTIDLRFNKLTSL 743
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 47/197 (23%)
Query: 26 TLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSL 84
++DFSY+ + SE +DY K N T+ L +N + FP + + + ++
Sbjct: 648 SVDFSYNKIGSEGRNISCSX---DDY--KGINASTVTLSYNEIQKFPTELFATGSPISTI 702
Query: 85 DLSNNRITHLPQAI---------TNFPLSTLIARNNLLT-------AESLP----KDMS- 123
LSNN T +P+ + L+T+ R N LT A +LP D+S
Sbjct: 703 ILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSY 762
Query: 124 -----------NLKNLKVFNL------SGNQ-LEQFPIQILDIPTLKYLYLGNNSLNHVP 165
N LK F + GN+ L Q+P I P+L L +G+N + V
Sbjct: 763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822
Query: 166 REINKLCKLHVLSLGGN 182
++ +L++L + N
Sbjct: 823 EKLTP--QLYILDIADN 837
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 81 LRSLDLSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136
++SLDLSNNRIT++ Q N + ++ N + T E S+L +L+ +LS N
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQ-ALVLTSNGINTIEE--DSFSSLGSLEHLDLSYN 84
Query: 137 QLEQF------PIQILDIPTL---KYLYLGNNSLNHVPREINKLCKLHVLSLGG-NSLTD 186
L P+ L L Y LG SL + L KL +L +G ++ T
Sbjct: 85 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL------FSHLTKLQILRVGNMDTFTK 138
Query: 187 IP-DTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLH 226
I F L LE L + + L+S P S+ +++ + L+LH
Sbjct: 139 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 180
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 41/224 (18%)
Query: 19 FKTVSIKTLDFSYSSLDSETLA---------TQIE-LLPNNDYNKKPENIDTLLLYHNNL 68
FK SI TLD S + E++A T+I+ L+ +N YN T +N
Sbjct: 209 FKNTSITTLDLSGNGF-KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNL 128
+F AS +++ DLS ++I L +++ S+ +L
Sbjct: 268 TFKGLEAS---GVKTCDLSKSKIFALLKSV-----------------------FSHFTDL 301
Query: 129 KVFNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTD 186
+ L+ N++ + + L L L N L + R L KL VL L N +
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Query: 187 IPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
+ D +F L L+ L L NQL+S+P I L L+ + LH N
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 81 LRSLDLSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136
++SLDLSNNRIT++ Q N + ++ N + T E S+L +L+ +LS N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQ-ALVLTSNGINTIE--EDSFSSLGSLEHLDLSYN 110
Query: 137 QLEQF---------PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGG-NSLTD 186
L + L++ Y LG SL + L KL +L +G ++ T
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL------FSHLTKLQILRVGNMDTFTK 164
Query: 187 IP-DTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLH 226
I F L LE L + + L+S P S+ +++ + L+LH
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPK--DM 122
SFF F L+ LDLS I + Q++++ LSTLI N + + +L +
Sbjct: 49 SFF-----SFPELQVLDLSRCEIQTIEDGAYQSLSH--LSTLILTGNPIQSLALGAFSGL 101
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLG 180
S+L+ L + LE FPI L TLK L + +N + +P + L L L L
Sbjct: 102 SSLQKLVALETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 181 GNSLTDI-----------------------------PDTFGDLYQLEALILSDNQLESLP 211
N + I P F ++ +L+ L L NQL+S+P
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 218
Query: 212 ASI-SNLKMLKSLLLHNN 228
I L L+ + LH N
Sbjct: 219 DGIFDRLTSLQKIWLHTN 236
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 142 PIQILD-----IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQ 196
PI+ +D + K+L L N++ + ++ + L +LSLG N + I +
Sbjct: 37 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADT 95
Query: 197 LEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
LE L +S NQ+ SL + I L L+ L + NNK+
Sbjct: 96 LEELWISYNQIASL-SGIEKLVNLRVLYMSNNKI 128
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPK--DM 122
SFF F L+ LDLS I + Q++++ LSTLI N + + +L +
Sbjct: 49 SFF-----SFPELQVLDLSRCEIQTIEDGAYQSLSH--LSTLILTGNPIQSLALGAFSGL 101
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLG 180
S+L+ L + LE FPI L TLK L + +N + +P + L L L L
Sbjct: 102 SSLQKLVAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 181 GNSLTDI-----------------------------PDTFGDLYQLEALILSDNQLESLP 211
N + I P F ++ +L+ L L NQL+S+P
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 218
Query: 212 ASI-SNLKMLKSLLLHNN 228
I L L+ + LH N
Sbjct: 219 DGIFDRLTSLQKIWLHTN 236
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPK--DM 122
SFF F L+ LDLS I + Q++++ LSTLI N + + +L +
Sbjct: 48 SFF-----SFPELQVLDLSRCEIQTIEDGAYQSLSH--LSTLILTGNPIQSLALGAFSGL 100
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLG 180
S+L+ L + LE FPI L TLK L + +N + +P + L L L L
Sbjct: 101 SSLQKLVAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 181 GNSLTDI-----------------------------PDTFGDLYQLEALILSDNQLESLP 211
N + I P F ++ +L+ L L NQL+S+P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 217
Query: 212 ASI-SNLKMLKSLLLHNN 228
I L L+ + LH N
Sbjct: 218 DGIFDRLTSLQKIWLHTN 235
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 142 PIQILD-----IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQ 196
PI+ +D + K+L L N++ + ++ + L +LSLG N + I +
Sbjct: 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94
Query: 197 LEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
LE L +S NQ+ SL + I L L+ L + NNK+
Sbjct: 95 LEELWISYNQIASL-SGIEKLVNLRVLYMSNNKI 127
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPK--DM 122
SFF F L+ LDLS I + Q++++ LSTLI N + + +L +
Sbjct: 48 SFF-----SFPELQVLDLSRCEIQTIEDGAYQSLSH--LSTLILTGNPIQSLALGAFSGL 100
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLG 180
S+L+ L + LE FPI L TLK L + +N + +P + L L L L
Sbjct: 101 SSLQKLVAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 181 GNSLTDI-----------------------------PDTFGDLYQLEALILSDNQLESLP 211
N + I P F ++ +L+ L L NQL+S+P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 217
Query: 212 ASI-SNLKMLKSLLLHNN 228
I L L+ + LH N
Sbjct: 218 DGIFDRLTSLQKIWLHTN 235
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 48/198 (24%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLP----QAITNFPLSTLIARNNLLTAESLPK--DM 122
SFF F L+ LDLS I + Q++++ LSTLI N + + +L +
Sbjct: 47 SFF-----SFPELQVLDLSRCEIQTIEDGAYQSLSH--LSTLILTGNPIQSLALGAFSGL 99
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLG 180
S+L+ L + LE FPI L TLK L + +N + +P + L L L L
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 181 GNSLTDI-----------------------------PDTFGDLYQLEALILSDNQLESLP 211
N + I P F ++ +L+ L L NQL+S+P
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 216
Query: 212 ASI-SNLKMLKSLLLHNN 228
I L L+ + LH N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 148 IPTLKYLYLGNNSL--NHVPREINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSD 204
+ +L+ L + NS N +P +L L L L L + P F L L+ L ++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 205 NQLESLPASI-SNLKMLKSLLLHNN 228
NQL+S+P I L L+ + LH N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 122 MSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGG 181
++ L NL+V L NQ+ + + L+YL +GNN +N + N L KL L
Sbjct: 131 LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNNQVNDLTPLAN-LSKLTTLRADD 188
Query: 182 NSLTDIPDTFGDLYQLEALILSDNQLESLP--ASISNL 217
N ++DI L L + L DNQ+ + A++SNL
Sbjct: 189 NKISDI-SPLASLPNLIEVHLKDNQISDVSPLANLSNL 225
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 81 LRSLDLSNNRITHLP-------QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133
L+ LD NN I +L Q TN L+ + N++ E D + ++L N
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLN--LNGNDIAGIEPGAFDSAVFQSL---NF 209
Query: 134 SGNQLEQFPIQILDIPTLKYLYLGN----NSLNHVPREINKLCKLHV--LSLGGNSLTDI 187
G Q + L T++ L+LG + + P LC++ V ++L + +I
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269
Query: 188 P-DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
+TF L+ L L+ L LP+ + L LK L+L NK L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL 316
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 63 LYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLTAESLPK 120
L +LS P + L+ L LS N+ +L Q + +NFP L+ L + N E
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344
Query: 121 DMSNLKNLKVFNLSGNQLEQFP---IQILDIPTLKYLYLGNNSLNHVPREINKLC-KLHV 176
+ NL+NL+ +LS + +E +Q+ ++ L+ L L N + E K C +L +
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 177 LSLGGNSL--TDIPDTFGDLYQLEALILSDNQLE 208
L L L D F +L+ L+ L LS + L+
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 103 LSTLI-ARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSL 161
L TL+ ++N+L + + + + LKNL ++S N P +++L L + +
Sbjct: 389 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 448
Query: 162 NHVPREINKLCKLHVLSLGGNSLTDIPDTFG-DLYQLEALILSDNQLESLPASISNLKML 220
V I + L VL + N+L D+F L +L+ L +S N+L++LP + S +L
Sbjct: 449 RVVKTCIPQ--TLEVLDVSNNNL----DSFSLFLPRLQELYISRNKLKTLPDA-SLFPVL 501
Query: 221 KSLLLHNNKLRTLPTEII 238
+ + +N+L+++P I
Sbjct: 502 LVMKIASNQLKSVPDGIF 519
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 150 TLKYLYLGNNSLNHVPREINKLCK-LHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207
+K L L N + ++ + C L VL L + + I D F L LE L LSDN L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 208 ESLPAS-ISNLKMLKSLLLHNNKLRTL 233
SL +S L LK L L N +TL
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTL 139
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 103 LSTLI-ARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSL 161
L TL+ ++N+L + + + + LKNL ++S N P +++L L + +
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422
Query: 162 NHVPREINKLCKLHVLSLGGNSLTDIPDTFG-DLYQLEALILSDNQLESLPASISNLKML 220
V I + L VL + N+L D+F L +L+ L +S N+L++LP + S +L
Sbjct: 423 RVVKTCIPQ--TLEVLDVSNNNL----DSFSLFLPRLQELYISRNKLKTLPDA-SLFPVL 475
Query: 221 KSLLLHNNKLRTLPTEII 238
+ + N+L+++P I
Sbjct: 476 LVMKISRNQLKSVPDGIF 493
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 150 TLKYLYLGNNSLNHVPREINKLCK-LHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207
+K L L N + ++ + C L VL L + + I D F L LE L LSDN L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 208 ESLPAS-ISNLKMLKSLLLHNNKLRTL 233
SL +S L LK L L N +TL
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTL 113
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 40/192 (20%)
Query: 46 LPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLS 104
LP ++ P+ + TL + +NNL D+ T+L++L LS+NR+TH+
Sbjct: 132 LPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------- 180
Query: 105 TLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV 164
D+S + +L N+S N L I I ++ L +NS+N V
Sbjct: 181 ----------------DLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVV 220
Query: 165 PREINKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESLPAS-ISNLKMLK 221
+N +L +L L N+LTD + L +++ LS N+LE + ++ L+
Sbjct: 221 RGPVN--VELTILKLQHNNLTDTAWLLNYPGLVEVD---LSYNELEKIMYHPFVKMQRLE 275
Query: 222 SLLLHNNKLRTL 233
L + NN+L L
Sbjct: 276 RLYISNNRLVAL 287
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 25/123 (20%)
Query: 114 TAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIP-TLKYLYLGNNSLNHVPREINKL 171
T LP + + + +++ NL+ Q+E+ T++ LY+G N++ ++P
Sbjct: 56 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------ 109
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKL 230
P F ++ L L+L N L SLP I N L +L + NN L
Sbjct: 110 ----------------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153
Query: 231 RTL 233
+
Sbjct: 154 ERI 156
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 125 LKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSL 184
++ L+ +S N+L + IPTLK L L +N L HV R + +L L L NS+
Sbjct: 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330
Query: 185 TDIPDTFGDLYQLEALILSDNQLE--SLPASISNL 217
+ + L+ L LS N + SL A N+
Sbjct: 331 VTL--KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 363
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 32/217 (14%)
Query: 36 SETLATQIELLPNNDYNKKPENIDTLLLYHNNLSF--FPDNASKFTNLRSLDLSNNRITH 93
++T + +E +P ++ EN+++L L N++S P+N NL+ LD NN I +
Sbjct: 112 TQTGISNLEFIPVHNL----ENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIHY 166
Query: 94 LPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNL-------KVFN--LSGNQLEQFPI- 143
+ + TN +L NL SL + +++K + K+F G L F I
Sbjct: 167 ISRKDTN----SLEQATNL----SLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIF 218
Query: 144 QILDIPTLKYLYLGN----NSLNHVPREINKLCKLHV--LSLGGNSLTDIPD-TFGDLYQ 196
+ L TL+ L+LG + LC + V ++L + +D+ TF +
Sbjct: 219 KGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTR 278
Query: 197 LEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
++ L L+ L LP+ I + LK L+L+ N L
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQL 315
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 63/180 (35%)
Query: 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNN---DYNKKPENIDTLLLYHNNLSFFPDNA 75
K + K D S +LD + L + +L+ N N++ TL + N+
Sbjct: 117 LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENI------- 169
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
L SL+LSNNR+ L +S+++ + NLK+ NLSG
Sbjct: 170 ---PELLSLNLSNNRLYRLDD------MSSIVQK---------------APNLKILNLSG 205
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKL--CKLHVLSLGGNSLTDIPDTFGD 193
N+L+ RE++K+ KL L L GNSL+ DTF D
Sbjct: 206 NELKS------------------------ERELDKIKGLKLEELWLDGNSLS---DTFRD 238
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLI------ARNNLLTAESLPKDM 122
SF P + S T+L +L ++ L +FP+ LI +N + + LP
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLE----SFPIGQLITLKKLNVAHNFIHSCKLPAYF 149
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLK-------YLYLGNNSLNHVPREINKLCKLH 175
SNL NL +LS N ++ I + D+ L+ L + N ++ + + + KLH
Sbjct: 150 SNLTNLVHVDLSYNYIQ--TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207
Query: 176 VLSLGGN 182
L+L GN
Sbjct: 208 ELTLRGN 214
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 40/192 (20%)
Query: 46 LPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLS 104
LP ++ P+ + TL + +NNL D+ T+L++L LS+NR+TH+
Sbjct: 138 LPRGIFHNTPK-LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---------- 186
Query: 105 TLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV 164
D+S + +L N+S N L I I ++ L +NS+N V
Sbjct: 187 ----------------DLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVV 226
Query: 165 PREINKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESLPAS-ISNLKMLK 221
+N +L +L L N+LTD + L +++ LS N+LE + ++ L+
Sbjct: 227 RGPVN--VELTILKLQHNNLTDTAWLLNYPGLVEVD---LSYNELEKIMYHPFVKMQRLE 281
Query: 222 SLLLHNNKLRTL 233
L + NN+L L
Sbjct: 282 RLYISNNRLVAL 293
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 25/123 (20%)
Query: 114 TAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIP-TLKYLYLGNNSLNHVPREINKL 171
T LP + + + +++ NL+ Q+E+ T++ LY+G N++ ++P
Sbjct: 62 TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------ 115
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKL 230
P F ++ L L+L N L SLP I N L +L + NN L
Sbjct: 116 ----------------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 231 RTL 233
+
Sbjct: 160 ERI 162
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 125 LKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSL 184
++ L+ +S N+L + IPTLK L L +N L HV R + +L L L NS+
Sbjct: 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336
Query: 185 TDIPDTFGDLYQLEALILSDNQLE--SLPASISNL 217
+ + L+ L LS N + SL A N+
Sbjct: 337 VTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNV 369
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLI------ARNNLLTAESLPKDM 122
SF P + S T+L +L ++ L +FP+ LI +N + + LP
Sbjct: 89 SFSPGSFSGLTSLENLVAVETKLASLE----SFPIGQLITLKKLNVAHNFIHSCKLPAYF 144
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLK-------YLYLGNNSLNHVPREINKLCKLH 175
SNL NL +LS N ++ I + D+ L+ L + N ++ + + + KLH
Sbjct: 145 SNLTNLVHVDLSYNYIQ--TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 202
Query: 176 VLSLGGN 182
L+L GN
Sbjct: 203 ELTLRGN 209
>pdb|3OZB|A Chain A, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|B Chain B, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|C Chain C, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|D Chain D, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|E Chain E, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
pdb|3OZB|F Chain F, Crystal Structure Of 5'-Methylthioinosine Phosphorylase
From Psedomonas Aeruginosa In Complex With Hypoxanthine
Length = 259
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 315 LPQNLVQYLESAHHCVNPKCKGVFFDNRIEHIKFVDFCGKYRIPLLQYLCSS 366
+P L+ Y H +F IEH+ +DF Y PL Q L +
Sbjct: 115 VPHQLIDYTSGREH--------TYFAGDIEHVTHIDFSHPYDEPLRQRLIEA 158
>pdb|2XVN|A Chain A, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|B Chain B, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|C Chain C, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
Length = 309
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 154 LYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPAS 213
LY+G + + L V SL + PDTFG + EA +NQ++ P +
Sbjct: 241 LYVGLPASETAANQGYYLTPDEVESLVSTYMDRYPDTFGGIMLWEATASENNQIDGAPYA 300
Query: 214 ISNLKMLKSLLLH 226
+K +LLH
Sbjct: 301 ----DHMKDILLH 309
>pdb|2XUC|A Chain A, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|B Chain B, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|C Chain C, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XVP|A Chain A, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XVP|B Chain B, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XTK|A Chain A, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
pdb|2XTK|B Chain B, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
Length = 310
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 154 LYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPAS 213
LY+G + + L V SL + PDTFG + EA +NQ++ P +
Sbjct: 242 LYVGLPASETAANQGYYLTPDEVESLVSTYMDRYPDTFGGIMLWEATASENNQIDGAPYA 301
Query: 214 ISNLKMLKSLLLH 226
+K +LLH
Sbjct: 302 ----DHMKDILLH 310
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 70/180 (38%), Gaps = 63/180 (35%)
Query: 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNN---DYNKKPENIDTLLLYHNNLSFFPDNA 75
K + K D S +LD + L + +L+ N N++ TL + N+
Sbjct: 117 LKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENI------- 169
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
L SL+LSNNR+ L +S+++ + NLK+ NLSG
Sbjct: 170 ---PELLSLNLSNNRLYRLDD------MSSIVQK---------------APNLKILNLSG 205
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKL--CKLHVLSLGGNSLTDIPDTFGD 193
N+L+ RE++K+ KL L L GNSL DTF D
Sbjct: 206 NELKS------------------------ERELDKIKGLKLEELWLDGNSLC---DTFRD 238
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 45/200 (22%)
Query: 39 LATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAI 98
L +Q EL ++N NI +L + FF TNL+ L LS+N+I+ L
Sbjct: 34 LVSQKELSGVQNFNGDNSNIQSLA----GMQFF-------TNLKELHLSHNQISDLS--- 79
Query: 99 TNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPT--LKYLYL 156
PL +L E L + + LKNL IP+ L L+L
Sbjct: 80 ---PLK------DLTKLEELSVNRNRLKNLN-----------------GIPSACLSRLFL 113
Query: 157 GNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISN 216
NN L I+ L L +LS+ N L I G L +LE L L N++ + ++
Sbjct: 114 DNNELRDTDSLIH-LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN-TGGLTR 170
Query: 217 LKMLKSLLLHNNKLRTLPTE 236
LK + + L K P +
Sbjct: 171 LKKVNWIDLTGQKCVNEPVK 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,306,110
Number of Sequences: 62578
Number of extensions: 394765
Number of successful extensions: 1538
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 342
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)