Query psy3966
Match_columns 392
No_of_seqs 555 out of 3858
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:52:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.1E-26 2.3E-31 246.9 19.3 258 8-284 59-324 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.4E-26 3E-31 246.1 18.4 267 15-286 86-374 (968)
3 KOG0444|consensus 99.9 7.1E-29 1.5E-33 232.7 0.1 258 11-280 92-374 (1255)
4 KOG0444|consensus 99.9 5.9E-29 1.3E-33 233.2 -2.7 253 14-281 70-329 (1255)
5 KOG4194|consensus 99.9 2.1E-27 4.6E-32 221.2 6.3 269 19-300 146-446 (873)
6 KOG4194|consensus 99.9 5.8E-28 1.3E-32 224.9 2.4 272 14-300 117-423 (873)
7 KOG0472|consensus 99.9 9E-28 2E-32 214.7 -6.8 250 13-281 59-310 (565)
8 KOG0472|consensus 99.9 1.4E-27 3E-32 213.5 -8.9 247 20-283 43-290 (565)
9 PRK15370 E3 ubiquitin-protein 99.9 1.6E-22 3.4E-27 203.8 11.7 204 57-281 221-428 (754)
10 PRK15387 E3 ubiquitin-protein 99.9 3.4E-22 7.4E-27 200.3 12.7 225 22-286 222-463 (788)
11 PRK15370 E3 ubiquitin-protein 99.9 9.4E-22 2E-26 198.2 12.9 223 23-281 179-401 (754)
12 KOG0618|consensus 99.8 1.2E-22 2.6E-27 198.7 1.4 239 22-280 219-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 3.2E-20 6.9E-25 186.2 15.5 214 24-282 203-416 (788)
14 KOG0617|consensus 99.8 5.2E-23 1.1E-27 164.3 -4.3 161 55-239 32-194 (264)
15 KOG0618|consensus 99.8 2.3E-21 5E-26 189.8 -0.5 238 56-303 219-486 (1081)
16 KOG0617|consensus 99.8 2.1E-21 4.5E-26 155.2 -2.1 154 124-281 31-186 (264)
17 cd00116 LRR_RI Leucine-rich re 99.8 1.8E-19 3.8E-24 167.8 5.0 158 126-283 108-293 (319)
18 PLN03210 Resistant to P. syrin 99.8 9.8E-18 2.1E-22 179.6 18.6 216 55-280 610-881 (1153)
19 PLN03210 Resistant to P. syrin 99.8 2E-17 4.4E-22 177.3 19.4 214 55-280 656-905 (1153)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.3E-19 1.6E-23 163.6 4.8 260 15-280 16-319 (319)
21 KOG4237|consensus 99.7 5E-19 1.1E-23 158.6 -1.6 276 55-340 66-388 (498)
22 KOG4237|consensus 99.6 8.2E-18 1.8E-22 150.9 -2.3 246 23-282 68-360 (498)
23 KOG0532|consensus 99.6 2.9E-17 6.3E-22 153.7 -3.3 212 60-279 54-271 (722)
24 KOG1909|consensus 99.6 4.5E-16 9.7E-21 138.0 0.2 244 20-280 28-310 (382)
25 KOG0532|consensus 99.5 5.6E-16 1.2E-20 145.2 -0.2 199 53-256 72-271 (722)
26 COG4886 Leucine-rich repeat (L 99.5 1.5E-14 3.2E-19 138.7 6.6 195 83-284 97-293 (394)
27 COG4886 Leucine-rich repeat (L 99.5 2.6E-14 5.6E-19 137.1 7.1 202 60-268 97-300 (394)
28 KOG1259|consensus 99.4 6.5E-14 1.4E-18 122.0 1.0 219 56-283 182-414 (490)
29 KOG1259|consensus 99.4 6.3E-14 1.4E-18 122.1 0.9 202 55-262 213-416 (490)
30 PF14580 LRR_9: Leucine-rich r 99.4 5.4E-13 1.2E-17 111.1 5.9 106 126-233 19-128 (175)
31 KOG3207|consensus 99.4 5.5E-14 1.2E-18 128.2 -0.1 179 54-232 119-315 (505)
32 KOG3207|consensus 99.4 3.8E-14 8.3E-19 129.2 -1.9 177 55-231 145-339 (505)
33 PF14580 LRR_9: Leucine-rich r 99.3 1.4E-12 3E-17 108.7 5.2 101 124-225 40-147 (175)
34 KOG1909|consensus 99.3 2.9E-13 6.3E-18 120.3 -1.1 213 54-283 28-285 (382)
35 KOG0531|consensus 99.2 1.5E-12 3.2E-17 125.4 -0.7 242 20-282 70-319 (414)
36 KOG0531|consensus 99.1 5.3E-12 1.1E-16 121.6 -2.3 216 55-281 71-290 (414)
37 KOG2982|consensus 98.9 4.1E-10 8.9E-15 98.4 0.9 206 18-231 41-262 (418)
38 KOG4658|consensus 98.8 1.8E-09 4E-14 111.5 3.9 206 76-283 520-732 (889)
39 COG5238 RNA1 Ran GTPase-activa 98.8 1.2E-09 2.6E-14 94.4 1.7 166 122-287 88-291 (388)
40 KOG1859|consensus 98.8 6.6E-11 1.4E-15 114.5 -7.1 101 128-230 166-266 (1096)
41 KOG1859|consensus 98.8 1.7E-10 3.6E-15 111.8 -5.0 132 100-235 163-296 (1096)
42 KOG4658|consensus 98.8 4E-09 8.7E-14 109.0 4.5 173 56-231 545-730 (889)
43 KOG4579|consensus 98.7 1.4E-09 3.1E-14 84.5 -0.3 106 173-282 54-160 (177)
44 PLN03150 hypothetical protein; 98.7 5.5E-08 1.2E-12 98.2 10.6 106 173-282 419-529 (623)
45 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.3E-13 70.2 3.6 57 173-229 2-60 (61)
46 PLN03150 hypothetical protein; 98.7 4.9E-08 1.1E-12 98.6 9.4 87 197-287 420-509 (623)
47 KOG2120|consensus 98.7 7E-10 1.5E-14 97.1 -3.9 173 24-228 187-373 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.7 4.9E-09 1.1E-13 90.7 0.8 235 21-281 29-316 (388)
49 PF13855 LRR_8: Leucine rich r 98.7 1.8E-08 3.9E-13 69.0 3.4 58 150-207 2-61 (61)
50 KOG4579|consensus 98.6 5.3E-09 1.2E-13 81.3 -1.5 113 127-239 28-144 (177)
51 KOG2120|consensus 98.5 1.9E-09 4.1E-14 94.4 -5.4 153 127-279 186-349 (419)
52 KOG2982|consensus 98.5 4.9E-08 1.1E-12 85.7 1.0 56 59-114 48-110 (418)
53 PF12799 LRR_4: Leucine Rich r 98.4 3.1E-07 6.7E-12 57.9 3.3 41 56-96 1-41 (44)
54 PRK15386 type III secretion pr 98.4 7.9E-07 1.7E-11 83.3 7.4 32 218-255 156-187 (426)
55 KOG1644|consensus 98.3 9.7E-07 2.1E-11 73.4 5.0 81 150-231 43-126 (233)
56 PF12799 LRR_4: Leucine Rich r 98.3 7.6E-07 1.6E-11 56.1 3.4 38 196-233 2-39 (44)
57 KOG1644|consensus 98.3 1.9E-06 4E-11 71.8 6.0 83 122-204 60-149 (233)
58 KOG3665|consensus 98.2 1.1E-06 2.4E-11 88.9 3.8 132 126-258 122-263 (699)
59 PRK15386 type III secretion pr 98.2 8.3E-06 1.8E-10 76.5 9.2 133 122-279 48-188 (426)
60 KOG3665|consensus 98.2 1.4E-06 3E-11 88.2 4.2 133 22-162 122-263 (699)
61 KOG4341|consensus 97.9 6.8E-07 1.5E-11 82.0 -3.7 250 23-281 139-414 (483)
62 KOG2739|consensus 97.6 5.6E-05 1.2E-09 65.7 3.6 83 125-208 42-129 (260)
63 KOG2123|consensus 97.6 6.1E-06 1.3E-10 72.1 -2.3 100 55-155 18-123 (388)
64 KOG4341|consensus 97.5 6.1E-06 1.3E-10 76.0 -3.4 15 76-90 161-175 (483)
65 KOG2739|consensus 97.4 6.8E-05 1.5E-09 65.2 1.8 106 75-204 39-152 (260)
66 KOG2123|consensus 97.3 2.4E-05 5.3E-10 68.4 -2.2 79 126-206 19-99 (388)
67 KOG4308|consensus 97.2 5.5E-06 1.2E-10 80.4 -8.5 37 195-231 262-303 (478)
68 KOG4308|consensus 97.1 4.3E-06 9.4E-11 81.1 -9.5 180 103-282 89-304 (478)
69 PF13306 LRR_5: Leucine rich r 96.6 0.012 2.5E-07 46.5 7.9 9 194-202 80-88 (129)
70 PF13306 LRR_5: Leucine rich r 96.3 0.018 4E-07 45.4 7.4 86 168-261 31-118 (129)
71 KOG1947|consensus 96.3 0.00041 8.8E-09 68.2 -3.0 125 55-179 187-328 (482)
72 PF00560 LRR_1: Leucine Rich R 96.0 0.0024 5.2E-08 33.4 0.4 18 58-75 2-19 (22)
73 KOG0473|consensus 95.7 0.00054 1.2E-08 58.7 -4.3 90 190-283 37-126 (326)
74 PF13504 LRR_7: Leucine rich r 95.5 0.0089 1.9E-07 29.0 1.4 15 80-94 2-16 (17)
75 PF00560 LRR_1: Leucine Rich R 95.4 0.0078 1.7E-07 31.4 1.1 13 175-187 3-15 (22)
76 PF13504 LRR_7: Leucine rich r 94.8 0.017 3.7E-07 28.0 1.2 15 246-260 2-16 (17)
77 KOG1947|consensus 94.4 0.012 2.6E-07 57.8 0.3 155 15-185 207-375 (482)
78 smart00370 LRR Leucine-rich re 94.0 0.044 9.6E-07 29.8 1.9 20 79-98 2-21 (26)
79 smart00369 LRR_TYP Leucine-ric 94.0 0.044 9.6E-07 29.8 1.9 20 79-98 2-21 (26)
80 smart00370 LRR Leucine-rich re 93.2 0.082 1.8E-06 28.7 2.1 15 247-261 4-18 (26)
81 smart00369 LRR_TYP Leucine-ric 93.2 0.082 1.8E-06 28.7 2.1 15 247-261 4-18 (26)
82 KOG0473|consensus 93.0 0.0026 5.7E-08 54.6 -6.1 84 124-207 40-123 (326)
83 PF13516 LRR_6: Leucine Rich r 90.5 0.11 2.3E-06 27.6 0.5 20 21-40 1-20 (24)
84 smart00368 LRR_RI Leucine rich 90.0 0.27 5.9E-06 27.3 2.0 23 22-44 2-24 (28)
85 smart00364 LRR_BAC Leucine-ric 88.1 0.35 7.6E-06 26.2 1.4 18 245-262 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 84.8 0.78 1.7E-05 25.0 1.7 16 79-94 2-17 (26)
87 KOG4242|consensus 83.9 12 0.00025 36.3 10.0 107 21-139 164-281 (553)
88 KOG4242|consensus 82.6 3.1 6.6E-05 40.0 5.7 132 22-162 135-281 (553)
89 KOG3763|consensus 79.3 0.52 1.1E-05 45.9 -0.4 62 54-115 216-284 (585)
90 KOG3864|consensus 75.8 1 2.2E-05 38.2 0.4 80 149-228 101-186 (221)
91 KOG3864|consensus 74.8 0.79 1.7E-05 38.9 -0.5 79 196-276 102-184 (221)
92 KOG3763|consensus 67.8 3.5 7.6E-05 40.4 2.0 63 193-258 216-283 (585)
93 smart00367 LRR_CC Leucine-rich 63.8 6.1 0.00013 21.2 1.7 19 21-39 1-20 (26)
94 TIGR00864 PCC polycystin catio 40.3 18 0.0004 42.7 2.2 19 351-369 139-157 (2740)
95 TIGR00864 PCC polycystin catio 23.2 55 0.0012 39.1 2.3 31 178-208 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.1e-26 Score=246.87 Aligned_cols=258 Identities=33% Similarity=0.480 Sum_probs=161.6
Q ss_pred cccCCCCCCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CCCcccc-CCCCCCEEE
Q psy3966 8 SSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNAS-KFTNLRSLD 85 (392)
Q Consensus 8 ~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~-~l~~L~~L~ 85 (392)
.|.|..|+. ..+++.|||++|.+++.. +..+ ..+++|+.|+|++|+++ .+|..+. .+++|++|+
T Consensus 59 ~w~gv~c~~----~~~v~~L~L~~~~i~~~~-~~~~---------~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~ 124 (968)
T PLN00113 59 LWQGITCNN----SSRVVSIDLSGKNISGKI-SSAI---------FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124 (968)
T ss_pred cCcceecCC----CCcEEEEEecCCCccccC-ChHH---------hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEE
Confidence 355555543 236888888888876632 2222 23567888888888776 5666543 777777777
Q ss_pred ccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc-ccCccccCCcCCcEEECCCCCCC-c
Q psy3966 86 LSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-H 163 (392)
Q Consensus 86 Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~ 163 (392)
+++|+++...+...+.+|++|++++|.+.+ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+. .
T Consensus 125 Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 203 (968)
T PLN00113 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203 (968)
T ss_pred CcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc
Confidence 777777632222236667777777777664 56666677777777777777665 55666666777777777777665 4
Q ss_pred CchhhcCCCCccEEEccCCCCc-ccchhhcCCcCCCEEEccCCCCC-CcchhhhCCcccceeeccCCcCC-CCChhhHhh
Q psy3966 164 VPREINKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITL 240 (392)
Q Consensus 164 l~~~l~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~ 240 (392)
+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc
Confidence 5666666667777777766666 45666666666666666666665 45556666666666666666665 344444433
Q ss_pred hcccccCcEEEccCCCCC-CCCccccCCCCCCEEeCcCCCCcccc
Q psy3966 241 KCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPLVIRF 284 (392)
Q Consensus 241 ~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~N~l~~~~ 284 (392)
. +|+.|++++|.++ .+|..+..+++|++|++++|.+++..
T Consensus 284 ~----~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 284 Q----KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred c----CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 2 5666666666554 44555555555555555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.4e-26 Score=246.06 Aligned_cols=267 Identities=29% Similarity=0.418 Sum_probs=185.0
Q ss_pred CCCccccccccEEEeecCCCCchhhHhhhhccc--------CCc-----CCCCCCCccEEEccCCCCC-CCCccccCCCC
Q psy3966 15 DSDSFKTVSIKTLDFSYSSLDSETLATQIELLP--------NND-----YNKKPENIDTLLLYHNNLS-FFPDNASKFTN 80 (392)
Q Consensus 15 ~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~--------~~~-----~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~ 80 (392)
...+.++++|++|||++|.+.+......+..+. .+. -.+.+++|++|+|++|.++ .+|..++++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 344556777777777777765432221111100 000 0123566777777777776 56667777788
Q ss_pred CCEEEccCCcCC-cCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc-ccCccccCCcCCcEEECC
Q psy3966 81 LRSLDLSNNRIT-HLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLG 157 (392)
Q Consensus 81 L~~L~Ls~n~l~-~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~ 157 (392)
|++|++++|.+. .+|..+. +.+|++|++++|.+.+ .+|..+.++++|++|++++|.++ .+|..+..+++|++|+++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 888888888765 5666665 7778888888777765 56777777788888888887776 567677777888888888
Q ss_pred CCCCC-cCchhhcCCCCccEEEccCCCCc-ccchhhcCCcCCCEEEccCCCCC-CcchhhhCCcccceeeccCCcCC-CC
Q psy3966 158 NNSLN-HVPREINKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TL 233 (392)
Q Consensus 158 ~n~l~-~l~~~l~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~~ 233 (392)
+|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence 87776 56777777788888888887776 45677777778888888888776 56667777778888888888776 44
Q ss_pred ChhhHhhhcccccCcEEEccCCCCC-CCCccccCCCCCCEEeCcCCCCcccccc
Q psy3966 234 PTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPLVIRFVS 286 (392)
Q Consensus 234 ~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~N~l~~~~~~ 286 (392)
|..+..+ ++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+.
T Consensus 325 ~~~~~~l----~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 325 PVALTSL----PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred ChhHhcC----CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 5444443 37788888888776 6677777777888888888877665543
No 3
>KOG0444|consensus
Probab=99.94 E-value=7.1e-29 Score=232.70 Aligned_cols=258 Identities=36% Similarity=0.473 Sum_probs=157.6
Q ss_pred CCCCCCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCcc-ccCCCCCCEEEccCC
Q psy3966 11 SDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDN-ASKFTNLRSLDLSNN 89 (392)
Q Consensus 11 ~~~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~Ls~n 89 (392)
....+.+.+++..|+.||||+|.+.. .+..++. -+++-.|+|++|+|.+||.. +.+++.|-.||||+|
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~---------AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEY---------AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhh--cchhhhh---------hcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 34456677777788888888887653 3444432 35677778888888777765 367777777888888
Q ss_pred cCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc--ccCccccCCcCCcEEECCCCCCCcCch
Q psy3966 90 RITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE--QFPIQILDIPTLKYLYLGNNSLNHVPR 166 (392)
Q Consensus 90 ~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~ 166 (392)
++..+|+.+. +..|++|.+++|.+..- --.-+..+..|++|.+++.+-+ .+|.++..+.+|..+|++.|.+..+|+
T Consensus 161 rLe~LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 161 RLEMLPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred hhhhcCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH
Confidence 8777777776 77777777777765420 0111223334444444444333 455555555666666666666666666
Q ss_pred hhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCC--CCChhhHhhh---
Q psy3966 167 EINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR--TLPTEIITLK--- 241 (392)
Q Consensus 167 ~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~~--- 241 (392)
.+.++++|+.|++++|.++++....+...+|+.|+++.|+++.+|.++..+++|+.|.+.+|+++ ++|..++.+.
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 66666666666666666665555555555666666666666666666666666666666666554 5555555443
Q ss_pred ----------------cccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCC
Q psy3966 242 ----------------CLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 242 ----------------~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l 280 (392)
+.+.+|+.|.|+.|++-.+|+.+.-++.|+.||+..|+-
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 112356666666666666666666666666666666653
No 4
>KOG0444|consensus
Probab=99.94 E-value=5.9e-29 Score=233.23 Aligned_cols=253 Identities=28% Similarity=0.362 Sum_probs=220.9
Q ss_pred CCCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCc
Q psy3966 14 SDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITH 93 (392)
Q Consensus 14 ~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~ 93 (392)
..+....++.|+.+++..|++...+++..+.. +..|+.|||++|++.++|..+..-+++-+|+||+|+|..
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~---------l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet 140 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR---------LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET 140 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcc---------cccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc
Confidence 34456677888888888888888888877763 578999999999999999999999999999999999999
Q ss_pred CCcccc--CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCccc-CccccCCcCCcEEECCCCCCC--cCchhh
Q psy3966 94 LPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLN--HVPREI 168 (392)
Q Consensus 94 l~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~--~l~~~l 168 (392)
||..++ +..|-.|++++|++. .+|.-+.++..|++|++++|.+..+ -..+..+++|+.|.+++.+-+ .+|..+
T Consensus 141 IPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 141 IPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred CCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 999888 888999999999997 6888899999999999999987732 224456888999999988644 789999
Q ss_pred cCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCc
Q psy3966 169 NKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLK 248 (392)
Q Consensus 169 ~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 248 (392)
..+.+|..++++.|.+..+|+.+-.+.+|+.|+|++|+|+++........+|++|++|.|+++.+|..+..++ +|+
T Consensus 219 d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~----kL~ 294 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT----KLT 294 (1255)
T ss_pred hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH----HHH
Confidence 9999999999999999999999999999999999999999887778888899999999999999999988876 888
Q ss_pred EEEccCCCCC--CCCccccCCCCCCEEeCcCCCCc
Q psy3966 249 SLLLHNNKLR--TLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 249 ~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
.|.+.+|+++ .||+.++++..|+.+..++|.+.
T Consensus 295 kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred HHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 9999998876 78888888888888888888774
No 5
>KOG4194|consensus
Probab=99.94 E-value=2.1e-27 Score=221.20 Aligned_cols=269 Identities=26% Similarity=0.349 Sum_probs=186.3
Q ss_pred cccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCcc
Q psy3966 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQA 97 (392)
Q Consensus 19 ~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~ 97 (392)
.-++.|++||||.|.|+. ++...|..+ .++++|+|++|.|+.+. ..|..+.+|.+|.|+.|+++.+|..
T Consensus 146 ~~l~alrslDLSrN~is~---------i~~~sfp~~-~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r 215 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISE---------IPKPSFPAK-VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR 215 (873)
T ss_pred HhHhhhhhhhhhhchhhc---------ccCCCCCCC-CCceEEeeccccccccccccccccchheeeecccCcccccCHH
Confidence 345677888888887553 233333222 47777888888777553 3466677777777777777777766
Q ss_pred cc--CccchhhhhhcCCCCCC-----------------------CCCccCCCCCCCcEEeccCCCCcccC-ccccCCcCC
Q psy3966 98 IT--NFPLSTLIARNNLLTAE-----------------------SLPKDMSNLKNLKVFNLSGNQLEQFP-IQILDIPTL 151 (392)
Q Consensus 98 ~~--~~~L~~L~l~~n~~~~~-----------------------~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L 151 (392)
.+ +++|+.|++..|++... --...|..+.++++|+|+.|+++.+. .+++++++|
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred HhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchh
Confidence 55 67777777777765431 11233455566666677777666553 345567777
Q ss_pred cEEECCCCCCCcC-chhhcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCC
Q psy3966 152 KYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNN 228 (392)
Q Consensus 152 ~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n 228 (392)
+.|++++|.|..+ ++.+..+++|++|+|++|+++.++ ..|..+..|++|.|+.|.++.+.+ .|..+++|++|||++|
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence 7777777777754 455667777888888888887774 467777778888888888776665 5777888999999999
Q ss_pred cCC-CCChhhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCccccccCccCCCCCHHHHHH
Q psy3966 229 KLR-TLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELAS 300 (392)
Q Consensus 229 ~l~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~L~~ 300 (392)
.++ .+......+. +.++|+.|++.+|++..+|. .+.++..|++|||.+|.+....+..+. +..|++|-.
T Consensus 376 ~ls~~IEDaa~~f~-gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe--~m~Lk~Lv~ 446 (873)
T KOG4194|consen 376 ELSWCIEDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE--PMELKELVM 446 (873)
T ss_pred eEEEEEecchhhhc-cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccc--cchhhhhhh
Confidence 887 3433333333 46799999999999999985 677899999999999999765544433 346777654
No 6
>KOG4194|consensus
Probab=99.94 E-value=5.8e-28 Score=224.92 Aligned_cols=272 Identities=24% Similarity=0.251 Sum_probs=172.2
Q ss_pred CCCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCcc-ccCCCCCCEEEccCCcCC
Q psy3966 14 SDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDN-ASKFTNLRSLDLSNNRIT 92 (392)
Q Consensus 14 ~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~Ls~n~l~ 92 (392)
.+..+....+|+.|+|.+|.|+...-.. +. .++.|++|||+.|.|+.++.. |..-.++++|+|++|+|+
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~-L~---------~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEE-LS---------ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred cccccccccceeEEeeeccccccccHHH-HH---------hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc
Confidence 3344445567999999999988643332 22 247899999999999988653 555678999999999999
Q ss_pred cCCcccc--CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCccc-CccccCCcCCcEEECCCCCCCcCch---
Q psy3966 93 HLPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLNHVPR--- 166 (392)
Q Consensus 93 ~l~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~--- 166 (392)
.+....+ +.+|.+|.++.|+++. .-+..|.++++|+.|+|..|+|..+ ...+.++++|+.|.+..|.+..+.+
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred ccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce
Confidence 8776665 7799999999999985 4446778899999999999988743 2233445555555555555554322
Q ss_pred ----------------------hhcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCcch-hhhCCcccce
Q psy3966 167 ----------------------EINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKS 222 (392)
Q Consensus 167 ----------------------~l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~ 222 (392)
++..++.|+.|++++|.|..+ ++.+...++|++|+|++|+|+.+++ .+..+..|++
T Consensus 266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence 234455555555555555544 3445555555566666665555543 4555555566
Q ss_pred eeccCCcCCCCChhhHhhhcccccCcEEEccCCCCC----CCCccccCCCCCCEEeCcCCCCccccccCccCCCCCHHHH
Q psy3966 223 LLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR----TLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLEL 298 (392)
Q Consensus 223 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~l~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~L 298 (392)
|.|++|.++.+.+..+.. ..+|+.|||++|.++ .-...+..++.|+.|++.||++... +.......+.|.+|
T Consensus 346 LnLs~Nsi~~l~e~af~~---lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVG---LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHL 421 (873)
T ss_pred hcccccchHHHHhhHHHH---hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCccccee
Confidence 666666555554443332 236666677766664 2222344566777777777766532 22222234444444
Q ss_pred HH
Q psy3966 299 AS 300 (392)
Q Consensus 299 ~~ 300 (392)
..
T Consensus 422 dL 423 (873)
T KOG4194|consen 422 DL 423 (873)
T ss_pred cC
Confidence 43
No 7
>KOG0472|consensus
Probab=99.92 E-value=9e-28 Score=214.68 Aligned_cols=250 Identities=34% Similarity=0.484 Sum_probs=206.3
Q ss_pred CCCCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCC
Q psy3966 13 SSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT 92 (392)
Q Consensus 13 ~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~ 92 (392)
....+..++..+++|++.+|.+.. .++.+.. ...++.++.++|+++.+|+.++.+.+|+.+++++|.+.
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~--lp~aig~---------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQ--LPAAIGE---------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hccHhhhcccceeEEEeccchhhh--CCHHHHH---------HHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee
Confidence 344556667778888888887653 4444443 35677888888888888888888888888888888888
Q ss_pred cCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCC
Q psy3966 93 HLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKL 171 (392)
Q Consensus 93 ~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~ 171 (392)
.+++.++ +..++.++..+|++. ..|..+.++.++..+++.+|.+.++|+..-+|+.|++||...|.++.+|+.++.+
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGL 205 (565)
T ss_pred ecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcch
Confidence 8888877 888888888888887 5788888888888888888888888877777888888888888888888888888
Q ss_pred CCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchh-hhCCcccceeeccCCcCCCCChhhHhhhcccccCcEE
Q psy3966 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPAS-ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSL 250 (392)
Q Consensus 172 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 250 (392)
.+|.-|++.+|++..+| .|.++..|++++++.|.|..+|.. .++++++..||+.+|+++++|.++..+. +|..|
T Consensus 206 ~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLr----sL~rL 280 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLR----SLERL 280 (565)
T ss_pred hhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhh----hhhhh
Confidence 88888888888888888 588888889999998988888875 4588899999999999999998887765 78999
Q ss_pred EccCCCCCCCCccccCCCCCCEEeCcCCCCc
Q psy3966 251 LLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 251 ~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
|+++|.|+.+|..++++ +|+.|-+.||++.
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCchH
Confidence 99999999999999998 8999999999884
No 8
>KOG0472|consensus
Probab=99.91 E-value=1.4e-27 Score=213.45 Aligned_cols=247 Identities=28% Similarity=0.455 Sum_probs=224.7
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT 99 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~ 99 (392)
.-..+..+++++|.+.. ....+. .+..++.|++.+|+++.+|++++.+..++.++.++|++..+|+.+.
T Consensus 43 ~qv~l~~lils~N~l~~--l~~dl~---------nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~ 111 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEV--LREDLK---------NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIG 111 (565)
T ss_pred hhcchhhhhhccCchhh--ccHhhh---------cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHh
Confidence 34567889999998653 333332 4578999999999999999999999999999999999999999998
Q ss_pred -CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEE
Q psy3966 100 -NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLS 178 (392)
Q Consensus 100 -~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~ 178 (392)
...+..+++++|.+. .+++.++.+..++.++..+|+++.+|++++++.++..+++.+|++.++|+..-+++.|++|+
T Consensus 112 s~~~l~~l~~s~n~~~--el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELK--ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhhcccccee--ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 999999999999987 68899999999999999999999999999999999999999999999998887899999999
Q ss_pred ccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCC
Q psy3966 179 LGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258 (392)
Q Consensus 179 l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 258 (392)
...|.++.+|+.++.+.+|+.|++..|+|..+| .|..+..|++|+++.|+|..+|.....- .+++..||+.+|+++
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~---L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKH---LNSLLVLDLRDNKLK 265 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcc---cccceeeeccccccc
Confidence 999999999999999999999999999999998 7999999999999999999999887632 248999999999999
Q ss_pred CCCccccCCCCCCEEeCcCCCCccc
Q psy3966 259 TLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 259 ~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
++|.++..+.+|.+||+|+|.+++-
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccccC
Confidence 9999999999999999999998753
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.88 E-value=1.6e-22 Score=203.79 Aligned_cols=204 Identities=26% Similarity=0.442 Sum_probs=96.7
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC
Q psy3966 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136 (392)
Q Consensus 57 ~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 136 (392)
+|++|++++|+++.+|..+. ++|+.|+|++|.++.+|..+. ..|+.|++++|.+. .+|..+. ++|+.|++++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~-s~L~~L~Ls~N~L~--~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP-SALQSLDLFHNKIS--CLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh-CCCCEEECcCCccC--ccccccC--CCCcEEECCCC
Confidence 44455555554444444332 244455555555444443322 23444555544444 2333321 24555555555
Q ss_pred CCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhC
Q psy3966 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISN 216 (392)
Q Consensus 137 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~ 216 (392)
+++.+|..+. ++|+.|++++|.++.+|..+. ++|++|++++|.++.+|..+. ++|+.|++++|+++.+|..+.
T Consensus 294 ~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp- 366 (754)
T PRK15370 294 SIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP- 366 (754)
T ss_pred ccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc-
Confidence 5544443321 244445555555544443322 345555555555555554332 455555555555555554332
Q ss_pred CcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccC----CCCCCEEeCcCCCCc
Q psy3966 217 LKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT----LKCLSELSLRDNPLV 281 (392)
Q Consensus 217 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~----l~~L~~L~l~~N~l~ 281 (392)
++|+.|++++|.++.+|..+.. .|+.|++++|+++.+|..+.. ++.+..|++.+|+++
T Consensus 367 -~~L~~LdLs~N~Lt~LP~~l~~------sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 -PTITTLDVSRNALTNLPENLPA------ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -CCcCEEECCCCcCCCCCHhHHH------HHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3555555555555555544321 455555555555555443322 345555555555554
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=3.4e-22 Score=200.30 Aligned_cols=225 Identities=33% Similarity=0.378 Sum_probs=150.0
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~ 101 (392)
++|+.|++++|+++. ++ ..+++|++|++++|+++.+|.. .++|+.|++++|.++.+|.. ..
T Consensus 222 ~~L~~L~L~~N~Lt~--LP------------~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l--p~ 282 (788)
T PRK15387 222 AHITTLVIPDNNLTS--LP------------ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL--PS 282 (788)
T ss_pred cCCCEEEccCCcCCC--CC------------CCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc--hh
Confidence 368888888888764 11 1246788888888888877643 34666677766666655542 23
Q ss_pred cchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcccc-----------------CCcCCcEEECCCCCCCcC
Q psy3966 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-----------------DIPTLKYLYLGNNSLNHV 164 (392)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~-----------------~l~~L~~L~l~~n~l~~l 164 (392)
.|+.|++++|.++ .+|.. .++|+.|++++|+++.+|.... -..+|++|++++|+++.+
T Consensus 283 ~L~~L~Ls~N~Lt--~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 283 GLCKLWIFGNQLT--SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASL 357 (788)
T ss_pred hcCEEECcCCccc--ccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCC
Confidence 4555555555554 23321 2455555555555554432110 013566666666666666
Q ss_pred chhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhccc
Q psy3966 165 PREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLS 244 (392)
Q Consensus 165 ~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 244 (392)
|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.++.+|... ++|+.|++++|.++.+|...
T Consensus 358 P~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N~LssIP~l~------- 421 (788)
T PRK15387 358 PTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPMLP------- 421 (788)
T ss_pred CCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCcc---cCCCEEEccCCcCCCCCcch-------
Confidence 542 23566666777766666542 246888888888888777543 57888999999998887532
Q ss_pred ccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcccccc
Q psy3966 245 EKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVS 286 (392)
Q Consensus 245 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~ 286 (392)
.+|+.|++++|+|+.+|..+..+++|+.|++++|++++..+.
T Consensus 422 ~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 422 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 368889999999999999999999999999999999876543
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.87 E-value=9.4e-22 Score=198.15 Aligned_cols=223 Identities=28% Similarity=0.453 Sum_probs=171.4
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCcc
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP 102 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~ 102 (392)
+...|+++++.++. ++..+ +++|+.|+|++|+++.+|..+. ++|++|++++|+++.+|..+ ...
T Consensus 179 ~~~~L~L~~~~Lts--LP~~I-----------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTT--IPACI-----------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-PDT 242 (754)
T ss_pred CceEEEeCCCCcCc--CCccc-----------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-hcc
Confidence 46788888888764 22211 3578899999999988887654 58899999999988887654 346
Q ss_pred chhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCC
Q psy3966 103 LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGN 182 (392)
Q Consensus 103 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n 182 (392)
|+.|++++|.+. .+|..+. .+|+.|++++|+++.+|..+. ++|++|++++|.++.+|..+. ++|+.|++++|
T Consensus 243 L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N 314 (754)
T PRK15370 243 IQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN 314 (754)
T ss_pred ccEEECcCCccC--cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence 888888888886 4665553 478889999888888876553 478889999988888876553 47888888888
Q ss_pred CCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc
Q psy3966 183 SLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT 262 (392)
Q Consensus 183 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~ 262 (392)
.++.+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|..+. ++|+.|++++|.++.+|.
T Consensus 315 ~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp------~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 315 SLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP------PTITTLDVSRNALTNLPE 384 (754)
T ss_pred ccccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc------CCcCEEECCCCcCCCCCH
Confidence 8888876443 588888999998888877553 688899999998888776442 378899999998888887
Q ss_pred cccCCCCCCEEeCcCCCCc
Q psy3966 263 EIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 263 ~l~~l~~L~~L~l~~N~l~ 281 (392)
.+. ..|+.|++++|+++
T Consensus 385 ~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 385 NLP--AALQIMQASRNNLV 401 (754)
T ss_pred hHH--HHHHHHhhccCCcc
Confidence 664 36888888888876
No 12
>KOG0618|consensus
Probab=99.85 E-value=1.2e-22 Score=198.74 Aligned_cols=239 Identities=33% Similarity=0.453 Sum_probs=184.5
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc-C
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT-N 100 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~-~ 100 (392)
++++.|+.++|.++... ....+.+|+++++++|+++.+|++++.+.+|+.++..+|+++.+|..+. .
T Consensus 219 ~~l~~L~a~~n~l~~~~------------~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~ 286 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLD------------VHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRI 286 (1081)
T ss_pred cchheeeeccCcceeec------------cccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhh
Confidence 45566666666654211 1134578999999999999999999999999999999999999998888 8
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccC--------------------------CcCCcEE
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD--------------------------IPTLKYL 154 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~--------------------------l~~L~~L 154 (392)
.+|+.+.+.+|.+. .+|.....++.|++|++..|++..+|+.+.. ++.|+.|
T Consensus 287 ~~L~~l~~~~nel~--yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELE--YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQEL 364 (1081)
T ss_pred hhHHHHHhhhhhhh--hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHH
Confidence 99999999999997 6888888899999999999999877764322 2345666
Q ss_pred ECCCCCCC-cCchhhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCC
Q psy3966 155 YLGNNSLN-HVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232 (392)
Q Consensus 155 ~l~~n~l~-~l~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~ 232 (392)
++.+|.++ ..-+.+....+|+.|+|++|++..+|+ .+.++..|++|+|++|+++.+|..+..++.|++|...+|++..
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee
Confidence 77777766 334556677788888888888888875 4577888888888888888888888888888888888888888
Q ss_pred CChhhHhhhcccccCcEEEccCCCCCC--CCccccCCCCCCEEeCcCCCC
Q psy3966 233 LPTEIITLKCLSEKLKSLLLHNNKLRT--LPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 233 ~~~~~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~N~l 280 (392)
+| .+..++ .|+.+|++.|+++. +|..... ++|++||++||..
T Consensus 445 fP-e~~~l~----qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FP-ELAQLP----QLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ch-hhhhcC----cceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 87 444443 78888888888873 3433332 7888888888864
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.2e-20 Score=186.23 Aligned_cols=214 Identities=35% Similarity=0.417 Sum_probs=171.0
Q ss_pred ccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccc
Q psy3966 24 IKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPL 103 (392)
Q Consensus 24 L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L 103 (392)
-..|||+++.++. +|..+ .++|+.|++.+|+++.+|.. .++|++|++++|+++.+|.. ..+|
T Consensus 203 ~~~LdLs~~~Lts--LP~~l-----------~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--p~sL 264 (788)
T PRK15387 203 NAVLNVGESGLTT--LPDCL-----------PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--PPGL 264 (788)
T ss_pred CcEEEcCCCCCCc--CCcch-----------hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--cccc
Confidence 4689999999874 44333 25799999999999999863 58999999999999998853 4689
Q ss_pred hhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCC
Q psy3966 104 STLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNS 183 (392)
Q Consensus 104 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~ 183 (392)
+.|++++|.+. .+|... .+|+.|++++|+++.+|.. .++|+.|++++|.+..+|... ..|+.|++++|.
T Consensus 265 ~~L~Ls~N~L~--~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~ 333 (788)
T PRK15387 265 LELSIFSNPLT--HLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ 333 (788)
T ss_pred ceeeccCCchh--hhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccCc
Confidence 99999999887 455433 5788999999999988853 478999999999999887532 367888999999
Q ss_pred CcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCcc
Q psy3966 184 LTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE 263 (392)
Q Consensus 184 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~ 263 (392)
++.+|.. ..+|++|++++|+|+.+|.. .++|+.|++++|.++.+|... .+|+.|++++|.|+.+|..
T Consensus 334 L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l~-------~~L~~LdLs~N~Lt~LP~l 400 (788)
T PRK15387 334 LTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLTSLPVL 400 (788)
T ss_pred ccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCcccc-------cccceEEecCCcccCCCCc
Confidence 9988752 25799999999999988763 356788889999988877531 3788999999999888764
Q ss_pred ccCCCCCCEEeCcCCCCcc
Q psy3966 264 IITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 264 l~~l~~L~~L~l~~N~l~~ 282 (392)
. ++|+.|++++|.++.
T Consensus 401 ~---s~L~~LdLS~N~Lss 416 (788)
T PRK15387 401 P---SELKELMVSGNRLTS 416 (788)
T ss_pred c---cCCCEEEccCCcCCC
Confidence 3 578889999998864
No 14
>KOG0617|consensus
Probab=99.83 E-value=5.2e-23 Score=164.32 Aligned_cols=161 Identities=37% Similarity=0.586 Sum_probs=91.5
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 134 (392)
+.+++.|.|++|+++.+|..+..+.+|++|++++|+++.+|. .++.+++|+.|++.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~------------------------~issl~klr~lnvg 87 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPT------------------------SISSLPKLRILNVG 87 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcCh------------------------hhhhchhhhheecc
Confidence 345556666666666666666666666666666666665554 44555555555555
Q ss_pred CCCCcccCccccCCcCCcEEECCCCCCC--cCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcch
Q psy3966 135 GNQLEQFPIQILDIPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA 212 (392)
Q Consensus 135 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~ 212 (392)
-|++..+|.+++.++.|+.||+.+|++. .+|..|..++.|+.|+++.|.+.-+|..++++++|+.|.+..|.+-++|.
T Consensus 88 mnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 88 MNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred hhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 5555555555555555555555555544 34555555555555555555555555555555555555555555555555
Q ss_pred hhhCCcccceeeccCCcCCCCChhhHh
Q psy3966 213 SISNLKMLKSLLLHNNKLRTLPTEIIT 239 (392)
Q Consensus 213 ~l~~l~~L~~L~L~~n~l~~~~~~~~~ 239 (392)
.++.++.|++|.+.+|+++-+|+++..
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhhhh
Confidence 555566666666666666655555443
No 15
>KOG0618|consensus
Probab=99.81 E-value=2.3e-21 Score=189.83 Aligned_cols=238 Identities=32% Similarity=0.403 Sum_probs=188.8
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 134 (392)
++++.|+.++|.++.+... .--.+|+++++++|+++.+|.++. +.+|+.+.+.+|+++ .+|..+....+|+.|++.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~-p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH-PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcceeeccc-cccccceeeecchhhhhcchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhh
Confidence 3555566666655532111 223578899999999999998887 889999999999985 678888888899999999
Q ss_pred CCCCcccCccccCCcCCcEEECCCCCCCcCchhhc--------------------------CCCCccEEEccCCCCc-cc
Q psy3966 135 GNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREIN--------------------------KLCKLHVLSLGGNSLT-DI 187 (392)
Q Consensus 135 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~--------------------------~~~~L~~L~l~~n~l~-~l 187 (392)
.|.+..+|+.....+.|++|++..|.+..+|+.+. ..+.|+.|++.+|.++ ..
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 99999888888889999999999999887765321 1224677777788887 23
Q ss_pred chhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccC
Q psy3966 188 PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT 266 (392)
Q Consensus 188 ~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~ 266 (392)
-+.+.+..+|+.|+|++|++..+|. .+.++..|++|+||+|+++.+|..+..+. .|++|...+|++..+| .+..
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~----~L~tL~ahsN~l~~fP-e~~~ 450 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG----RLHTLRAHSNQLLSFP-ELAQ 450 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh----hhHHHhhcCCceeech-hhhh
Confidence 3457888999999999999999997 57899999999999999999998887776 8999999999999999 8999
Q ss_pred CCCCCEEeCcCCCCccccccCccCCC-CCHHHHHHhhh
Q psy3966 267 LKCLSELSLRDNPLVIRFVSDMTYKP-PSLLELASRTL 303 (392)
Q Consensus 267 l~~L~~L~l~~N~l~~~~~~~~~~~~-~~l~~L~~~~~ 303 (392)
++.|+.+|++.|.++...... ..| +.|++|...++
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~--~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPE--ALPSPNLKYLDLSGN 486 (1081)
T ss_pred cCcceEEecccchhhhhhhhh--hCCCcccceeeccCC
Confidence 999999999999997543332 224 67776665443
No 16
>KOG0617|consensus
Probab=99.80 E-value=2.1e-21 Score=155.22 Aligned_cols=154 Identities=36% Similarity=0.563 Sum_probs=96.4
Q ss_pred CCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEcc
Q psy3966 124 NLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203 (392)
Q Consensus 124 ~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~ 203 (392)
.+.+++.|.+++|+++.+|+.+..+.+|+.|++++|+++++|..+..+++|+.|+++-|++..+|..|+.++.|+.||++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 44555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCC--CcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCc
Q psy3966 204 DNQLE--SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 204 ~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
+|++. .+|..|..++.|+.|++++|.+.-+|++++.+. +|+.|.+..|.+-++|..++.+..|++|.+.+|.++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt----~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLT----NLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhc----ceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 66665 455555566666666666666666666666554 566666666666666666666666666666666654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.8e-19 Score=167.79 Aligned_cols=158 Identities=27% Similarity=0.362 Sum_probs=108.5
Q ss_pred CCCcEEeccCCCCc-----ccCccccCC-cCCcEEECCCCCCC-----cCchhhcCCCCccEEEccCCCCc-----ccch
Q psy3966 126 KNLKVFNLSGNQLE-----QFPIQILDI-PTLKYLYLGNNSLN-----HVPREINKLCKLHVLSLGGNSLT-----DIPD 189 (392)
Q Consensus 126 ~~L~~L~l~~n~l~-----~l~~~l~~l-~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~l~-----~l~~ 189 (392)
++|++|++++|+++ .+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|.++ .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 45888888888776 222334455 78888888888877 34445667778888888888887 2344
Q ss_pred hhcCCcCCCEEEccCCCCCC-----cchhhhCCcccceeeccCCcCCCCC-hhh-HhhhcccccCcEEEccCCCCC----
Q psy3966 190 TFGDLYQLEALILSDNQLES-----LPASISNLKMLKSLLLHNNKLRTLP-TEI-ITLKCLSEKLKSLLLHNNKLR---- 258 (392)
Q Consensus 190 ~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~~~-~~~-~~~~~~~~~L~~L~l~~n~l~---- 258 (392)
.+...++|++|++++|.++. +...+..+++|++|++++|.+++.. ..+ ..+....+.|++|++++|.++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 55666788888888888762 3345667788889999888877421 111 111111247889999988885
Q ss_pred -CCCccccCCCCCCEEeCcCCCCccc
Q psy3966 259 -TLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 259 -~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
.+...+..+++|+++++++|.+...
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHH
Confidence 3445566678899999999988754
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=9.8e-18 Score=179.63 Aligned_cols=216 Identities=28% Similarity=0.401 Sum_probs=128.5
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCc-CCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEec
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNR-ITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~-l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 133 (392)
+.+|++|++++|++..++..+..+++|++|+|+++. ++.+|.....++|++|++++|.... .+|..+.++++|+.|++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeC
Confidence 456777777777777777667777777777777654 5566653346777777777765443 56667777777777777
Q ss_pred cCC-CCcccCccccCCcCCcEEECCCC---------------------CCCcCchhhc----------------------
Q psy3966 134 SGN-QLEQFPIQILDIPTLKYLYLGNN---------------------SLNHVPREIN---------------------- 169 (392)
Q Consensus 134 ~~n-~l~~l~~~l~~l~~L~~L~l~~n---------------------~l~~l~~~l~---------------------- 169 (392)
++| .++.+|..+ ++++|++|++++| .+..+|..+.
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccc
Confidence 765 455555433 4455555555544 3333332110
Q ss_pred --------CCCCccEEEccCCC-CcccchhhcCCcCCCEEEccCC-CCCCcchhhhCCcccceeeccCCc-CCCCChhhH
Q psy3966 170 --------KLCKLHVLSLGGNS-LTDIPDTFGDLYQLEALILSDN-QLESLPASISNLKMLKSLLLHNNK-LRTLPTEII 238 (392)
Q Consensus 170 --------~~~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~L~~n~-l~~~~~~~~ 238 (392)
..++|+.|++++|. +..+|..++++++|+.|++++| .++.+|..+ .+++|+.|++++|. +..+|.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--- 843 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--- 843 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---
Confidence 01234444444442 2245555555555555555554 344444433 34555555555542 223322
Q ss_pred hhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCC
Q psy3966 239 TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 239 ~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l 280 (392)
...+|+.|++++|.++.+|.++..+++|+.|++++|+-
T Consensus 844 ----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 844 ----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred ----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence 22478888888888888888888888899998888543
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=2e-17 Score=177.26 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=154.2
Q ss_pred CCCccEEEccCCC-CCCCCccccCCCCCCEEEccCCc-CCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEe
Q psy3966 55 PENIDTLLLYHNN-LSFFPDNASKFTNLRSLDLSNNR-ITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132 (392)
Q Consensus 55 ~~~L~~L~L~~n~-l~~i~~~l~~l~~L~~L~Ls~n~-l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 132 (392)
+++|++|+|++|. +..+|..+.++++|+.|++++|. ++.+|....+.+|+.|++++|.... .+|.. ..+|++|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~-~~p~~---~~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK-SFPDI---STNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc-ccccc---cCCcCeee
Confidence 4556666666653 34566666666666666666653 5566655555666666666654332 23321 34667777
Q ss_pred ccCCCCcccCcccc------------------------------CCcCCcEEECCCCC-CCcCchhhcCCCCccEEEccC
Q psy3966 133 LSGNQLEQFPIQIL------------------------------DIPTLKYLYLGNNS-LNHVPREINKLCKLHVLSLGG 181 (392)
Q Consensus 133 l~~n~l~~l~~~l~------------------------------~l~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~ 181 (392)
+++|.+..+|..+. ..++|++|++++|. +..+|..++++++|+.|++++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 77777766654320 12468888888874 557899999999999999998
Q ss_pred C-CCcccchhhcCCcCCCEEEccCCC-CCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccC-CCCC
Q psy3966 182 N-SLTDIPDTFGDLYQLEALILSDNQ-LESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN-NKLR 258 (392)
Q Consensus 182 n-~l~~l~~~l~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~-n~l~ 258 (392)
| .+..+|..+ .+++|++|++++|. +..+|.. .++|+.|++++|.++.+|..+..+. +|+.|++++ +.++
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~----~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFS----NLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCC----CCCEEECCCCCCcC
Confidence 7 567888765 78999999999974 4456543 3689999999999999998877665 899999998 4578
Q ss_pred CCCccccCCCCCCEEeCcCCCC
Q psy3966 259 TLPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 259 ~l~~~l~~l~~L~~L~l~~N~l 280 (392)
.+|..+..+++|+.+++++|.-
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ccCcccccccCCCeeecCCCcc
Confidence 9999899999999999999853
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=7.3e-19 Score=163.64 Aligned_cols=260 Identities=26% Similarity=0.315 Sum_probs=188.1
Q ss_pred CCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCC-------CCccccCCCCCCEEEcc
Q psy3966 15 DSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSF-------FPDNASKFTNLRSLDLS 87 (392)
Q Consensus 15 ~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~-------i~~~l~~l~~L~~L~Ls 87 (392)
...+..+.+|++|+++++.++..........+ ...+++++++++++.+.. ++..+..+++|+.|+++
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l------~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 89 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASAL------RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLS 89 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHH------hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEcc
Confidence 34455677899999999999876554433322 245679999999998763 23456778999999999
Q ss_pred CCcCCc-CCcccc-Ccc---chhhhhhcCCCCCCC---CCccCCCC-CCCcEEeccCCCCc-----ccCccccCCcCCcE
Q psy3966 88 NNRITH-LPQAIT-NFP---LSTLIARNNLLTAES---LPKDMSNL-KNLKVFNLSGNQLE-----QFPIQILDIPTLKY 153 (392)
Q Consensus 88 ~n~l~~-l~~~~~-~~~---L~~L~l~~n~~~~~~---~~~~~~~l-~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~ 153 (392)
+|.+.. .+..+. ... |++|++++|.+.... +...+..+ ++|++|++++|.++ .+...+..+++|++
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 90 DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE 169 (319)
T ss_pred CCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE
Confidence 999873 333333 444 999999999987422 22345666 89999999999988 33444556789999
Q ss_pred EECCCCCCC-----cCchhhcCCCCccEEEccCCCCcc-----cchhhcCCcCCCEEEccCCCCCCc-chhh-h----CC
Q psy3966 154 LYLGNNSLN-----HVPREINKLCKLHVLSLGGNSLTD-----IPDTFGDLYQLEALILSDNQLESL-PASI-S----NL 217 (392)
Q Consensus 154 L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l-~~~l-~----~l 217 (392)
|++++|.++ .++..+..+++|++|++++|.++. ++..+..+++|++|++++|.++.. ...+ . ..
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 999999988 344556777899999999999873 345677889999999999998842 1112 1 24
Q ss_pred cccceeeccCCcCCCCC-hhhHhhhcccccCcEEEccCCCCCC-----CCccccCC-CCCCEEeCcCCCC
Q psy3966 218 KMLKSLLLHNNKLRTLP-TEIITLKCLSEKLKSLLLHNNKLRT-----LPTEIITL-KCLSELSLRDNPL 280 (392)
Q Consensus 218 ~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~l~~N~l 280 (392)
+.|+.|++++|.++... ..+.......++|+.+++++|.++. +...+... +.|+++++.+|++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 79999999999987221 1111111122589999999999983 33344445 7899999999875
No 21
>KOG4237|consensus
Probab=99.71 E-value=5e-19 Score=158.65 Aligned_cols=276 Identities=25% Similarity=0.313 Sum_probs=189.3
Q ss_pred CCCccEEEccCCCCCCCCcc-ccCCCCCCEEEccCCcCCcCCcccc--Cccchhhhhhc-CCCCCCCCCccCCCCCCCcE
Q psy3966 55 PENIDTLLLYHNNLSFFPDN-ASKFTNLRSLDLSNNRITHLPQAIT--NFPLSTLIARN-NLLTAESLPKDMSNLKNLKV 130 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~Ls~n~l~~l~~~~~--~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~ 130 (392)
++..++++|..|+|+.||+. |+.+++|+.||||+|.|+.|.+..+ +..+.+|.+.+ |+|+. .-...|.++..++.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHH
Confidence 56788999999999988764 7889999999999999998776665 77777766665 88874 33456788888999
Q ss_pred EeccCCCCcccCc-cccCCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCc---cc----------chhhcCCc
Q psy3966 131 FNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLT---DI----------PDTFGDLY 195 (392)
Q Consensus 131 L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~---~l----------~~~l~~l~ 195 (392)
|.+.-|++.-++. .+..++++..|.+.+|.+..++. .+..+..++++.+..|.+. .+ |-.++...
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 9998888885544 45568888889999998888776 5777788888888777632 11 11111111
Q ss_pred C----------------------CCEE--Ec-cCC-CCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCc
Q psy3966 196 Q----------------------LEAL--IL-SDN-QLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLK 248 (392)
Q Consensus 196 ~----------------------L~~L--~L-~~n-~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 248 (392)
- ++.+ .+ +.+ .....|. .|..+++|+.|++++|+++.+....+.-. ..++
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~---a~l~ 301 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA---AELQ 301 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch---hhhh
Confidence 1 1111 01 111 1122333 57888899999999999988877655422 4788
Q ss_pred EEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCccccccCccCCCCCHHHHHHhhhhccccCCCCCCCcHhHHHHHHhcC
Q psy3966 249 SLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEHLPQNLVQYLESAH 327 (392)
Q Consensus 249 ~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~lp~~~~~~l~~~~ 327 (392)
+|.|..|+|..+... +.++..|+.|+|.+|+|+.-.+..+. ...++. .+.+...++.-+.--.++.+|++..+
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-~~~~l~-----~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-TLFSLS-----TLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc-ccceee-----eeehccCcccCccchHHHHHHHhhCC
Confidence 999999998877654 45588899999999998754333221 112222 23344455556666667788888877
Q ss_pred CCCCCCcCccccc
Q psy3966 328 HCVNPKCKGVFFD 340 (392)
Q Consensus 328 ~~~~~~~~~~~~~ 340 (392)
....|.|..+.+-
T Consensus 376 ~~~~~~Cq~p~~~ 388 (498)
T KOG4237|consen 376 VVGNPRCQSPGFV 388 (498)
T ss_pred CCCCCCCCCCchh
Confidence 7778888876553
No 22
>KOG4237|consensus
Probab=99.64 E-value=8.2e-18 Score=150.95 Aligned_cols=246 Identities=26% Similarity=0.356 Sum_probs=186.1
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccC-CcCCcCCcccc-
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSN-NRITHLPQAIT- 99 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~-n~l~~l~~~~~- 99 (392)
.-++|+|..|.|+. ++... | +.+++|+.|||++|+|+.| |++|.+++.|..|-+.+ |+|+.+|...+
T Consensus 68 ~tveirLdqN~I~~--iP~~a-------F-~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS--IPPGA-------F-KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cceEEEeccCCccc--CChhh-------c-cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 45789999999764 23222 2 5678999999999999965 66788998887766666 99999999887
Q ss_pred -CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc-cccCCcCCcEEECCCCCCC---cC----------
Q psy3966 100 -NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLN---HV---------- 164 (392)
Q Consensus 100 -~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~---~l---------- 164 (392)
+..++.|.+.-|++.- ...+.+..++++..|.+..|.+..++. .+..+..++++.+..|.+- .+
T Consensus 138 gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 8889999998888874 556788999999999999999998877 5667888999988887631 11
Q ss_pred chhhcCCCC----------------------ccEE--Ecc-CCCCc-ccc-hhhcCCcCCCEEEccCCCCCCcch-hhhC
Q psy3966 165 PREINKLCK----------------------LHVL--SLG-GNSLT-DIP-DTFGDLYQLEALILSDNQLESLPA-SISN 216 (392)
Q Consensus 165 ~~~l~~~~~----------------------L~~L--~l~-~n~l~-~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~ 216 (392)
|..++.... ++.+ .++ .+... .-| ..|..+++|+.|++++|+|+.+.+ +|..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 111111111 1111 011 11111 122 357899999999999999998865 7999
Q ss_pred CcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCC-CccccCCCCCCEEeCcCCCCcc
Q psy3966 217 LKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL-PTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 217 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
...+++|.|..|++..+...++. ....|+.|+|.+|+|+.+ |..+..+..|.+|++-.|++..
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~---~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQ---GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhh---ccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 99999999999999887766554 335899999999999966 4556668999999999999864
No 23
>KOG0532|consensus
Probab=99.60 E-value=2.9e-17 Score=153.68 Aligned_cols=212 Identities=33% Similarity=0.511 Sum_probs=169.7
Q ss_pred EEEccCCCCCCCCccc--cCCCCCCEEEccCCcCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC
Q psy3966 60 TLLLYHNNLSFFPDNA--SKFTNLRSLDLSNNRITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136 (392)
Q Consensus 60 ~L~L~~n~l~~i~~~l--~~l~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 136 (392)
+|.|++-++..+|..- -.+..-...|++.|++..+|..+. +..|+.+.+..|.+. .+|..+.++..|+.|+++.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccc
Confidence 4667777777665433 345556778999999999998887 788888888888886 67888888899999999999
Q ss_pred CCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhC
Q psy3966 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISN 216 (392)
Q Consensus 137 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~ 216 (392)
+++.+|..+..++ |+.|-+++|+++.+|+.++...+|..|+.+.|.+..+|..++.+.+|+.|.+..|++..+|+.+..
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence 9988888877765 788888888888888888888888888888888888888888888888888888888888887775
Q ss_pred CcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccC---CCCCCEEeCcCCC
Q psy3966 217 LKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT---LKCLSELSLRDNP 279 (392)
Q Consensus 217 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~---l~~L~~L~l~~N~ 279 (392)
+ .|..||+++|++..+|..+..+. .|++|-|.+|.+.+=|..+.. ..--++|+..-++
T Consensus 211 L-pLi~lDfScNkis~iPv~fr~m~----~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISYLPVDFRKMR----HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-ceeeeecccCceeecchhhhhhh----hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 5 48888888888888888887776 788888888888877765533 3445677777664
No 24
>KOG1909|consensus
Probab=99.56 E-value=4.5e-16 Score=137.96 Aligned_cols=244 Identities=21% Similarity=0.254 Sum_probs=153.2
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC----CCCcc-------ccCCCCCCEEEccC
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS----FFPDN-------ASKFTNLRSLDLSN 88 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~----~i~~~-------l~~l~~L~~L~Ls~ 88 (392)
.+.+++.||||+|.|..+........+. ..++|+..++++--.. .+|+. +..+++|++||||+
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~------~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLA------SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHh------hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4567889999999987665554444332 2357888888765332 44443 35667899999999
Q ss_pred CcCC--cCC---cccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCC
Q psy3966 89 NRIT--HLP---QAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN 162 (392)
Q Consensus 89 n~l~--~l~---~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~ 162 (392)
|-+. .++ ..+. +..|++|++.+|.+... -...++ ..|..|. ......+-+.|+.+...+|++.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~--~al~~l~--------~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLG--RALFELA--------VNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHH--HHHHHHH--------HHhccCCCcceEEEEeeccccc
Confidence 8877 222 1222 56666677766665421 001111 0111111 0112233456777777777766
Q ss_pred c-----CchhhcCCCCccEEEccCCCCc-----ccchhhcCCcCCCEEEccCCCCC-----CcchhhhCCcccceeeccC
Q psy3966 163 H-----VPREINKLCKLHVLSLGGNSLT-----DIPDTFGDLYQLEALILSDNQLE-----SLPASISNLKMLKSLLLHN 227 (392)
Q Consensus 163 ~-----l~~~l~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~ 227 (392)
. +...+...+.|+.+.+..|.+. .+...+..+++|+.|||.+|-++ .+...+..+++|+.+++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 3 3345666777888888888776 12356778888888888888777 3445667777888888888
Q ss_pred CcCCC--CChhhHhhhcccccCcEEEccCCCCC-----CCCccccCCCCCCEEeCcCCCC
Q psy3966 228 NKLRT--LPTEIITLKCLSEKLKSLLLHNNKLR-----TLPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 228 n~l~~--~~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l 280 (392)
|.+.. .......+....++|+.|.+.+|.|+ .+...+...+.|+.|+|++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88762 22233344445578888888888886 2334455678888899999988
No 25
>KOG0532|consensus
Probab=99.55 E-value=5.6e-16 Score=145.17 Aligned_cols=199 Identities=30% Similarity=0.390 Sum_probs=171.3
Q ss_pred CCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEE
Q psy3966 53 KKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVF 131 (392)
Q Consensus 53 ~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 131 (392)
-.+..-...||+.|++..+|..+..+..|+.+.|.+|.+..+|..+. +..|++++++.|++. .+|..+..|+ |+.|
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeE
Confidence 34456678899999999999999889999999999999999999988 888999999999987 5777776665 8999
Q ss_pred eccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcc
Q psy3966 132 NLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP 211 (392)
Q Consensus 132 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~ 211 (392)
-+++|+++.+|..++...+|..|+.+.|.+..+|..++.+.+|+.|.+..|++..+|+.+. .-.|..||++.|++..+|
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLP 227 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecc
Confidence 9999999999999998899999999999999999999999999999999999999998887 446889999999999999
Q ss_pred hhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC
Q psy3966 212 ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 212 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 256 (392)
-.|.+|+.|++|-|.+|.+..=|..+...- ..-=.++|+.+-++
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kG-kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQICEKG-KVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHHHhcc-ceeeeeeecchhcc
Confidence 999999999999999999998777765432 11134667777663
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.51 E-value=1.5e-14 Score=138.75 Aligned_cols=195 Identities=38% Similarity=0.540 Sum_probs=116.8
Q ss_pred EEEccCCcCC-cCCccccCccchhhhhhcCCCCCCCCCccCCCCC-CCcEEeccCCCCcccCccccCCcCCcEEECCCCC
Q psy3966 83 SLDLSNNRIT-HLPQAITNFPLSTLIARNNLLTAESLPKDMSNLK-NLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNS 160 (392)
Q Consensus 83 ~L~Ls~n~l~-~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~ 160 (392)
.++++.|.+. .+........++.+++.+|.++ .++....... +|+.|++++|.+..++..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~--~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT--DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc--cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3455555542 2222222344555555555554 3444444442 6666666666666665556666666666666666
Q ss_pred CCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhh
Q psy3966 161 LNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITL 240 (392)
Q Consensus 161 l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 240 (392)
+..+|......+.|+.|++++|++..+|........|+++.+++|.+..++..+..+.++..+.+.+|++..++..+..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 66666555566666667777777666666555555667777777655555555666666666666666666544444433
Q ss_pred hcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcccc
Q psy3966 241 KCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRF 284 (392)
Q Consensus 241 ~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~ 284 (392)
. .++.|++++|.++.++. +....+++.|++++|.+....
T Consensus 255 ~----~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 255 S----NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred c----ccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 2 57777777777776666 666677777777777665443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.50 E-value=2.6e-14 Score=137.07 Aligned_cols=202 Identities=36% Similarity=0.482 Sum_probs=171.8
Q ss_pred EEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCc--cchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCC
Q psy3966 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF--PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137 (392)
Q Consensus 60 ~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 137 (392)
.+++..+.+..-...+..++.++.|++.+|.++.++...... +|+.|++++|.+. .++..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCch
Confidence 578888877543344566688999999999999999988843 8999999999997 455678899999999999999
Q ss_pred CcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCC
Q psy3966 138 LEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217 (392)
Q Consensus 138 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l 217 (392)
+..++......+.|+.|++++|.+..+|........|+++.+++|.+..++..+..+.++..+.+.+|++..++..+..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 99999877688999999999999999988877777899999999987777788899999999999999999888888999
Q ss_pred cccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCC
Q psy3966 218 KMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLK 268 (392)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~ 268 (392)
++++.|++++|.++.++. +... .+++.|++++|.+..++.......
T Consensus 255 ~~l~~L~~s~n~i~~i~~-~~~~----~~l~~L~~s~n~~~~~~~~~~~~~ 300 (394)
T COG4886 255 SNLETLDLSNNQISSISS-LGSL----TNLRELDLSGNSLSNALPLIALLL 300 (394)
T ss_pred cccceecccccccccccc-cccc----CccCEEeccCccccccchhhhccc
Confidence 999999999999998877 4444 389999999999987665554433
No 28
>KOG1259|consensus
Probab=99.39 E-value=6.5e-14 Score=122.02 Aligned_cols=219 Identities=24% Similarity=0.251 Sum_probs=148.5
Q ss_pred CCccEEEccCCC--CC-------CCCccccCCCCCCEEEccCCcCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCC
Q psy3966 56 ENIDTLLLYHNN--LS-------FFPDNASKFTNLRSLDLSNNRITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNL 125 (392)
Q Consensus 56 ~~L~~L~L~~n~--l~-------~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l 125 (392)
..|+.|..++.. +. .+|-.+.-+++|+.+.+|++.-..|-.... -+.|+++.+.+..+.. . ..+-..
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~--~-~~l~pe 258 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD--V-PSLLPE 258 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc--c-ccccch
Confidence 456666655432 11 233344556778888888876555444333 5566666665554432 1 111111
Q ss_pred CCCcEEeccCCCCc--ccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEcc
Q psy3966 126 KNLKVFNLSGNQLE--QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203 (392)
Q Consensus 126 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~ 203 (392)
..+.....+.-... .....+.....|+++|+++|.|+.+.+...-.+.++.|++++|.+..+.. +..+++|++|||+
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS 337 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLS 337 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecc
Confidence 22222111111111 11112233567889999999999888888888999999999999998854 8889999999999
Q ss_pred CCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCC--ccccCCCCCCEEeCcCCCCc
Q psy3966 204 DNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP--TEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 204 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~N~l~ 281 (392)
+|.++.+..+-..+-++++|.+++|.|.++. .+..+. +|..||+++|+|..+. ..++++|.|+.+.+.+|++.
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLY----SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLY----SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhh----hheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999987776677888999999999887553 344444 7999999999998664 57899999999999999997
Q ss_pred cc
Q psy3966 282 IR 283 (392)
Q Consensus 282 ~~ 283 (392)
+.
T Consensus 413 ~~ 414 (490)
T KOG1259|consen 413 GS 414 (490)
T ss_pred cc
Confidence 54
No 29
>KOG1259|consensus
Probab=99.39 E-value=6.3e-14 Score=122.07 Aligned_cols=202 Identities=24% Similarity=0.279 Sum_probs=125.3
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 134 (392)
+++|..+.++.|.-..|-+....-+.|+++...+..+...|..+....+....-..-....+.....+.-...|+++|++
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS 292 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS 292 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence 46788888888866555443344577888888777666554433333332222221111111222233334567777777
Q ss_pred CCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhh
Q psy3966 135 GNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI 214 (392)
Q Consensus 135 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l 214 (392)
+|.|+.+..++.-.|.++.|+++.|.+..+. .+..+++|+.||+++|.++++...-..+-+++.|.|++|.|..+ ..+
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL 370 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGL 370 (490)
T ss_pred ccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhh
Confidence 7777777666666777777777777777663 36677777777777777776655445566777777777777655 346
Q ss_pred hCCcccceeeccCCcCCCCC--hhhHhhhcccccCcEEEccCCCCCCCCc
Q psy3966 215 SNLKMLKSLLLHNNKLRTLP--TEIITLKCLSEKLKSLLLHNNKLRTLPT 262 (392)
Q Consensus 215 ~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~ 262 (392)
..+-+|..||+++|+|..+. ..++.++ .|+.+.+.+|.+..+|+
T Consensus 371 ~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP----CLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSNQIEELDEVNHIGNLP----CLETLRLTGNPLAGSVD 416 (490)
T ss_pred HhhhhheeccccccchhhHHHhccccccc----HHHHHhhcCCCccccch
Confidence 66667777777777776432 2344433 57777777777765554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.38 E-value=5.4e-13 Score=111.08 Aligned_cols=106 Identities=28% Similarity=0.448 Sum_probs=27.2
Q ss_pred CCCcEEeccCCCCcccCcccc-CCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhh-cCCcCCCEEEcc
Q psy3966 126 KNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTF-GDLYQLEALILS 203 (392)
Q Consensus 126 ~~L~~L~l~~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l-~~l~~L~~L~L~ 203 (392)
.++++|++.+|.|+.+. .+. .+.+|+.|++++|.++.+ +.+..++.|++|++++|.++.+.+.+ ..+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 34555555555555443 233 345555555555555555 23445555555555555555554333 235555555555
Q ss_pred CCCCCCcc--hhhhCCcccceeeccCCcCCCC
Q psy3966 204 DNQLESLP--ASISNLKMLKSLLLHNNKLRTL 233 (392)
Q Consensus 204 ~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~~ 233 (392)
+|+|..+. ..+..+++|+.|++.+|+++..
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 55555332 2344555555555555555533
No 31
>KOG3207|consensus
Probab=99.38 E-value=5.5e-14 Score=128.17 Aligned_cols=179 Identities=24% Similarity=0.268 Sum_probs=95.4
Q ss_pred CCCCccEEEccCCCCCCCC--ccccCCCCCCEEEccCCcCCcCCc---ccc-CccchhhhhhcCCCCCCCCCccCCCCCC
Q psy3966 54 KPENIDTLLLYHNNLSFFP--DNASKFTNLRSLDLSNNRITHLPQ---AIT-NFPLSTLIARNNLLTAESLPKDMSNLKN 127 (392)
Q Consensus 54 ~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~Ls~n~l~~l~~---~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 127 (392)
++++|+.+.|.++.+...+ .....|++++.||||+|-+..... ... +++|+.|+++.|.+....-...-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4567888888888877554 355678888888888887663322 222 5556666666655542111111123455
Q ss_pred CcEEeccCCCCc--ccCccccCCcCCcEEECCCCC-CCcCchhhcCCCCccEEEccCCCCcccc--hhhcCCcCCCEEEc
Q psy3966 128 LKVFNLSGNQLE--QFPIQILDIPTLKYLYLGNNS-LNHVPREINKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEALIL 202 (392)
Q Consensus 128 L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L 202 (392)
|+.|.++.|.++ .+..-+..+|+|+.|++..|. +..-.....-+..|++|+|++|.+...+ ...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 666666666655 222233345566666666653 2211111223345566666666655444 23455556666666
Q ss_pred cCCCCCCc--chh-----hhCCcccceeeccCCcCCC
Q psy3966 203 SDNQLESL--PAS-----ISNLKMLKSLLLHNNKLRT 232 (392)
Q Consensus 203 ~~n~l~~l--~~~-----l~~l~~L~~L~L~~n~l~~ 232 (392)
+.+++.++ |+. ...+++|+.|++..|++.+
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 66655532 221 2344555555555555543
No 32
>KOG3207|consensus
Probab=99.37 E-value=3.8e-14 Score=129.17 Aligned_cols=177 Identities=25% Similarity=0.280 Sum_probs=73.4
Q ss_pred CCCccEEEccCCCCCC---CCccccCCCCCCEEEccCCcCCcCCcccc---CccchhhhhhcCCCCCCCCCccCCCCCCC
Q psy3966 55 PENIDTLLLYHNNLSF---FPDNASKFTNLRSLDLSNNRITHLPQAIT---NFPLSTLIARNNLLTAESLPKDMSNLKNL 128 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~---i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 128 (392)
+++++.|||++|-+.. +......+++|+.|+++.|++........ ..+|+.|.++.|.++...+......+|+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4444444444444432 11222344444444554444442111111 34444444444444433333333344455
Q ss_pred cEEeccCCC-CcccCccccCCcCCcEEECCCCCCCcCc--hhhcCCCCccEEEccCCCCccc--chh-----hcCCcCCC
Q psy3966 129 KVFNLSGNQ-LEQFPIQILDIPTLKYLYLGNNSLNHVP--REINKLCKLHVLSLGGNSLTDI--PDT-----FGDLYQLE 198 (392)
Q Consensus 129 ~~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~l~~n~l~~l--~~~-----l~~l~~L~ 198 (392)
+.|++.+|. +..-.....-+..|++|+|++|.+-..+ ...+.++.|..|+++.+.+.++ |+. ....++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 555555442 1111111111334455555555444332 2334444555555555554432 221 23344555
Q ss_pred EEEccCCCCCCcch--hhhCCcccceeeccCCcCC
Q psy3966 199 ALILSDNQLESLPA--SISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 199 ~L~L~~n~l~~l~~--~l~~l~~L~~L~L~~n~l~ 231 (392)
+|+++.|+|.+++. .+..+++|+.|.+..|.+.
T Consensus 305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeecccCccccccccchhhccchhhhhhccccccc
Confidence 55555555543332 2344444455554444443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=1.4e-12 Score=108.66 Aligned_cols=101 Identities=30% Similarity=0.422 Sum_probs=48.9
Q ss_pred CCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhh-cCCCCccEEEccCCCCcccc--hhhcCCcCCCEE
Q psy3966 124 NLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEAL 200 (392)
Q Consensus 124 ~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l-~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L 200 (392)
.+.+|+.|++++|.|+.+. .+..++.|++|++++|.++.+.+.+ ..+++|++|++++|++..+. ..++.+++|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 4678888888888888775 5667888888888888888886555 35788888888888887553 356778888888
Q ss_pred EccCCCCCCcch----hhhCCcccceeec
Q psy3966 201 ILSDNQLESLPA----SISNLKMLKSLLL 225 (392)
Q Consensus 201 ~L~~n~l~~l~~----~l~~l~~L~~L~L 225 (392)
++.+|.++.-+. .+..+|+|+.||-
T Consensus 119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eccCCcccchhhHHHHHHHHcChhheeCC
Confidence 888888874442 4677888888764
No 34
>KOG1909|consensus
Probab=99.29 E-value=2.9e-13 Score=120.30 Aligned_cols=213 Identities=22% Similarity=0.262 Sum_probs=153.0
Q ss_pred CCCCccEEEccCCCCC-----CCCccccCCCCCCEEEccCCcCC----cCCccccCccchhhhhhcCCCCCCCCCccCCC
Q psy3966 54 KPENIDTLLLYHNNLS-----FFPDNASKFTNLRSLDLSNNRIT----HLPQAITNFPLSTLIARNNLLTAESLPKDMSN 124 (392)
Q Consensus 54 ~~~~L~~L~L~~n~l~-----~i~~~l~~l~~L~~L~Ls~n~l~----~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 124 (392)
....++.++|++|.+. .+...+.+.+.|+..++|+-.-. .+|..+. .+.+++..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-----------------~l~~aL~~ 90 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-----------------MLSKALLG 90 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-----------------HHHHHHhc
Confidence 3578999999999987 35566777888999888875322 3333221 12244556
Q ss_pred CCCCcEEeccCCCCc-----ccCccccCCcCCcEEECCCCCCCcCc--------------hhhcCCCCccEEEccCCCCc
Q psy3966 125 LKNLKVFNLSGNQLE-----QFPIQILDIPTLKYLYLGNNSLNHVP--------------REINKLCKLHVLSLGGNSLT 185 (392)
Q Consensus 125 l~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~l~~l~--------------~~l~~~~~L~~L~l~~n~l~ 185 (392)
+++|++|+||.|-+. .+...+.++..|++|+|.+|.+.... .....-+.|+++..++|++.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 778999999998776 22233456888999999999887321 22345678999999999998
Q ss_pred cc-----chhhcCCcCCCEEEccCCCCC--C---cchhhhCCcccceeeccCCcCCCC-ChhhHhhhcccccCcEEEccC
Q psy3966 186 DI-----PDTFGDLYQLEALILSDNQLE--S---LPASISNLKMLKSLLLHNNKLRTL-PTEIITLKCLSEKLKSLLLHN 254 (392)
Q Consensus 186 ~l-----~~~l~~l~~L~~L~L~~n~l~--~---l~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~L~~L~l~~ 254 (392)
.- ...+...+.|+.+.++.|.|. . +...+..+++|+.|||.+|-++.- ...+....+..++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 43 346777899999999999987 2 335789999999999999998832 222333223345899999999
Q ss_pred CCCC-----CCCcccc-CCCCCCEEeCcCCCCccc
Q psy3966 255 NKLR-----TLPTEII-TLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 255 n~l~-----~l~~~l~-~l~~L~~L~l~~N~l~~~ 283 (392)
|.+. .+...+. ..++|+.|.+.+|.++.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d 285 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRD 285 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence 9996 2333333 378999999999999754
No 35
>KOG0531|consensus
Probab=99.21 E-value=1.5e-12 Score=125.43 Aligned_cols=242 Identities=30% Similarity=0.385 Sum_probs=161.9
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT 99 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~ 99 (392)
.+..++.+++..|.+.. + ......+.+++.|++.+|+|..+...+..+++|++|++++|.|+.+...-.
T Consensus 70 ~l~~l~~l~l~~n~i~~------~-----~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK------I-----LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLST 138 (414)
T ss_pred HhHhHHhhccchhhhhh------h-----hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhh
Confidence 44555666666665543 0 001234578888888888888775557778888888888888887776666
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCCCCCCcCchhhcCCCCccEEE
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLS 178 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~ 178 (392)
+..|+.|++.+|.+.. ...+..++.|+.+++++|++..+... ...+.+++.+++.+|.+..+ ..+..+..+..++
T Consensus 139 l~~L~~L~l~~N~i~~---~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISD---ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLS 214 (414)
T ss_pred ccchhhheeccCcchh---ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhh
Confidence 7778888888888864 24455578888888888888866543 45677888888888887765 3334444555557
Q ss_pred ccCCCCcccchhhcCCc--CCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC
Q psy3966 179 LGGNSLTDIPDTFGDLY--QLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 179 l~~n~l~~l~~~l~~l~--~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 256 (392)
+..|.++.+.. +..+. .|+.+++++|++..++..+..+..+..+++.+|.+..+...- ..+.+..+....|.
T Consensus 215 l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~-----~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 215 LLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLE-----RLPKLSELWLNDNK 288 (414)
T ss_pred cccccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccccc-----ccchHHHhccCcch
Confidence 77777775522 22333 378888888888877666777888888888888876443211 11245566666666
Q ss_pred CC---CCC-cc-ccCCCCCCEEeCcCCCCcc
Q psy3966 257 LR---TLP-TE-IITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 257 l~---~l~-~~-l~~l~~L~~L~l~~N~l~~ 282 (392)
+. ... .. ....+.++.+.+.+|++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hcchhhhhccccccccccccccccccCcccc
Confidence 54 222 22 4556778888888887754
No 36
>KOG0531|consensus
Probab=99.11 E-value=5.3e-12 Score=121.56 Aligned_cols=216 Identities=31% Similarity=0.424 Sum_probs=126.6
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEec
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 133 (392)
+..++.+++..|.+..+-..+..+++|+.|++.+|.|..+...+. +.+|++|++++|.|+. -..+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~---i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK---LEGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc---ccchhhccchhhhee
Confidence 356677777888777654556777888888888888887766333 6777777777777664 133445555777777
Q ss_pred cCCCCcccCccccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcch
Q psy3966 134 SGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA 212 (392)
Q Consensus 134 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~ 212 (392)
++|.|+.+. .+..++.|+.+++++|.+..+... ...+.+++.+.+.+|.+..+. .+..+..+..+++..|.++.+..
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC
Confidence 777766554 333466667777777776665432 455666666677666666542 23333444444666666654321
Q ss_pred hhhCCc--ccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCc
Q psy3966 213 SISNLK--MLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 213 ~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
+..+. .|+.+++++|.+..++..+..+ ..+..+++.+|.+..+. .+.....+..+....|++.
T Consensus 226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~----~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 226 -LNELVMLHLRELYLSGNRISRSPEGLENL----KNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred -cccchhHHHHHHhcccCcccccccccccc----ccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence 22222 2666777777666554333222 25666666666665432 1333344455555555543
No 37
>KOG2982|consensus
Probab=98.88 E-value=4.1e-10 Score=98.43 Aligned_cols=206 Identities=17% Similarity=0.128 Sum_probs=135.9
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC---CCCccccCCCCCCEEEccCCcCCcC
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS---FFPDNASKFTNLRSLDLSNNRITHL 94 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~---~i~~~l~~l~~L~~L~Ls~n~l~~l 94 (392)
.+..+.++.|-+.++.|..++....+.. ....++++||.+|.|+ ++...+.++|.|++|+++.|.+...
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~--------~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGS--------SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHH--------HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 3344556688888888887766665553 5678999999999998 4555568999999999999998732
Q ss_pred Ccc--ccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccC--cc-ccC-CcCCcEEECCCCCCC---cCc
Q psy3966 95 PQA--ITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFP--IQ-ILD-IPTLKYLYLGNNSLN---HVP 165 (392)
Q Consensus 95 ~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~-l~~-l~~L~~L~l~~n~l~---~l~ 165 (392)
-.. +...+|+++.+.+..+........+..+|.+++|+++.|++..+- +. ... .+.++++....|... .+-
T Consensus 113 I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~ 192 (418)
T KOG2982|consen 113 IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN 192 (418)
T ss_pred cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH
Confidence 222 336778888888888776666667778888888888888655221 11 111 234555555555433 111
Q ss_pred hhhcCCCCccEEEccCCCCcccc--hhhcCCcCCCEEEccCCCCCCcc--hhhhCCcccceeeccCCcCC
Q psy3966 166 REINKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEALILSDNQLESLP--ASISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 166 ~~l~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~l~ 231 (392)
.--..++++..+.+..|.+.... ......+.+..|+|+.++|.+.. ..+..++.|..|.++++.+.
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 11233566777777777666442 23445566667777777777543 35677777777777777665
No 38
>KOG4658|consensus
Probab=98.84 E-value=1.8e-09 Score=111.48 Aligned_cols=206 Identities=29% Similarity=0.396 Sum_probs=143.1
Q ss_pred cCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCC--CCCCCCCccCCCCCCCcEEeccCC-CCcccCccccCCcCCc
Q psy3966 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNL--LTAESLPKDMSNLKNLKVFNLSGN-QLEQFPIQILDIPTLK 152 (392)
Q Consensus 76 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~ 152 (392)
......+...+-+|.+..++....++.|++|.+..|. +.. .....|..++.|++||+++| .+..+|..++.+-+|+
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3446677888888888777777777778888887775 321 23345778999999999987 5678999999999999
Q ss_pred EEECCCCCCCcCchhhcCCCCccEEEccCCCCc-ccchhhcCCcCCCEEEccCCCCC---CcchhhhCCcccceeeccCC
Q psy3966 153 YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE---SLPASISNLKMLKSLLLHNN 228 (392)
Q Consensus 153 ~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~L~~n 228 (392)
+|++++..+..+|..+.++..|.+|++..+.-. .+|.....+++|++|.+...... ..-..+.++.+|+.+.....
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 999999999999999999999999999887654 44555666999999998776533 11233455566666655443
Q ss_pred cCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccc
Q psy3966 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
.. .+-..+..+.......+.+.+.++.....+..+..+.+|+.|.+.++.+...
T Consensus 679 s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 679 SV-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hh-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchh
Confidence 32 1111122222122233445544555556677788889999999999887643
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.83 E-value=1.2e-09 Score=94.44 Aligned_cols=166 Identities=20% Similarity=0.209 Sum_probs=78.8
Q ss_pred CCCCCCCcEEeccCCCCc-ccCc----cccCCcCCcEEECCCCCCCcCch--------------hhcCCCCccEEEccCC
Q psy3966 122 MSNLKNLKVFNLSGNQLE-QFPI----QILDIPTLKYLYLGNNSLNHVPR--------------EINKLCKLHVLSLGGN 182 (392)
Q Consensus 122 ~~~l~~L~~L~l~~n~l~-~l~~----~l~~l~~L~~L~l~~n~l~~l~~--------------~l~~~~~L~~L~l~~n 182 (392)
+..||+|+..++|.|-+. ..|+ .+.+.+.|.+|.+++|.+..+.. ....-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 334555555555555444 2222 22334455555555555542211 1123455666666666
Q ss_pred CCcccch-----hhcCCcCCCEEEccCCCCC--Ccc----hhhhCCcccceeeccCCcCCCCChh-hHhhhcccccCcEE
Q psy3966 183 SLTDIPD-----TFGDLYQLEALILSDNQLE--SLP----ASISNLKMLKSLLLHNNKLRTLPTE-IITLKCLSEKLKSL 250 (392)
Q Consensus 183 ~l~~l~~-----~l~~l~~L~~L~L~~n~l~--~l~----~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~L~~L 250 (392)
++...+. .+..-..|+.+.+..|.|. .+. ..+..+.+|+.||+..|-++..... +....+.-+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6654332 1222245666666666665 111 1234456666666666666522221 11111222345666
Q ss_pred EccCCCCCC--CCcc---cc--CCCCCCEEeCcCCCCccccccC
Q psy3966 251 LLHNNKLRT--LPTE---II--TLKCLSELSLRDNPLVIRFVSD 287 (392)
Q Consensus 251 ~l~~n~l~~--l~~~---l~--~l~~L~~L~l~~N~l~~~~~~~ 287 (392)
.+.+|-++. .... +. ..++|..|...+|...+.++.+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 666666541 1111 11 2466667777777665554443
No 40
>KOG1859|consensus
Probab=98.81 E-value=6.6e-11 Score=114.51 Aligned_cols=101 Identities=33% Similarity=0.360 Sum_probs=40.1
Q ss_pred CcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCC
Q psy3966 128 LKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQL 207 (392)
Q Consensus 128 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l 207 (392)
|.+.+.++|.+..+..++.-++.++.|+|++|+++.+. .+..+++|++|||++|.++.+|..-..-..|+.|.+++|.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 33444444444433333333444444444444444332 34444444444444444444432111111244444444444
Q ss_pred CCcchhhhCCcccceeeccCCcC
Q psy3966 208 ESLPASISNLKMLKSLLLHNNKL 230 (392)
Q Consensus 208 ~~l~~~l~~l~~L~~L~L~~n~l 230 (392)
+.+ ..+.++.+|+.||++.|-|
T Consensus 245 ~tL-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 245 TTL-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred Hhh-hhHHhhhhhhccchhHhhh
Confidence 433 2233444444444444433
No 41
>KOG1859|consensus
Probab=98.79 E-value=1.7e-10 Score=111.77 Aligned_cols=132 Identities=32% Similarity=0.352 Sum_probs=93.1
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEc
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSL 179 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l 179 (392)
...|.+.+.++|.+. .+..++.-++.|+.|+|++|+++.+. .+..+++|++|||++|.+..+|..-..-..|+.|.+
T Consensus 163 Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 344555666666665 34455666778888888888887665 666788888888888888877654333345888888
Q ss_pred cCCCCcccchhhcCCcCCCEEEccCCCCCCcch--hhhCCcccceeeccCCcCCCCCh
Q psy3966 180 GGNSLTDIPDTFGDLYQLEALILSDNQLESLPA--SISNLKMLKSLLLHNNKLRTLPT 235 (392)
Q Consensus 180 ~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~~~~ 235 (392)
++|.++.+ ..+.++.+|+.||+++|-|....+ -+..+..|+.|+|.+|.+..-|.
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 88888876 346778888888888887774432 34556778888888888775544
No 42
>KOG4658|consensus
Probab=98.79 E-value=4e-09 Score=108.99 Aligned_cols=173 Identities=26% Similarity=0.339 Sum_probs=95.7
Q ss_pred CCccEEEccCCC--CCCCCcc-ccCCCCCCEEEccCCc-CCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcE
Q psy3966 56 ENIDTLLLYHNN--LSFFPDN-ASKFTNLRSLDLSNNR-ITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKV 130 (392)
Q Consensus 56 ~~L~~L~L~~n~--l~~i~~~-l~~l~~L~~L~Ls~n~-l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 130 (392)
++|++|-+.+|. +..++.. |..++.|++|||++|. +..+|..++ +-+|++|+++++.+. .+|..+.++..|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhhe
Confidence 467777777775 4555443 5667777777777665 567777777 777777777777776 57777777777777
Q ss_pred EeccCCCCc-ccCccccCCcCCcEEECCCCCCC---cCchhhcCCCCccEEEccCCCCcccchhhcCCcCCC----EEEc
Q psy3966 131 FNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN---HVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLE----ALIL 202 (392)
Q Consensus 131 L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~---~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~----~L~L 202 (392)
|++..+.-. .++.....+++|++|.+...... ..-..+..+.+|+.+....... .+-..+..+..|. .+.+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh
Confidence 777766433 33333334777777777554422 1123334444454444433222 1111111122111 2222
Q ss_pred cCCCCCCcchhhhCCcccceeeccCCcCC
Q psy3966 203 SDNQLESLPASISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 203 ~~n~l~~l~~~l~~l~~L~~L~L~~n~l~ 231 (392)
.++.....+..+..+.+|+.|.+.++.+.
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCc
Confidence 22333333444555666666666666654
No 43
>KOG4579|consensus
Probab=98.74 E-value=1.4e-09 Score=84.48 Aligned_cols=106 Identities=25% Similarity=0.334 Sum_probs=47.0
Q ss_pred CccEEEccCCCCcccchhhcC-CcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEE
Q psy3966 173 KLHVLSLGGNSLTDIPDTFGD-LYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLL 251 (392)
Q Consensus 173 ~L~~L~l~~n~l~~l~~~l~~-l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 251 (392)
.|+..++++|.+..+|+.|.. .+.++.|++++|.|+++|..+..++.|+.++++.|.+...|.-+..+. ++-.|+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~----~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLI----KLDMLD 129 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHH----hHHHhc
Confidence 344444444444444443322 234444444444444444444444445555555554444444444332 444444
Q ss_pred ccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 252 LHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 252 l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
..+|.+..+|..+..-...-..++.++++.+
T Consensus 130 s~~na~~eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 130 SPENARAEIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred CCCCccccCcHHHhccccHHHHHhcCCcccc
Confidence 4444444444433322222333344455543
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=5.5e-08 Score=98.20 Aligned_cols=106 Identities=25% Similarity=0.403 Sum_probs=76.8
Q ss_pred CccEEEccCCCCc-ccchhhcCCcCCCEEEccCCCCC-CcchhhhCCcccceeeccCCcCC-CCChhhHhhhcccccCcE
Q psy3966 173 KLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITLKCLSEKLKS 249 (392)
Q Consensus 173 ~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~L~~ 249 (392)
.++.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+. +|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~----~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT----SLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC----CCCE
Confidence 3667778777777 56777777888888888888776 67777777888888888888777 5666665544 7888
Q ss_pred EEccCCCCC-CCCccccC-CCCCCEEeCcCCCCcc
Q psy3966 250 LLLHNNKLR-TLPTEIIT-LKCLSELSLRDNPLVI 282 (392)
Q Consensus 250 L~l~~n~l~-~l~~~l~~-l~~L~~L~l~~N~l~~ 282 (392)
|++++|.++ .+|..+.. ..++..+++.+|+..+
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 888888776 67776665 3456677788776544
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=1e-08 Score=70.21 Aligned_cols=57 Identities=49% Similarity=0.702 Sum_probs=31.3
Q ss_pred CccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCc
Q psy3966 173 KLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNK 229 (392)
Q Consensus 173 ~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~ 229 (392)
+|++|++++|+++.+| ..|..+++|++|++++|.++.++. .|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555554 244555555555555555555443 45555555555555554
No 46
>PLN03150 hypothetical protein; Provisional
Probab=98.71 E-value=4.9e-08 Score=98.57 Aligned_cols=87 Identities=29% Similarity=0.452 Sum_probs=58.6
Q ss_pred CCEEEccCCCCC-CcchhhhCCcccceeeccCCcCC-CCChhhHhhhcccccCcEEEccCCCCC-CCCccccCCCCCCEE
Q psy3966 197 LEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSEL 273 (392)
Q Consensus 197 L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L 273 (392)
++.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+. +|+.|++++|+++ .+|..+..+++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~----~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT----SLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCC----CCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 566777777766 56666777777777777777776 5555555443 6777777777775 566667777777777
Q ss_pred eCcCCCCccccccC
Q psy3966 274 SLRDNPLVIRFVSD 287 (392)
Q Consensus 274 ~l~~N~l~~~~~~~ 287 (392)
++++|.+++.++..
T Consensus 496 ~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 496 NLNGNSLSGRVPAA 509 (623)
T ss_pred ECcCCcccccCChH
Confidence 77777776665443
No 47
>KOG2120|consensus
Probab=98.69 E-value=7e-10 Score=97.05 Aligned_cols=173 Identities=24% Similarity=0.214 Sum_probs=87.1
Q ss_pred ccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CCCccccCCCCCCEEEccCCc-CCcCCccccCc
Q psy3966 24 IKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNR-ITHLPQAITNF 101 (392)
Q Consensus 24 L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~Ls~n~-l~~l~~~~~~~ 101 (392)
|++||||...++...+...+. .+.+|+.|.|.++++. .+...+++..+|+.||++.+. ++..
T Consensus 187 lq~lDLS~s~it~stl~~iLs---------~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n------- 250 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILS---------QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN------- 250 (419)
T ss_pred hHHhhcchhheeHHHHHHHHH---------HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-------
Confidence 555555555555444333332 3455555555555555 343444555555555555543 3321
Q ss_pred cchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc--ccCccccC-CcCCcEEECCCCC--C--CcCchhhcCCCCc
Q psy3966 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE--QFPIQILD-IPTLKYLYLGNNS--L--NHVPREINKLCKL 174 (392)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~l~~-l~~L~~L~l~~n~--l--~~l~~~l~~~~~L 174 (392)
...-.+.+|+.|..|+++.|.+. .+...+.. -++|+.|+++++. + ..+..-..++++|
T Consensus 251 ---------------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l 315 (419)
T KOG2120|consen 251 ---------------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNL 315 (419)
T ss_pred ---------------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCce
Confidence 11223445556666666666544 11111111 3456666666652 1 1232234566677
Q ss_pred cEEEccCCCCc--ccchhhcCCcCCCEEEccCCCCCCcch---hhhCCcccceeeccCC
Q psy3966 175 HVLSLGGNSLT--DIPDTFGDLYQLEALILSDNQLESLPA---SISNLKMLKSLLLHNN 228 (392)
Q Consensus 175 ~~L~l~~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~---~l~~l~~L~~L~L~~n 228 (392)
.+||++.|..- ..-..|..++.|++|.++.|..- +|. .+...|+|.+|++.++
T Consensus 316 ~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 316 VHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 77777665432 22234566667777777766432 122 3455677777776665
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=4.9e-09 Score=90.69 Aligned_cols=235 Identities=19% Similarity=0.227 Sum_probs=149.0
Q ss_pred cccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC----CCC-------ccccCCCCCCEEEccCC
Q psy3966 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS----FFP-------DNASKFTNLRSLDLSNN 89 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~----~i~-------~~l~~l~~L~~L~Ls~n 89 (392)
+..++.+|||+|.|..+.+......+. .-.+|+..+++.-..+ .++ ..+.+|++|+..+||.|
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia------~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIA------NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHh------hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 456677777777776665554444332 2356666666654332 222 23356677777777777
Q ss_pred cCC-cCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc--------------cccCCcCCcEE
Q psy3966 90 RIT-HLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI--------------QILDIPTLKYL 154 (392)
Q Consensus 90 ~l~-~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--------------~l~~l~~L~~L 154 (392)
.+. ..|+ .+-+.++.-..|.+|.+++|.+..+.. ...+-|.|+.+
T Consensus 103 Afg~~~~e--------------------~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 103 AFGSEFPE--------------------ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred ccCcccch--------------------HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 665 2221 223456677899999999998873321 12346889999
Q ss_pred ECCCCCCCcCchh-----hcCCCCccEEEccCCCCcc--c----chhhcCCcCCCEEEccCCCCCC-----cchhhhCCc
Q psy3966 155 YLGNNSLNHVPRE-----INKLCKLHVLSLGGNSLTD--I----PDTFGDLYQLEALILSDNQLES-----LPASISNLK 218 (392)
Q Consensus 155 ~l~~n~l~~l~~~-----l~~~~~L~~L~l~~n~l~~--l----~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~ 218 (392)
....|++...+.. +..-..|+++.+..|.|.. + -..+..+.+|+.||+..|.++. +...+..++
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 9999998855432 3344689999999999872 2 1235678899999999998882 334567778
Q ss_pred ccceeeccCCcCCC--CChhhHhhh-cccccCcEEEccCCCCC--C-----CCccc-cCCCCCCEEeCcCCCCc
Q psy3966 219 MLKSLLLHNNKLRT--LPTEIITLK-CLSEKLKSLLLHNNKLR--T-----LPTEI-ITLKCLSELSLRDNPLV 281 (392)
Q Consensus 219 ~L~~L~L~~n~l~~--~~~~~~~~~-~~~~~L~~L~l~~n~l~--~-----l~~~l-~~l~~L~~L~l~~N~l~ 281 (392)
.|+.|.+..|-++. ....+..+. ...++|..|...+|.+. . ++... ..++-|..|.+.+|.+.
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 89999999998872 222221111 12358899999988764 1 22211 12555666666666654
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.67 E-value=1.8e-08 Score=69.02 Aligned_cols=58 Identities=43% Similarity=0.628 Sum_probs=33.8
Q ss_pred CCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCC
Q psy3966 150 TLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207 (392)
Q Consensus 150 ~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l 207 (392)
+|++|++++|+++.+|. .+..+++|++|++++|.++.++ ..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45556666666655543 3455666666666666666553 3556666666666666653
No 50
>KOG4579|consensus
Probab=98.58 E-value=5.3e-09 Score=81.32 Aligned_cols=113 Identities=23% Similarity=0.322 Sum_probs=92.1
Q ss_pred CCcEEeccCCCCcccCcc---ccCCcCCcEEECCCCCCCcCchhhc-CCCCccEEEccCCCCcccchhhcCCcCCCEEEc
Q psy3966 127 NLKVFNLSGNQLEQFPIQ---ILDIPTLKYLYLGNNSLNHVPREIN-KLCKLHVLSLGGNSLTDIPDTFGDLYQLEALIL 202 (392)
Q Consensus 127 ~L~~L~l~~n~l~~l~~~---l~~l~~L~~L~l~~n~l~~l~~~l~-~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L 202 (392)
.+..++++.|.+-.+++. +.....|+..++++|.+..+|+.+. +++.++.|++++|.+.++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 456678888877655443 3445677788999999998888775 456889999999999999988999999999999
Q ss_pred cCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHh
Q psy3966 203 SDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIIT 239 (392)
Q Consensus 203 ~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 239 (392)
+.|.+...|+.+..+.++-.|+..+|.+..++..++.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~ 144 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFY 144 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhc
Confidence 9999998888888888999999999998888877443
No 51
>KOG2120|consensus
Probab=98.54 E-value=1.9e-09 Score=94.39 Aligned_cols=153 Identities=22% Similarity=0.172 Sum_probs=76.2
Q ss_pred CCcEEeccCCCCc--ccCccccCCcCCcEEECCCCCCC-cCchhhcCCCCccEEEccCC-CCccc--chhhcCCcCCCEE
Q psy3966 127 NLKVFNLSGNQLE--QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKLHVLSLGGN-SLTDI--PDTFGDLYQLEAL 200 (392)
Q Consensus 127 ~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~n-~l~~l--~~~l~~l~~L~~L 200 (392)
.|+++|+++..|+ .+..-+..+.+|+.|.+.++++. .+...+.+..+|+.|+++.+ .+++. .-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666666555 23323334556666666666655 34445555566666666654 23321 1234556666666
Q ss_pred EccCCCCC-Ccch-hhhC-CcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC-CC-CCCccccCCCCCCEEeC
Q psy3966 201 ILSDNQLE-SLPA-SISN-LKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK-LR-TLPTEIITLKCLSELSL 275 (392)
Q Consensus 201 ~L~~n~l~-~l~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~l~~~l~~l~~L~~L~l 275 (392)
++++|.+. +... .+.+ -++|+.|+++++.-.-....+..+...+++|..|||++|. ++ .....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66666554 1111 1111 1355566666653211111333333444566666666554 22 33344555666666666
Q ss_pred cCCC
Q psy3966 276 RDNP 279 (392)
Q Consensus 276 ~~N~ 279 (392)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 6664
No 52
>KOG2982|consensus
Probab=98.45 E-value=4.9e-08 Score=85.65 Aligned_cols=56 Identities=27% Similarity=0.264 Sum_probs=24.8
Q ss_pred cEEEccCCCCCCCCc--cc-cCCCCCCEEEccCCcCCc---CCcccc-CccchhhhhhcCCCC
Q psy3966 59 DTLLLYHNNLSFFPD--NA-SKFTNLRSLDLSNNRITH---LPQAIT-NFPLSTLIARNNLLT 114 (392)
Q Consensus 59 ~~L~L~~n~l~~i~~--~l-~~l~~L~~L~Ls~n~l~~---l~~~~~-~~~L~~L~l~~n~~~ 114 (392)
+-+.+.++.|....+ .+ ..++.++.+||.+|.|+. |...+. ++.|++|+++.|.+.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 344455555542211 12 344556666666666552 222222 444444444444443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.39 E-value=3.1e-07 Score=57.87 Aligned_cols=41 Identities=34% Similarity=0.565 Sum_probs=34.1
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCc
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ 96 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~ 96 (392)
++|++|++++|+|+.+|..++++++|++|++++|+++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999999998878999999999999999987654
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=7.9e-07 Score=83.29 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=20.8
Q ss_pred cccceeeccCCcCCCCChhhHhhhcccccCcEEEccCC
Q psy3966 218 KMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255 (392)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 255 (392)
++|++|++++|....+|..+ +.+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~L------P~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKL------PESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccc------cccCcEEEeccc
Confidence 46788888877765544322 237888887766
No 55
>KOG1644|consensus
Probab=98.30 E-value=9.7e-07 Score=73.45 Aligned_cols=81 Identities=27% Similarity=0.423 Sum_probs=34.4
Q ss_pred CCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcC-CcCCCEEEccCCCCCCcch--hhhCCcccceeecc
Q psy3966 150 TLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGD-LYQLEALILSDNQLESLPA--SISNLKMLKSLLLH 226 (392)
Q Consensus 150 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~-l~~L~~L~L~~n~l~~l~~--~l~~l~~L~~L~L~ 226 (392)
+...+|+++|.+..+ ..+..++.|.+|.+++|+|+.|.+.+.. +++|..|.+.+|.|..+.+ -+..+|+|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 334444444444433 2334444444444444444444333322 2334444444444443321 23334444444444
Q ss_pred CCcCC
Q psy3966 227 NNKLR 231 (392)
Q Consensus 227 ~n~l~ 231 (392)
+|+++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 44443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.29 E-value=7.6e-07 Score=56.09 Aligned_cols=38 Identities=45% Similarity=0.637 Sum_probs=18.9
Q ss_pred CCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCC
Q psy3966 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233 (392)
Q Consensus 196 ~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~ 233 (392)
+|++|++++|+|+.+|..+.++++|+.|++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555554455555555555555555443
No 57
>KOG1644|consensus
Probab=98.26 E-value=1.9e-06 Score=71.80 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=44.2
Q ss_pred CCCCCCCcEEeccCCCCcccCccccC-CcCCcEEECCCCCCCcCc--hhhcCCCCccEEEccCCCCcccch----hhcCC
Q psy3966 122 MSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVP--REINKLCKLHVLSLGGNSLTDIPD----TFGDL 194 (392)
Q Consensus 122 ~~~l~~L~~L~l~~n~l~~l~~~l~~-l~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~l~~n~l~~l~~----~l~~l 194 (392)
+..++.|.+|.+++|+|+.+.+.+.. +++|+.|.+.+|.+..+. ..+..+++|++|.+-+|.++.-.. .+..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 34556666666666666666555544 455666666666655431 234455566666666665553321 23344
Q ss_pred cCCCEEEccC
Q psy3966 195 YQLEALILSD 204 (392)
Q Consensus 195 ~~L~~L~L~~ 204 (392)
++|+.||.++
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 4555554443
No 58
>KOG3665|consensus
Probab=98.18 E-value=1.1e-06 Score=88.93 Aligned_cols=132 Identities=20% Similarity=0.348 Sum_probs=71.7
Q ss_pred CCCcEEeccCCCCc--ccCccccC-CcCCcEEECCCCCCC--cCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEE
Q psy3966 126 KNLKVFNLSGNQLE--QFPIQILD-IPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEAL 200 (392)
Q Consensus 126 ~~L~~L~l~~n~l~--~l~~~l~~-l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 200 (392)
.+|++|++++...- ..+..++. +|+|+.|.+++-.+. ++.....++++|..||+++.+++.+ ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666777664322 33334443 677777777665544 2223345666777777777766666 456666677766
Q ss_pred EccCCCCCCcc--hhhhCCcccceeeccCCcCCCCC---hhhHhhhcccccCcEEEccCCCCC
Q psy3966 201 ILSDNQLESLP--ASISNLKMLKSLLLHNNKLRTLP---TEIITLKCLSEKLKSLLLHNNKLR 258 (392)
Q Consensus 201 ~L~~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~~L~~L~l~~n~l~ 258 (392)
.+.+=.+..-. ..+.++++|+.||+|.......+ ..........|.|+.||.++..+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66665555322 24566677777777766544322 111222223345555555555443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=8.3e-06 Score=76.54 Aligned_cols=133 Identities=18% Similarity=0.316 Sum_probs=93.6
Q ss_pred CCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCC-CCCcCchhhcCCCCccEEEccCC-CCcccchhhcCCcCCCE
Q psy3966 122 MSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNN-SLNHVPREINKLCKLHVLSLGGN-SLTDIPDTFGDLYQLEA 199 (392)
Q Consensus 122 ~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~l~~~~~L~~L~l~~n-~l~~l~~~l~~l~~L~~ 199 (392)
+..+.+++.|++++|.++.+|. + .++|++|.++++ .++.+|..+. .+|++|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence 3456889999999999998882 2 346999999885 5667776553 58999999998 6666664 5778
Q ss_pred EEccCCCCC---CcchhhhCCcccceeeccCCc-CC--CCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEE
Q psy3966 200 LILSDNQLE---SLPASISNLKMLKSLLLHNNK-LR--TLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSEL 273 (392)
Q Consensus 200 L~L~~n~l~---~l~~~l~~l~~L~~L~L~~n~-l~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L 273 (392)
|+++.+... .+|. +|+.|.+.+++ .. .++. ..+++|+.|++++|....+|..+. .+|+.|
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~------~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L 182 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN------LISPSLKTLSLTGCSNIILPEKLP--ESLQSI 182 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheecccccccccccccc------ccCCcccEEEecCCCcccCccccc--ccCcEE
Confidence 888777644 4444 45667765432 11 2221 133589999999999776665544 578888
Q ss_pred eCcCCC
Q psy3966 274 SLRDNP 279 (392)
Q Consensus 274 ~l~~N~ 279 (392)
+++.+.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 887763
No 60
>KOG3665|consensus
Probab=98.17 E-value=1.4e-06 Score=88.18 Aligned_cols=133 Identities=26% Similarity=0.306 Sum_probs=91.0
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC--CCCccccCCCCCCEEEccCCcCCcCCcccc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS--FFPDNASKFTNLRSLDLSNNRITHLPQAIT 99 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~--~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~ 99 (392)
.+|++||+++...-..+.+..++. .+|.|++|.+++=.+. .+.....++++|..||+|+.+++.+...-.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~--------~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGT--------MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhh--------hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhc
Confidence 478889998877655555555553 5788999999887765 344445788899999999998887743333
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc-------cccCCcCCcEEECCCCCCC
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI-------QILDIPTLKYLYLGNNSLN 162 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------~l~~l~~L~~L~l~~n~l~ 162 (392)
+.+|+.|.+.+=.+.....-..+.++++|++||+|.......+. .-..+|+|+.||.+++.+.
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88888888877666542333456678888888888765442221 1123778888888877665
No 61
>KOG4341|consensus
Probab=97.89 E-value=6.8e-07 Score=82.05 Aligned_cols=250 Identities=21% Similarity=0.153 Sum_probs=112.1
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCC-CC--CCCccccCCCCCCEEEccCCc-CCc--CCc
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNN-LS--FFPDNASKFTNLRSLDLSNNR-ITH--LPQ 96 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~-l~--~i~~~l~~l~~L~~L~Ls~n~-l~~--l~~ 96 (392)
.|+.|.+.++.=.+...... +...++++++|.+.+|. ++ ..-..-..+++|++|++..|. ++. +..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt--------~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRT--------FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcchhhH--------HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 46777777776322221111 22456788888877774 33 121122567778888887753 552 221
Q ss_pred ccc-CccchhhhhhcCC-CCCCCCCccCCCCCCCcEEeccCCC-Cc--ccCccccCCcCCcEEECCCCC-CCcC--chhh
Q psy3966 97 AIT-NFPLSTLIARNNL-LTAESLPKDMSNLKNLKVFNLSGNQ-LE--QFPIQILDIPTLKYLYLGNNS-LNHV--PREI 168 (392)
Q Consensus 97 ~~~-~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~l~~l~~L~~L~l~~n~-l~~l--~~~l 168 (392)
... +++|++++++.+. +.+..+.....++..++.+.+.+|. .. .+...-..+..+.++++..+. ++.. ...-
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~ 290 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA 290 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh
Confidence 222 7778888887765 3332333344555556666555542 11 111111123344445444432 2211 1111
Q ss_pred cCCCCccEEEccCCCCc-cc-chhh-cCCcCCCEEEccCCC-CCCc--chhhhCCcccceeeccCCcCCCCChhhHhhhc
Q psy3966 169 NKLCKLHVLSLGGNSLT-DI-PDTF-GDLYQLEALILSDNQ-LESL--PASISNLKMLKSLLLHNNKLRTLPTEIITLKC 242 (392)
Q Consensus 169 ~~~~~L~~L~l~~n~l~-~l-~~~l-~~l~~L~~L~L~~n~-l~~l--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 242 (392)
..+..|+.|+.+++.-. .. -..+ .+..+|+.|-+.+++ ++.. ..--.+++.|+.+++.++...... .+..+..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL~sls~ 369 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-TLASLSR 369 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-hHhhhcc
Confidence 23445555555544321 10 0111 234555555555553 2211 111234455555555555332111 2333333
Q ss_pred ccccCcEEEccCCCC-CC-----CCccccCCCCCCEEeCcCCCCc
Q psy3966 243 LSEKLKSLLLHNNKL-RT-----LPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 243 ~~~~L~~L~l~~n~l-~~-----l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
.++.|+.+.++++.. +. +...-..+..|..+.+++++.+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 444555555555442 11 1122223445555555555543
No 62
>KOG2739|consensus
Probab=97.59 E-value=5.6e-05 Score=65.69 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=35.9
Q ss_pred CCCCcEEeccCCCCcccCccccCCcCCcEEECCCC--CCC-cCchhhcCCCCccEEEccCCCCcccc--hhhcCCcCCCE
Q psy3966 125 LKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNN--SLN-HVPREINKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEA 199 (392)
Q Consensus 125 l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n--~l~-~l~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~ 199 (392)
+..|+.|++.+..++.+. .+..+++|++|.++.| ++. .++.....+++|+++++++|++..+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 344444445444444332 2333555555555555 222 22222333355555555555544220 11233344444
Q ss_pred EEccCCCCC
Q psy3966 200 LILSDNQLE 208 (392)
Q Consensus 200 L~L~~n~l~ 208 (392)
|++.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 444444433
No 63
>KOG2123|consensus
Probab=97.59 E-value=6.1e-06 Score=72.13 Aligned_cols=100 Identities=25% Similarity=0.226 Sum_probs=77.9
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 134 (392)
+.+++.|++-+|.++.| .....|+.|++|.||-|+|+++.....+..|++|++..|.|.+...-..+.++++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45788899999999876 23578999999999999999998877799999999999999864444567889999999999
Q ss_pred CCCCc-ccCc-----cccCCcCCcEEE
Q psy3966 135 GNQLE-QFPI-----QILDIPTLKYLY 155 (392)
Q Consensus 135 ~n~l~-~l~~-----~l~~l~~L~~L~ 155 (392)
.|.-. .-+. .+..+|+|++||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 88654 1111 233467777775
No 64
>KOG4341|consensus
Probab=97.52 E-value=6.1e-06 Score=75.95 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=7.1
Q ss_pred cCCCCCCEEEccCCc
Q psy3966 76 SKFTNLRSLDLSNNR 90 (392)
Q Consensus 76 ~~l~~L~~L~Ls~n~ 90 (392)
.+++++++|++.++.
T Consensus 161 ~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCK 175 (483)
T ss_pred hhCCchhhhhhhcce
Confidence 344455555444443
No 65
>KOG2739|consensus
Probab=97.41 E-value=6.8e-05 Score=65.18 Aligned_cols=106 Identities=25% Similarity=0.269 Sum_probs=49.7
Q ss_pred ccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcC--CCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCc
Q psy3966 75 ASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNN--LLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLK 152 (392)
Q Consensus 75 l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n--~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~ 152 (392)
...+..|+.|.+.+..++++...-.+++|++|.++.| ++.. .++..+-.+++|+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~------------------------~l~vl~e~~P~l~ 94 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSG------------------------GLEVLAEKAPNLK 94 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccc------------------------cceehhhhCCcee
Confidence 3445556666666666655443333444444444444 2222 2222222345555
Q ss_pred EEECCCCCCCcC--chhhcCCCCccEEEccCCCCcccc----hhhcCCcCCCEEEccC
Q psy3966 153 YLYLGNNSLNHV--PREINKLCKLHVLSLGGNSLTDIP----DTFGDLYQLEALILSD 204 (392)
Q Consensus 153 ~L~l~~n~l~~l--~~~l~~~~~L~~L~l~~n~l~~l~----~~l~~l~~L~~L~L~~ 204 (392)
++++++|++..+ ...+..+.+|..|++..|..+.+- ..|.-+++|++||-..
T Consensus 95 ~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 95 VLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred EEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 555555544421 122344455556666665555432 1344556666665433
No 66
>KOG2123|consensus
Probab=97.30 E-value=2.4e-05 Score=68.45 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=42.5
Q ss_pred CCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccc--hhhcCCcCCCEEEcc
Q psy3966 126 KNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEALILS 203 (392)
Q Consensus 126 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~ 203 (392)
.+.+.|++-++.++.+. -...|+.|+.|.|+-|.|+++ ..+..|++|++|+|..|.|..+. ..+.++++|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 34455555555555432 123455666666666666655 34555566666666666555442 234555555655555
Q ss_pred CCC
Q psy3966 204 DNQ 206 (392)
Q Consensus 204 ~n~ 206 (392)
.|.
T Consensus 97 ENP 99 (388)
T KOG2123|consen 97 ENP 99 (388)
T ss_pred cCC
Confidence 553
No 67
>KOG4308|consensus
Probab=97.16 E-value=5.5e-06 Score=80.38 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=17.2
Q ss_pred cCCCEEEccCCCCC-----CcchhhhCCcccceeeccCCcCC
Q psy3966 195 YQLEALILSDNQLE-----SLPASISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 195 ~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~ 231 (392)
..+++++++.|.|+ .+...+..++.++.+.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 34455555555554 12233344445555555555443
No 68
>KOG4308|consensus
Probab=97.14 E-value=4.3e-06 Score=81.11 Aligned_cols=180 Identities=31% Similarity=0.324 Sum_probs=93.0
Q ss_pred chhhhhhcCCCCCC---CCCccCCCCCCCcEEeccCCCCcc-----cCccccCC-cCCcEEECCCCCCC-----cCchhh
Q psy3966 103 LSTLIARNNLLTAE---SLPKDMSNLKNLKVFNLSGNQLEQ-----FPIQILDI-PTLKYLYLGNNSLN-----HVPREI 168 (392)
Q Consensus 103 L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~l~~n~l~-----~l~~~l 168 (392)
+..+.+.+|.+... .+...+..++.|+.|++++|.+.. +-..+... ..+++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 44444444444431 112334445556666666665551 11122222 44555666666555 234455
Q ss_pred cCCCCccEEEccCCCCc-----ccchhhc----CCcCCCEEEccCCCCCC-----cchhhhCCcc-cceeeccCCcCCCC
Q psy3966 169 NKLCKLHVLSLGGNSLT-----DIPDTFG----DLYQLEALILSDNQLES-----LPASISNLKM-LKSLLLHNNKLRTL 233 (392)
Q Consensus 169 ~~~~~L~~L~l~~n~l~-----~l~~~l~----~l~~L~~L~L~~n~l~~-----l~~~l~~l~~-L~~L~L~~n~l~~~ 233 (392)
.....++.++++.|.+. .++..+. ...++++|++.+|.++. +...+...+. ++.+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 55666666677666654 1222333 35667777777776661 1123344444 55677777776532
Q ss_pred --ChhhHhhhcccccCcEEEccCCCCC-----CCCccccCCCCCCEEeCcCCCCcc
Q psy3966 234 --PTEIITLKCLSEKLKSLLLHNNKLR-----TLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 234 --~~~~~~~~~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
......+......++.++++.|.|+ .+...+..++.++++.++.|++..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1111111111135677777777775 334555566677777777777754
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.60 E-value=0.012 Score=46.51 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=3.2
Q ss_pred CcCCCEEEc
Q psy3966 194 LYQLEALIL 202 (392)
Q Consensus 194 l~~L~~L~L 202 (392)
+++|+.+++
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 333444443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.31 E-value=0.018 Score=45.36 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=32.5
Q ss_pred hcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccc
Q psy3966 168 INKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSE 245 (392)
Q Consensus 168 l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 245 (392)
+..+++++.+.+.++ +..++ ..|.++++++.+.+.. .+..++. .+..+++|+.+++..+ +..++...+.- .
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~---~- 103 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN---C- 103 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT-----
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC---C-
Confidence 344444555555442 34332 2344554555555543 3333332 3455666666666554 44443333221 1
Q ss_pred cCcEEEccCCCCCCCC
Q psy3966 246 KLKSLLLHNNKLRTLP 261 (392)
Q Consensus 246 ~L~~L~l~~n~l~~l~ 261 (392)
.++.+.+.. .++.++
T Consensus 104 ~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 104 NLKEINIPS-NITKIE 118 (129)
T ss_dssp T--EEE-TT-B-SS--
T ss_pred CceEEEECC-CccEEC
Confidence 555665554 344443
No 71
>KOG1947|consensus
Probab=96.28 E-value=0.00041 Score=68.24 Aligned_cols=125 Identities=24% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCccEEEccCC-CCCC--CCccccCCCCCCEEEccCC-c-CCcCC----cccc-CccchhhhhhcCC-CCCCCCCccCC
Q psy3966 55 PENIDTLLLYHN-NLSF--FPDNASKFTNLRSLDLSNN-R-ITHLP----QAIT-NFPLSTLIARNNL-LTAESLPKDMS 123 (392)
Q Consensus 55 ~~~L~~L~L~~n-~l~~--i~~~l~~l~~L~~L~Ls~n-~-l~~l~----~~~~-~~~L~~L~l~~n~-~~~~~~~~~~~ 123 (392)
.+.|+.|.+.++ .++. +......++.|+.|+++++ . +...+ .... +.+|+.++++.+. +++..+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 467888888877 3443 3344567788888888873 1 22111 1122 6778888888777 55533333334
Q ss_pred CCCCCcEEeccCCC-Cc--ccCccccCCcCCcEEECCCCCCC---cCchhhcCCCCccEEEc
Q psy3966 124 NLKNLKVFNLSGNQ-LE--QFPIQILDIPTLKYLYLGNNSLN---HVPREINKLCKLHVLSL 179 (392)
Q Consensus 124 ~l~~L~~L~l~~n~-l~--~l~~~l~~l~~L~~L~l~~n~l~---~l~~~l~~~~~L~~L~l 179 (392)
.+++|++|.+.++. ++ .+......++.|++|+++.+... .+......+++++.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 58889999877776 55 33333445788999999887543 13233444666666544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0024 Score=33.42 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=8.5
Q ss_pred ccEEEccCCCCCCCCccc
Q psy3966 58 IDTLLLYHNNLSFFPDNA 75 (392)
Q Consensus 58 L~~L~L~~n~l~~i~~~l 75 (392)
|++|++++|+++.+|..|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444555555444444443
No 73
>KOG0473|consensus
Probab=95.67 E-value=0.00054 Score=58.67 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=74.0
Q ss_pred hhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCC
Q psy3966 190 TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKC 269 (392)
Q Consensus 190 ~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~ 269 (392)
.+......+.||++.|++..+-..++-++.+..|+++.|++..+|.+..... .++.+++..|..+..|.+....++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~----e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQR----ETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHH----HHHHHHhhccchhhCCccccccCC
Confidence 3455667788888888877776677777888888899888888888877765 678888889999999999999999
Q ss_pred CCEEeCcCCCCccc
Q psy3966 270 LSELSLRDNPLVIR 283 (392)
Q Consensus 270 L~~L~l~~N~l~~~ 283 (392)
++++++.+|++...
T Consensus 113 ~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 113 PKKNEQKKTEFFRK 126 (326)
T ss_pred cchhhhccCcchHH
Confidence 99999999998654
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.49 E-value=0.0089 Score=29.03 Aligned_cols=15 Identities=80% Similarity=1.117 Sum_probs=6.5
Q ss_pred CCCEEEccCCcCCcC
Q psy3966 80 NLRSLDLSNNRITHL 94 (392)
Q Consensus 80 ~L~~L~Ls~n~l~~l 94 (392)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555544
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.41 E-value=0.0078 Score=31.44 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=4.9
Q ss_pred cEEEccCCCCccc
Q psy3966 175 HVLSLGGNSLTDI 187 (392)
Q Consensus 175 ~~L~l~~n~l~~l 187 (392)
++|++++|+++.+
T Consensus 3 ~~Ldls~n~l~~i 15 (22)
T PF00560_consen 3 EYLDLSGNNLTSI 15 (22)
T ss_dssp SEEEETSSEESEE
T ss_pred cEEECCCCcCEeC
Confidence 3333333333333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.80 E-value=0.017 Score=28.03 Aligned_cols=15 Identities=47% Similarity=0.720 Sum_probs=5.5
Q ss_pred cCcEEEccCCCCCCC
Q psy3966 246 KLKSLLLHNNKLRTL 260 (392)
Q Consensus 246 ~L~~L~l~~n~l~~l 260 (392)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 77
>KOG1947|consensus
Probab=94.41 E-value=0.012 Score=57.76 Aligned_cols=155 Identities=21% Similarity=0.141 Sum_probs=87.2
Q ss_pred CCCccccccccEEEeecC--CCCchhhHhhhhcccCCcCCCCCCCccEEEccCCC-CCCC-Cccc-cCCCCCCEEEccCC
Q psy3966 15 DSDSFKTVSIKTLDFSYS--SLDSETLATQIELLPNNDYNKKPENIDTLLLYHNN-LSFF-PDNA-SKFTNLRSLDLSNN 89 (392)
Q Consensus 15 ~~~~~~~~~L~~LdLs~n--~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~-l~~i-~~~l-~~l~~L~~L~Ls~n 89 (392)
......++.|++|+++++ ........... ....+++|++|+++++. ++.. -..+ ..+++|++|.+.++
T Consensus 207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 207 DALALKCPNLEELDLSGCCLLITLSPLLLLL-------LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred HHHHhhCchhheecccCcccccccchhHhhh-------hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 345667889999999873 21111111111 12345889999999988 6632 1223 34889999998888
Q ss_pred c-CC--cCCcccc-CccchhhhhhcCCCC-CCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCC---
Q psy3966 90 R-IT--HLPQAIT-NFPLSTLIARNNLLT-AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSL--- 161 (392)
Q Consensus 90 ~-l~--~l~~~~~-~~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l--- 161 (392)
. ++ .+..... ++.|++|+++.+... +..+.....++++++.|.+....- ++.++.+.+.....
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~l~~~~l~~~~~~~~ 350 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------CPSLTDLSLSGLLTLTS 350 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------CccHHHHHHHHhhccCc
Confidence 7 55 3333333 677999999977654 222333345577777755543321 23333333333211
Q ss_pred Cc-CchhhcCCCCccEEEccCCCCc
Q psy3966 162 NH-VPREINKLCKLHVLSLGGNSLT 185 (392)
Q Consensus 162 ~~-l~~~l~~~~~L~~L~l~~n~l~ 185 (392)
.. .......+++++.+.+..+...
T Consensus 351 d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 351 DDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred hhHhHHHHhcCCCcchhhhhhhhcc
Confidence 11 1123456667777777666633
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.03 E-value=0.044 Score=29.79 Aligned_cols=20 Identities=55% Similarity=0.866 Sum_probs=13.1
Q ss_pred CCCCEEEccCCcCCcCCccc
Q psy3966 79 TNLRSLDLSNNRITHLPQAI 98 (392)
Q Consensus 79 ~~L~~L~Ls~n~l~~l~~~~ 98 (392)
++|++|+|++|+|+.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56677777777777666543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.03 E-value=0.044 Score=29.79 Aligned_cols=20 Identities=55% Similarity=0.866 Sum_probs=13.1
Q ss_pred CCCCEEEccCCcCCcCCccc
Q psy3966 79 TNLRSLDLSNNRITHLPQAI 98 (392)
Q Consensus 79 ~~L~~L~Ls~n~l~~l~~~~ 98 (392)
++|++|+|++|+|+.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 56677777777777666543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.20 E-value=0.082 Score=28.71 Aligned_cols=15 Identities=53% Similarity=0.815 Sum_probs=6.1
Q ss_pred CcEEEccCCCCCCCC
Q psy3966 247 LKSLLLHNNKLRTLP 261 (392)
Q Consensus 247 L~~L~l~~n~l~~l~ 261 (392)
|+.|++++|+|+.+|
T Consensus 4 L~~L~L~~N~l~~lp 18 (26)
T smart00370 4 LRELDLSNNQLSSLP 18 (26)
T ss_pred CCEEECCCCcCCcCC
Confidence 344444444444443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.20 E-value=0.082 Score=28.71 Aligned_cols=15 Identities=53% Similarity=0.815 Sum_probs=6.1
Q ss_pred CcEEEccCCCCCCCC
Q psy3966 247 LKSLLLHNNKLRTLP 261 (392)
Q Consensus 247 L~~L~l~~n~l~~l~ 261 (392)
|+.|++++|+|+.+|
T Consensus 4 L~~L~L~~N~l~~lp 18 (26)
T smart00369 4 LRELDLSNNQLSSLP 18 (26)
T ss_pred CCEEECCCCcCCcCC
Confidence 344444444444443
No 82
>KOG0473|consensus
Probab=93.00 E-value=0.0026 Score=54.60 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=44.5
Q ss_pred CCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEcc
Q psy3966 124 NLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203 (392)
Q Consensus 124 ~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~ 203 (392)
.....+.||++.|++..+...+.-++.+..|+++.|.+..+|.+++....+..++...|..+..|.+++..++++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 34455555555555554444444445555555555555555555555555555555555555555555555555555555
Q ss_pred CCCC
Q psy3966 204 DNQL 207 (392)
Q Consensus 204 ~n~l 207 (392)
+|.+
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 5543
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.47 E-value=0.11 Score=27.65 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=12.0
Q ss_pred cccccEEEeecCCCCchhhH
Q psy3966 21 TVSIKTLDFSYSSLDSETLA 40 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~ 40 (392)
+++|++|||++|.++++++.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHH
Confidence 35778888888887765544
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.03 E-value=0.27 Score=27.25 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=17.9
Q ss_pred ccccEEEeecCCCCchhhHhhhh
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIE 44 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~ 44 (392)
++|++|||++|.+..++......
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 57899999999998777665544
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.14 E-value=0.35 Score=26.23 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=13.3
Q ss_pred ccCcEEEccCCCCCCCCc
Q psy3966 245 EKLKSLLLHNNKLRTLPT 262 (392)
Q Consensus 245 ~~L~~L~l~~n~l~~l~~ 262 (392)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367777888888777775
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.84 E-value=0.78 Score=24.97 Aligned_cols=16 Identities=56% Similarity=0.843 Sum_probs=10.5
Q ss_pred CCCCEEEccCCcCCcC
Q psy3966 79 TNLRSLDLSNNRITHL 94 (392)
Q Consensus 79 ~~L~~L~Ls~n~l~~l 94 (392)
++|++|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5667777777776644
No 87
>KOG4242|consensus
Probab=83.93 E-value=12 Score=36.27 Aligned_cols=107 Identities=21% Similarity=0.148 Sum_probs=57.9
Q ss_pred cccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC--CCCccc--cCCCCCCEEEccCCcCC-cCC
Q psy3966 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS--FFPDNA--SKFTNLRSLDLSNNRIT-HLP 95 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~--~i~~~l--~~l~~L~~L~Ls~n~l~-~l~ 95 (392)
-+.++++|++.|.+..+........ .--+.++.|.++ .|.... ..=..+.+++++.|... .+|
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p------------~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQP------------GNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIP 231 (553)
T ss_pred cchhhhhccCCCcccccCCccccCC------------CCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccch
Confidence 3467899999999876543322211 111667777665 121111 12235778888888765 555
Q ss_pred cccc----CccchhhhhhcCCCCCCCCC--ccCCCCCCCcEEeccCCCCc
Q psy3966 96 QAIT----NFPLSTLIARNNLLTAESLP--KDMSNLKNLKVFNLSGNQLE 139 (392)
Q Consensus 96 ~~~~----~~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~l~ 139 (392)
.... ...++.++.+...+...... -..+.-++++..+++.|..+
T Consensus 232 ~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 232 RTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 4433 33455666655544332222 22344456777777776544
No 88
>KOG4242|consensus
Probab=82.58 E-value=3.1 Score=40.02 Aligned_cols=132 Identities=13% Similarity=0.041 Sum_probs=69.0
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CCCccccC--CCCCCEEEccCCcCC-----c
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNASK--FTNLRSLDLSNNRIT-----H 93 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~--l~~L~~L~Ls~n~l~-----~ 93 (392)
..++.++|--+.+........... .....-+.+++++++.|.+. ..|-.+.. ++ +.++.|.++ .
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs----~~~rpnpr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~ 206 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHS----TRARPNPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISK 206 (553)
T ss_pred ccCCccCchhccCchhhcccccch----hhcCCcchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHH
Confidence 345666666666543322222211 11123356788888888776 44333311 12 556666654 2
Q ss_pred CCccccCccchhhhhhcCCCCCCCCCccCCC---CCCCcEEeccCCCCc--cc-Cc-cccCCcCCcEEECCCCCCC
Q psy3966 94 LPQAITNFPLSTLIARNNLLTAESLPKDMSN---LKNLKVFNLSGNQLE--QF-PI-QILDIPTLKYLYLGNNSLN 162 (392)
Q Consensus 94 l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---l~~L~~L~l~~n~l~--~l-~~-~l~~l~~L~~L~l~~n~l~ 162 (392)
++..-.-..+.+++++.|...+ .+|..+.. -.-++.++.+...+. .. .. ..+..+++...+++.|...
T Consensus 207 l~~qsg~~~lteldls~n~~Kd-dip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 207 LLIQSGRLWLTELDLSTNGGKD-DIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hhhhhccccccccccccCCCCc-cchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 3322224567788888777664 44443322 234677777776655 22 11 1223567777777777654
No 89
>KOG3763|consensus
Probab=79.29 E-value=0.52 Score=45.92 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=39.6
Q ss_pred CCCCccEEEccCCCCCCC---CccccCCCCCCEEEccCC--cCCcCCcc--ccCccchhhhhhcCCCCC
Q psy3966 54 KPENIDTLLLYHNNLSFF---PDNASKFTNLRSLDLSNN--RITHLPQA--ITNFPLSTLIARNNLLTA 115 (392)
Q Consensus 54 ~~~~L~~L~L~~n~l~~i---~~~l~~l~~L~~L~Ls~n--~l~~l~~~--~~~~~L~~L~l~~n~~~~ 115 (392)
+.+.+..++|++|++..+ ...-...++|+.|+|++| .+..-+.. ++...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456788888888877643 222245678888888888 44432222 225667777777777654
No 90
>KOG3864|consensus
Probab=75.78 E-value=1 Score=38.23 Aligned_cols=80 Identities=21% Similarity=0.188 Sum_probs=43.6
Q ss_pred cCCcEEECCCCCCCcC-chhhcCCCCccEEEccCCCCc-cc-chhhc-CCcCCCEEEccCC-CCCCcc-hhhhCCcccce
Q psy3966 149 PTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLT-DI-PDTFG-DLYQLEALILSDN-QLESLP-ASISNLKMLKS 222 (392)
Q Consensus 149 ~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~-~l-~~~l~-~l~~L~~L~L~~n-~l~~l~-~~l~~l~~L~~ 222 (392)
..++.++-++..|... -+.+..++.++.|.+.++.-- .- -+.++ -.++|+.|++++| +|++-. ..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3466677776666522 244566666676666665422 10 01122 3457777777766 455321 34566666776
Q ss_pred eeccCC
Q psy3966 223 LLLHNN 228 (392)
Q Consensus 223 L~L~~n 228 (392)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 666543
No 91
>KOG3864|consensus
Probab=74.85 E-value=0.79 Score=38.92 Aligned_cols=79 Identities=27% Similarity=0.269 Sum_probs=38.0
Q ss_pred CCCEEEccCCCCCCc-chhhhCCcccceeeccCCc-CCCCChhhHhhhcccccCcEEEccCCC-CCCC-CccccCCCCCC
Q psy3966 196 QLEALILSDNQLESL-PASISNLKMLKSLLLHNNK-LRTLPTEIITLKCLSEKLKSLLLHNNK-LRTL-PTEIITLKCLS 271 (392)
Q Consensus 196 ~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~l-~~~l~~l~~L~ 271 (392)
.++.+|.++..|... -+.+..++.++.|.+.++. +.+. .+..+....++|+.|++++|. ||+- -..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~--~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW--CLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH--HHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 455566666555422 1234555566666655553 2111 112222233566666666654 4422 23455556666
Q ss_pred EEeCc
Q psy3966 272 ELSLR 276 (392)
Q Consensus 272 ~L~l~ 276 (392)
.|.+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 55554
No 92
>KOG3763|consensus
Probab=67.77 E-value=3.5 Score=40.41 Aligned_cols=63 Identities=32% Similarity=0.355 Sum_probs=40.6
Q ss_pred CCcCCCEEEccCCCCCCcc---hhhhCCcccceeeccCC--cCCCCChhhHhhhcccccCcEEEccCCCCC
Q psy3966 193 DLYQLEALILSDNQLESLP---ASISNLKMLKSLLLHNN--KLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258 (392)
Q Consensus 193 ~l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 258 (392)
+.+.+..+.|++|++..+. ......|+|+.|+|++| .+.. ..++.++.. ..|++|-+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~--l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKG--LPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcC--CCHHHeeecCCccc
Confidence 4567778888888877443 23355688888888888 3332 223333322 25888888888874
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=63.83 E-value=6.1 Score=21.18 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=11.7
Q ss_pred cccccEEEeecCC-CCchhh
Q psy3966 21 TVSIKTLDFSYSS-LDSETL 39 (392)
Q Consensus 21 ~~~L~~LdLs~n~-l~~~~~ 39 (392)
+++|++|+|+++. +++.++
T Consensus 1 c~~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHH
Confidence 3567777777774 555443
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.30 E-value=18 Score=42.69 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=10.0
Q ss_pred cCCCccCceeEEeccCccc
Q psy3966 351 FCGKYRIPLLQYLCSSRCI 369 (392)
Q Consensus 351 ~~~~~~~p~~~~~~~~~~~ 369 (392)
+||....+...+.|.+.|-
T Consensus 139 ~~~~~~~~~~~~~~~~~~~ 157 (2740)
T TIGR00864 139 LCGAAQPSEANFACESLCS 157 (2740)
T ss_pred EecCCCCCCcccccccccc
Confidence 4444443444556666664
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.20 E-value=55 Score=39.08 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=22.2
Q ss_pred EccCCCCcccch-hhcCCcCCCEEEccCCCCC
Q psy3966 178 SLGGNSLTDIPD-TFGDLYQLEALILSDNQLE 208 (392)
Q Consensus 178 ~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~ 208 (392)
||++|+|+.+|. .|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 467777777754 5666777888888777666
Done!