Query psy3966
Match_columns 392
No_of_seqs 555 out of 3858
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 21:52:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-30 5.7E-35 240.0 13.4 254 9-279 38-302 (313)
2 4eco_A Uncharacterized protein 100.0 3.1E-30 1.1E-34 260.4 15.0 213 56-275 305-543 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.6E-29 5.6E-34 260.6 20.0 252 17-277 510-785 (876)
4 3rgz_A Protein brassinosteroid 100.0 3E-29 1E-33 258.7 21.3 263 14-289 359-701 (768)
5 1xku_A Decorin; proteoglycan, 100.0 1.3E-28 4.6E-33 229.0 21.7 241 22-285 31-280 (330)
6 4eco_A Uncharacterized protein 100.0 1.4E-29 4.7E-34 255.8 15.8 263 14-289 239-533 (636)
7 3rgz_A Protein brassinosteroid 100.0 4.6E-29 1.6E-33 257.3 20.0 263 18-290 339-678 (768)
8 4ecn_A Leucine-rich repeat pro 100.0 1.6E-29 5.4E-34 260.8 15.4 264 14-282 440-767 (876)
9 3o6n_A APL1; leucine-rich repe 100.0 3.7E-28 1.3E-32 231.2 23.6 244 20-283 67-333 (390)
10 4fcg_A Uncharacterized protein 100.0 7.7E-29 2.6E-33 230.3 17.7 221 55-281 80-314 (328)
11 3v47_A TOLL-like receptor 5B a 100.0 3.6E-28 1.2E-32 235.9 20.7 109 172-283 275-386 (455)
12 2ft3_A Biglycan; proteoglycan, 100.0 9E-28 3.1E-32 223.6 20.7 243 22-288 33-284 (332)
13 4fmz_A Internalin; leucine ric 100.0 5.4E-27 1.8E-31 219.6 25.6 214 55-281 65-278 (347)
14 1xku_A Decorin; proteoglycan, 100.0 1.5E-27 5.1E-32 221.9 21.6 243 22-282 52-307 (330)
15 3oja_B Anopheles plasmodium-re 100.0 1.5E-27 5.3E-32 239.2 23.0 243 20-282 73-338 (597)
16 1ogq_A PGIP-2, polygalacturona 100.0 1E-28 3.5E-33 228.0 13.1 225 56-286 50-286 (313)
17 4fcg_A Uncharacterized protein 100.0 5.7E-28 2E-32 224.4 17.5 225 21-261 80-317 (328)
18 2z7x_B TOLL-like receptor 1, v 100.0 1E-27 3.5E-32 236.7 19.0 129 148-282 323-458 (520)
19 2id5_A Lingo-1, leucine rich r 100.0 2.3E-27 7.7E-32 231.8 20.2 247 22-282 32-310 (477)
20 4fmz_A Internalin; leucine ric 100.0 1.3E-26 4.5E-31 216.9 24.3 243 18-285 84-328 (347)
21 2z66_A Variable lymphocyte rec 100.0 1.5E-27 5.3E-32 219.4 17.6 241 25-283 10-263 (306)
22 3o6n_A APL1; leucine-rich repe 100.0 3.9E-27 1.3E-31 224.2 20.7 244 18-282 41-309 (390)
23 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-27 9.2E-32 220.4 18.5 241 22-281 54-307 (332)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-26 4.5E-31 231.0 24.3 135 146-287 350-491 (562)
25 2z7x_B TOLL-like receptor 1, v 99.9 7.8E-27 2.7E-31 230.4 22.0 155 123-283 321-483 (520)
26 3v47_A TOLL-like receptor 5B a 99.9 9E-27 3.1E-31 226.1 21.5 252 22-288 30-367 (455)
27 2id5_A Lingo-1, leucine rich r 99.9 1.4E-26 4.8E-31 226.2 22.8 246 24-286 13-290 (477)
28 2z80_A TOLL-like receptor 2, v 99.9 1.3E-27 4.3E-32 224.5 13.9 222 57-283 53-316 (353)
29 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-26 3.6E-31 233.7 20.8 114 17-140 51-167 (606)
30 3t6q_A CD180 antigen; protein- 99.9 2.4E-26 8.3E-31 231.1 22.8 253 23-289 255-521 (606)
31 3zyj_A Leucine-rich repeat-con 99.9 2.2E-26 7.5E-31 222.5 21.1 254 12-283 33-294 (440)
32 3t6q_A CD180 antigen; protein- 99.9 1.7E-26 5.7E-31 232.2 21.1 254 15-283 50-391 (606)
33 1wwl_A Monocyte differentiatio 99.9 1.1E-28 3.9E-33 227.6 4.7 241 19-282 40-310 (312)
34 1o6v_A Internalin A; bacterial 99.9 7E-26 2.4E-30 220.6 24.6 245 15-282 61-323 (466)
35 1o6v_A Internalin A; bacterial 99.9 2.6E-26 9E-31 223.6 21.1 238 18-281 86-344 (466)
36 3zyi_A Leucine-rich repeat-con 99.9 4.5E-26 1.5E-30 221.1 22.6 243 23-283 55-305 (452)
37 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-27 6.2E-32 220.1 11.7 256 22-300 10-269 (317)
38 3oja_B Anopheles plasmodium-re 99.9 2.9E-26 9.9E-31 230.0 20.8 244 19-282 48-315 (597)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.3E-26 4.4E-31 231.0 18.1 252 22-287 52-447 (562)
40 3vq2_A TLR4, TOLL-like recepto 99.9 5.5E-27 1.9E-31 235.8 14.9 222 54-284 283-513 (606)
41 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-25 7.4E-30 222.8 25.3 222 22-283 61-299 (622)
42 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-25 6.1E-30 216.7 23.4 209 18-260 38-248 (457)
43 3bz5_A Internalin-J, INLJ; leu 99.9 4.7E-25 1.6E-29 213.8 26.0 189 16-233 58-248 (457)
44 1ozn_A Reticulon 4 receptor; N 99.9 9E-26 3.1E-30 205.5 19.1 219 25-283 14-240 (285)
45 2z81_A CD282 antigen, TOLL-lik 99.9 5.3E-26 1.8E-30 225.9 18.8 103 170-281 359-464 (549)
46 2z66_A Variable lymphocyte rec 99.9 9E-27 3.1E-31 214.3 12.2 234 58-297 9-252 (306)
47 2z81_A CD282 antigen, TOLL-lik 99.9 4E-26 1.4E-30 226.8 17.1 88 193-281 332-423 (549)
48 1ziw_A TOLL-like receptor 3; i 99.9 2E-25 6.8E-30 227.4 21.6 253 17-282 324-598 (680)
49 1ozn_A Reticulon 4 receptor; N 99.9 8E-26 2.7E-30 205.8 16.1 200 21-231 31-238 (285)
50 1jl5_A Outer protein YOPM; leu 99.9 8.8E-25 3E-29 211.7 24.2 229 22-287 131-378 (454)
51 1p9a_G Platelet glycoprotein I 99.9 2.5E-25 8.5E-30 203.0 18.5 201 54-283 8-210 (290)
52 3o53_A Protein LRIM1, AGAP0063 99.9 3E-27 1E-31 218.7 5.7 236 20-278 32-272 (317)
53 3oja_A Leucine-rich immune mol 99.9 1.3E-25 4.3E-30 219.6 15.3 217 54-283 32-252 (487)
54 2z62_A TOLL-like receptor 4, v 99.9 3.9E-25 1.3E-29 200.3 17.4 201 56-283 28-239 (276)
55 1ziw_A TOLL-like receptor 3; i 99.9 6.8E-25 2.3E-29 223.5 20.3 266 16-283 266-575 (680)
56 2z63_A TOLL-like receptor 4, v 99.9 3.8E-25 1.3E-29 220.6 17.1 248 18-283 278-533 (570)
57 1jl5_A Outer protein YOPM; leu 99.9 3.2E-24 1.1E-28 207.7 23.1 183 56-261 91-273 (454)
58 2z80_A TOLL-like receptor 2, v 99.9 6.5E-26 2.2E-30 212.8 10.7 226 55-287 30-295 (353)
59 1wwl_A Monocyte differentiatio 99.9 7E-26 2.4E-30 209.0 10.1 226 24-259 65-310 (312)
60 3zyj_A Leucine-rich repeat-con 99.9 1.3E-24 4.5E-29 210.0 19.3 222 22-258 64-292 (440)
61 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-24 4.6E-29 226.2 19.7 106 172-281 266-375 (844)
62 2z63_A TOLL-like receptor 4, v 99.9 1.1E-24 3.7E-29 217.3 18.1 225 53-286 279-512 (570)
63 3oja_A Leucine-rich immune mol 99.9 5.7E-26 2E-30 222.0 8.5 234 20-276 32-270 (487)
64 3g06_A SSPH2 (leucine-rich rep 99.9 6.9E-24 2.4E-28 211.9 23.0 222 22-281 40-274 (622)
65 3zyi_A Leucine-rich repeat-con 99.9 3.3E-24 1.1E-28 207.9 19.9 222 22-258 75-303 (452)
66 3j0a_A TOLL-like receptor 5; m 99.9 1.7E-24 5.7E-29 225.5 18.8 247 21-286 265-544 (844)
67 4g8a_A TOLL-like receptor 4; l 99.9 7.2E-24 2.5E-28 213.7 22.9 128 23-161 53-185 (635)
68 4glp_A Monocyte differentiatio 99.9 7.9E-25 2.7E-29 201.7 13.4 218 57-282 65-308 (310)
69 1h6u_A Internalin H; cell adhe 99.9 6.1E-24 2.1E-28 195.5 18.5 191 56-282 41-231 (308)
70 2o6q_A Variable lymphocyte rec 99.9 3.1E-23 1.1E-27 187.2 22.6 160 121-283 56-220 (270)
71 4g8a_A TOLL-like receptor 4; l 99.9 2.2E-23 7.7E-28 210.1 23.5 268 16-296 70-570 (635)
72 3goz_A Leucine-rich repeat-con 99.9 2E-25 6.8E-30 210.3 6.9 292 26-328 2-353 (362)
73 2o6q_A Variable lymphocyte rec 99.9 3E-23 1E-27 187.3 19.6 208 8-258 6-218 (270)
74 1p9a_G Platelet glycoprotein I 99.9 1.6E-23 5.5E-28 190.9 17.8 200 17-258 5-208 (290)
75 2z62_A TOLL-like receptor 4, v 99.9 1.3E-23 4.5E-28 190.2 15.8 201 22-258 28-237 (276)
76 1h6u_A Internalin H; cell adhe 99.9 3.1E-23 1.1E-27 190.8 17.0 200 17-263 36-235 (308)
77 1z7x_W Ribonuclease inhibitor; 99.9 3.5E-25 1.2E-29 215.2 2.9 260 19-283 110-413 (461)
78 2xwt_C Thyrotropin receptor; s 99.9 3.9E-23 1.3E-27 183.1 14.6 195 56-279 31-237 (239)
79 1z7x_W Ribonuclease inhibitor; 99.9 1E-24 3.5E-29 211.9 3.8 259 20-283 54-356 (461)
80 2ca6_A RAN GTPase-activating p 99.9 5.4E-25 1.9E-29 209.1 1.6 226 56-283 32-318 (386)
81 3rfs_A Internalin B, repeat mo 99.9 3.7E-23 1.2E-27 186.9 12.3 200 56-290 41-244 (272)
82 3rfs_A Internalin B, repeat mo 99.9 3.9E-23 1.3E-27 186.7 11.6 209 57-303 20-232 (272)
83 3cvr_A Invasion plasmid antige 99.9 3.2E-22 1.1E-26 197.6 18.0 187 57-285 60-247 (571)
84 2ast_B S-phase kinase-associat 99.9 1.7E-23 6E-28 194.7 7.0 246 23-285 48-310 (336)
85 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.6E-28 198.8 6.3 253 17-278 27-340 (386)
86 2xwt_C Thyrotropin receptor; s 99.9 6.1E-22 2.1E-26 175.4 14.9 194 22-255 31-236 (239)
87 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.2E-27 186.4 11.0 227 18-259 60-308 (310)
88 3cvr_A Invasion plasmid antige 99.9 1.2E-21 4E-26 193.6 14.8 187 23-241 60-254 (571)
89 4ay9_X Follicle-stimulating ho 99.9 2.5E-21 8.6E-26 181.3 14.9 234 25-279 12-257 (350)
90 3m19_A Variable lymphocyte rec 99.9 1.3E-20 4.3E-25 168.2 18.2 155 56-233 35-194 (251)
91 1h6t_A Internalin B; cell adhe 99.8 5.6E-21 1.9E-25 174.2 13.1 171 56-261 46-216 (291)
92 2ast_B S-phase kinase-associat 99.8 3.6E-22 1.2E-26 185.8 5.0 217 56-278 47-282 (336)
93 1h6t_A Internalin B; cell adhe 99.8 1E-20 3.4E-25 172.5 13.5 190 58-283 26-215 (291)
94 3m19_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 164.9 17.0 133 147-283 57-194 (251)
95 3goz_A Leucine-rich repeat-con 99.8 5.9E-22 2E-26 186.5 3.1 232 21-259 21-298 (362)
96 1m9s_A Internalin B; cell inva 99.8 3.3E-20 1.1E-24 185.0 11.5 195 21-235 20-214 (605)
97 1xeu_A Internalin C; cellular 99.8 1.8E-20 6.2E-25 168.2 7.9 168 58-234 21-188 (263)
98 1m9s_A Internalin B; cell inva 99.8 1.3E-19 4.3E-24 180.9 14.4 191 57-260 22-212 (605)
99 2o6s_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 154.0 15.4 175 59-268 10-189 (208)
100 1xeu_A Internalin C; cellular 99.8 1.2E-19 4.1E-24 162.9 12.7 170 100-283 18-187 (263)
101 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 9.8E-24 167.3 15.7 215 59-280 12-235 (350)
102 4ezg_A Putative uncharacterize 99.8 5.7E-19 1.9E-23 151.4 12.6 152 123-282 41-195 (197)
103 4ezg_A Putative uncharacterize 99.8 3.4E-19 1.1E-23 152.9 11.0 149 56-232 44-195 (197)
104 1dce_A Protein (RAB geranylger 99.8 3.3E-21 1.1E-25 191.1 -2.0 120 150-275 442-567 (567)
105 3e6j_A Variable lymphocyte rec 99.8 3.7E-18 1.3E-22 149.9 16.9 150 128-283 21-174 (229)
106 1dce_A Protein (RAB geranylger 99.8 1.8E-21 6.3E-26 192.9 -5.0 104 173-282 442-547 (567)
107 2xot_A Amphoterin-induced prot 99.8 1.4E-18 4.8E-23 163.3 14.2 176 82-283 21-204 (361)
108 2v9t_B SLIT homolog 2 protein 99.8 3.8E-18 1.3E-22 148.9 15.2 150 129-283 14-167 (220)
109 3ogk_B Coronatine-insensitive 99.8 1.4E-20 4.6E-25 188.5 -1.7 252 20-283 162-503 (592)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 5E-18 1.7E-22 148.1 14.7 150 128-283 13-168 (220)
111 3e6j_A Variable lymphocyte rec 99.8 7.9E-18 2.7E-22 147.8 15.8 152 57-233 20-174 (229)
112 2v9t_B SLIT homolog 2 protein 99.8 8.4E-18 2.9E-22 146.7 15.7 147 60-231 15-165 (220)
113 2xot_A Amphoterin-induced prot 99.8 2.9E-18 1E-22 161.1 13.2 171 25-231 21-202 (361)
114 2v70_A SLIT-2, SLIT homolog 2 99.8 6.4E-18 2.2E-22 147.5 13.1 149 59-231 14-166 (220)
115 2o6s_A Variable lymphocyte rec 99.8 6.5E-17 2.2E-21 139.7 19.0 161 129-302 10-174 (208)
116 3ogk_B Coronatine-insensitive 99.8 3.1E-19 1.1E-23 178.7 4.6 197 23-231 139-391 (592)
117 4b8c_D Glucose-repressible alc 99.7 4.7E-18 1.6E-22 173.5 11.1 154 122-285 243-408 (727)
118 2ell_A Acidic leucine-rich nuc 99.7 4.2E-17 1.4E-21 135.9 11.4 134 54-212 22-164 (168)
119 2ell_A Acidic leucine-rich nuc 99.7 6E-17 2E-21 135.0 12.1 136 126-262 24-164 (168)
120 2p1m_B Transport inhibitor res 99.7 9.2E-20 3.1E-24 182.5 -6.4 130 20-158 103-244 (594)
121 2je0_A Acidic leucine-rich nuc 99.6 3.1E-16 1.1E-20 127.9 8.8 109 126-235 17-130 (149)
122 2je0_A Acidic leucine-rich nuc 99.6 6.2E-16 2.1E-20 126.1 10.6 124 148-276 16-148 (149)
123 1a9n_A U2A', U2A'; complex (nu 99.6 1.3E-16 4.6E-21 134.0 6.6 130 123-281 16-153 (176)
124 2p1m_B Transport inhibitor res 99.6 3.1E-18 1.1E-22 171.4 -4.5 253 20-283 154-496 (594)
125 1w8a_A SLIT protein; signaling 99.6 1.1E-15 3.7E-20 130.3 11.4 127 152-284 11-142 (192)
126 4b8c_D Glucose-repressible alc 99.6 4.5E-16 1.5E-20 158.9 10.7 182 101-288 173-361 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.6 8.4E-16 2.9E-20 129.1 10.5 137 93-232 11-154 (176)
128 2wfh_A SLIT homolog 2 protein 99.6 2E-15 6.9E-20 128.7 12.8 127 152-283 13-141 (193)
129 2wfh_A SLIT homolog 2 protein 99.6 9E-15 3.1E-19 124.7 13.1 125 129-258 13-139 (193)
130 3sb4_A Hypothetical leucine ri 99.6 2.8E-15 9.5E-20 138.9 9.8 124 20-158 23-157 (329)
131 1w8a_A SLIT protein; signaling 99.6 7.4E-15 2.5E-19 125.1 11.6 126 59-208 11-139 (192)
132 2o6r_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 119.5 13.6 128 151-283 9-139 (177)
133 1ds9_A Outer arm dynein; leuci 99.5 7.3E-17 2.5E-21 138.3 -4.5 134 140-281 39-185 (198)
134 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 116.3 14.8 65 123-187 49-115 (177)
135 3sb4_A Hypothetical leucine ri 99.5 1.5E-14 5.3E-19 133.9 9.8 225 21-252 48-328 (329)
136 1ds9_A Outer arm dynein; leuci 99.5 1E-16 3.5E-21 137.4 -5.8 137 118-258 40-185 (198)
137 4fdw_A Leucine rich hypothetic 99.5 8E-13 2.7E-17 125.4 16.5 189 80-281 158-358 (401)
138 2r9u_A Variable lymphocyte rec 99.4 7E-13 2.4E-17 110.9 12.4 107 128-236 14-123 (174)
139 3un9_A NLR family member X1; l 99.4 1.1E-14 3.9E-19 136.8 1.5 155 56-232 72-253 (372)
140 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 109.2 12.3 106 128-235 11-119 (170)
141 3g39_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 110.1 11.0 105 174-283 11-117 (170)
142 3un9_A NLR family member X1; l 99.4 1.6E-14 5.6E-19 135.7 0.0 187 78-283 71-285 (372)
143 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 109.8 10.8 102 175-282 15-119 (174)
144 4fdw_A Leucine rich hypothetic 99.4 1.2E-11 4.1E-16 117.3 16.5 235 22-279 135-381 (401)
145 2ifg_A High affinity nerve gro 99.2 9.4E-11 3.2E-15 109.1 10.4 101 153-258 12-116 (347)
146 2ifg_A High affinity nerve gro 99.1 1.5E-10 5.1E-15 107.7 10.8 100 131-231 13-116 (347)
147 1io0_A Tropomodulin; LRR prote 98.9 6.2E-10 2.1E-14 93.8 4.1 111 121-231 31-164 (185)
148 4fs7_A Uncharacterized protein 98.9 2.1E-08 7.1E-13 94.9 15.1 125 74-203 157-284 (394)
149 2ra8_A Uncharacterized protein 98.9 1.2E-09 4.2E-14 101.8 4.9 128 125-256 192-341 (362)
150 2ra8_A Uncharacterized protein 98.9 8.1E-10 2.8E-14 103.0 3.3 135 146-283 169-322 (362)
151 1io0_A Tropomodulin; LRR prote 98.8 3E-09 1E-13 89.6 5.9 116 167-282 31-165 (185)
152 4gt6_A Cell surface protein; l 98.8 2.6E-07 8.8E-12 87.3 19.8 107 167-280 260-369 (394)
153 4fs7_A Uncharacterized protein 98.8 3.6E-08 1.2E-12 93.2 12.0 212 53-278 159-376 (394)
154 4gt6_A Cell surface protein; l 98.5 1.9E-06 6.6E-11 81.3 15.1 83 190-278 260-344 (394)
155 4h09_A Hypothetical leucine ri 98.3 2.9E-05 9.8E-10 72.7 18.8 105 168-278 213-320 (379)
156 3rw6_A Nuclear RNA export fact 98.2 3.7E-07 1.3E-11 80.9 2.6 39 194-232 169-210 (267)
157 1pgv_A TMD-1, tropomodulin TMD 98.2 1.9E-06 6.6E-11 72.3 5.9 111 170-280 39-169 (197)
158 3rw6_A Nuclear RNA export fact 98.2 6.5E-07 2.2E-11 79.3 3.2 62 169-231 167-233 (267)
159 1pgv_A TMD-1, tropomodulin TMD 98.2 1.8E-06 6.1E-11 72.5 5.4 61 167-227 65-135 (197)
160 4h09_A Hypothetical leucine ri 98.2 4.4E-05 1.5E-09 71.4 15.6 241 15-278 62-343 (379)
161 3e4g_A ATP synthase subunit S, 97.9 1.5E-05 5E-10 65.6 5.2 79 150-228 62-149 (176)
162 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.8E-10 66.4 3.1 83 195-279 61-150 (176)
163 3rfe_A Platelet glycoprotein I 97.2 0.00037 1.3E-08 54.4 5.4 56 221-282 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.9 0.0015 5.1E-08 50.9 6.0 54 176-231 12-68 (130)
165 2lz0_A Uncharacterized protein 29.0 68 0.0023 22.8 4.2 37 190-227 15-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.7e-30 Score=240.04 Aligned_cols=254 Identities=25% Similarity=0.323 Sum_probs=181.4
Q ss_pred ccCCCCCCCccccccccEEEeecCCCCch-hhHhhhhcccCCcCCCCCCCccEEEccC-CCCC-CCCccccCCCCCCEEE
Q psy3966 9 SSSDSSDSDSFKTVSIKTLDFSYSSLDSE-TLATQIELLPNNDYNKKPENIDTLLLYH-NNLS-FFPDNASKFTNLRSLD 85 (392)
Q Consensus 9 ~~~~~~~~~~~~~~~L~~LdLs~n~l~~~-~~~~~~~~l~~~~~~~~~~~L~~L~L~~-n~l~-~i~~~l~~l~~L~~L~ 85 (392)
|.|+.|+... ...++++|||++|.+++. .++..+. .+++|++|++++ |.+. .+|..++++++|++|+
T Consensus 38 w~gv~C~~~~-~~~~l~~L~L~~~~l~~~~~~~~~l~---------~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 38 WLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLA---------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp STTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGG---------GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE
T ss_pred CcceEeCCCC-CCceEEEEECCCCCccCCcccChhHh---------CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEE
Confidence 6666665432 124789999999998751 1233332 467899999995 8777 7888889999999999
Q ss_pred ccCCcCC-cCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc-ccCccccCCc-CCcEEECCCCCC
Q psy3966 86 LSNNRIT-HLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIP-TLKYLYLGNNSL 161 (392)
Q Consensus 86 Ls~n~l~-~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~-~L~~L~l~~n~l 161 (392)
+++|.++ .+|..+. +.+|++|++++|.+++ .+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 9999988 6776665 7777777777777765 56777777777777777777777 6676777766 777777777777
Q ss_pred C-cCchhhcCCCCccEEEccCCCCcc-cchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCC-CCChhhH
Q psy3966 162 N-HVPREINKLCKLHVLSLGGNSLTD-IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR-TLPTEII 238 (392)
Q Consensus 162 ~-~l~~~l~~~~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~ 238 (392)
+ .+|..+..++ |++|++++|.++. .|..+..+++|++|++++|.++..+..+..+++|++|++++|.++ .+|..+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence 6 5666666665 7777777777773 455677777777777777777755555666777777777777776 5665555
Q ss_pred hhhcccccCcEEEccCCCCC-CCCccccCCCCCCEEeCcCCC
Q psy3966 239 TLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNP 279 (392)
Q Consensus 239 ~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~N~ 279 (392)
.+. +|+.|++++|.++ .+|.. ..+++|+.+++++|+
T Consensus 266 ~l~----~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLK----FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GCT----TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCc----CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 443 6777777777776 55554 667777777777776
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.1e-30 Score=260.44 Aligned_cols=213 Identities=23% Similarity=0.348 Sum_probs=107.9
Q ss_pred CCccEEEccCCCCCCCCc--cccCCCCCCEEEccCCcCC-cCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCC-CcE
Q psy3966 56 ENIDTLLLYHNNLSFFPD--NASKFTNLRSLDLSNNRIT-HLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKN-LKV 130 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~Ls~n~l~-~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~ 130 (392)
++|++|++++|+++.+|. .++++++|++|++++|.++ .+| .+. +.+|++|++++|.++ .+|..+..+++ |++
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVEN 381 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcE
Confidence 345555555555555554 4555555555555555555 555 333 455555555555554 34444555555 555
Q ss_pred EeccCCCCcccCccccCCc--CCcEEECCCCCCCc-Cchhhc-------CCCCccEEEccCCCCcccchh-hcCCcCCCE
Q psy3966 131 FNLSGNQLEQFPIQILDIP--TLKYLYLGNNSLNH-VPREIN-------KLCKLHVLSLGGNSLTDIPDT-FGDLYQLEA 199 (392)
Q Consensus 131 L~l~~n~l~~l~~~l~~l~--~L~~L~l~~n~l~~-l~~~l~-------~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~ 199 (392)
|++++|.++.+|..+..++ +|++|++++|.+.. +|..+. .+++|++|++++|.++.+|.. +..+++|++
T Consensus 382 L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp EECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 5555555555554443322 45555555555542 333333 444555555555555555443 233555555
Q ss_pred EEccCCCCCCcchhhhC--------CcccceeeccCCcCCCCChhhH--hhhcccccCcEEEccCCCCCCCCccccCCCC
Q psy3966 200 LILSDNQLESLPASISN--------LKMLKSLLLHNNKLRTLPTEII--TLKCLSEKLKSLLLHNNKLRTLPTEIITLKC 269 (392)
Q Consensus 200 L~L~~n~l~~l~~~l~~--------l~~L~~L~L~~n~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~ 269 (392)
|++++|+++.+|..... +++|+.|++++|.++.+|..++ .+ ++|+.|++++|.++.+|..+..+++
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l----~~L~~L~Ls~N~l~~ip~~~~~l~~ 537 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL----PYLVGIDLSYNSFSKFPTQPLNSST 537 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC----TTCCEEECCSSCCSSCCCGGGGCSS
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC----CCcCEEECCCCCCCCcChhhhcCCC
Confidence 55555555544432211 1255555555555555554443 22 2555555555555555555555555
Q ss_pred CCEEeC
Q psy3966 270 LSELSL 275 (392)
Q Consensus 270 L~~L~l 275 (392)
|++|++
T Consensus 538 L~~L~L 543 (636)
T 4eco_A 538 LKGFGI 543 (636)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 555555
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.6e-29 Score=260.64 Aligned_cols=252 Identities=21% Similarity=0.329 Sum_probs=130.9
Q ss_pred CccccccccEEEeecCC-CCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc--cccCCCCCCEEEccCCcCCc
Q psy3966 17 DSFKTVSIKTLDFSYSS-LDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD--NASKFTNLRSLDLSNNRITH 93 (392)
Q Consensus 17 ~~~~~~~L~~LdLs~n~-l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~Ls~n~l~~ 93 (392)
.+.++++|++|+|++|. +++..++..+..+.. ....+++|++|+|++|+++.+|. .++++++|++|++++|.++.
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~ 587 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLAD--DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHH--CTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhh--cccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc
Confidence 34445555555555554 443223333332210 11223456666666666665555 55566666666666666655
Q ss_pred CCcccc-CccchhhhhhcCCCCCCCCCccCCCCCC-CcEEeccCCCCcccCccccCCc--CCcEEECCCCCCCcCch---
Q psy3966 94 LPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKN-LKVFNLSGNQLEQFPIQILDIP--TLKYLYLGNNSLNHVPR--- 166 (392)
Q Consensus 94 l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~l~~~l~~l~--~L~~L~l~~n~l~~l~~--- 166 (392)
+| .+. +.+|+.|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..++ +|++|++++|.+...++
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred ch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 55 333 555666666666555 45555555555 6666666666555554444332 25555555555542211
Q ss_pred -hhc--CCCCccEEEccCCCCcccchhh-cCCcCCCEEEccCCCCCCcchhhhC--------CcccceeeccCCcCCCCC
Q psy3966 167 -EIN--KLCKLHVLSLGGNSLTDIPDTF-GDLYQLEALILSDNQLESLPASISN--------LKMLKSLLLHNNKLRTLP 234 (392)
Q Consensus 167 -~l~--~~~~L~~L~l~~n~l~~l~~~l-~~l~~L~~L~L~~n~l~~l~~~l~~--------l~~L~~L~L~~n~l~~~~ 234 (392)
.+. .+++|++|++++|.++.+|..+ ..+++|++|++++|.++.+|..+.. +++|+.|++++|.++.+|
T Consensus 665 ~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp 744 (876)
T 4ecn_A 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744 (876)
T ss_dssp SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC
T ss_pred hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch
Confidence 111 2235556666666655555433 2555666666666665555543222 225666666666665555
Q ss_pred hhhH--hhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcC
Q psy3966 235 TEII--TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRD 277 (392)
Q Consensus 235 ~~~~--~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~ 277 (392)
..+. .+ ++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus 745 ~~l~~~~l----~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 745 DDFRATTL----PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGGSTTTC----TTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred HHhhhccC----CCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence 5443 22 256666666666655555555566666666644
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3e-29 Score=258.69 Aligned_cols=263 Identities=28% Similarity=0.391 Sum_probs=198.0
Q ss_pred CCCCccccc-cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CCCccccCCCCCCEEEccCCcC
Q psy3966 14 SDSDSFKTV-SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRI 91 (392)
Q Consensus 14 ~~~~~~~~~-~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~Ls~n~l 91 (392)
....+.+++ +|++||+++|.+++........ ..+++|++|++++|.++ .+|..+.++++|++|++++|++
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTC--------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhh--------cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 344455666 8999999999876633222111 12567888888888887 6777788888888888888887
Q ss_pred C-cCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc-ccCccccCCcCCcEEECCCCCCC-cCchh
Q psy3966 92 T-HLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPRE 167 (392)
Q Consensus 92 ~-~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~ 167 (392)
+ .+|..+. +.+|++|++++|.+.+ .+|..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+. .+|..
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 7 5666666 7788888888888875 67777888888888888888887 56777777888888888888887 67777
Q ss_pred hcCCCCccEEEccCCCCc-ccchhhcCCcCCCEEEccCCCCC-Ccchh--------------------------------
Q psy3966 168 INKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPAS-------------------------------- 213 (392)
Q Consensus 168 l~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~-------------------------------- 213 (392)
+..+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 888888888888888887 56777888888888888888765 44432
Q ss_pred --------------------------------------hhCCcccceeeccCCcCC-CCChhhHhhhcccccCcEEEccC
Q psy3966 214 --------------------------------------ISNLKMLKSLLLHNNKLR-TLPTEIITLKCLSEKLKSLLLHN 254 (392)
Q Consensus 214 --------------------------------------l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~ 254 (392)
+..+++|+.|++++|+++ .+|..+..+. .|+.|++++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~----~L~~L~Ls~ 665 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP----YLFILNLGH 665 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT----TCCEEECCS
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc----cCCEEeCcC
Confidence 223466788888888887 6777766654 788888888
Q ss_pred CCCC-CCCccccCCCCCCEEeCcCCCCccccccCcc
Q psy3966 255 NKLR-TLPTEIITLKCLSELSLRDNPLVIRFVSDMT 289 (392)
Q Consensus 255 n~l~-~l~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 289 (392)
|.++ .+|..+..+++|+.||+++|++++.++..+.
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 8887 7788888888888888888888877765544
No 5
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-28 Score=228.98 Aligned_cols=241 Identities=24% Similarity=0.345 Sum_probs=172.8
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcC-Ccccc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHL-PQAIT 99 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l-~~~~~ 99 (392)
.++++++++++.++. ++. ..++++++|++++|+++.++. .+.++++|++|++++|.++.+ |..+.
T Consensus 31 c~l~~l~~~~~~l~~--lp~-----------~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK--VPK-----------DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97 (330)
T ss_dssp EETTEEECTTSCCCS--CCC-----------SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CCCeEEEecCCCccc--cCc-----------cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc
Confidence 467888888877653 111 123578888888888886655 577788888888888888766 44454
Q ss_pred -CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCCCCCC---cCchhhcCCCCc
Q psy3966 100 -NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLN---HVPREINKLCKL 174 (392)
Q Consensus 100 -~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~---~l~~~l~~~~~L 174 (392)
+.+|++|++++|.++ .+|..+. ++|++|++++|.++.++.. +..+++|++|++++|.+. ..+..+..+++|
T Consensus 98 ~l~~L~~L~Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 98 PLVKLERLYLSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TCTTCCEEECCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCCCCCEEECCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 777888888888776 3454443 6788888888888766543 556788888888888776 335567777888
Q ss_pred cEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChh-hHhhhcccccCcEEEc
Q psy3966 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTE-IITLKCLSEKLKSLLL 252 (392)
Q Consensus 175 ~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~L~~L~l 252 (392)
++|++++|.++.+|..+. ++|++|++++|.++.+ +..+..+++|+.|++++|.+++++.. +..+ ++|+.|++
T Consensus 174 ~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~L 247 (330)
T 1xku_A 174 SYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT----PHLRELHL 247 (330)
T ss_dssp CEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS----TTCCEEEC
T ss_pred CEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC----CCCCEEEC
Confidence 888888888887776543 6788888888888755 45677788888888888888766542 3332 47888888
Q ss_pred cCCCCCCCCccccCCCCCCEEeCcCCCCccccc
Q psy3966 253 HNNKLRTLPTEIITLKCLSELSLRDNPLVIRFV 285 (392)
Q Consensus 253 ~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~ 285 (392)
++|.++.+|..+..+++|++|++++|++++...
T Consensus 248 ~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp CSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred CCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence 888888888777778888888888888775433
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.4e-29 Score=255.76 Aligned_cols=263 Identities=20% Similarity=0.255 Sum_probs=226.1
Q ss_pred CCCCcc--ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCC-CCC--CCccccCC------CCCC
Q psy3966 14 SDSDSF--KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNN-LSF--FPDNASKF------TNLR 82 (392)
Q Consensus 14 ~~~~~~--~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~-l~~--i~~~l~~l------~~L~ 82 (392)
...... ++++|++|+|++|.+.+. ++..+ +.+++|++|++++|+ ++. +|..++.+ ++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l---------~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFL---------KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSS-CCTTT---------TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCcc-ChHHH---------hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 556666 899999999999998763 33222 457899999999998 884 88888776 9999
Q ss_pred EEEccCCcCCcCCc--ccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcC-CcEEECCC
Q psy3966 83 SLDLSNNRITHLPQ--AIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPT-LKYLYLGN 158 (392)
Q Consensus 83 ~L~Ls~n~l~~l~~--~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~-L~~L~l~~ 158 (392)
+|++++|+++.+|. .+. +.+|++|++++|.+++ .+| .+..+++|++|++++|.++.+|..+..+++ |++|++++
T Consensus 309 ~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 99999999999998 777 8999999999999985 677 889999999999999999999999999999 99999999
Q ss_pred CCCCcCchhhcCCC--CccEEEccCCCCcc-cchhhc-------CCcCCCEEEccCCCCCCcchh-hhCCcccceeeccC
Q psy3966 159 NSLNHVPREINKLC--KLHVLSLGGNSLTD-IPDTFG-------DLYQLEALILSDNQLESLPAS-ISNLKMLKSLLLHN 227 (392)
Q Consensus 159 n~l~~l~~~l~~~~--~L~~L~l~~n~l~~-l~~~l~-------~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~ 227 (392)
|.++.+|..+.... +|++|++++|.+.. +|..+. .+++|++|++++|.++.+|.. +..+++|+.|++++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 99999998877655 89999999999985 566677 778999999999999999875 56689999999999
Q ss_pred CcCCCCChhhHhhhc----ccccCcEEEccCCCCCCCCcccc--CCCCCCEEeCcCCCCccccccCcc
Q psy3966 228 NKLRTLPTEIITLKC----LSEKLKSLLLHNNKLRTLPTEII--TLKCLSELSLRDNPLVIRFVSDMT 289 (392)
Q Consensus 228 n~l~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~l~~~l~--~l~~L~~L~l~~N~l~~~~~~~~~ 289 (392)
|.++.+|...+.... ..++|+.|++++|.++.+|..+. .+++|++|++++|++++ ++..+.
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence 999988876554220 11289999999999999999987 89999999999999987 554443
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4.6e-29 Score=257.30 Aligned_cols=263 Identities=28% Similarity=0.390 Sum_probs=209.5
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CCCccccC--CCCCCEEEccCCcCC-c
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNASK--FTNLRSLDLSNNRIT-H 93 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~--l~~L~~L~Ls~n~l~-~ 93 (392)
+.++++|++|++++|.+++. ++..+..+ .++|++|++++|+++ .+|..+.. +++|++|++++|.++ .
T Consensus 339 l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l--------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 339 LLKMRGLKVLDLSFNEFSGE-LPESLTNL--------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp HTTCTTCCEEECCSSEEEEC-CCTTHHHH--------TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred HhcCCCCCEEeCcCCccCcc-ccHHHHhh--------hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 56788899999999987653 22223221 137889999999887 56666655 788999999999887 6
Q ss_pred CCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc-ccCccccCCcCCcEEECCCCCCC-cCchhhcC
Q psy3966 94 LPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINK 170 (392)
Q Consensus 94 l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~ 170 (392)
+|..+. +.+|++|++++|.+++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCHHHhcCCCCCEEECcCCcccC-cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 777776 8889999999998876 67888888899999999999888 67777888889999999999888 67888888
Q ss_pred CCCccEEEccCCCCc-ccchhhcCCcCCCEEEccCCCCC-CcchhhhCCcccceeeccCCcCC-CCChhhHhhh------
Q psy3966 171 LCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITLK------ 241 (392)
Q Consensus 171 ~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~------ 241 (392)
+++|++|++++|+++ .+|..++.+++|++|++++|+++ .+|..+..+++|+.|++++|.++ .+|..++...
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 899999999999888 67888888899999999999888 77888888899999999999887 6666554311
Q ss_pred ------------------------------------------------------------cccccCcEEEccCCCCC-CC
Q psy3966 242 ------------------------------------------------------------CLSEKLKSLLLHNNKLR-TL 260 (392)
Q Consensus 242 ------------------------------------------------------------~~~~~L~~L~l~~n~l~-~l 260 (392)
...++|+.|++++|+++ .+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 01246888999999987 78
Q ss_pred CccccCCCCCCEEeCcCCCCccccccCccC
Q psy3966 261 PTEIITLKCLSELSLRDNPLVIRFVSDMTY 290 (392)
Q Consensus 261 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 290 (392)
|..+..++.|+.|++++|.+++.++..+..
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 888888999999999999998887765543
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.6e-29 Score=260.78 Aligned_cols=264 Identities=19% Similarity=0.287 Sum_probs=179.9
Q ss_pred CCCCccccccccEEEeecCCCCchhhHhhhh---------cccCCcCCC--CCCCccEEEccCCCCC-CCCccccCCCCC
Q psy3966 14 SDSDSFKTVSIKTLDFSYSSLDSETLATQIE---------LLPNNDYNK--KPENIDTLLLYHNNLS-FFPDNASKFTNL 81 (392)
Q Consensus 14 ~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~---------~l~~~~~~~--~~~~L~~L~L~~n~l~-~i~~~l~~l~~L 81 (392)
.+..+.++++|++|||++|.++++.++.... .++ ...+ .+++|++|+|++|++. .+|..++++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC--hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 3456778999999999999998732111000 011 1122 5688999999999866 788888889999
Q ss_pred CEEEccCCc-CCc--CCcccc-Cc-------cchhhhhhcCCCCCCCCCc--cCCCCCCCcEEeccCCCCcccCccccCC
Q psy3966 82 RSLDLSNNR-ITH--LPQAIT-NF-------PLSTLIARNNLLTAESLPK--DMSNLKNLKVFNLSGNQLEQFPIQILDI 148 (392)
Q Consensus 82 ~~L~Ls~n~-l~~--l~~~~~-~~-------~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~l~~~l~~l 148 (392)
++|++++|+ ++. +|..+. +. +|++|++++|.++ .+|. .+.++++|++|++++|.++.+| .+..+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 999999997 774 766554 33 7888888888887 5777 7888888888888888888777 77778
Q ss_pred cCCcEEECCCCCCCcCchhhcCCCC-ccEEEccCCCCcccchhhcCCcC--CCEEEccC---------------------
Q psy3966 149 PTLKYLYLGNNSLNHVPREINKLCK-LHVLSLGGNSLTDIPDTFGDLYQ--LEALILSD--------------------- 204 (392)
Q Consensus 149 ~~L~~L~l~~n~l~~l~~~l~~~~~-L~~L~l~~n~l~~l~~~l~~l~~--L~~L~L~~--------------------- 204 (392)
++|++|++++|.+..+|..+..+++ |++|++++|.++.+|..+..++. |++|++++
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 8888888888888888877888877 88888888888777765544332 44555544
Q ss_pred --------CCCCCcchhh-hCCcccceeeccCCcCCCCChhhHhhhc----ccccCcEEEccCCCCCCCCcccc--CCCC
Q psy3966 205 --------NQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKC----LSEKLKSLLLHNNKLRTLPTEII--TLKC 269 (392)
Q Consensus 205 --------n~l~~l~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~l~~~l~--~l~~ 269 (392)
|.++.+|..+ ..+++|+.|++++|.++.+|...+.... .+++|+.|++++|+++.+|..+. .+++
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC
Confidence 4444444432 3455566666666655555554332110 11256666666666666666665 5666
Q ss_pred CCEEeCcCCCCcc
Q psy3966 270 LSELSLRDNPLVI 282 (392)
Q Consensus 270 L~~L~l~~N~l~~ 282 (392)
|+.|++++|++++
T Consensus 755 L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 755 LSNMDVSYNCFSS 767 (876)
T ss_dssp CCEEECCSSCCSS
T ss_pred cCEEEeCCCCCCc
Confidence 6666666666654
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.7e-28 Score=231.23 Aligned_cols=244 Identities=25% Similarity=0.266 Sum_probs=157.3
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCccc
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAI 98 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~ 98 (392)
.+++|++|++++|.+++... ..+..+++|++|++++|.++.++ ..++++++|++|++++|.++.+|...
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 136 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDT----------YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136 (390)
T ss_dssp HCCCCSEEECTTSCCCEECT----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccccCcEEECCCCcccccCh----------hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHH
Confidence 44555555555555543110 01234566777777777776553 33566777777777777777666654
Q ss_pred -c-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCc-------------------EEECC
Q psy3966 99 -T-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLK-------------------YLYLG 157 (392)
Q Consensus 99 -~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~-------------------~L~l~ 157 (392)
. +++|++|++++|.+.. ..+..+..+++|++|++++|.++.++ +..+++|+ +|+++
T Consensus 137 ~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~ 213 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 213 (390)
T ss_dssp TTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECC
T ss_pred hcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECC
Confidence 2 6667777777776664 44555666777777777777666443 22233333 33333
Q ss_pred CCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChh
Q psy3966 158 NNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTE 236 (392)
Q Consensus 158 ~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~ 236 (392)
+|.+..+|.. ..++|++|++++|.++.. +.+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++.++..
T Consensus 214 ~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (390)
T 3o6n_A 214 HNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290 (390)
T ss_dssp SSCCCEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS
T ss_pred CCeeeecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc
Confidence 3333332221 234677777777777765 4577888888888888888855 56788888888888888888876654
Q ss_pred hHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccc
Q psy3966 237 IITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
...+ ++|+.|++++|.++.+|..+..+++|++|++++|+++..
T Consensus 291 ~~~l----~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 291 GQPI----PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp SSCC----TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cCCC----CCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence 4333 478888888888888888887888888888888888643
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.7e-29 Score=230.30 Aligned_cols=221 Identities=23% Similarity=0.305 Sum_probs=187.4
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEec
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 133 (392)
..++++|+|++|.++.+|..+.++++|++|++++|.++.+|..+. +.+|++|++++|.+. .+|..+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEEC
Confidence 367888888888888888888888888888888888888887776 788888888888887 56888888999999999
Q ss_pred cCCCCc-ccCccccC---------CcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEcc
Q psy3966 134 SGNQLE-QFPIQILD---------IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203 (392)
Q Consensus 134 ~~n~l~-~l~~~l~~---------l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~ 203 (392)
++|++. .+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 986544 66766543 89999999999999999999999999999999999999998889999999999999
Q ss_pred CCCCC-CcchhhhCCcccceeeccCCcCC-CCChhhHhhhcccccCcEEEccCCCC-CCCCccccCCCCCCEEeCcCCCC
Q psy3966 204 DNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITLKCLSEKLKSLLLHNNKL-RTLPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 204 ~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~n~l-~~l~~~l~~l~~L~~L~l~~N~l 280 (392)
+|.+. .+|..+..+++|+.|++++|.+. .+|..+..+. +|+.|++++|.+ +.+|..+..+++|+.+++..+.+
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~----~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT----QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT----TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC----CCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 98776 77788999999999999998765 7777766554 899999999886 48999999999999999987765
Q ss_pred c
Q psy3966 281 V 281 (392)
Q Consensus 281 ~ 281 (392)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.6e-28 Score=235.91 Aligned_cols=109 Identities=25% Similarity=0.346 Sum_probs=86.0
Q ss_pred CCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcE
Q psy3966 172 CKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKS 249 (392)
Q Consensus 172 ~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 249 (392)
++|++|++++|.+..+ |..++.+++|++|++++|.++.+ |..+..+++|++|++++|.++++++..+. ..++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~ 351 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE---NLDKLEV 351 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT---TCTTCCE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc---CcccCCE
Confidence 4567777777777654 56788899999999999999866 45788899999999999999877554322 2248999
Q ss_pred EEccCCCCCCC-CccccCCCCCCEEeCcCCCCccc
Q psy3966 250 LLLHNNKLRTL-PTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 250 L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
|++++|.++.+ |..+..+++|++|++++|++++.
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccC
Confidence 99999999866 66788899999999999998753
No 12
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9e-28 Score=223.58 Aligned_cols=243 Identities=24% Similarity=0.377 Sum_probs=197.3
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcC-Ccccc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHL-PQAIT 99 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l-~~~~~ 99 (392)
.+++.++++++.++. ++.. .+++|++|++++|.++.++ ..+.++++|++|++++|.++.+ |..+.
T Consensus 33 c~l~~l~~~~~~l~~--ip~~-----------~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 99 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKA--VPKE-----------ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS 99 (332)
T ss_dssp EETTEEECCSSCCSS--CCSC-----------CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST
T ss_pred ccCCEEECCCCCccc--cCCC-----------CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh
Confidence 478999999998753 2211 2368999999999998664 4688999999999999999977 44455
Q ss_pred -CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCCCCCC---cCchhhcCCCCc
Q psy3966 100 -NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLN---HVPREINKLCKL 174 (392)
Q Consensus 100 -~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~---~l~~~l~~~~~L 174 (392)
+.+|++|++++|.++ .+|..+. ++|++|++++|.++.++.. +..+++|++|++++|.++ ..+..+..+ +|
T Consensus 100 ~l~~L~~L~L~~n~l~--~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLV--EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TCTTCCEEECCSSCCC--SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred CcCCCCEEECCCCcCC--ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 889999999999987 4565554 7899999999999988764 667999999999999986 335556666 89
Q ss_pred cEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcc-hhhhCCcccceeeccCCcCCCCChh-hHhhhcccccCcEEEc
Q psy3966 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTE-IITLKCLSEKLKSLLL 252 (392)
Q Consensus 175 ~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~L~~L~l 252 (392)
++|++++|.++.+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.++.++.. +..+ ++|+.|++
T Consensus 175 ~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l----~~L~~L~L 248 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL----PTLRELHL 248 (332)
T ss_dssp SCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC----TTCCEEEC
T ss_pred CEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC----CCCCEEEC
Confidence 999999999998887654 78999999999999776 5788899999999999999987763 3333 48999999
Q ss_pred cCCCCCCCCccccCCCCCCEEeCcCCCCccccccCc
Q psy3966 253 HNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDM 288 (392)
Q Consensus 253 ~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 288 (392)
++|.++.+|..+..+++|++|++++|++++.....+
T Consensus 249 ~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 999999999999999999999999999986544433
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.4e-27 Score=219.57 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=99.7
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 134 (392)
+++|++|++++|+++.++. +..+++|++|++++|.++.++....+.+|++|++++|.+.. ++. +..+++|++|+++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD--ISP-LANLTKMYSLNLG 140 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC--CGG-GTTCTTCCEEECT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC--chh-hccCCceeEEECC
Confidence 3455555555555554444 45555555555555555554432225555555555555442 222 4445555555555
Q ss_pred CCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhh
Q psy3966 135 GNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI 214 (392)
Q Consensus 135 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l 214 (392)
+|.....+..+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 217 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-V 217 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-h
Confidence 55332222234445555555555555444432 4444555555555555544433 4444445555555544444333 4
Q ss_pred hCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCc
Q psy3966 215 SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 215 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
..+++|++|++++|.++.++. +.. .++|+.|++++|.++.++ .+..+++|++|++++|.++
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~-~~~----l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP-LAN----LSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTT----CTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred hcCCcCCEEEccCCccCCCcc-hhc----CCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccC
Confidence 444445555555544444433 111 124444444444444442 3444444444444444443
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.5e-27 Score=221.89 Aligned_cols=243 Identities=25% Similarity=0.355 Sum_probs=208.7
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCCccccC
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQAITN 100 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~ 100 (392)
+++++||+++|.+++... ..+..+++|++|++++|.++.+ |..+.++++|++|++++|.++.+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~- 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKD----------GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP- 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCT----------TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred CCCeEEECCCCcCCEeCh----------hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-
Confidence 689999999999876321 1224678999999999999976 7789999999999999999999887665
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc---ccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEE
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE---QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVL 177 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L 177 (392)
.+|++|++++|.+.. ..+..+.++++|++|++++|.++ ..+..+..+++|++|++++|.++.+|..+. ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEE
Confidence 789999999999985 45567899999999999999987 345567789999999999999999887664 799999
Q ss_pred EccCCCCccc-chhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCC
Q psy3966 178 SLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255 (392)
Q Consensus 178 ~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 255 (392)
++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|++|++++|.++.+|..+..+ ++|+.|++++|
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l----~~L~~L~l~~N 273 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH----KYIQVVYLHNN 273 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC----SSCCEEECCSS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC----CCcCEEECCCC
Confidence 9999999977 5789999999999999999997765 7899999999999999999999876655 48999999999
Q ss_pred CCCCCCcccc-------CCCCCCEEeCcCCCCcc
Q psy3966 256 KLRTLPTEII-------TLKCLSELSLRDNPLVI 282 (392)
Q Consensus 256 ~l~~l~~~l~-------~l~~L~~L~l~~N~l~~ 282 (392)
.++.++.... ....++.|++++|++..
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccc
Confidence 9998875433 24789999999999863
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-27 Score=239.23 Aligned_cols=243 Identities=25% Similarity=0.269 Sum_probs=138.3
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCccc
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQAI 98 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~~~ 98 (392)
.+++|++|+|++|.+++... ..+..+++|++|+|++|.++.++. .++++++|++|+|++|.++.+|...
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 142 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDT----------YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142 (597)
T ss_dssp HCCCCSEEECTTSCCCEECT----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCCCcEEECCCCCCCCCCh----------HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH
Confidence 35566666666666554110 012345677777777777775544 3567777777777777777776654
Q ss_pred c--CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCC-----------------
Q psy3966 99 T--NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNN----------------- 159 (392)
Q Consensus 99 ~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n----------------- 159 (392)
+ +.+|++|++++|.++. ..|..+..+++|++|++++|.++.++ +..+++|++|++++|
T Consensus 143 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 143 FHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred hccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 2 6677777777777764 45556677777777777777766543 122333333333332
Q ss_pred --CCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChh
Q psy3966 160 --SLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTE 236 (392)
Q Consensus 160 --~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~ 236 (392)
.+..++..+ .++|+.|++++|.++.. ..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++.+|..
T Consensus 220 ~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 296 (597)
T 3oja_B 220 HNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296 (597)
T ss_dssp SSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS
T ss_pred CCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc
Confidence 222221111 12455555555555443 3455566666666666666633 44566666666666666666655443
Q ss_pred hHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 237 IITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
...+ ++|+.|++++|.++.+|..+..+++|++|++++|++++
T Consensus 297 ~~~l----~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 297 GQPI----PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp SSCC----TTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred cccC----CCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC
Confidence 3222 35666666666666666666566666666666666653
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1e-28 Score=228.00 Aligned_cols=225 Identities=26% Similarity=0.348 Sum_probs=202.8
Q ss_pred CCccEEEccCCCCC---CCCccccCCCCCCEEEccC-CcCC-cCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCc
Q psy3966 56 ENIDTLLLYHNNLS---FFPDNASKFTNLRSLDLSN-NRIT-HLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLK 129 (392)
Q Consensus 56 ~~L~~L~L~~n~l~---~i~~~l~~l~~L~~L~Ls~-n~l~-~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 129 (392)
.++++|+|++|.++ .+|..+.++++|++|++++ |.+. .+|..+. +.+|++|++++|.+++ .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCC
Confidence 57999999999998 5899999999999999995 8877 7888777 9999999999999985 6788999999999
Q ss_pred EEeccCCCCc-ccCccccCCcCCcEEECCCCCCC-cCchhhcCCC-CccEEEccCCCCc-ccchhhcCCcCCCEEEccCC
Q psy3966 130 VFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLC-KLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDN 205 (392)
Q Consensus 130 ~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~l~-~l~~~l~~~~-~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n 205 (392)
+|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..+..++ |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999999999 78888999999999999999998 8899999998 9999999999999 6788888887 999999999
Q ss_pred CCC-CcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCC-CCCccccCCCCCCEEeCcCCCCccc
Q psy3966 206 QLE-SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 206 ~l~-~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
.++ ..|..+..+++|+.|++++|.++..++.+.. .++|++|++++|.++ .+|..+..+++|++|++++|++++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL----SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC----CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccc----cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 998 5667889999999999999999865555433 359999999999998 8899999999999999999999987
Q ss_pred ccc
Q psy3966 284 FVS 286 (392)
Q Consensus 284 ~~~ 286 (392)
++.
T Consensus 284 ip~ 286 (313)
T 1ogq_A 284 IPQ 286 (313)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.7e-28 Score=224.43 Aligned_cols=225 Identities=26% Similarity=0.334 Sum_probs=198.5
Q ss_pred cccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc-
Q psy3966 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT- 99 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~- 99 (392)
..++++|||++|.++. ++..+. .+++|++|+|++|.++.+|..++++++|++|++++|.++.+|..+.
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~l~---------~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 148 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQAF---------RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS 148 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSCGG---------GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred ccceeEEEccCCCchh--cChhhh---------hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence 3789999999999873 343333 3689999999999999999999999999999999999999998888
Q ss_pred CccchhhhhhcCCCCCCCCCccCCC---------CCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcC
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSN---------LKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINK 170 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~---------l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~ 170 (392)
+.+|++|++++|...+ .+|..+.. +++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+..
T Consensus 149 l~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 149 LNRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp CTTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred CcCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 9999999999988775 67766654 9999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEccCCCCc-ccchhhcCCcCCCEEEccCCCCC-CcchhhhCCcccceeeccCCcCC-CCChhhHhhhcccccC
Q psy3966 171 LCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITLKCLSEKL 247 (392)
Q Consensus 171 ~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~L 247 (392)
+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+. +|
T Consensus 228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~----~L 303 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP----AN 303 (328)
T ss_dssp CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC----TT
T ss_pred CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc----Cc
Confidence 999999999998877 67888999999999999998766 78888999999999999998765 8898888765 89
Q ss_pred cEEEccCCCCCCCC
Q psy3966 248 KSLLLHNNKLRTLP 261 (392)
Q Consensus 248 ~~L~l~~n~l~~l~ 261 (392)
+.+++..+.+..++
T Consensus 304 ~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 304 CIILVPPHLQAQLD 317 (328)
T ss_dssp CEEECCGGGSCC--
T ss_pred eEEeCCHHHHHHHh
Confidence 99999987766543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=236.74 Aligned_cols=129 Identities=29% Similarity=0.371 Sum_probs=73.3
Q ss_pred CcCCcEEECCCCCCCc-CchhhcCCCCccEEEccCCCCcc---cchhhcCCcCCCEEEccCCCCCC-cchh-hhCCcccc
Q psy3966 148 IPTLKYLYLGNNSLNH-VPREINKLCKLHVLSLGGNSLTD---IPDTFGDLYQLEALILSDNQLES-LPAS-ISNLKMLK 221 (392)
Q Consensus 148 l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~l~~---l~~~l~~l~~L~~L~L~~n~l~~-l~~~-l~~l~~L~ 221 (392)
+++|++|++++|.++. +|..+..+++|++|++++|+++. +|..++.+++|++|++++|.++. +|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 3444444444444443 34444445555555555555542 22344455555555555555553 4432 44445555
Q ss_pred eeeccCCcCCC-CChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 222 SLLLHNNKLRT-LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 222 ~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
+|++++|.+++ +|.. .+++|+.|++++|+++.+|..+..+++|++|++++|+++.
T Consensus 403 ~L~Ls~N~l~~~~~~~------l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRC------LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp EEECCSSCCCGGGGGS------CCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred EEECcCCCCCcchhhh------hcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc
Confidence 55555555431 1111 1147888888888888888888888888888888888873
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=231.78 Aligned_cols=247 Identities=24% Similarity=0.330 Sum_probs=148.8
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCCcccc-
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQAIT- 99 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~~~~~- 99 (392)
+++++|||++|.+++... . .+..+++|++|+|++|.++.+ |..|.++++|++|+|++|+++.++...+
T Consensus 32 ~~l~~L~L~~n~l~~~~~-~---------~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQ-D---------EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSSCCCEECT-T---------TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSST
T ss_pred CCCcEEECCCCccceECH-h---------HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccccc
Confidence 467788888887765211 1 123456777777777777744 5567777777777777777777766543
Q ss_pred -CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCccc-CccccCCcCCcEEECCCCCCCcCch-hhcCCCCccE
Q psy3966 100 -NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLNHVPR-EINKLCKLHV 176 (392)
Q Consensus 100 -~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~ 176 (392)
+.+|++|++++|.+.. ..+..+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.
T Consensus 102 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 102 GLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred CCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 6777777777777764 4455667777777777777777654 3345566777777777777766543 3556666666
Q ss_pred EEccCCCCcccch-hhcCCc------------------------CCCEEEccCCCCCCcch-hhhCCcccceeeccCCcC
Q psy3966 177 LSLGGNSLTDIPD-TFGDLY------------------------QLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKL 230 (392)
Q Consensus 177 L~l~~n~l~~l~~-~l~~l~------------------------~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l 230 (392)
|++++|.+..++. .+..++ +|++|++++|+++.+|. .+..+++|+.|++++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 6666665554422 233333 44444455555555553 455666666666666666
Q ss_pred CCCChhhHhhhcccccCcEEEccCCCCCCC-CccccCCCCCCEEeCcCCCCcc
Q psy3966 231 RTLPTEIITLKCLSEKLKSLLLHNNKLRTL-PTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
+.++...+. ..++|+.|++++|.++.+ |..+..+++|++|++++|.+++
T Consensus 261 ~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 261 STIEGSMLH---ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp CEECTTSCT---TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CccChhhcc---ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 654433211 113566666666665543 3445556666666666665553
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.3e-26 Score=216.94 Aligned_cols=243 Identities=23% Similarity=0.322 Sum_probs=204.8
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCC-cCCc
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT-HLPQ 96 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~-~l~~ 96 (392)
+..+++|++|++++|.+++. + .+ ..+++|++|++++|.++.++. +..+++|++|++++|... .++.
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~-~~---------~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~ 150 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--S-AL---------QNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP 150 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--G-GG---------TTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG
T ss_pred hhcCCcCCEEEccCCcccCc--h-HH---------cCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc
Confidence 77899999999999998762 1 12 457899999999999998876 889999999999999644 5554
Q ss_pred cccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccE
Q psy3966 97 AITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176 (392)
Q Consensus 97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~ 176 (392)
...+.+|++|++++|.+.. ++. +..+++|++|++++|.++.++. +..+++|+++++++|.+..++. +..+++|++
T Consensus 151 ~~~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~ 225 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKD--VTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNS 225 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred hhhCCCCcEEEecCCCcCC--chh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCE
Confidence 3338999999999999874 332 7889999999999999998875 7789999999999999998755 888999999
Q ss_pred EEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC
Q psy3966 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 177 L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 256 (392)
|++++|.++.++. +..+++|++|++++|.++.+ ..+..+++|+.|++++|.+++++. +.. .++|+.|++++|.
T Consensus 226 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~----l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 226 LKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISV-LNN----LSQLNSLFLNNNQ 298 (347)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGG----CTTCSEEECCSSC
T ss_pred EEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChh-hcC----CCCCCEEECcCCc
Confidence 9999999998876 88999999999999999987 468889999999999999988742 333 3589999999999
Q ss_pred CCCC-CccccCCCCCCEEeCcCCCCccccc
Q psy3966 257 LRTL-PTEIITLKCLSELSLRDNPLVIRFV 285 (392)
Q Consensus 257 l~~l-~~~l~~l~~L~~L~l~~N~l~~~~~ 285 (392)
++.. |..+..+++|++|++++|++++..+
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCcChhHhhccccCCEEEccCCccccccC
Confidence 9855 5668889999999999999986543
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-27 Score=219.41 Aligned_cols=241 Identities=27% Similarity=0.337 Sum_probs=202.6
Q ss_pred cEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCcc-ccCCCCCCEEEccCCcCCcC---Ccccc-
Q psy3966 25 KTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDN-ASKFTNLRSLDLSNNRITHL---PQAIT- 99 (392)
Q Consensus 25 ~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~Ls~n~l~~l---~~~~~- 99 (392)
+.++++++.++. ++. ..+++|++|++++|+++.+|.. +.++++|++|++++|.++.+ +..+.
T Consensus 10 ~~l~c~~~~l~~--ip~-----------~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPT-----------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCSS--CCS-----------CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred CEEEcCCCCccc--CCC-----------CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence 578999888764 121 1246899999999999988875 68999999999999999855 34444
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc--cccCCcCCcEEECCCCCCCcC-chhhcCCCCccE
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI--QILDIPTLKYLYLGNNSLNHV-PREINKLCKLHV 176 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~ 176 (392)
+.+|++|++++|.+. .++..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..+ +..+..+++|++
T Consensus 77 ~~~L~~L~Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccCEEECCCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 889999999999987 467778899999999999999997764 677899999999999999854 566888999999
Q ss_pred EEccCCCCcc--cchhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEcc
Q psy3966 177 LSLGGNSLTD--IPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLH 253 (392)
Q Consensus 177 L~l~~n~l~~--l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 253 (392)
|++++|.+.. +|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+++++..... ..++|+.|+++
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~ 231 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK---CLNSLQVLDYS 231 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT---TCTTCCEEECT
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc---CcccCCEeECC
Confidence 9999999985 688899999999999999999976 56789999999999999999987764322 23589999999
Q ss_pred CCCCCC-CCccccCC-CCCCEEeCcCCCCccc
Q psy3966 254 NNKLRT-LPTEIITL-KCLSELSLRDNPLVIR 283 (392)
Q Consensus 254 ~n~l~~-l~~~l~~l-~~L~~L~l~~N~l~~~ 283 (392)
+|.++. .|..+..+ ++|++|++++|++++.
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999985 46677777 4999999999999764
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.9e-27 Score=224.15 Aligned_cols=244 Identities=23% Similarity=0.266 Sum_probs=195.5
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCc
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQ 96 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~ 96 (392)
...+.++++|+++++.++.. +..+. ..+++|++|++++|.++.++. .+..+++|++|++++|.++.+++
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l--~~~~~--------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKL--PAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp SGGGCCCSEEEEESCEESEE--CTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCCceEEEecCCchhhC--ChhHh--------cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 34678999999999997652 22211 235799999999999997654 78999999999999999998876
Q ss_pred cc-c-CccchhhhhhcCCCCCCCCCc-cCCCCCCCcEEeccCCCCcccCc-cccCCcCCcEEECCCCCCCcCchhhcCCC
Q psy3966 97 AI-T-NFPLSTLIARNNLLTAESLPK-DMSNLKNLKVFNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLNHVPREINKLC 172 (392)
Q Consensus 97 ~~-~-~~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~~~ 172 (392)
.. . +.+|++|++++|.++ .+|. .+.++++|++|++++|.++.++. .+..+++|++|++++|.++.++ +..++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~ 186 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP 186 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCT
T ss_pred HHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--ccccc
Confidence 54 4 899999999999998 4554 46899999999999999997754 4778999999999999998763 33444
Q ss_pred CccE-------------------EEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCC
Q psy3966 173 KLHV-------------------LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233 (392)
Q Consensus 173 ~L~~-------------------L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~ 233 (392)
+|++ |++++|.+..+|. ...++|++|++++|.++.. ..+..+++|++|++++|.++++
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCc
Confidence 5554 4555555544433 2346899999999999876 4688999999999999999966
Q ss_pred -ChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 234 -PTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 234 -~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
|..+..+ ++|+.|++++|.++.+|..+..+++|++|++++|+++.
T Consensus 264 ~~~~~~~l----~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 264 MYHPFVKM----QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp ESGGGTTC----SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred ChhHcccc----ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee
Confidence 4444443 48999999999999998888889999999999999873
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.7e-27 Score=220.39 Aligned_cols=241 Identities=25% Similarity=0.361 Sum_probs=205.6
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCCccccC
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQAITN 100 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~ 100 (392)
+++++||+++|.+++.. +. .+..+++|++|++++|+++.+ |..+.++++|++|++++|.++.+|..+.
T Consensus 54 ~~l~~L~l~~n~i~~~~-~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~- 122 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELR-KD---------DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP- 122 (332)
T ss_dssp TTCCEEECCSSCCCEEC-TT---------TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-
T ss_pred CCCeEEECCCCcCCccC-Hh---------HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-
Confidence 68999999999987521 11 124578999999999999965 6779999999999999999999988776
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcc---cCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEE
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ---FPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVL 177 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L 177 (392)
.+|++|++++|.+.. ..+..+..+++|++|++++|.++. .+..+..+ +|++|++++|.++.+|..+. ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCC
T ss_pred ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEE
Confidence 899999999999984 445568999999999999999973 34445556 99999999999999987765 699999
Q ss_pred EccCCCCcccc-hhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCC
Q psy3966 178 SLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255 (392)
Q Consensus 178 ~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 255 (392)
++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+|..+..+. +|+.|++++|
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~----~L~~L~l~~N 274 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK----LLQVVYLHTN 274 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCT----TCCEEECCSS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCc----cCCEEECCCC
Confidence 99999999875 678999999999999999997765 78999999999999999999998876654 8999999999
Q ss_pred CCCCCCcc-ccC------CCCCCEEeCcCCCCc
Q psy3966 256 KLRTLPTE-IIT------LKCLSELSLRDNPLV 281 (392)
Q Consensus 256 ~l~~l~~~-l~~------l~~L~~L~l~~N~l~ 281 (392)
.++.++.. +.. ...|+.|++++|++.
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCccChhHccccccccccccccceEeecCccc
Confidence 99987653 322 467999999999987
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.3e-26 Score=230.99 Aligned_cols=135 Identities=25% Similarity=0.297 Sum_probs=114.3
Q ss_pred cCCcCCcEEECCCCCCCc-CchhhcCCCCccEEEccCCCCcccc---hhhcCCcCCCEEEccCCCCCC-cch-hhhCCcc
Q psy3966 146 LDIPTLKYLYLGNNSLNH-VPREINKLCKLHVLSLGGNSLTDIP---DTFGDLYQLEALILSDNQLES-LPA-SISNLKM 219 (392)
Q Consensus 146 ~~l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~L~~n~l~~-l~~-~l~~l~~ 219 (392)
..+++|++|++++|.++. +|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.++. +|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456789999999999986 6788899999999999999999654 568899999999999999996 876 4788899
Q ss_pred cceeeccCCcCCC-CChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccccccC
Q psy3966 220 LKSLLLHNNKLRT-LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSD 287 (392)
Q Consensus 220 L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~~ 287 (392)
|+.|++++|.+++ ++..+ +++|+.|++++|+++.+|..+..+++|++|++++|+++. ++..
T Consensus 430 L~~L~l~~n~l~~~~~~~l------~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCL------PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSC------CTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTT
T ss_pred CCEEECCCCCCCcchhhhh------cCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHH
Confidence 9999999999873 22221 148999999999999999988899999999999999983 4433
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.8e-27 Score=230.41 Aligned_cols=155 Identities=23% Similarity=0.327 Sum_probs=136.3
Q ss_pred CCCCCCcEEeccCCCCcc-cCccccCCcCCcEEECCCCCCCc---CchhhcCCCCccEEEccCCCCcc-cchh-hcCCcC
Q psy3966 123 SNLKNLKVFNLSGNQLEQ-FPIQILDIPTLKYLYLGNNSLNH---VPREINKLCKLHVLSLGGNSLTD-IPDT-FGDLYQ 196 (392)
Q Consensus 123 ~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~---l~~~l~~~~~L~~L~l~~n~l~~-l~~~-l~~l~~ 196 (392)
..+++|++|++++|.++. +|..+..+++|++|++++|.++. +|..+..+++|++|++++|.+.. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567889999999999985 67788889999999999999995 45678999999999999999997 8764 788999
Q ss_pred CCEEEccCCCCC-CcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEe
Q psy3966 197 LEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELS 274 (392)
Q Consensus 197 L~~L~L~~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~ 274 (392)
|++|++++|+++ .+|..+. ++|+.|++++|+++.+|..++.+. +|+.|++++|+++.+|.. +..+++|++|+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~----~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLE----ALQELNVASNQLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCT----TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCC----CCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence 999999999997 4444443 799999999999999998877654 999999999999999987 78899999999
Q ss_pred CcCCCCccc
Q psy3966 275 LRDNPLVIR 283 (392)
Q Consensus 275 l~~N~l~~~ 283 (392)
+++|++++.
T Consensus 475 l~~N~~~c~ 483 (520)
T 2z7x_B 475 LHTNPWDCS 483 (520)
T ss_dssp CCSSCBCCC
T ss_pred CcCCCCccc
Confidence 999999864
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=9e-27 Score=226.05 Aligned_cols=252 Identities=19% Similarity=0.255 Sum_probs=167.9
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CC-CccccCCCCCCEEEccCCcCCcC-Cccc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FF-PDNASKFTNLRSLDLSNNRITHL-PQAI 98 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i-~~~l~~l~~L~~L~Ls~n~l~~l-~~~~ 98 (392)
++|++|||++|.+++.. +..+ ..+++|++|++++|.+. .+ +..+.++++|++|++++|.++.+ |..+
T Consensus 30 ~~l~~L~Ls~n~i~~~~-~~~~---------~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELN-ETSF---------SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSCCCEEC-TTTT---------SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT
T ss_pred CccCEEEecCCccCcCC-hhHh---------ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc
Confidence 57888888888876521 1111 34567777777777775 44 34567777777777777777754 4444
Q ss_pred c-CccchhhhhhcCCCCCCCCCc--cCCCCCCCcEEeccCCCCccc-Ccc-ccCCcCCcEEECCCCCCCcC-chhhc---
Q psy3966 99 T-NFPLSTLIARNNLLTAESLPK--DMSNLKNLKVFNLSGNQLEQF-PIQ-ILDIPTLKYLYLGNNSLNHV-PREIN--- 169 (392)
Q Consensus 99 ~-~~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~l-~~~-l~~l~~L~~L~l~~n~l~~l-~~~l~--- 169 (392)
. +.+|++|++++|.+++ ..+. .+..+++|++|++++|.++.+ |.. +..+++|++|++++|.+..+ +..+.
T Consensus 100 ~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDG-AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTCTTCCEEECTTSCCBT-HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred cCcccCCEEeCCCCCCCc-cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 4 7777777777777764 2222 266777777777777777755 333 55677777777777776643 22222
Q ss_pred -------------------------------CCCCccEEEccCCCCcc-cchhhc-------------------------
Q psy3966 170 -------------------------------KLCKLHVLSLGGNSLTD-IPDTFG------------------------- 192 (392)
Q Consensus 170 -------------------------------~~~~L~~L~l~~n~l~~-l~~~l~------------------------- 192 (392)
.+++|++|++++|.++. +|..+.
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 33567777777777652 222211
Q ss_pred --------------CCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCCh-hhHhhhcccccCcEEEccCCC
Q psy3966 193 --------------DLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPT-EIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 193 --------------~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~ 256 (392)
..++|++|++++|.++.+ |..+..+++|++|++++|.++++++ .+..+ ++|+.|++++|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~Ls~N~ 334 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL----THLLKLNLSQNF 334 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC----TTCCEEECCSSC
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc----ccCCEEECCCCc
Confidence 125788888888888844 5567888888888888888886644 33333 488888888888
Q ss_pred CCCC-CccccCCCCCCEEeCcCCCCccccccCc
Q psy3966 257 LRTL-PTEIITLKCLSELSLRDNPLVIRFVSDM 288 (392)
Q Consensus 257 l~~l-~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 288 (392)
++.+ |..+..+++|++|++++|.+++..+..+
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 8866 4567778888888888888876654443
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=226.16 Aligned_cols=246 Identities=25% Similarity=0.285 Sum_probs=190.1
Q ss_pred ccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcC-Ccccc-C
Q psy3966 24 IKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHL-PQAIT-N 100 (392)
Q Consensus 24 L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l-~~~~~-~ 100 (392)
-+.++.+++.++. ++. ..++++++|+|++|+++.+ +..|.++++|++|+|++|.++.+ |..+. +
T Consensus 13 ~~~v~c~~~~l~~--ip~-----------~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 79 (477)
T 2id5_A 13 DRAVLCHRKRFVA--VPE-----------GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79 (477)
T ss_dssp TTEEECCSCCCSS--CCS-----------CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCEEEeCCCCcCc--CCC-----------CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC
Confidence 4689999988764 221 1246899999999999966 46789999999999999999977 44555 8
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCccc-CccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEE
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLS 178 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~ 178 (392)
.+|++|++++|.++. ..+..+.++++|++|++++|.++.+ +..+..+++|++|++++|.+..+ +..+..+++|++|+
T Consensus 80 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 80 FNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 999999999999984 4445688999999999999999966 55677899999999999999866 45788999999999
Q ss_pred ccCCCCcccch-hhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeec------------------------cCCcCCC
Q psy3966 179 LGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLL------------------------HNNKLRT 232 (392)
Q Consensus 179 l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L------------------------~~n~l~~ 232 (392)
+++|.++.++. .+..+++|+.|++++|.+..++. .+..+++|+.|++ ++|.++.
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 99999998864 68999999999999999986654 4555555555555 4555555
Q ss_pred CChhhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCcccccc
Q psy3966 233 LPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLVIRFVS 286 (392)
Q Consensus 233 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~~~~ 286 (392)
+|..... ..++|+.|++++|.++.++. .+..+++|++|++++|.+++..+.
T Consensus 239 ~~~~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 239 VPYLAVR---HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp CCHHHHT---TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred cCHHHhc---CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 5543221 12467777777777775543 456677777777777777655433
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=224.53 Aligned_cols=222 Identities=22% Similarity=0.307 Sum_probs=112.7
Q ss_pred CccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCcc-cc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEec
Q psy3966 57 NIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQA-IT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133 (392)
Q Consensus 57 ~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 133 (392)
+|++|++++|+++.++. .+.++++|++|++++|.++.++.. +. +.+|++|++++|.++. ..+..+.++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEEC
Confidence 44455555554444333 344444555555555544443321 22 4445555555444442 11122444445555555
Q ss_pred cCCCCcccCc--cccCCcCCcEEECCCC-CCCcC-chhhcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCC
Q psy3966 134 SGNQLEQFPI--QILDIPTLKYLYLGNN-SLNHV-PREINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLE 208 (392)
Q Consensus 134 ~~n~l~~l~~--~l~~l~~L~~L~l~~n-~l~~l-~~~l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~ 208 (392)
++|+++.++. .+..+++|++|++++| .++.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5554444443 2334445555555444 23333 22344444455555555544433 344444445555555555444
Q ss_pred Ccchh-hhCCcccceeeccCCcCCCC--------------------------------ChhhHhhhcccccCcEEEccCC
Q psy3966 209 SLPAS-ISNLKMLKSLLLHNNKLRTL--------------------------------PTEIITLKCLSEKLKSLLLHNN 255 (392)
Q Consensus 209 ~l~~~-l~~l~~L~~L~L~~n~l~~~--------------------------------~~~~~~~~~~~~~L~~L~l~~n 255 (392)
.++.. +..+++|+.|++++|.++++ |..+.. .++|+.|++++|
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~----l~~L~~L~Ls~N 287 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ----ISGLLELEFSRN 287 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT----CTTCCEEECCSS
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc----ccCCCEEECCCC
Confidence 44432 22344445555554444432 222322 348888999998
Q ss_pred CCCCCCccc-cCCCCCCEEeCcCCCCccc
Q psy3966 256 KLRTLPTEI-ITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 256 ~l~~l~~~l-~~l~~L~~L~l~~N~l~~~ 283 (392)
+++.+|..+ ..+++|++|++++|++.+.
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 888888775 6788889999998888754
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.1e-26 Score=233.66 Aligned_cols=114 Identities=24% Similarity=0.287 Sum_probs=78.9
Q ss_pred CccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCC
Q psy3966 17 DSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLP 95 (392)
Q Consensus 17 ~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~ 95 (392)
.+.++++|++|||++|.+++.. +. .+..+++|++|+|++|.++.+ |..++++++|++|++++|.++.++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~-~~---------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIE-DK---------AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEEC-TT---------TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred hccCCccCcEEeCCCCcccccC-HH---------HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 4556777777777777766421 11 123567788888888887755 666777888888888888877666
Q ss_pred -cccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcc
Q psy3966 96 -QAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ 140 (392)
Q Consensus 96 -~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (392)
..+. +.+|++|++++|.+....+|..+.++++|++|++++|.++.
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 3333 77778888887777654567777777777777777776653
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.4e-26 Score=231.06 Aligned_cols=253 Identities=22% Similarity=0.275 Sum_probs=211.0
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCc-ccc-C
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AIT-N 100 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~-~~~-~ 100 (392)
+|++|++++|.+++... ..+..+++|++|++++|+++.+|..+..+++|++|++++|.++.+++ .+. +
T Consensus 255 ~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFNISS----------NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSSCCT----------TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecCccCccCH----------HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 79999999999865211 12245789999999999999999999999999999999999997744 444 8
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCccc---CccccCCcCCcEEECCCCCCCcC-chhhcCCCCccE
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF---PIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHV 176 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~ 176 (392)
++|++|++++|.+.....+..+..+++|++|++++|.++.+ +..+..+++|++|++++|.+..+ |..+..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 99999999999988644455689999999999999999865 55678899999999999999865 667889999999
Q ss_pred EEccCCCCccc-c-hhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCC--CC--hhhHhhhcccccCcE
Q psy3966 177 LSLGGNSLTDI-P-DTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRT--LP--TEIITLKCLSEKLKS 249 (392)
Q Consensus 177 L~l~~n~l~~l-~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~--~~--~~~~~~~~~~~~L~~ 249 (392)
|++++|.+... + ..+..+++|++|++++|.++.. |..+..+++|++|++++|.+++ ++ ..+..+ ++|+.
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l----~~L~~ 480 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL----GRLEI 480 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC----TTCCE
T ss_pred EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC----CCccE
Confidence 99999999855 3 3488999999999999999854 5578899999999999999874 22 223333 48999
Q ss_pred EEccCCCCCCC-CccccCCCCCCEEeCcCCCCccccccCcc
Q psy3966 250 LLLHNNKLRTL-PTEIITLKCLSELSLRDNPLVIRFVSDMT 289 (392)
Q Consensus 250 L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 289 (392)
|++++|.++.+ |..+..+++|++|++++|++++..+..+.
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 99999999866 57788899999999999999887665543
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=222.50 Aligned_cols=254 Identities=24% Similarity=0.321 Sum_probs=208.9
Q ss_pred CCCCCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCc
Q psy3966 12 DSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNR 90 (392)
Q Consensus 12 ~~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~ 90 (392)
..|...-......+.++.++..++. ++. ...++++.|+|++|+++.++ ..|.++++|++|+|++|.
T Consensus 33 ~~Cp~~C~C~~~~~~v~c~~~~l~~--iP~-----------~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 99 (440)
T 3zyj_A 33 QTCPSVCSCSNQFSKVICVRKNLRE--VPD-----------GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99 (440)
T ss_dssp CCCCSSSEECTTSCEEECCSCCCSS--CCS-----------CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC
T ss_pred ccCCCCCEeCCCCCEEEeCCCCcCc--CCC-----------CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc
Confidence 3444433322346789999988764 222 12468999999999999664 678999999999999999
Q ss_pred CCcCCcccc--CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc-cccCCcCCcEEECCCC-CCCcCch
Q psy3966 91 ITHLPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI-QILDIPTLKYLYLGNN-SLNHVPR 166 (392)
Q Consensus 91 l~~l~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n-~l~~l~~ 166 (392)
++.++...+ +.+|++|++++|.++. ..+..+..+++|++|++++|.++.++. .+..+++|++|++++| .+..++.
T Consensus 100 i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 100 IRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CCccChhhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 998875443 8999999999999984 445578999999999999999998876 4667999999999994 5666655
Q ss_pred -hhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChhhHhhhccc
Q psy3966 167 -EINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLS 244 (392)
Q Consensus 167 -~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 244 (392)
.+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++...+. ..
T Consensus 179 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l 254 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD---NL 254 (440)
T ss_dssp TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST---TC
T ss_pred chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc---CC
Confidence 58899999999999999999975 78999999999999999976 56899999999999999999977654332 23
Q ss_pred ccCcEEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCccc
Q psy3966 245 EKLKSLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 245 ~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~ 283 (392)
++|+.|++++|+++.+|.. +..+++|+.|++++|++..+
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 5899999999999988765 56799999999999999754
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.7e-26 Score=232.22 Aligned_cols=254 Identities=23% Similarity=0.323 Sum_probs=142.8
Q ss_pred CCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCc
Q psy3966 15 DSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITH 93 (392)
Q Consensus 15 ~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~ 93 (392)
..++.++++|++|||++|.+.+.. +..+ ..+++|++|+|++|+++.+ |..++++++|++|++++|.++.
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~---------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIH-EDTF---------QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEEC-TTTT---------TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred hhHhccCccceEEECCCCccceeC-hhhc---------cCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 345677888888888888876521 1112 3456777777777777643 5566777777777777777776
Q ss_pred CC-cccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCccc-CccccCCcCCc--EEECCCCCCC------
Q psy3966 94 LP-QAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF-PIQILDIPTLK--YLYLGNNSLN------ 162 (392)
Q Consensus 94 l~-~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~--~L~l~~n~l~------ 162 (392)
++ ..+. +.+|++|++++|.+.....|..+ .+++|++|++++|.++.+ +..+..+++|+ +|++++|.+.
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred CCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 53 2333 66777777777776642333333 366666666666666644 22233344444 4444444433
Q ss_pred ---------------------------------------------------------------------cCchh-hcCCC
Q psy3966 163 ---------------------------------------------------------------------HVPRE-INKLC 172 (392)
Q Consensus 163 ---------------------------------------------------------------------~l~~~-l~~~~ 172 (392)
.++.. +..++
T Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp TTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred hhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcccc
Confidence 33222 44555
Q ss_pred CccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCC-CCChh-hHhhhcccccCcE
Q psy3966 173 KLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLR-TLPTE-IITLKCLSEKLKS 249 (392)
Q Consensus 173 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~-~~~~~-~~~~~~~~~~L~~ 249 (392)
+|++|++++|.++.+|+.+..+++|++|++++|.++.+ |..+..+++|++|++++|.+. .++.. +.. .++|+.
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----l~~L~~ 354 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN----LENLRE 354 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT----CTTCCE
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc----cCcCCE
Confidence 66666666666666655555666666666666665544 234555555555555555544 33332 111 135555
Q ss_pred EEccCCCCCCC---CccccCCCCCCEEeCcCCCCccc
Q psy3966 250 LLLHNNKLRTL---PTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 250 L~l~~n~l~~l---~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
|++++|.++.+ +..+..+++|++|++++|.+.+.
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 55555555533 33455555555555555555443
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.1e-28 Score=227.65 Aligned_cols=241 Identities=25% Similarity=0.234 Sum_probs=200.5
Q ss_pred cccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC--CCCcccc-------CCCCCCEEEccCC
Q psy3966 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS--FFPDNAS-------KFTNLRSLDLSNN 89 (392)
Q Consensus 19 ~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~--~i~~~l~-------~l~~L~~L~Ls~n 89 (392)
...++|++|++++|.+ .++..+.. .|++|+|++|.++ .++..+. ++++|++|++++|
T Consensus 40 ~~~~~L~~l~l~~n~l---~~p~~~~~-----------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE---ADLGQFTD-----------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEEECTTHHHHCCTT---CCCHHHHH-----------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred ccCCCceeEeeccccc---ccHHHHHH-----------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 3567899999999998 33443432 3889999999986 4666555 7899999999999
Q ss_pred cCC-cCCccc--c-CccchhhhhhcCCCCCCCCCccCCCC-----CCCcEEeccCCCCcccC-ccccCCcCCcEEECCCC
Q psy3966 90 RIT-HLPQAI--T-NFPLSTLIARNNLLTAESLPKDMSNL-----KNLKVFNLSGNQLEQFP-IQILDIPTLKYLYLGNN 159 (392)
Q Consensus 90 ~l~-~l~~~~--~-~~~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n 159 (392)
+++ .+|..+ . +.+|++|++++|.++. . |..+..+ ++|++|++++|+++.++ ..+..+++|++|++++|
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVSWAT-R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCBCSS-S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC
T ss_pred cccchhHHHHHHhcCCCccEEEccCCCCcc-h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC
Confidence 998 677765 4 8899999999999986 3 6766666 89999999999999776 67788999999999999
Q ss_pred CCCc---Cchhh--cCCCCccEEEccCCCCcccc----hhhcCCcCCCEEEccCCCCCCcc--hhhhCCcccceeeccCC
Q psy3966 160 SLNH---VPREI--NKLCKLHVLSLGGNSLTDIP----DTFGDLYQLEALILSDNQLESLP--ASISNLKMLKSLLLHNN 228 (392)
Q Consensus 160 ~l~~---l~~~l--~~~~~L~~L~l~~n~l~~l~----~~l~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~L~~n 228 (392)
.+.. ++..+ ..+++|++|++++|.++.++ ..+..+++|++|++++|+++..+ ..+..+++|++|++++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 9763 34454 78999999999999999543 23467899999999999999654 35677899999999999
Q ss_pred cCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
.++.+|..+. ++|+.|++++|+++.+|. +..+++|++|++++|++++
T Consensus 264 ~l~~ip~~~~------~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 264 GLKQVPKGLP------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCSSCC------SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred ccChhhhhcc------CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 9999987654 389999999999999977 8889999999999999975
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=7e-26 Score=220.57 Aligned_cols=245 Identities=27% Similarity=0.357 Sum_probs=152.6
Q ss_pred CCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcC
Q psy3966 15 DSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHL 94 (392)
Q Consensus 15 ~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l 94 (392)
.+++..+++|++|||++|.+++.. . + ..+++|++|++++|.++.++. +.++++|++|++++|.++.+
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~--~-~---------~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 127 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDIT--P-L---------KNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI 127 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCG--G-G---------TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CcchhhhcCCCEEECCCCccCCch--h-h---------hccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCC
Confidence 345677889999999999887632 1 2 345678888888887777665 77777888888888777777
Q ss_pred CccccCccchhhhhhcCCCCCCC------------------CCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEEC
Q psy3966 95 PQAITNFPLSTLIARNNLLTAES------------------LPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYL 156 (392)
Q Consensus 95 ~~~~~~~~L~~L~l~~n~~~~~~------------------~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 156 (392)
+....+.+|++|++++|.+.... ....+.++++|++|++++|.++.++ .+..+++|++|++
T Consensus 128 ~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l 206 (466)
T 1o6v_A 128 DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIA 206 (466)
T ss_dssp GGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred hHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEe
Confidence 65333777777777777655310 0012456667777777777766554 3556667777777
Q ss_pred CCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChh
Q psy3966 157 GNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTE 236 (392)
Q Consensus 157 ~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~ 236 (392)
++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++.
T Consensus 207 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 207 TNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-
T ss_pred cCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-
Confidence 7776665533 555666666666666666553 35556666666666666665543 5556666666666666655543
Q ss_pred hHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 237 IITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
+.. .++|+.|++++|.++.++. +..+++|++|++++|++++
T Consensus 283 ~~~----l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 283 LAG----LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp GTT----CTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred ccC----CCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence 222 2355666666665555543 4455555566666555554
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.6e-26 Score=223.56 Aligned_cols=238 Identities=22% Similarity=0.328 Sum_probs=123.9
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcc
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQA 97 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~ 97 (392)
+.++++|++|++++|.+.+... + ..+++|++|++++|.++.++. +.++++|++|++++|.++.++..
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~---~---------~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 152 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP---L---------ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISAL 152 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---G---------TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGG
T ss_pred hhccccCCEEECCCCccccChh---h---------cCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhh
Confidence 5667777777777777765321 2 245667777777776666544 56666666666666665543321
Q ss_pred --------------------cc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEEC
Q psy3966 98 --------------------IT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYL 156 (392)
Q Consensus 98 --------------------~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 156 (392)
+. +.+|++|++++|.+.. + ..+..+++|++|++++|.++.++. +..+++|++|++
T Consensus 153 ~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 228 (466)
T 1o6v_A 153 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--I-SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSL 228 (466)
T ss_dssp TTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred ccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC--C-hhhccCCCCCEEEecCCccccccc-ccccCCCCEEEC
Confidence 11 4556666666666543 1 235556666666666666554433 344555555555
Q ss_pred CCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChh
Q psy3966 157 GNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTE 236 (392)
Q Consensus 157 ~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~ 236 (392)
++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.+++++.
T Consensus 229 ~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~- 304 (466)
T 1o6v_A 229 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP- 304 (466)
T ss_dssp CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-
T ss_pred CCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-
Confidence 555555442 34455555555555555554433 4445555555555555554433 4444455555555554444333
Q ss_pred hHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCc
Q psy3966 237 IITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
+.. .++|+.|++++|.++.++. +..+++|++|++++|+++
T Consensus 305 ~~~----l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 305 ISN----LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GGG----CTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCC
T ss_pred hcC----CCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccC
Confidence 111 1244444444444443332 333444444444444443
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.5e-26 Score=221.05 Aligned_cols=243 Identities=27% Similarity=0.388 Sum_probs=204.2
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCCcc-cc-
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQA-IT- 99 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~~~-~~- 99 (392)
..+.++.++..++. ++. ..++++++|+|++|+++.+ +..|.++++|++|+|++|.++.++.. +.
T Consensus 55 ~~~~v~c~~~~l~~--iP~-----------~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 121 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE--VPQ-----------GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121 (452)
T ss_dssp SSCEEECCSSCCSS--CCS-----------CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCcEEEECCCCcCc--cCC-----------CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence 45789999888764 221 1246899999999999965 56789999999999999999977644 44
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc-cccCCcCCcEEECCC-CCCCcCch-hhcCCCCccE
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI-QILDIPTLKYLYLGN-NSLNHVPR-EINKLCKLHV 176 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~-n~l~~l~~-~l~~~~~L~~ 176 (392)
+.+|++|++++|.++. ..+..+..+++|++|++++|.++.++. .+..+++|++|++++ +.+..++. .+..+++|++
T Consensus 122 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 122 LASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp CTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred cccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 8999999999999985 455668999999999999999998876 456799999999999 56777765 5889999999
Q ss_pred EEccCCCCcccchhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCC
Q psy3966 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255 (392)
Q Consensus 177 L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 255 (392)
|++++|.++.+|. +..+++|++|++++|.++.+ |..+..+++|+.|++++|.++.++...+. ..++|+.|++++|
T Consensus 201 L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~N 276 (452)
T 3zyi_A 201 LNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD---GLASLVELNLAHN 276 (452)
T ss_dssp EECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT---TCTTCCEEECCSS
T ss_pred EECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc---CCCCCCEEECCCC
Confidence 9999999999864 78999999999999999976 56799999999999999999977554322 2358999999999
Q ss_pred CCCCCCcc-ccCCCCCCEEeCcCCCCccc
Q psy3966 256 KLRTLPTE-IITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 256 ~l~~l~~~-l~~l~~L~~L~l~~N~l~~~ 283 (392)
+++.+|.. +..+++|+.|++++|++...
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCCccChHHhccccCCCEEEccCCCcCCC
Confidence 99988765 56699999999999998754
No 37
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.8e-27 Score=220.11 Aligned_cols=256 Identities=22% Similarity=0.216 Sum_probs=204.1
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCccccC
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAITN 100 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~~~ 100 (392)
.+++.++++.+.+.. ....+. ..+++|++|+|++|+++.++ ..+..+++|++|++++|.++.+++...+
T Consensus 10 ~~l~i~~ls~~~l~~--~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l 79 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQ--ALASLR--------QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESL 79 (317)
T ss_dssp TEEEEESCCTTTHHH--HHHHHH--------TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTC
T ss_pred CceeEeeccccchhh--hHHHHh--------ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhc
Confidence 346677777777532 122221 23578999999999999765 5789999999999999999877663338
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCch-hhcCCCCccEEEc
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSL 179 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l 179 (392)
.+|++|++++|.++. ++ ..++|++|++++|.++.++.. .+++|++|++++|.++.++. .+..+++|++|++
T Consensus 80 ~~L~~L~Ls~n~l~~--l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 80 STLRTLDLNNNYVQE--LL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp TTCCEEECCSSEEEE--EE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred CCCCEEECcCCcccc--cc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 999999999999874 22 348999999999999977643 37889999999999998754 6788999999999
Q ss_pred cCCCCccc-chhh-cCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCC
Q psy3966 180 GGNSLTDI-PDTF-GDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKL 257 (392)
Q Consensus 180 ~~n~l~~l-~~~l-~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 257 (392)
++|.++.+ +..+ ..+++|++|++++|.++.++.. ..+++|++|++++|.++.++..+..+ ++|+.|++++|.+
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l----~~L~~L~L~~N~l 226 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNNKL 226 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGG----TTCSEEECTTSCC
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhccc----CcccEEECcCCcc
Confidence 99999976 3444 4789999999999999987543 35899999999999999998876555 4999999999999
Q ss_pred CCCCccccCCCCCCEEeCcCCCCccccccCccCCCCCHHHHHH
Q psy3966 258 RTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELAS 300 (392)
Q Consensus 258 ~~l~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~L~~ 300 (392)
+.+|..+..+++|+.|++++|++............+.+..+..
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 9999999999999999999999984333333333444555543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-26 Score=229.98 Aligned_cols=244 Identities=21% Similarity=0.232 Sum_probs=195.3
Q ss_pred cccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCcc
Q psy3966 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQA 97 (392)
Q Consensus 19 ~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~~ 97 (392)
..+.+++.|++++|.++.. +..+. ..+++|++|+|++|.++.++. .++.+++|++|+|++|.++.+++.
T Consensus 48 l~l~~l~~l~l~~~~l~~l--p~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKL--PAALL--------DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GGGCCCSEEEESSCEESEE--CTHHH--------HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCCceEEEeeCCCCCCc--CHHHH--------ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 3567899999999987652 22211 235799999999999997654 789999999999999999988776
Q ss_pred c-c-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc-cccCCcCCcEEECCCCCCCcCchhhcCCCCc
Q psy3966 98 I-T-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLNHVPREINKLCKL 174 (392)
Q Consensus 98 ~-~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L 174 (392)
. . +++|++|++++|.++. ..+..+.++++|++|++++|.++.+++ .+..+++|++|++++|.++.++ +..+++|
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L 194 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSL 194 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTC
T ss_pred HHcCCCCCCEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhh
Confidence 5 4 8999999999999984 334456899999999999999997755 5778999999999999998764 3344555
Q ss_pred cEEEccCC-------------------CCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCC-C
Q psy3966 175 HVLSLGGN-------------------SLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-P 234 (392)
Q Consensus 175 ~~L~l~~n-------------------~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~-~ 234 (392)
++|++++| .+..++.. ..++|+.|++++|.++.. ..+..+++|+.|++++|.++++ |
T Consensus 195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES
T ss_pred hhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCH
Confidence 55555554 44444332 235789999999988875 5688999999999999999966 4
Q ss_pred hhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 235 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
..+..+ ++|+.|++++|.++.+|..+..+++|+.|++++|.++.
T Consensus 272 ~~~~~l----~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~ 315 (597)
T 3oja_B 272 HPFVKM----QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 315 (597)
T ss_dssp GGGTTC----SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred HHhcCc----cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc
Confidence 445444 48999999999999999888889999999999999973
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.3e-26 Score=231.00 Aligned_cols=252 Identities=20% Similarity=0.192 Sum_probs=165.2
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCCccccC
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLPQAITN 100 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~ 100 (392)
++|++|||++|.+++.. +..+ ..+++|++|+|++|+++.+ |..|.++++|++|++++|+++.+|.. .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDI---------SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PM 120 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGT---------TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CC
T ss_pred CCcCEEECCCCCccccC-hhhh---------ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-cc
Confidence 67888888888876521 1111 3567888888888888855 55678888888888888888887776 77
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCC--cEEECCCCCC--C-cCchhhcCC----
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTL--KYLYLGNNSL--N-HVPREINKL---- 171 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L--~~L~l~~n~l--~-~l~~~l~~~---- 171 (392)
.+|++|++++|.++....|..+.++++|++|++++|.++.. .+..+++| ++|++++|.+ + ..|..+..+
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 88888888888887545567788888888888888877642 23333444 6666666655 2 111111111
Q ss_pred -----------------------------------------------------------------------------CCc
Q psy3966 172 -----------------------------------------------------------------------------CKL 174 (392)
Q Consensus 172 -----------------------------------------------------------------------------~~L 174 (392)
++|
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 144
Q ss_pred cEEEccCCCCc-ccchhh-----------------------------------------------------cCCcCCCEE
Q psy3966 175 HVLSLGGNSLT-DIPDTF-----------------------------------------------------GDLYQLEAL 200 (392)
Q Consensus 175 ~~L~l~~n~l~-~l~~~l-----------------------------------------------------~~l~~L~~L 200 (392)
++|++++|.+. .+|..+ ..+++|++|
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L 358 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence 45555555444 333322 556778888
Q ss_pred EccCCCCCC-cchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCC-CCcc-ccCCCCCCEEeCcC
Q psy3966 201 ILSDNQLES-LPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRT-LPTE-IITLKCLSELSLRD 277 (392)
Q Consensus 201 ~L~~n~l~~-l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~-l~~l~~L~~L~l~~ 277 (392)
++++|+++. +|..+..+++|+.|++++|++++++.....+. ..++|+.|++++|.++. +|.. +..+++|++|++++
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 888888774 56677778888888888888876654322221 22478888888888875 7654 55577788888888
Q ss_pred CCCccccccC
Q psy3966 278 NPLVIRFVSD 287 (392)
Q Consensus 278 N~l~~~~~~~ 287 (392)
|.+++..+..
T Consensus 438 n~l~~~~~~~ 447 (562)
T 3a79_B 438 NMLTGSVFRC 447 (562)
T ss_dssp SCCCGGGGSS
T ss_pred CCCCcchhhh
Confidence 8777655443
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=5.5e-27 Score=235.75 Aligned_cols=222 Identities=20% Similarity=0.182 Sum_probs=130.4
Q ss_pred CCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEec
Q psy3966 54 KPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133 (392)
Q Consensus 54 ~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 133 (392)
.+++|++|++++|.++.+| .+..+++|++|++++|.++.+|.. .+++|++|++++|.... +..+..+++|++|++
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~---~~~~~~l~~L~~L~l 357 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDL 357 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCE---ECCCCCCTTCCEEEC
T ss_pred cCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCcc---chhhccCCCCCEEEC
Confidence 4567888888888887777 677778888888888888777744 66667777777764332 114455666666666
Q ss_pred cCCCCccc---CccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccc--hhhcCCcCCCEEEccCCCCC
Q psy3966 134 SGNQLEQF---PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEALILSDNQLE 208 (392)
Q Consensus 134 ~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~l~ 208 (392)
++|.++.+ +..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 66666533 44455566666666666665555555555566666666666555442 24555555666666555555
Q ss_pred C-cchhhhCCcccceeeccCCcCCC--CChhhHhhhcccccCcEEEccCCCCCCC-CccccCCCCCCEEeCcCCCCcccc
Q psy3966 209 S-LPASISNLKMLKSLLLHNNKLRT--LPTEIITLKCLSEKLKSLLLHNNKLRTL-PTEIITLKCLSELSLRDNPLVIRF 284 (392)
Q Consensus 209 ~-l~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~~ 284 (392)
. .|..+..+++|++|++++|.+++ +|..+..+ ++|+.|++++|.++.+ |..+..+++|++|++++|++++..
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT----TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC----CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 2 33445555555555555555543 33333322 2555555555555533 334455555555555555555443
No 41
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.2e-25 Score=222.77 Aligned_cols=222 Identities=34% Similarity=0.411 Sum_probs=126.5
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~ 101 (392)
++|++|+|++|.++. ++ ..+++|++|+|++|+++.+|. .+++|++|++++|.++.+|. ...
T Consensus 61 ~~L~~L~L~~N~l~~--lp------------~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~ 121 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--LP------------ALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPS 121 (622)
T ss_dssp TTCSEEEECSCCCSC--CC------------CCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCT
T ss_pred CCCcEEEecCCCCCC--CC------------CcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCC
Confidence 567777777777653 11 124677777777777777665 55677777777777776665 455
Q ss_pred cchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccC
Q psy3966 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGG 181 (392)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~ 181 (392)
+|++|++++|.++. +|.. +++|++|++++|.++.+|.. .++|+.|++++|.++.+| ..+++|+.|++++
T Consensus 122 ~L~~L~L~~N~l~~--lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 122 GLCKLWIFGNQLTS--LPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP---MLPSGLQELSVSD 190 (622)
T ss_dssp TCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred CcCEEECCCCCCCc--CCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc---ccCCCCcEEECCC
Confidence 66677777776653 4432 36677777777776665532 234455555555555444 2334555555555
Q ss_pred CCCcccchhhc-----------------CCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhccc
Q psy3966 182 NSLTDIPDTFG-----------------DLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLS 244 (392)
Q Consensus 182 n~l~~l~~~l~-----------------~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 244 (392)
|.++.+|..+. .+++|++|++++|.++.+| ..+++|+.|++++|.++.+|. .+
T Consensus 191 N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-------~~ 260 (622)
T 3g06_A 191 NQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-------LP 260 (622)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-------CC
T ss_pred CCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-------cc
Confidence 55554443210 1244555555555555554 233555555555555555554 11
Q ss_pred ccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccc
Q psy3966 245 EKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 245 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
++|+.|++++|.|+.+|..+..+++|+.|++++|++++.
T Consensus 261 ~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred ccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 356666666666666655555566666666666665543
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.8e-25 Score=216.69 Aligned_cols=209 Identities=24% Similarity=0.255 Sum_probs=113.8
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcc
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQA 97 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~ 97 (392)
+.++++|++||+++|.+++. + .+ ..+++|++|++++|+++.++ ++.+++|++|++++|.++.++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~--~-~l---------~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM--T-GI---------EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC--T-TG---------GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred hhHcCCCCEEEccCCCcccC--h-hh---------cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--
Confidence 44566677777777766542 1 12 23456666666666666653 566666666666666666554
Q ss_pred cc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCC-CCCcCchhhcCCCCcc
Q psy3966 98 IT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNN-SLNHVPREINKLCKLH 175 (392)
Q Consensus 98 ~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n-~l~~l~~~l~~~~~L~ 175 (392)
+. +.+|++|++++|.++. ++ +..+++|++|++++|+++.++ +..+++|++|++++| .+..+ .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 33 5666666666666653 22 556666666666666666543 444555555555555 23333 244455555
Q ss_pred EEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCC
Q psy3966 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255 (392)
Q Consensus 176 ~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 255 (392)
+|++++|.++.+| ++.+++|++|++++|.++.++ +..+++|+.|++++|+++++| +..+ ++|+.|++++|
T Consensus 174 ~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l----~~L~~L~l~~N 243 (457)
T 3bz5_A 174 TLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPL----TQLTYFDCSVN 243 (457)
T ss_dssp EEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC----TTCSEEECCSS
T ss_pred EEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--cccc----CCCCEEEeeCC
Confidence 5555555555544 445555555555555555442 444555555555555555544 1111 24555555555
Q ss_pred CCCCC
Q psy3966 256 KLRTL 260 (392)
Q Consensus 256 ~l~~l 260 (392)
.++.+
T Consensus 244 ~l~~~ 248 (457)
T 3bz5_A 244 PLTEL 248 (457)
T ss_dssp CCSCC
T ss_pred cCCCc
Confidence 55443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.7e-25 Score=213.78 Aligned_cols=189 Identities=21% Similarity=0.240 Sum_probs=116.6
Q ss_pred CCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCC
Q psy3966 16 SDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP 95 (392)
Q Consensus 16 ~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~ 95 (392)
+++..+++|++||+++|.+++.. .+.+++|++|++++|+++.++ ++++++|++|++++|+++.++
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~~-------------~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~ 122 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTLD-------------LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD 122 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCCC-------------CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC
T ss_pred hhhcccCCCCEEEccCCcCCeEc-------------cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec
Confidence 36778899999999999987631 134678888888888888764 777888888888888888775
Q ss_pred cccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC-CCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCC
Q psy3966 96 QAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN-QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173 (392)
Q Consensus 96 ~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~ 173 (392)
+. +.+|++|++++|.++. + .+..+++|++|++++| .+..+ .+..+++|++|++++|.++.+| +..+++
T Consensus 123 --~~~l~~L~~L~l~~N~l~~--l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~ 192 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTE--I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKL 192 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSC--C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTT
T ss_pred --CCCCCcCCEEECCCCccce--e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCC
Confidence 33 7778888888887764 2 2555566666666665 23333 2344555555555555555543 444555
Q ss_pred ccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCC
Q psy3966 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233 (392)
Q Consensus 174 L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~ 233 (392)
|++|++++|.++.++ ++.+++|++|++++|+++.+| +..+++|+.|++++|+++++
T Consensus 193 L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 193 LNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc
Confidence 555555555555442 444555555555555555444 44444555555555544433
No 44
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9e-26 Score=205.48 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=163.5
Q ss_pred cEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCccccCccc
Q psy3966 25 KTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAITNFPL 103 (392)
Q Consensus 25 ~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L 103 (392)
+++|++++.++.. +. ..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++
T Consensus 14 ~~~~c~~~~l~~i--p~-----------~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-------- 72 (285)
T 1ozn_A 14 VTTSCPQQGLQAV--PV-----------GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-------- 72 (285)
T ss_dssp CEEECCSSCCSSC--CT-----------TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------
T ss_pred eEEEcCcCCcccC--Cc-----------CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC--------
Confidence 6777777776541 11 12457888888888887655 34677788888888888776542
Q ss_pred hhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCC-Cccc-CccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEcc
Q psy3966 104 STLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ-LEQF-PIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLG 180 (392)
Q Consensus 104 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l-~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~ 180 (392)
+..+..+++|++|++++|. ++.+ +..+..+++|++|++++|.++.+ +..+..+++|++|+++
T Consensus 73 ---------------~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 73 ---------------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp ---------------TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ---------------HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 3456677888888888886 7766 45566788888888888888866 4557778888888888
Q ss_pred CCCCcccch-hhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCC-ChhhHhhhcccccCcEEEccCCCC
Q psy3966 181 GNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTL-PTEIITLKCLSEKLKSLLLHNNKL 257 (392)
Q Consensus 181 ~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~L~~L~l~~n~l 257 (392)
+|.++.++. .++.+++|++|++++|+++.++. .+..+++|+.|++++|.++++ |..+..+ ++|+.|++++|.+
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----~~L~~L~l~~n~l 213 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL----GRLMTLYLFANNL 213 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC----TTCCEEECCSSCC
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCc----ccccEeeCCCCcC
Confidence 888887754 47788888888888888887765 477888888888888888865 4444333 4888999999988
Q ss_pred CCCCc-cccCCCCCCEEeCcCCCCccc
Q psy3966 258 RTLPT-EIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 258 ~~l~~-~l~~l~~L~~L~l~~N~l~~~ 283 (392)
+.++. .+..+++|++|++++|++...
T Consensus 214 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 214 SALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp SCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CcCCHHHcccCcccCEEeccCCCccCC
Confidence 87775 477789999999999988754
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=5.3e-26 Score=225.85 Aligned_cols=103 Identities=27% Similarity=0.332 Sum_probs=46.9
Q ss_pred CCCCccEEEccCCCCcccc---hhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhccccc
Q psy3966 170 KLCKLHVLSLGGNSLTDIP---DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEK 246 (392)
Q Consensus 170 ~~~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 246 (392)
.+++|++|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|++|++++|.++.++..+. ++
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~------~~ 432 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QT 432 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC------TT
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc------CC
Confidence 3344444444444444332 12444445555555555555444444444455555555555444332211 13
Q ss_pred CcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCc
Q psy3966 247 LKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 247 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
|+.|++++|+++.++ ..+++|++|++++|+++
T Consensus 433 L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 433 LEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK 464 (549)
T ss_dssp CSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred ceEEECCCCChhhhc---ccCChhcEEECCCCccC
Confidence 333333333333222 24556666666666665
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=9e-27 Score=214.27 Aligned_cols=234 Identities=21% Similarity=0.259 Sum_probs=199.3
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc--CccchhhhhhcCCCCCC-CCCccCCCCCCCcEEecc
Q psy3966 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT--NFPLSTLIARNNLLTAE-SLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 58 L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~--~~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~ 134 (392)
-+.++.+++.++.+|..+. ++|++|++++|.++.+|.... +.+|++|++++|.++.. ..+..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3579999999999988654 799999999999999998653 89999999999998731 124566678999999999
Q ss_pred CCCCcccCccccCCcCCcEEECCCCCCCcCch--hhcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCC--
Q psy3966 135 GNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR--EINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLES-- 209 (392)
Q Consensus 135 ~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~-- 209 (392)
+|.++.++..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99999999888899999999999999998764 688999999999999999965 5678899999999999999985
Q ss_pred cchhhhCCcccceeeccCCcCCCCCh-hhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCccccccC
Q psy3966 210 LPASISNLKMLKSLLLHNNKLRTLPT-EIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLVIRFVSD 287 (392)
Q Consensus 210 l~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~~~~~ 287 (392)
+|..+..+++|++|++++|.++++++ .+..+ ++|+.|++++|.++.++. .+..+++|++|++++|++++..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL----SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTC----TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCC----CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 77889999999999999999997744 34333 489999999999998765 6778999999999999999877766
Q ss_pred ccCCCCCHHH
Q psy3966 288 MTYKPPSLLE 297 (392)
Q Consensus 288 ~~~~~~~l~~ 297 (392)
+...++.+..
T Consensus 243 ~~~~~~~L~~ 252 (306)
T 2z66_A 243 LQHFPSSLAF 252 (306)
T ss_dssp CCCCCTTCCE
T ss_pred HHhhhccCCE
Confidence 6555444443
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4e-26 Score=226.77 Aligned_cols=88 Identities=24% Similarity=0.245 Sum_probs=48.1
Q ss_pred CCcCCCEEEccCCCCCC-cch---hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCC
Q psy3966 193 DLYQLEALILSDNQLES-LPA---SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLK 268 (392)
Q Consensus 193 ~l~~L~~L~L~~n~l~~-l~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~ 268 (392)
.+++|++|++++|+++. +|. .+..+++|++|++++|++++++..-..+ ...++|++|++++|+++.+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL-LTLKNLTSLDISRNTFHPMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG-GGCTTCCEEECTTCCCCCCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh-hcCCCCCEEECCCCCCccCChhhcccc
Confidence 35555555555555552 221 2445556666666666655543210001 122366677777776666666666666
Q ss_pred CCCEEeCcCCCCc
Q psy3966 269 CLSELSLRDNPLV 281 (392)
Q Consensus 269 ~L~~L~l~~N~l~ 281 (392)
+|++|++++|.++
T Consensus 411 ~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 411 KMRFLNLSSTGIR 423 (549)
T ss_dssp TCCEEECTTSCCS
T ss_pred cccEEECCCCCcc
Confidence 6666666666654
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2e-25 Score=227.38 Aligned_cols=253 Identities=24% Similarity=0.265 Sum_probs=126.8
Q ss_pred CccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC--CCCc-ccc--CCCCCCEEEccCCcC
Q psy3966 17 DSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS--FFPD-NAS--KFTNLRSLDLSNNRI 91 (392)
Q Consensus 17 ~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~--~i~~-~l~--~l~~L~~L~Ls~n~l 91 (392)
.+..+++|++|++++|.+.+.. +. .+..+++|++|++++|.++ .++. .+. ..++|++|++++|++
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~-~~---------~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIK-SN---------MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCC-TT---------TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred hcccCCCCCEEECCCCccCCCC-hh---------HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 4567788888888888876521 11 1123456666666666532 2221 111 123555555555555
Q ss_pred CcCCc-ccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccC-ccccCCcCCcEEECCCCCCC---cCc
Q psy3966 92 THLPQ-AIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFP-IQILDIPTLKYLYLGNNSLN---HVP 165 (392)
Q Consensus 92 ~~l~~-~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~---~l~ 165 (392)
+.+++ .+. +.+|++|++++|.+.+...+..+..+++|++|++++|++..++ ..+..+++|++|++++|.+. .+|
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 54332 222 5555555555555543222244555555555555555555332 23334555555555555443 334
Q ss_pred hhhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcch---------hhhCCcccceeeccCCcCCCCCh
Q psy3966 166 REINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA---------SISNLKMLKSLLLHNNKLRTLPT 235 (392)
Q Consensus 166 ~~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~---------~l~~l~~L~~L~L~~n~l~~~~~ 235 (392)
..+..+++|++|++++|.++.+++ .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.+|.
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 445555555555555555554432 34555555555555555543311 14445555555555555555544
Q ss_pred hhHhhhcccccCcEEEccCCCCCCCCccc-cCCCCCCEEeCcCCCCcc
Q psy3966 236 EIITLKCLSEKLKSLLLHNNKLRTLPTEI-ITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 236 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~l-~~l~~L~~L~l~~N~l~~ 282 (392)
..+. ..++|+.|++++|+++.+|... ..+++|+.|++++|++++
T Consensus 554 ~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 554 EVFK---DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TTTT---TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred HHcc---cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 3211 1125555555555555554432 345555555555555543
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=8e-26 Score=205.81 Aligned_cols=200 Identities=25% Similarity=0.312 Sum_probs=131.0
Q ss_pred cccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCc-CCcCCc-c
Q psy3966 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNR-ITHLPQ-A 97 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~-l~~l~~-~ 97 (392)
.++|++|++++|.+++... . .+..+++|++|++++|.++.+ +..+..+++|++|++++|. ++.++. .
T Consensus 31 ~~~l~~L~l~~n~i~~~~~-~---------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA-A---------SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CTTCSEEECTTSCCCEECT-T---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CCCceEEEeeCCcCCccCH-H---------HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 4689999999999876221 1 124578999999999999966 6778999999999999997 887643 3
Q ss_pred cc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCCCCCCcCch-hhcCCCCc
Q psy3966 98 IT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPR-EINKLCKL 174 (392)
Q Consensus 98 ~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L 174 (392)
+. +.+|++|++++|.++. ..+..+.++++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|
T Consensus 101 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 33 5566666666666653 3345555666666666666666655433 4446666666666666665544 25556666
Q ss_pred cEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCC
Q psy3966 175 HVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 175 ~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~ 231 (392)
++|++++|.++.+ |..+..+++|++|++++|.++.++. .+..+++|+.|++++|++.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 6666666666644 4455566666666666666665553 3555666666666666554
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=8.8e-25 Score=211.67 Aligned_cols=229 Identities=26% Similarity=0.334 Sum_probs=128.1
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~ 101 (392)
++|++|++++|.+++ ++ .+ +.+++|++|++++|+++.+|..+ ++|++|++++|+++.+|....+.
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~---------~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-EL---------QNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CC---------TTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCT
T ss_pred CCCCEEECcCCCCCC--Cc-cc---------CCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCC
Confidence 466677777666653 21 11 23455666666666555554432 35555555555555555322255
Q ss_pred cchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhh-------------
Q psy3966 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI------------- 168 (392)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l------------- 168 (392)
+|++|++++|.+++ +|... ++|++|++++|.++.+| .+..+++|++|++++|.++.+|...
T Consensus 196 ~L~~L~l~~N~l~~--l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 196 FLTAIYADNNSLKK--LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 269 (454)
T ss_dssp TCCEEECCSSCCSS--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCc--CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcc
Confidence 55555555555542 22211 34555555555555444 2444555555555555554443311
Q ss_pred ----cCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhccc
Q psy3966 169 ----NKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLS 244 (392)
Q Consensus 169 ----~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 244 (392)
...++|++|++++|.++.+|.. .++|++|++++|.++.++. ..++|+.|++++|+++++|.. .
T Consensus 270 ~~l~~~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~-------~ 336 (454)
T 1jl5_A 270 TDLPELPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL-------P 336 (454)
T ss_dssp SCCCCCCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC-------C
T ss_pred cccCcccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccC---CcCcCCEEECCCCcccccccc-------C
Confidence 0113445555555554443321 1355555555555554432 114788888888888877654 2
Q ss_pred ccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc--ccccC
Q psy3966 245 EKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI--RFVSD 287 (392)
Q Consensus 245 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~--~~~~~ 287 (392)
++|+.|++++|.++.+|. .+++|++|++++|++++ .++..
T Consensus 337 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred CcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHH
Confidence 489999999999998887 46889999999999987 44443
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.5e-25 Score=202.96 Aligned_cols=201 Identities=28% Similarity=0.371 Sum_probs=167.9
Q ss_pred CCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEec
Q psy3966 54 KPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133 (392)
Q Consensus 54 ~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 133 (392)
.++++++++++++.++.+|..+. +++++|++++|.++.+ .+..+..+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~~L~L 62 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTF-----------------------SLATLMPYTRLTQLNL 62 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEE-----------------------EGGGGTTCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCcc-----------------------CHHHhhcCCCCCEEEC
Confidence 34566777777777766665543 5666777777666543 2456788899999999
Q ss_pred cCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCCCCcch
Q psy3966 134 SGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA 212 (392)
Q Consensus 134 ~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~ 212 (392)
++|.++.++.. ..+++|++|++++|.++.+|..+..+++|++|++++|+++.++ ..|..+++|++|++++|+++.+|.
T Consensus 63 ~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 63 DRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp TTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred CCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 99999987754 6789999999999999999988999999999999999999886 578999999999999999998876
Q ss_pred -hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccc
Q psy3966 213 -SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 213 -~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
.+..+++|+.|++++|+++.+|...+. ..++|+.|++++|+++.+|..+....+|+.|++++|++...
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~---~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGLLN---GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTTTT---TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred hhcccccCCCEEECCCCcCCccCHHHhc---CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 468899999999999999999886543 22489999999999999999999999999999999998754
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3e-27 Score=218.67 Aligned_cols=236 Identities=23% Similarity=0.218 Sum_probs=199.7
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT 99 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~ 99 (392)
.+++|++|||++|.+++.. +..+ ..+++|++|+|++|.++.+++ +..+++|++|++++|.++.++.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~-~~~~---------~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~--- 97 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQIS-AADL---------APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (317)
T ss_dssp TGGGCSEEECTTSCCCCCC-HHHH---------TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE---
T ss_pred cCCCCCEEECcCCccCcCC-HHHh---------hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC---
Confidence 4568999999999998632 2233 346899999999999997655 8999999999999999987664
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc-cccCCcCCcEEECCCCCCCcC-chhh-cCCCCccE
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLNHV-PREI-NKLCKLHV 176 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l-~~~l-~~~~~L~~ 176 (392)
.++|++|++++|.++. ++ ...+++|++|++++|+++.++. .+..+++|++|++++|.++.+ +..+ ..+++|++
T Consensus 98 ~~~L~~L~l~~n~l~~--~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 98 GPSIETLHAANNNISR--VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (317)
T ss_dssp CTTCCEEECCSSCCSE--EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCcCEEECCCCccCC--cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE
Confidence 4889999999999985 22 2346889999999999997754 566799999999999999975 3444 47899999
Q ss_pred EEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC
Q psy3966 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 177 L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 256 (392)
|++++|.++.++. ...+++|++|++++|+++.+|..+..+++|+.|++++|.++.+|..+..+ ++|+.|++++|.
T Consensus 174 L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l----~~L~~L~l~~N~ 248 (317)
T 3o53_A 174 LNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS----QNLEHFDLRGNG 248 (317)
T ss_dssp EECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC----TTCCEEECTTCC
T ss_pred EECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcC----CCCCEEEccCCC
Confidence 9999999998864 34589999999999999999888999999999999999999988765444 489999999999
Q ss_pred CC--CCCccccCCCCCCEEeCcCC
Q psy3966 257 LR--TLPTEIITLKCLSELSLRDN 278 (392)
Q Consensus 257 l~--~l~~~l~~l~~L~~L~l~~N 278 (392)
++ .+|..+..+++|+.++++++
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccCcCHHHHHhccccceEEECCCc
Confidence 98 77888889999999999844
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-25 Score=219.58 Aligned_cols=217 Identities=23% Similarity=0.224 Sum_probs=184.8
Q ss_pred CCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEe
Q psy3966 54 KPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132 (392)
Q Consensus 54 ~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 132 (392)
.+++|++|+|++|.++.++ ..+..+++|++|+|++|.++.+++...+++|++|++++|.++. ++ ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--LL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE--EE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC--CC----CCCCcCEEE
Confidence 4568999999999998664 5788999999999999999876663338899999999998874 23 238999999
Q ss_pred ccCCCCcccCccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEccCCCCccc-chhhc-CCcCCCEEEccCCCCCC
Q psy3966 133 LSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDI-PDTFG-DLYQLEALILSDNQLES 209 (392)
Q Consensus 133 l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~l-~~~l~-~l~~L~~L~L~~n~l~~ 209 (392)
+++|.++.++.. .+++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..+. .+++|++|++++|.++.
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 999999977653 468999999999999976 55788899999999999999964 55665 78999999999999998
Q ss_pred cchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccc
Q psy3966 210 LPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 210 l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
++. ...+++|+.|++++|.++++|+.+..+ ++|+.|++++|.++.+|..+..+++|+.|++++|++...
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l----~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCEECGGGGGG----TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred ccc-cccCCCCCEEECCCCCCCCCCHhHcCC----CCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 755 346899999999999999998876655 489999999999999999999999999999999999833
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.9e-25 Score=200.32 Aligned_cols=201 Identities=25% Similarity=0.350 Sum_probs=161.5
Q ss_pred CCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc
Q psy3966 56 ENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 134 (392)
++|++|++++|+++.++. .+.++++|++|++++|.++.++ +..+..+++|++|+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-----------------------DGAYQSLSHLSTLILT 84 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-----------------------TTTTTTCTTCCEEECT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-----------------------HHHccCCcCCCEEECC
Confidence 467777777777775544 5666777777777777666443 3457788899999999
Q ss_pred CCCCcccC-ccccCCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCcc--cchhhcCCcCCCEEEccCCCCCCc
Q psy3966 135 GNQLEQFP-IQILDIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTD--IPDTFGDLYQLEALILSDNQLESL 210 (392)
Q Consensus 135 ~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~L~~n~l~~l 210 (392)
+|.++.++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.++. +|..+..+++|++|++++|+++.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 99998765 456778999999999999887755 58889999999999999986 678899999999999999999976
Q ss_pred ch-hhhCCcccc----eeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCccc
Q psy3966 211 PA-SISNLKMLK----SLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 211 ~~-~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~ 283 (392)
+. .+..+++|+ .|++++|.++.++...+... +|+.|++++|.++.+|.. +..+++|++|++++|++.+.
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSC----CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCC----cccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 53 566666666 89999999998887665543 799999999999988876 46799999999999999864
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=6.8e-25 Score=223.47 Aligned_cols=266 Identities=20% Similarity=0.197 Sum_probs=202.6
Q ss_pred CCccccccccEEEeecCCCCchhhHhhhhccc------------------------CCcCCCCCCCccEEEccCCCCCCC
Q psy3966 16 SDSFKTVSIKTLDFSYSSLDSETLATQIELLP------------------------NNDYNKKPENIDTLLLYHNNLSFF 71 (392)
Q Consensus 16 ~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~------------------------~~~~~~~~~~L~~L~L~~n~l~~i 71 (392)
..+..+++|++|++++|.+.+... ..+..+. ....+..+++|++|++++|.++.+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred ccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 345678889999999998765321 1111100 001234567888888888888755
Q ss_pred C-ccccCCCCCCEEEccCCcCC--cCCcccc----CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc-ccC-
Q psy3966 72 P-DNASKFTNLRSLDLSNNRIT--HLPQAIT----NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFP- 142 (392)
Q Consensus 72 ~-~~l~~l~~L~~L~Ls~n~l~--~l~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~- 142 (392)
+ ..+.++++|++|++++|.++ .++...+ ...|+.|++++|.++. ..+..+..+++|++|++++|.++ .++
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe-EChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 3 44778888888888888743 4443322 3578888888888875 56778889999999999999987 455
Q ss_pred ccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEccCCCCc---ccchhhcCCcCCCEEEccCCCCCCcch-hhhCC
Q psy3966 143 IQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLT---DIPDTFGDLYQLEALILSDNQLESLPA-SISNL 217 (392)
Q Consensus 143 ~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~---~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l 217 (392)
..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+. .+|..+..+++|++|++++|+++.++. .+..+
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 4667799999999999998865 456888999999999999886 457889999999999999999998876 58899
Q ss_pred cccceeeccCCcCCCCChhhH-----hhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCccc
Q psy3966 218 KMLKSLLLHNNKLRTLPTEII-----TLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~ 283 (392)
++|+.|++++|.++.++.... ......++|+.|++++|.++.+|.. +..+++|++|++++|.++..
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence 999999999999986533210 0012335899999999999999874 77899999999999999843
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.8e-25 Score=220.57 Aligned_cols=248 Identities=21% Similarity=0.253 Sum_probs=148.5
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcc
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQA 97 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~ 97 (392)
+..+++|++|++++|.++. ++.. ...+ +|++|++++|.+..+|. ..+++|++|++++|.+......
T Consensus 278 ~~~l~~L~~L~l~~~~l~~--l~~~---------~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIER--VKDF---------SYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp TGGGTTCSEEEEESCEECS--CCBC---------CSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC
T ss_pred hcCcCcccEEEecCccchh--hhhh---------hccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc
Confidence 4455666666666665542 1111 1223 66666666666665554 3556666666666665533333
Q ss_pred ccCccchhhhhhcCCCCCCC-CCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCc--hhhcCCCCc
Q psy3966 98 ITNFPLSTLIARNNLLTAES-LPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP--REINKLCKL 174 (392)
Q Consensus 98 ~~~~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~~~~L 174 (392)
..+++|++|++++|.++... .+..+..+++|++|++++|.++.++..+..+++|++|++++|.+...+ ..+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 33666666666666665311 134555666677777777766666555566667777777776666442 245666667
Q ss_pred cEEEccCCCCcc-cchhhcCCcCCCEEEccCCCCC--CcchhhhCCcccceeeccCCcCCCC-ChhhHhhhcccccCcEE
Q psy3966 175 HVLSLGGNSLTD-IPDTFGDLYQLEALILSDNQLE--SLPASISNLKMLKSLLLHNNKLRTL-PTEIITLKCLSEKLKSL 250 (392)
Q Consensus 175 ~~L~l~~n~l~~-l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~L~~L 250 (392)
++|++++|.+.. .|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++++ |..+..+ ++|+.|
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----~~L~~L 499 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL----SSLQVL 499 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC----TTCCEE
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc----cCCCEE
Confidence 777777776664 3455666667777777777665 4566666667777777777766654 3333332 367777
Q ss_pred EccCCCCCCCCc-cccCCCCCCEEeCcCCCCccc
Q psy3966 251 LLHNNKLRTLPT-EIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 251 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~ 283 (392)
++++|.++.+|. .+..+++|++|++++|++++.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 777777665543 355666777777777766654
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=3.2e-24 Score=207.70 Aligned_cols=183 Identities=33% Similarity=0.511 Sum_probs=102.6
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccC
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 135 (392)
++|++|++++|.++.+|.. +++|++|++++|.++.++.. ..+|++|++++|.++. +| .+.++++|++|++++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCS
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCC
Confidence 4666666666666665542 25566666666666655432 1456666666666653 44 366666666666666
Q ss_pred CCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhh
Q psy3966 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASIS 215 (392)
Q Consensus 136 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~ 215 (392)
|+++.+|... ++|++|++++|.++.+| .+..+++|++|++++|.++.+|... ++|++|++++|.++.+|. +.
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~ 234 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQ 234 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CT
T ss_pred CcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cC
Confidence 6666555332 35666666666666654 4556666666666666665554321 355566666665555552 55
Q ss_pred CCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCC
Q psy3966 216 NLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP 261 (392)
Q Consensus 216 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 261 (392)
.+++|++|++++|+++++|... ++|+.|++++|.++.+|
T Consensus 235 ~l~~L~~L~l~~N~l~~l~~~~-------~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKTLPDLP-------PSLEALNVRDNYLTDLP 273 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCSCC-------TTCCEEECCSSCCSCCC
T ss_pred CCCCCCEEECCCCcCCcccccc-------cccCEEECCCCcccccC
Confidence 5555666666655555544311 24455555555544444
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=6.5e-26 Score=212.85 Aligned_cols=226 Identities=24% Similarity=0.338 Sum_probs=192.8
Q ss_pred CCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCc-ccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEe
Q psy3966 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132 (392)
Q Consensus 55 ~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~-~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 132 (392)
++.....+.+++.++.+|..+. ++|++|++++|.++.++. .+. +.+|++|++++|.++. ..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEE
Confidence 3455668999999999998765 599999999999998887 444 8999999999999985 5567899999999999
Q ss_pred ccCCCCcccCcc-ccCCcCCcEEECCCCCCCcCch--hhcCCCCccEEEccCC-CCccc-chhhcCCcCCCEEEccCCCC
Q psy3966 133 LSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPR--EINKLCKLHVLSLGGN-SLTDI-PDTFGDLYQLEALILSDNQL 207 (392)
Q Consensus 133 l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~n-~l~~l-~~~l~~l~~L~~L~L~~n~l 207 (392)
+++|+++.++.. +..+++|++|++++|.++.+|. .+..+++|++|++++| .++.+ +..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999999988876 6789999999999999999887 6889999999999999 57776 46789999999999999999
Q ss_pred CCc-chhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCC--------------------------
Q psy3966 208 ESL-PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL-------------------------- 260 (392)
Q Consensus 208 ~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l-------------------------- 260 (392)
+.+ |..+..+++|++|++++|.++.++...... .++|+.|++++|.++.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV---TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH---TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhh---cccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 965 678999999999999999998887665432 25899999999998753
Q ss_pred ------CccccCCCCCCEEeCcCCCCccccccC
Q psy3966 261 ------PTEIITLKCLSELSLRDNPLVIRFVSD 287 (392)
Q Consensus 261 ------~~~l~~l~~L~~L~l~~N~l~~~~~~~ 287 (392)
|..+..+++|++|++++|+++ .++..
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~ 295 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDG 295 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTT
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCC-ccCHH
Confidence 344667889999999999997 44444
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=7e-26 Score=208.96 Aligned_cols=226 Identities=21% Similarity=0.181 Sum_probs=183.5
Q ss_pred ccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CCCccc--cCCCCCCEEEccCCcCCcCCcccc-
Q psy3966 24 IKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNA--SKFTNLRSLDLSNNRITHLPQAIT- 99 (392)
Q Consensus 24 L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l--~~l~~L~~L~Ls~n~l~~l~~~~~- 99 (392)
|++|+|++|.+....++..+..- .. -...+++|++|++++|+++ .+|..+ ..+++|++|++++|+++.+|..+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFG-AL-RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHH-HH-HHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHH-HH-HhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHH
Confidence 89999999998553333333200 00 0013579999999999998 677776 899999999999999998876665
Q ss_pred C-----ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcc---cCccc--cCCcCCcEEECCCCCCCcCc---h
Q psy3966 100 N-----FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ---FPIQI--LDIPTLKYLYLGNNSLNHVP---R 166 (392)
Q Consensus 100 ~-----~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~l--~~l~~L~~L~l~~n~l~~l~---~ 166 (392)
+ ++|++|++++|.+.. ..+..+..+++|++|++++|++.. ++..+ ..+++|++|++++|.++.++ .
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 4 899999999999985 556889999999999999999763 34444 67999999999999999543 2
Q ss_pred -hhcCCCCccEEEccCCCCcccc--hhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcc
Q psy3966 167 -EINKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCL 243 (392)
Q Consensus 167 -~l~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 243 (392)
.+..+++|++|++++|.++..+ ..+..+++|++|++++|+++.+|..+. ++|++|++++|+++++|. +..+
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l--- 295 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDEL--- 295 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTS---
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhC---
Confidence 2457899999999999999754 456778999999999999999998776 899999999999998876 4444
Q ss_pred cccCcEEEccCCCCCC
Q psy3966 244 SEKLKSLLLHNNKLRT 259 (392)
Q Consensus 244 ~~~L~~L~l~~n~l~~ 259 (392)
++|+.|++++|.++.
T Consensus 296 -~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 -PQVGNLSLKGNPFLD 310 (312)
T ss_dssp -CEEEEEECTTCTTTC
T ss_pred -CCCCEEeccCCCCCC
Confidence 489999999999874
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=210.02 Aligned_cols=222 Identities=25% Similarity=0.403 Sum_probs=189.7
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCccc-c
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAI-T 99 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~-~ 99 (392)
+++++|+|++|.++..... .+..+++|++|+|++|.++.++ ..|.++++|++|+|++|+++.++... .
T Consensus 64 ~~l~~L~L~~n~i~~~~~~----------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN----------SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp TTCSEEECCSCCCCEECTT----------TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred CCCcEEEccCCcCCeeCHH----------HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 5789999999998763211 2246789999999999999765 56899999999999999999988754 3
Q ss_pred -CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC-CCcccCc-cccCCcCCcEEECCCCCCCcCchhhcCCCCccE
Q psy3966 100 -NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN-QLEQFPI-QILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176 (392)
Q Consensus 100 -~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~ 176 (392)
+.+|++|++++|.+.. ..+..+..+++|++|++++| .+..++. .+.++++|++|++++|.++.+| .+..+++|++
T Consensus 134 ~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDE 211 (440)
T ss_dssp SCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCE
T ss_pred ccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCE
Confidence 8999999999999984 44567899999999999994 6666665 4667999999999999999997 4788999999
Q ss_pred EEccCCCCccc-chhhcCCcCCCEEEccCCCCCCcc-hhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccC
Q psy3966 177 LSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254 (392)
Q Consensus 177 L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 254 (392)
|++++|.++.+ |..+..+++|++|++++|+++.++ ..+..+++|+.|+|++|+++.++...+. ..++|+.|++++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~ 288 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLERIHLHH 288 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS---SCTTCCEEECCS
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc---cccCCCEEEcCC
Confidence 99999999977 678999999999999999999765 4689999999999999999988876543 235899999999
Q ss_pred CCCC
Q psy3966 255 NKLR 258 (392)
Q Consensus 255 n~l~ 258 (392)
|.+.
T Consensus 289 Np~~ 292 (440)
T 3zyj_A 289 NPWN 292 (440)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 9875
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=226.20 Aligned_cols=106 Identities=25% Similarity=0.329 Sum_probs=62.2
Q ss_pred CCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCCh-hhHhhhcccccCc
Q psy3966 172 CKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPT-EIITLKCLSEKLK 248 (392)
Q Consensus 172 ~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~L~ 248 (392)
++|++|++++|.+..+ +..+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+++ .+..+ ++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL----PKVA 341 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC----TTCC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC----CCCC
Confidence 3455555555555543 34455666666666666666644 3356666666666666666665432 22222 3667
Q ss_pred EEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCc
Q psy3966 249 SLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 249 ~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~ 281 (392)
.|++++|.++.++. .+..+++|++|++++|.++
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 77777776665544 3555667777777777665
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=217.31 Aligned_cols=225 Identities=23% Similarity=0.266 Sum_probs=190.0
Q ss_pred CCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEe
Q psy3966 53 KKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132 (392)
Q Consensus 53 ~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 132 (392)
..+++|++|++++|.++.+|..+..+ +|++|++++|.++.+|. ..+.+|++|++++|.+.. ..+. ..+++|++|+
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~-~~~~--~~~~~L~~L~ 353 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGN-AFSE--VDLPSLEFLD 353 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCC-BCCC--CBCTTCCEEE
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccc-cccc--ccCCCCCEEe
Confidence 44678999999999999898888888 99999999999998876 347889999999998765 2332 6789999999
Q ss_pred ccCCCCccc---CccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccc--hhhcCCcCCCEEEccCCCC
Q psy3966 133 LSGNQLEQF---PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP--DTFGDLYQLEALILSDNQL 207 (392)
Q Consensus 133 l~~n~l~~l---~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~L~~n~l 207 (392)
+++|.++.. +..+..+++|++|++++|.+..++..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 999999855 56677899999999999999988777899999999999999998764 3688999999999999999
Q ss_pred CC-cchhhhCCcccceeeccCCcCC--CCChhhHhhhcccccCcEEEccCCCCCCC-CccccCCCCCCEEeCcCCCCccc
Q psy3966 208 ES-LPASISNLKMLKSLLLHNNKLR--TLPTEIITLKCLSEKLKSLLLHNNKLRTL-PTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 208 ~~-l~~~l~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
.. .|..+..+++|++|++++|.++ .+|..+..+ ++|+.|++++|.++.+ |..+..+++|++|++++|++++.
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchhhhhcc----cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 84 5567889999999999999986 466555544 4899999999999966 77888999999999999999865
Q ss_pred ccc
Q psy3966 284 FVS 286 (392)
Q Consensus 284 ~~~ 286 (392)
.+.
T Consensus 510 ~~~ 512 (570)
T 2z63_A 510 PDG 512 (570)
T ss_dssp CTT
T ss_pred CHH
Confidence 443
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.7e-26 Score=222.03 Aligned_cols=234 Identities=23% Similarity=0.222 Sum_probs=198.6
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT 99 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~ 99 (392)
.+++|++|||++|.+++.. +..+ ..+++|++|+|++|.++.+++ +..+++|++|+|++|.++.++.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~-~~~~---------~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~--- 97 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQIS-AADL---------APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--- 97 (487)
T ss_dssp TGGGCCEEECCSSCCCCCC-GGGG---------TTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE---
T ss_pred cCCCccEEEeeCCcCCCCC-HHHH---------hCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC---
Confidence 3458999999999998632 2222 356899999999999996655 8999999999999999997764
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCccc-CccccCCcCCcEEECCCCCCCc-Cchhhc-CCCCccE
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLNH-VPREIN-KLCKLHV 176 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~l~~-l~~~l~-~~~~L~~ 176 (392)
.++|++|++++|.++. ++. ..+++|++|++++|.++.+ |..+..+++|++|++++|.++. .|..+. .+++|++
T Consensus 98 ~~~L~~L~L~~N~l~~--~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 98 GPSIETLHAANNNISR--VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CTTCCEEECCSSCCCC--EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred CCCcCEEECcCCcCCC--CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 3889999999999985 222 3468999999999999976 5567789999999999999996 455665 7899999
Q ss_pred EEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC
Q psy3966 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 177 L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 256 (392)
|++++|.++.++. ...+++|++|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+ ++|+.|++++|.
T Consensus 174 L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l----~~L~~L~l~~N~ 248 (487)
T 3oja_A 174 LNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS----QNLEHFDLRGNG 248 (487)
T ss_dssp EECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC----TTCCEEECTTCC
T ss_pred EecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccC----CCCCEEEcCCCC
Confidence 9999999998865 45699999999999999999888999999999999999999988875544 489999999999
Q ss_pred CC--CCCccccCCCCCCEEeCc
Q psy3966 257 LR--TLPTEIITLKCLSELSLR 276 (392)
Q Consensus 257 l~--~l~~~l~~l~~L~~L~l~ 276 (392)
+. .+|..+..++.|+.++++
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 98 778888888888888886
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.9e-24 Score=211.91 Aligned_cols=222 Identities=34% Similarity=0.398 Sum_probs=164.0
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~ 101 (392)
.++++|++++|.++. ++.. .+++|++|++++|.++.+|. .+++|++|+|++|+++.+|. .+.
T Consensus 40 ~~l~~L~ls~n~L~~--lp~~-----------l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~ 101 (622)
T 3g06_A 40 NGNAVLNVGESGLTT--LPDC-----------LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPP 101 (622)
T ss_dssp HCCCEEECCSSCCSC--CCSC-----------CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCT
T ss_pred CCCcEEEecCCCcCc--cChh-----------hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCC
Confidence 368999999999873 2221 13689999999999999987 57999999999999999987 678
Q ss_pred cchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccC
Q psy3966 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGG 181 (392)
Q Consensus 102 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~ 181 (392)
+|++|++++|.++. +|. .+++|+.|++++|+++.+|.. +++|++|++++|.++.+|. ..++|+.|++++
T Consensus 102 ~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 102 GLLELSIFSNPLTH--LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYN 170 (622)
T ss_dssp TCCEEEECSCCCCC--CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred CCCEEECcCCcCCC--CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCC
Confidence 99999999999884 554 568999999999999998864 4899999999999998875 346899999999
Q ss_pred CCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHh-------------hhcccccCc
Q psy3966 182 NSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIIT-------------LKCLSEKLK 248 (392)
Q Consensus 182 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-------------~~~~~~~L~ 248 (392)
|.++.+| ..+++|+.|++++|.++.+|..+ ++|+.|++++|.++.+|..... ++..+++|+
T Consensus 171 N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~---~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~ 244 (622)
T 3g06_A 171 NQLTSLP---MLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELK 244 (622)
T ss_dssp SCCSCCC---CCCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CCCCCCc---ccCCCCcEEECCCCCCCCCCCcc---chhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCc
Confidence 9999998 45788999999999988776532 3444555555544444321100 000113455
Q ss_pred EEEccCCCCCCCCccccCCCCCCEEeCcCCCCc
Q psy3966 249 SLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 249 ~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~ 281 (392)
.|++++|.|+.+|. .+++|+.|++++|.++
T Consensus 245 ~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 245 ELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSCCC
T ss_pred EEECCCCCCCcCCc---ccccCcEEeCCCCCCC
Confidence 55555555555554 3445555555555554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=3.3e-24 Score=207.94 Aligned_cols=222 Identities=23% Similarity=0.349 Sum_probs=189.4
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCcccc-
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAIT- 99 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~~- 99 (392)
+++++|||++|.+++... . .+..+++|++|+|++|+++.++ ..|.++++|++|+|++|+++.++....
T Consensus 75 ~~l~~L~L~~n~i~~~~~-~---------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-D---------TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp TTCSEEECCSSCCCEECT-T---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred CCccEEECcCCcCceECH-H---------HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 579999999999876321 1 1245789999999999999664 678999999999999999998887644
Q ss_pred -CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccC-CCCcccCc-cccCCcCCcEEECCCCCCCcCchhhcCCCCccE
Q psy3966 100 -NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG-NQLEQFPI-QILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176 (392)
Q Consensus 100 -~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~ 176 (392)
+.+|++|++++|.+.. ..+..+.++++|++|++++ +.+..++. .+..+++|++|++++|.++.+| .+..+++|++
T Consensus 145 ~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEE 222 (452)
T ss_dssp SCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCE
T ss_pred ccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccE
Confidence 8999999999999984 4455789999999999999 56667765 4667999999999999999886 5788999999
Q ss_pred EEccCCCCccc-chhhcCCcCCCEEEccCCCCCCcc-hhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccC
Q psy3966 177 LSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254 (392)
Q Consensus 177 L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 254 (392)
|++++|.++.+ |..+..+++|++|++++|+++.++ ..+..+++|+.|++++|+++.++...+. ..++|+.|++++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~ 299 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT---PLRYLVELHLHH 299 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST---TCTTCCEEECCS
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc---cccCCCEEEccC
Confidence 99999999977 678999999999999999999664 5789999999999999999988876543 225899999999
Q ss_pred CCCC
Q psy3966 255 NKLR 258 (392)
Q Consensus 255 n~l~ 258 (392)
|.+.
T Consensus 300 Np~~ 303 (452)
T 3zyi_A 300 NPWN 303 (452)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 9875
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=225.53 Aligned_cols=247 Identities=23% Similarity=0.296 Sum_probs=167.1
Q ss_pred cccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCC-ccc
Q psy3966 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLP-QAI 98 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~-~~~ 98 (392)
.++|++||+++|.+.+.. + ..+..+++|++|+|++|+++.+ +..+..+++|++|++++|.++.++ ..+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~-~---------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLN-S---------RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp TSCCCEEECTTCCCCEEC-S---------CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred cCCccEEECCCCcccccC-h---------hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 367888888888876521 1 1224567888888888888854 556788888888888888888664 344
Q ss_pred c-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCch-----------
Q psy3966 99 T-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR----------- 166 (392)
Q Consensus 99 ~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~----------- 166 (392)
. +++|++|++++|.+.. ..+..+..+++|++|++++|.++.++. +++|+.|++++|.++.+|.
T Consensus 335 ~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp SSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred cCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecc
Confidence 4 7888888888888764 445567788888888888888775542 4445555554444443332
Q ss_pred -----------hhcCCCCccEEEccCCCCcccch--hhcCCcCCCEEEccCCCCCCc------chhhhCCcccceeeccC
Q psy3966 167 -----------EINKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESL------PASISNLKMLKSLLLHN 227 (392)
Q Consensus 167 -----------~l~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~l------~~~l~~l~~L~~L~L~~ 227 (392)
.+..+++|++|++++|.++.++. .+..+++|++|++++|.++.+ +..+..+++|+.|++++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 23467777777777777775432 245567777777777777522 23466777788888888
Q ss_pred CcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcccccc
Q psy3966 228 NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVS 286 (392)
Q Consensus 228 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~ 286 (392)
|.++++++..+. ..++|+.|++++|+++.+|..... ++|+.|++++|.+++..+.
T Consensus 490 N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 490 NYLNSLPPGVFS---HLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp HHHTTCCTTSSS---SCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSC
T ss_pred CcccccChhHcc---chhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChh
Confidence 877766654322 224788888888888777665444 6778888888877765543
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=7.2e-24 Score=213.68 Aligned_cols=128 Identities=23% Similarity=0.268 Sum_probs=73.5
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCcccc--
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQAIT-- 99 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~~~~-- 99 (392)
++++||||+|.|+... .. .+..+++|++|+|++|+|+.+++ .|.++++|++|+|++|+++.+|...+
T Consensus 53 ~~~~LdLs~N~i~~l~---------~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLG---------SY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TCCEEECTTSCCCEEC---------TT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CCCEEEeeCCCCCCCC---------HH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 5677777777765411 11 11344566666666666665543 35666666666666666666665432
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcc--cCccccCCcCCcEEECCCCCC
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ--FPIQILDIPTLKYLYLGNNSL 161 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~l 161 (392)
+.+|++|++++|.++. ..+..|+++++|++|++++|.++. +|..+..+++|++|++++|.+
T Consensus 123 L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 123 LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 5666666666666653 223345666666666666666653 344445556666666655544
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=201.71 Aligned_cols=218 Identities=23% Similarity=0.267 Sum_probs=161.3
Q ss_pred CccEEEccCCCCC--CCCc--cccCCCCCCEEEccCCcCC-cCCccc--c-CccchhhhhhcCCCCCCCCC----ccCCC
Q psy3966 57 NIDTLLLYHNNLS--FFPD--NASKFTNLRSLDLSNNRIT-HLPQAI--T-NFPLSTLIARNNLLTAESLP----KDMSN 124 (392)
Q Consensus 57 ~L~~L~L~~n~l~--~i~~--~l~~l~~L~~L~Ls~n~l~-~l~~~~--~-~~~L~~L~l~~n~~~~~~~~----~~~~~ 124 (392)
.++.+.+.++.++ .+.. .+..+++|++|++++|.++ ..|..+ . +.+|++|++++|.++. ..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhh
Confidence 4566666666554 1111 1122345666666666665 333332 3 5666666666666654 222 33457
Q ss_pred CCCCcEEeccCCCCcccC-ccccCCcCCcEEECCCCCCCc---Cch--hhcCCCCccEEEccCCCCcccch----hhcCC
Q psy3966 125 LKNLKVFNLSGNQLEQFP-IQILDIPTLKYLYLGNNSLNH---VPR--EINKLCKLHVLSLGGNSLTDIPD----TFGDL 194 (392)
Q Consensus 125 l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~l~~---l~~--~l~~~~~L~~L~l~~n~l~~l~~----~l~~l 194 (392)
+++|++|++++|.++.++ ..+..+++|++|++++|.+.. ++. .+..+++|++|++++|+++.++. .++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 889999999999998765 466679999999999998763 322 24678899999999999987654 25788
Q ss_pred cCCCEEEccCCCCCCc-chhhhCC---cccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCC
Q psy3966 195 YQLEALILSDNQLESL-PASISNL---KMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCL 270 (392)
Q Consensus 195 ~~L~~L~L~~n~l~~l-~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L 270 (392)
++|++|++++|+++.+ |..+..+ ++|++|++++|+++.+|..+. ++|+.|++++|+++.+|. +..+++|
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~------~~L~~L~Ls~N~l~~~~~-~~~l~~L 296 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP------AKLRVLDLSSNRLNRAPQ-PDELPEV 296 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC------SCCSCEECCSCCCCSCCC-TTSCCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc------CCCCEEECCCCcCCCCch-hhhCCCc
Confidence 9999999999999966 6666665 699999999999999887653 489999999999998866 6788999
Q ss_pred CEEeCcCCCCcc
Q psy3966 271 SELSLRDNPLVI 282 (392)
Q Consensus 271 ~~L~l~~N~l~~ 282 (392)
+.|++++|++++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999874
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=6.1e-24 Score=195.50 Aligned_cols=191 Identities=25% Similarity=0.410 Sum_probs=134.3
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccC
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 135 (392)
++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-------------------------~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-------------------------LKNLTKITELELSG 94 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-------------------------GTTCCSCCEEECCS
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-------------------------HccCCCCCEEEccC
Confidence 46777777777777665 46667777777777777665432 55667777777777
Q ss_pred CCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhh
Q psy3966 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASIS 215 (392)
Q Consensus 136 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~ 215 (392)
|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +.
T Consensus 95 n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 170 (308)
T 1h6u_A 95 NPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LA 170 (308)
T ss_dssp CCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred CcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hc
Confidence 7776654 46667777777777777776643 6777777777777777776654 6777777777777777777655 67
Q ss_pred CCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCcc
Q psy3966 216 NLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 216 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
.+++|+.|++++|.+++++. +.. .++|+.|++++|.++.+++ +..+++|++|++++|++++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~-l~~----l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP-LAS----LPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGG----CTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEECCCCccCcChh-hcC----CCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 77777777777777776654 222 2477888888888777763 6777788888888887754
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.1e-23 Score=187.19 Aligned_cols=160 Identities=33% Similarity=0.522 Sum_probs=104.8
Q ss_pred cCCCCCCCcEEeccCCCCcccCccc-cCCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCcccc-hhhcCCcCC
Q psy3966 121 DMSNLKNLKVFNLSGNQLEQFPIQI-LDIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTDIP-DTFGDLYQL 197 (392)
Q Consensus 121 ~~~~l~~L~~L~l~~n~l~~l~~~l-~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L 197 (392)
.+.++++|++|++++|.++.++... ..+++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..+..+++|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 3445555555555555555554433 335556666666666555543 3455666666666666666554 345667777
Q ss_pred CEEEccCCCCCCcchh-hhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEeC
Q psy3966 198 EALILSDNQLESLPAS-ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELSL 275 (392)
Q Consensus 198 ~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l 275 (392)
++|++++|.++.++.. +..+++|+.|++++|.++.++...+. ..++|+.|++++|.++.+|.. +..+++|+.|++
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD---KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc---cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 7777777777766653 67777777777777777776654322 124788888888888877764 666899999999
Q ss_pred cCCCCccc
Q psy3966 276 RDNPLVIR 283 (392)
Q Consensus 276 ~~N~l~~~ 283 (392)
++|++...
T Consensus 213 ~~N~~~c~ 220 (270)
T 2o6q_A 213 QENPWDCT 220 (270)
T ss_dssp CSSCBCCS
T ss_pred cCCCeeCC
Confidence 99998754
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.2e-23 Score=210.06 Aligned_cols=268 Identities=23% Similarity=0.296 Sum_probs=185.5
Q ss_pred CCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcC
Q psy3966 16 SDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHL 94 (392)
Q Consensus 16 ~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l 94 (392)
.++.++++|++|||++|.|++.. .. .+..+++|++|+|++|+++.+|. .|.++++|++|++++|+++.+
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~---------~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIE---------DG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEEC---------TT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred HHHhCCCCCCEEECCCCcCCCcC---------hh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCC
Confidence 35678899999999999987521 11 12456889999999999987765 478899999999999999888
Q ss_pred Cccc-c-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-c--------------------------
Q psy3966 95 PQAI-T-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-I-------------------------- 145 (392)
Q Consensus 95 ~~~~-~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l-------------------------- 145 (392)
+... . +.+|++|++++|.+.....|..+..+++|++|++++|+++.++.. +
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 7653 3 788999999999887656777888888888888888776532110 0
Q ss_pred --------------------------------------------------------------------------------
Q psy3966 146 -------------------------------------------------------------------------------- 145 (392)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (392)
T Consensus 220 ~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 299 (635)
T 4g8a_A 220 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII 299 (635)
T ss_dssp TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT
T ss_pred cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh
Confidence
Q ss_pred --------------------------------------------------------------------cCCcCCcEEECC
Q psy3966 146 --------------------------------------------------------------------LDIPTLKYLYLG 157 (392)
Q Consensus 146 --------------------------------------------------------------------~~l~~L~~L~l~ 157 (392)
..+++|+.++++
T Consensus 300 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 379 (635)
T ss_dssp TTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECC
T ss_pred hhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhh
Confidence 001233344444
Q ss_pred CCCCCc---Cc------------------------------------------------hhhcCCCCccEEEccCCCCcc
Q psy3966 158 NNSLNH---VP------------------------------------------------REINKLCKLHVLSLGGNSLTD 186 (392)
Q Consensus 158 ~n~l~~---l~------------------------------------------------~~l~~~~~L~~L~l~~n~l~~ 186 (392)
.|.+.. .+ ..+..+++++.++++.|.+..
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 443310 00 012233445555666666664
Q ss_pred c-chhhcCCcCCCEEEccCCCCC--CcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc-
Q psy3966 187 I-PDTFGDLYQLEALILSDNQLE--SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT- 262 (392)
Q Consensus 187 l-~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~- 262 (392)
+ +..+..++.+++|++++|.+. ..|..+..+++|++|++++|+++++++..+. ..++|++|+|++|+|+.++.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~---~l~~L~~L~Ls~N~l~~l~~~ 536 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMSHNNFFSLDTF 536 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT---TCTTCCEEECTTSCCCBCCCG
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc---CCCCCCEEECCCCcCCCCChh
Confidence 4 456677888999999888754 3556788888899999999988877554322 22488999999998887754
Q ss_pred cccCCCCCCEEeCcCCCCccccccCccCCCCCHH
Q psy3966 263 EIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLL 296 (392)
Q Consensus 263 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~l~ 296 (392)
.+..+++|++|++++|++++..+..+...+..+.
T Consensus 537 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 5677888999999999888776665554444444
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2e-25 Score=210.25 Aligned_cols=292 Identities=17% Similarity=0.206 Sum_probs=182.2
Q ss_pred EEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-----ccccCCC-CCCEEEccCCcCCcCCc-cc
Q psy3966 26 TLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-----DNASKFT-NLRSLDLSNNRITHLPQ-AI 98 (392)
Q Consensus 26 ~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-----~~l~~l~-~L~~L~Ls~n~l~~l~~-~~ 98 (392)
.+++++|.+++. ++..+ ..+++|++|+|++|.++..+ ..+..++ +|++|+|++|.++.... .+
T Consensus 2 ~~~ls~n~~~~~-~~~~~---------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 2 NYKLTLHPGSNP-VEEFT---------SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp EEECCCCTTCCH-HHHHH---------TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred ccccccccchHH-HHHHH---------hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence 467788887762 33332 23456888888888887554 4567777 78888888888875433 22
Q ss_pred c-C-----ccchhhhhhcCCCCCCCCCc----cCCCC-CCCcEEeccCCCCcccCcc-----ccC-CcCCcEEECCCCCC
Q psy3966 99 T-N-----FPLSTLIARNNLLTAESLPK----DMSNL-KNLKVFNLSGNQLEQFPIQ-----ILD-IPTLKYLYLGNNSL 161 (392)
Q Consensus 99 ~-~-----~~L~~L~l~~n~~~~~~~~~----~~~~l-~~L~~L~l~~n~l~~l~~~-----l~~-l~~L~~L~l~~n~l 161 (392)
. . .+|++|++++|.++. ..+. .+..+ ++|++|++++|.++..+.. +.. .++|++|++++|.+
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHhccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 2 2 778888888888775 2233 24455 7999999999999855432 233 36999999999998
Q ss_pred C-----cCchhhcCCC-CccEEEccCCCCcccc-----hhhcCC-cCCCEEEccCCCCCC-----cchhhhC-Cccccee
Q psy3966 162 N-----HVPREINKLC-KLHVLSLGGNSLTDIP-----DTFGDL-YQLEALILSDNQLES-----LPASISN-LKMLKSL 223 (392)
Q Consensus 162 ~-----~l~~~l~~~~-~L~~L~l~~n~l~~l~-----~~l~~l-~~L~~L~L~~n~l~~-----l~~~l~~-l~~L~~L 223 (392)
+ .++..+...+ +|++|++++|.++... ..+... ++|++|++++|.++. ++..+.. .++|++|
T Consensus 151 ~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 151 GIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEE
T ss_pred CHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEE
Confidence 8 3455566665 9999999999998543 245556 599999999999986 6666665 4599999
Q ss_pred eccCCcCCCCChh-hHhhhcccccCcEEEccCCCCCCC--------CccccCCCCCCEEeCcCCCCccccccCc------
Q psy3966 224 LLHNNKLRTLPTE-IITLKCLSEKLKSLLLHNNKLRTL--------PTEIITLKCLSELSLRDNPLVIRFVSDM------ 288 (392)
Q Consensus 224 ~L~~n~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l--------~~~l~~l~~L~~L~l~~N~l~~~~~~~~------ 288 (392)
++++|.++..+.. +.......++|+.|++++|.++.+ +..+..+++|++||+++|++.+..+..+
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 9999999876653 333334456899999999985433 3456678899999999999976522111
Q ss_pred ---cCCCCCHHHHHHhhhhccccCCCCCCCcHhHHHHHHhcCC
Q psy3966 289 ---TYKPPSLLELASRTLKVHEIDYSQEHLPQNLVQYLESAHH 328 (392)
Q Consensus 289 ---~~~~~~l~~L~~~~~~~~~~~~~~~~lp~~~~~~l~~~~~ 328 (392)
....+++..........+.+++....+|..+.++++.++.
T Consensus 311 ~~~~~~~psll~~~~~~~~~n~~~~~~~~iP~~l~~~i~~~~~ 353 (362)
T 3goz_A 311 LSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353 (362)
T ss_dssp HHTCCCTTTC---------------------------------
T ss_pred CCCCcchHHHHhhhhheeeccccCcchhhCcHHHHHHHHhchh
Confidence 1122333333322233344455567788877777665543
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3e-23 Score=187.26 Aligned_cols=208 Identities=33% Similarity=0.500 Sum_probs=121.2
Q ss_pred cccCCCCCCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEc
Q psy3966 8 SSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDL 86 (392)
Q Consensus 8 ~~~~~~~~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~L 86 (392)
.|.+..|.... +.+++|++++.++. ++.. .++++++|++++|+++.++. .+.++++|++|++
T Consensus 6 ~~~~~~C~c~~----~~~~l~~~~~~l~~--ip~~-----------~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 6 KKDGGVCSCNN----NKNSVDCSSKKLTA--IPSN-----------IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL 68 (270)
T ss_dssp GGGTCSBEEET----TTTEEECTTSCCSS--CCSC-----------CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC
T ss_pred CCCCCCCEeCC----CCCEEEccCCCCCc--cCCC-----------CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC
Confidence 36666665543 57899999998874 2211 23679999999999997765 6888999999999
Q ss_pred cCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCCCCCCcCc
Q psy3966 87 SNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVP 165 (392)
Q Consensus 87 s~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~ 165 (392)
++|.++.++... +..+++|++|++++|.++.++.. +..+++|++|++++|.++.++
T Consensus 69 ~~n~l~~i~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 69 NDNKLQTLPAGI-----------------------FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp CSSCCSCCCTTT-----------------------TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCccCeeChhh-----------------------hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC
Confidence 999988776533 33445555555555555544432 233555555555555555443
Q ss_pred h-hhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhc
Q psy3966 166 R-EINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKC 242 (392)
Q Consensus 166 ~-~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 242 (392)
. .+..+++|++|++++|.++.+|. .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++...+.
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--- 202 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD--- 202 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT---
T ss_pred HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc---
Confidence 2 24455555555555555554443 24455555555555555554443 344555555555555555554443221
Q ss_pred ccccCcEEEccCCCCC
Q psy3966 243 LSEKLKSLLLHNNKLR 258 (392)
Q Consensus 243 ~~~~L~~L~l~~n~l~ 258 (392)
..++|+.|++++|.+.
T Consensus 203 ~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSSCBC
T ss_pred cccCCCEEEecCCCee
Confidence 1125555555555543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.6e-23 Score=190.94 Aligned_cols=200 Identities=30% Similarity=0.415 Sum_probs=122.3
Q ss_pred CccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCC-CccccCCCCCCEEEccCCcCCcCC
Q psy3966 17 DSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF-PDNASKFTNLRSLDLSNNRITHLP 95 (392)
Q Consensus 17 ~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~Ls~n~l~~l~ 95 (392)
...+++++++++++++.++. ++. ..++++++|+|++|.++.+ +..+..+++|++|++++|.++.++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~-----------~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPP-----------DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCS-----------CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred cccccCCccEEECCCCCCCc--CCC-----------CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc
Confidence 35678899999999999874 221 1236899999999999965 456899999999999999999776
Q ss_pred ccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCc-hhhcCCCCc
Q psy3966 96 QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP-REINKLCKL 174 (392)
Q Consensus 96 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~-~~l~~~~~L 174 (392)
.. ..+++|++|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|
T Consensus 72 ~~-------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 72 VD-------------------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp CC-------------------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred CC-------------------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 43 2344555555555555555544444555555555555555443 234555555
Q ss_pred cEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcchh-hhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEc
Q psy3966 175 HVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPAS-ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLL 252 (392)
Q Consensus 175 ~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 252 (392)
++|++++|+++.+|. .+..+++|++|++++|+++.+|.. +..+++|+.|++++|+++.+|..++... +|+.+++
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~----~L~~l~L 202 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH----LLPFAFL 202 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----CCSEEEC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccc----cCCeEEe
Confidence 555555555554432 234555555555555555555442 3445555555555555555555444332 4555555
Q ss_pred cCCCCC
Q psy3966 253 HNNKLR 258 (392)
Q Consensus 253 ~~n~l~ 258 (392)
++|.+.
T Consensus 203 ~~Np~~ 208 (290)
T 1p9a_G 203 HGNPWL 208 (290)
T ss_dssp CSCCBC
T ss_pred CCCCcc
Confidence 555543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-23 Score=190.23 Aligned_cols=201 Identities=25% Similarity=0.291 Sum_probs=141.3
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCccccC
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQAITN 100 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~~~~~ 100 (392)
++|++||+++|.+++.... .+..+++|++|++++|+++.++. .+.++++|++|++++|.++.++.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY----------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---- 93 (276)
T ss_dssp TTCCEEECTTCCCCEECTT----------TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT----
T ss_pred CCccEEECCCCcccccCHh----------HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh----
Confidence 4799999999998763211 12456899999999999997654 68899999999999999986652
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCc-cccCCcCCcEEECCCCCCCc--CchhhcCCCCccEE
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLNH--VPREINKLCKLHVL 177 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L 177 (392)
..+.++++|++|++++|.++.++. .+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 94 -------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 94 -------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp -------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred -------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 345566777777777777765544 45567777777777777764 56667777777777
Q ss_pred EccCCCCcccc-hhhcCCcCCC----EEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEc
Q psy3966 178 SLGGNSLTDIP-DTFGDLYQLE----ALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLL 252 (392)
Q Consensus 178 ~l~~n~l~~l~-~~l~~l~~L~----~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 252 (392)
++++|+++.++ ..+..+++|+ +|++++|.++.++.......+|+.|++++|.++.+|...+. ..++|+.|++
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~l 231 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD---RLTSLQKIWL 231 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT---TCCSCCEEEC
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc---ccccccEEEc
Confidence 77777777653 3455555555 67777777776665554555777777777777776665432 1246777777
Q ss_pred cCCCCC
Q psy3966 253 HNNKLR 258 (392)
Q Consensus 253 ~~n~l~ 258 (392)
++|.++
T Consensus 232 ~~N~~~ 237 (276)
T 2z62_A 232 HTNPWD 237 (276)
T ss_dssp CSSCBC
T ss_pred cCCccc
Confidence 777765
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.1e-23 Score=190.82 Aligned_cols=200 Identities=21% Similarity=0.362 Sum_probs=131.7
Q ss_pred CccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCc
Q psy3966 17 DSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ 96 (392)
Q Consensus 17 ~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~ 96 (392)
...++++|++|+++++.++.. + .+ ..+++|++|++++|.++.++. +..+++|++|++++|+++.++.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l--~-~~---------~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 102 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTI--E-GV---------QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA 102 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCC--T-TG---------GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG
T ss_pred cHHHcCCcCEEEeeCCCccCc--h-hh---------hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchh
Confidence 344688999999999998752 2 12 346899999999999998887 9999999999999999887642
Q ss_pred cccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccE
Q psy3966 97 AITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176 (392)
Q Consensus 97 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~ 176 (392)
+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++
T Consensus 103 -------------------------~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 103 -------------------------IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQY 155 (308)
T ss_dssp -------------------------GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCE
T ss_pred -------------------------hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccE
Confidence 3445556666666666555543 4555666666666666655543 555566666
Q ss_pred EEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC
Q psy3966 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 177 L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 256 (392)
|++++|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++++|+++++++ +.. .++|+.|++++|.
T Consensus 156 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~----l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LAN----TSNLFIVTLTNQT 228 (308)
T ss_dssp EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTT----CTTCCEEEEEEEE
T ss_pred EEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccC----CCCCCEEEccCCe
Confidence 6666666665544 5566666666666666665544 5556666666666666665543 222 2366666666666
Q ss_pred CCCCCcc
Q psy3966 257 LRTLPTE 263 (392)
Q Consensus 257 l~~l~~~ 263 (392)
++..|..
T Consensus 229 i~~~~~~ 235 (308)
T 1h6u_A 229 ITNQPVF 235 (308)
T ss_dssp EECCCEE
T ss_pred eecCCee
Confidence 6555443
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3.5e-25 Score=215.15 Aligned_cols=260 Identities=22% Similarity=0.242 Sum_probs=155.7
Q ss_pred cccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCC-----CCccccCCCCCCEEEccCCcCCc
Q psy3966 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSF-----FPDNASKFTNLRSLDLSNNRITH 93 (392)
Q Consensus 19 ~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~Ls~n~l~~ 93 (392)
.++++|++||+++|.+++.+.......+. ...++|++|++++|+++. ++..+..+++|++|++++|.++.
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLL-----DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHT-----STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHh-----cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 34555566666665554433332222111 122356666666666652 23445556677777777776652
Q ss_pred C-----Ccccc--CccchhhhhhcCCCCCCC---CCccCCCCCCCcEEeccCCCCccc-----Ccccc-CCcCCcEEECC
Q psy3966 94 L-----PQAIT--NFPLSTLIARNNLLTAES---LPKDMSNLKNLKVFNLSGNQLEQF-----PIQIL-DIPTLKYLYLG 157 (392)
Q Consensus 94 l-----~~~~~--~~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~l-----~~~l~-~l~~L~~L~l~ 157 (392)
. ...+. ..+|++|++++|.++... ++..+..+++|++|++++|.++.. ...+. .+++|++|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 1 11111 346777777777766421 345556677777777777776632 12222 46777777777
Q ss_pred CCCCCc-----CchhhcCCCCccEEEccCCCCccc-----chhhc-CCcCCCEEEccCCCCCC-----cchhhhCCcccc
Q psy3966 158 NNSLNH-----VPREINKLCKLHVLSLGGNSLTDI-----PDTFG-DLYQLEALILSDNQLES-----LPASISNLKMLK 221 (392)
Q Consensus 158 ~n~l~~-----l~~~l~~~~~L~~L~l~~n~l~~l-----~~~l~-~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~ 221 (392)
+|.++. ++..+..+++|++|++++|.++.. ...+. ..++|++|++++|.++. ++..+..+++|+
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 344 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence 777774 566666677777788877777632 22222 23577788888877773 345566677888
Q ss_pred eeeccCCcCCCCC-hhhHh-hhcccccCcEEEccCCCCC-----CCCccccCCCCCCEEeCcCCCCccc
Q psy3966 222 SLLLHNNKLRTLP-TEIIT-LKCLSEKLKSLLLHNNKLR-----TLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 222 ~L~L~~n~l~~~~-~~~~~-~~~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
+|++++|.+++.. ..+.. +....++|+.|++++|.++ .+|..+..+++|++|++++|++++.
T Consensus 345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 8888888776432 22221 1111347888888888877 5677777778888888888877654
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.9e-23 Score=183.09 Aligned_cols=195 Identities=23% Similarity=0.329 Sum_probs=144.6
Q ss_pred CCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCc-CCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEec
Q psy3966 56 ENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNR-ITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~-l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 133 (392)
++|++|++++|+++.++. .+.++++|++|++++|+ ++.++. ..+..+++|++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----------------------~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-----------------------HSFYNLSKVTHIEI 87 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-----------------------TTEESCTTCCEEEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-----------------------hHcCCCcCCcEEEC
Confidence 478888888888887665 57788888888888886 776653 34566777888888
Q ss_pred cC-CCCcccCc-cccCCcCCcEEECCCCCCCcCchhhcCCCCcc---EEEccCC-CCcccch-hhcCCcCCC-EEEccCC
Q psy3966 134 SG-NQLEQFPI-QILDIPTLKYLYLGNNSLNHVPREINKLCKLH---VLSLGGN-SLTDIPD-TFGDLYQLE-ALILSDN 205 (392)
Q Consensus 134 ~~-n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~---~L~l~~n-~l~~l~~-~l~~l~~L~-~L~L~~n 205 (392)
++ |.++.++. .+.++++|++|++++|.++.+|. +..+++|+ +|++++| .++.++. .+..+++|+ +|++++|
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 87 77776654 45567788888888888777765 66777776 8888888 7877764 477788888 8888888
Q ss_pred CCCCcchhhhCCcccceeeccCCc-CCCCChhhHhhhccc-ccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCC
Q psy3966 206 QLESLPASISNLKMLKSLLLHNNK-LRTLPTEIITLKCLS-EKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279 (392)
Q Consensus 206 ~l~~l~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~ 279 (392)
+++.+|......++|+.|++++|+ ++.++...+. .. ++|+.|++++|.++.+|.. .+++|+.|+++++.
T Consensus 167 ~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~---~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG---GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTT---TCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhh---ccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 888777654344788888888884 8777654332 12 3788888888888888765 56788888887763
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1e-24 Score=211.90 Aligned_cols=259 Identities=19% Similarity=0.195 Sum_probs=171.5
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-----CCCccccCCCCCCEEEccCCcCCcC
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-----FFPDNASKFTNLRSLDLSNNRITHL 94 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-----~i~~~l~~l~~L~~L~Ls~n~l~~l 94 (392)
.+++|++|||++|.+++.........+.. ...+|++|++++|.++ .++..+..+++|++|++++|.++..
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-----~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQT-----PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCS-----TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhh-----CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 44667777777777665444443332211 1126888888888777 3456677778888888888877621
Q ss_pred -----Ccccc--CccchhhhhhcCCCCCCC---CCccCCCCCCCcEEeccCCCCccc-Ccccc-----CCcCCcEEECCC
Q psy3966 95 -----PQAIT--NFPLSTLIARNNLLTAES---LPKDMSNLKNLKVFNLSGNQLEQF-PIQIL-----DIPTLKYLYLGN 158 (392)
Q Consensus 95 -----~~~~~--~~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~-----~l~~L~~L~l~~ 158 (392)
...+. ..+|++|++++|.++... ++..+..+++|++|++++|.++.. +..+. ..++|++|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 11211 346888888888776422 244556678888888888887632 11121 245888888888
Q ss_pred CCCCc-----CchhhcCCCCccEEEccCCCCccc-----ch-hhcCCcCCCEEEccCCCCCC-----cchhhhCCcccce
Q psy3966 159 NSLNH-----VPREINKLCKLHVLSLGGNSLTDI-----PD-TFGDLYQLEALILSDNQLES-----LPASISNLKMLKS 222 (392)
Q Consensus 159 n~l~~-----l~~~l~~~~~L~~L~l~~n~l~~l-----~~-~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~ 222 (392)
|.++. ++..+..+++|++|++++|.++.. .+ .+..+++|++|++++|.++. ++..+..+++|++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 88875 466677788888888888887742 12 22357888888888888885 6667777888888
Q ss_pred eeccCCcCCCCCh-hhHhh-hcccccCcEEEccCCCCCC-----CCccccCCCCCCEEeCcCCCCccc
Q psy3966 223 LLLHNNKLRTLPT-EIITL-KCLSEKLKSLLLHNNKLRT-----LPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 223 L~L~~n~l~~~~~-~~~~~-~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
|++++|.+++... .+... ....++|+.|++++|.++. ++..+..+++|++|++++|.+++.
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 8888888763222 22211 1122478888888888863 456666778888888888887654
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.4e-25 Score=209.08 Aligned_cols=226 Identities=20% Similarity=0.261 Sum_probs=156.2
Q ss_pred CCccEEEccCCCCCC-----CCccccCCCCCCEEEccCCcCCc----CCccc-------c-CccchhhhhhcCCCCCC--
Q psy3966 56 ENIDTLLLYHNNLSF-----FPDNASKFTNLRSLDLSNNRITH----LPQAI-------T-NFPLSTLIARNNLLTAE-- 116 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~Ls~n~l~~----l~~~~-------~-~~~L~~L~l~~n~~~~~-- 116 (392)
++|++|+|++|.++. ++..+..+++|++|+|++|.+.. +|..+ . +++|++|++++|.++..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 445555555555541 22234455555555555544332 22222 2 45555555555555432
Q ss_pred -CCCccCCCCCCCcEEeccCCCCcc-----cCccccCC---------cCCcEEECCCCCCC--cCc---hhhcCCCCccE
Q psy3966 117 -SLPKDMSNLKNLKVFNLSGNQLEQ-----FPIQILDI---------PTLKYLYLGNNSLN--HVP---REINKLCKLHV 176 (392)
Q Consensus 117 -~~~~~~~~l~~L~~L~l~~n~l~~-----l~~~l~~l---------~~L~~L~l~~n~l~--~l~---~~l~~~~~L~~ 176 (392)
.++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|.++ .++ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 245567788999999999998872 23333334 89999999999987 344 46778889999
Q ss_pred EEccCCCCc--c----cchhhcCCcCCCEEEccCCCC-----CCcchhhhCCcccceeeccCCcCCCC-----ChhhHhh
Q psy3966 177 LSLGGNSLT--D----IPDTFGDLYQLEALILSDNQL-----ESLPASISNLKMLKSLLLHNNKLRTL-----PTEIITL 240 (392)
Q Consensus 177 L~l~~n~l~--~----l~~~l~~l~~L~~L~L~~n~l-----~~l~~~l~~l~~L~~L~L~~n~l~~~-----~~~~~~~ 240 (392)
|++++|.++ . ++..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.++.. +..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~- 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK- 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT-
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh-
Confidence 999999988 2 233788899999999999998 45777888999999999999998743 222211
Q ss_pred hcccccCcEEEccCCCCCC-----CCccc-cCCCCCCEEeCcCCCCccc
Q psy3966 241 KCLSEKLKSLLLHNNKLRT-----LPTEI-ITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 241 ~~~~~~L~~L~l~~n~l~~-----l~~~l-~~l~~L~~L~l~~N~l~~~ 283 (392)
...++|+.|++++|.++. +|..+ .++++|++|++++|++++.
T Consensus 271 -~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 271 -LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp -CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred -ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 113589999999999986 88877 5589999999999998754
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.7e-23 Score=186.92 Aligned_cols=200 Identities=30% Similarity=0.410 Sum_probs=129.2
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccC
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 135 (392)
++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-------------------------~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-------------------------ALKELTNLTYLILTG 94 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-------------------------GGTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-------------------------hhcCCCCCCEEECCC
Confidence 46667777776666554 3566667777777766665432 345666677777777
Q ss_pred CCCcccCcc-ccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcch
Q psy3966 136 NQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA 212 (392)
Q Consensus 136 n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~ 212 (392)
|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .++.+++|++|++++|+++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 776655543 34567777777777777665443 5666777777777777776644 35667777777777777776654
Q ss_pred -hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccccccCccC
Q psy3966 213 -SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTY 290 (392)
Q Consensus 213 -~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 290 (392)
.+..+++|+.|++++|.++++++.... ..++|+.|++++|.+. ..++.|+.|+++.|.++|.++..+..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFD---RLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTT---TCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHh---CCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 356677777777777777766654321 1236777777777654 23456777777888777777665543
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.9e-23 Score=186.72 Aligned_cols=209 Identities=28% Similarity=0.418 Sum_probs=169.3
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC
Q psy3966 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136 (392)
Q Consensus 57 ~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 136 (392)
++..+++.++.+.... ....+++|+.|++++|.++.++ .+..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-------------------------~l~~l~~L~~L~l~~n 73 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-------------------------GIQYLPNVRYLALGGN 73 (272)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCT-------------------------TGGGCTTCCEEECTTS
T ss_pred HHHHHHhcCccccccc-ccccccceeeeeeCCCCccccc-------------------------ccccCCCCcEEECCCC
Confidence 4555666666666442 3466788888888888776543 3567899999999999
Q ss_pred CCcccCccccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcch-h
Q psy3966 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-S 213 (392)
Q Consensus 137 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~ 213 (392)
.++.++ .+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .++.+++|++|++++|.++.++. .
T Consensus 74 ~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 152 (272)
T 3rfs_A 74 KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152 (272)
T ss_dssp CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH
Confidence 999875 678899999999999999987654 6899999999999999998865 47899999999999999998876 4
Q ss_pred hhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCccccccCccCCC
Q psy3966 214 ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVIRFVSDMTYKP 292 (392)
Q Consensus 214 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 292 (392)
+..+++|+.|++++|.+++++...+. ..++|+.|++++|.++.++.. +..+++|++|++++|++.+. .
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~ 221 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFD---KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------C 221 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------T
T ss_pred hccCccCCEEECCCCCcCccCHHHhc---CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------C
Confidence 68999999999999999988775432 224899999999999987764 67899999999999998764 3
Q ss_pred CCHHHHHHhhh
Q psy3966 293 PSLLELASRTL 303 (392)
Q Consensus 293 ~~l~~L~~~~~ 303 (392)
+.+..+.....
T Consensus 222 ~~l~~l~~~~n 232 (272)
T 3rfs_A 222 PGIRYLSEWIN 232 (272)
T ss_dssp TTTHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 45666654433
No 83
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=3.2e-22 Score=197.64 Aligned_cols=187 Identities=28% Similarity=0.415 Sum_probs=125.6
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC
Q psy3966 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136 (392)
Q Consensus 57 ~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 136 (392)
+|+.|++++|.++.+|..+. ++|++|+|++|.|+.+| ..+++|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---------------------------~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---------------------------ELPASLEYLDACDN 110 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---------------------------CCCTTCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---------------------------cccCCCCEEEccCC
Confidence 56666666666666655442 55666666666665444 22466777777777
Q ss_pred CCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhC
Q psy3966 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISN 216 (392)
Q Consensus 137 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~ 216 (392)
.++.+|. +.. +|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. +.
T Consensus 111 ~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~- 179 (571)
T 3cvr_A 111 RLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP- 179 (571)
T ss_dssp CCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC-
T ss_pred CCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh-
Confidence 7776665 443 67777777777777665 56677777777777777665 45677777777777777766 44
Q ss_pred CcccceeeccCCcCCCCChhhHh-hhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccccc
Q psy3966 217 LKMLKSLLLHNNKLRTLPTEIIT-LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFV 285 (392)
Q Consensus 217 l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~~~ 285 (392)
++|+.|++++|.|+.+|. +.. +....+.|+.|++++|.|+.+|..+..+++|+.|++++|++++..+
T Consensus 180 -~~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 180 -ESLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -TTCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred -CCCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 677777777777777766 221 0001122388888888888888888888888888888888877553
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.7e-23 Score=194.73 Aligned_cols=246 Identities=19% Similarity=0.189 Sum_probs=150.9
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCc--CCcccc-
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITH--LPQAIT- 99 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~--l~~~~~- 99 (392)
.++.+|++++.+....+..... ++++.|++++|.++..+..+..+++|++|++++|.++. ++..+.
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~-----------~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLS-----------QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHH-----------TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred hheeeccccccCCHHHHHhhhh-----------ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh
Confidence 3678888888877543333222 57888899988888666666778889999998888763 555444
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC-CCc--ccCccccCCcCCcEEECCCC-CCCc--CchhhcCCC-
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN-QLE--QFPIQILDIPTLKYLYLGNN-SLNH--VPREINKLC- 172 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~--~l~~~l~~l~~L~~L~l~~n-~l~~--l~~~l~~~~- 172 (392)
+++|++|++++|.+++ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp BCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred CCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 6677777777776654 44555666777777777777 555 24544556677777777777 6663 455566666
Q ss_pred CccEEEccCCC--Cc--ccchhhcCCcCCCEEEccCCC-CC-CcchhhhCCcccceeeccCCcCCCCChhhHhhhccccc
Q psy3966 173 KLHVLSLGGNS--LT--DIPDTFGDLYQLEALILSDNQ-LE-SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEK 246 (392)
Q Consensus 173 ~L~~L~l~~n~--l~--~l~~~l~~l~~L~~L~L~~n~-l~-~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 246 (392)
+|++|++++|. ++ .++..+..+++|++|++++|. ++ ..+..+..+++|++|++++|. ...+..+..+. ..++
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~-~~~~ 273 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-DIIPETLLELG-EIPT 273 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT-TCCGGGGGGGG-GCTT
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHh-cCCC
Confidence 77777777773 32 455556666777777777776 44 444556666777777777764 11111111111 2346
Q ss_pred CcEEEccCCCCCCCCccccCC-CCCCEEeCcCCCCccccc
Q psy3966 247 LKSLLLHNNKLRTLPTEIITL-KCLSELSLRDNPLVIRFV 285 (392)
Q Consensus 247 L~~L~l~~n~l~~l~~~l~~l-~~L~~L~l~~N~l~~~~~ 285 (392)
|+.|++++| ++.- .+..+ ..+..|++++|.+++..+
T Consensus 274 L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 274 LKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CCEEeccCc-cCHH--HHHHHHhhCcceEEecccCccccC
Confidence 777777766 3210 11111 224455566666665543
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.7e-23 Score=198.83 Aligned_cols=253 Identities=20% Similarity=0.204 Sum_probs=193.6
Q ss_pred CccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC----CCCccc-------cCCCCCCEEE
Q psy3966 17 DSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS----FFPDNA-------SKFTNLRSLD 85 (392)
Q Consensus 17 ~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~----~i~~~l-------~~l~~L~~L~ 85 (392)
....+++|++|+|++|.++..........+ ..+++|++|+|++|.+. .+|..+ ..+++|++|+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l------~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENI------ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTT------TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHH------HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 345678999999999999876554433322 45689999999998665 344444 6899999999
Q ss_pred ccCCcCCc-----CCcccc-CccchhhhhhcCCCCCC---CCCccCCCC---------CCCcEEeccCCCCc--ccC---
Q psy3966 86 LSNNRITH-----LPQAIT-NFPLSTLIARNNLLTAE---SLPKDMSNL---------KNLKVFNLSGNQLE--QFP--- 142 (392)
Q Consensus 86 Ls~n~l~~-----l~~~~~-~~~L~~L~l~~n~~~~~---~~~~~~~~l---------~~L~~L~l~~n~l~--~l~--- 142 (392)
|++|.++. ++..+. +++|++|++++|.++.. .++..+..+ ++|++|++++|+++ .++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999985 666666 89999999999998631 223334444 89999999999997 344
Q ss_pred ccccCCcCCcEEECCCCCCC------cCchhhcCCCCccEEEccCCCCc-----ccchhhcCCcCCCEEEccCCCCCC--
Q psy3966 143 IQILDIPTLKYLYLGNNSLN------HVPREINKLCKLHVLSLGGNSLT-----DIPDTFGDLYQLEALILSDNQLES-- 209 (392)
Q Consensus 143 ~~l~~l~~L~~L~l~~n~l~------~l~~~l~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~~-- 209 (392)
..+..+++|++|++++|.++ -++..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 35667899999999999998 23337889999999999999994 578889999999999999999984
Q ss_pred ---cchhhhC--CcccceeeccCCcCCC-----CChhhHhhhcccccCcEEEccCCCCCCCC---ccccC-CCCCCEEeC
Q psy3966 210 ---LPASISN--LKMLKSLLLHNNKLRT-----LPTEIITLKCLSEKLKSLLLHNNKLRTLP---TEIIT-LKCLSELSL 275 (392)
Q Consensus 210 ---l~~~l~~--l~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~~L~~L~l~~n~l~~l~---~~l~~-l~~L~~L~l 275 (392)
++..+.. +++|+.|++++|.++. +|..+.. ..++|+.|++++|.++... ..+.. ++.++.+++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~---~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE---KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH---HCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh---cCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 4566644 8999999999999986 6655522 1259999999999998554 23322 444544444
Q ss_pred cCC
Q psy3966 276 RDN 278 (392)
Q Consensus 276 ~~N 278 (392)
..+
T Consensus 338 ~~~ 340 (386)
T 2ca6_A 338 DEL 340 (386)
T ss_dssp CCC
T ss_pred hhc
Confidence 433
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=6.1e-22 Score=175.35 Aligned_cols=194 Identities=20% Similarity=0.295 Sum_probs=128.2
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCC-CCCCCc-cccCCCCCCEEEccC-CcCCcCCccc
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNN-LSFFPD-NASKFTNLRSLDLSN-NRITHLPQAI 98 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~-l~~i~~-~l~~l~~L~~L~Ls~-n~l~~l~~~~ 98 (392)
+++++|++++|.+++... . .+..+++|++|++++|+ ++.++. .+.++++|++|++++ |.++.++.
T Consensus 31 ~~l~~L~l~~n~l~~i~~---------~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-- 98 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS---------H-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-- 98 (239)
T ss_dssp TTCCEEEEESCCCSEECT---------T-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT--
T ss_pred CcccEEEEeCCcceEECH---------H-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH--
Confidence 479999999999875221 1 12457899999999997 987765 689999999999999 99987764
Q ss_pred cCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCc---EEECCCC-CCCcCchh-hcCCCC
Q psy3966 99 TNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLK---YLYLGNN-SLNHVPRE-INKLCK 173 (392)
Q Consensus 99 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~---~L~l~~n-~l~~l~~~-l~~~~~ 173 (392)
..+.++++|++|++++|.++.+|. +..+++|+ +|++++| .++.++.. +..+++
T Consensus 99 ---------------------~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 99 ---------------------DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp ---------------------TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred ---------------------HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence 234455666666666666665554 44555555 6666666 66655433 556666
Q ss_pred cc-EEEccCCCCcccchhhcCCcCCCEEEccCCC-CCCcch-hhhCC-cccceeeccCCcCCCCChhhHhhhcccccCcE
Q psy3966 174 LH-VLSLGGNSLTDIPDTFGDLYQLEALILSDNQ-LESLPA-SISNL-KMLKSLLLHNNKLRTLPTEIITLKCLSEKLKS 249 (392)
Q Consensus 174 L~-~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~-l~~l~~-~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 249 (392)
|+ +|++++|.++.+|......++|++|++++|+ ++.++. .+..+ ++|+.|++++|+++.+|.. .+ ++|+.
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~----~~L~~ 230 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GL----EHLKE 230 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TC----TTCSE
T ss_pred ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--Hh----ccCce
Confidence 66 6666666666665433333566666666663 665543 45566 6666677776666666654 11 26666
Q ss_pred EEccCC
Q psy3966 250 LLLHNN 255 (392)
Q Consensus 250 L~l~~n 255 (392)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 666654
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=186.41 Aligned_cols=227 Identities=20% Similarity=0.184 Sum_probs=184.0
Q ss_pred ccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCC-CCCccc--cCCCCCCEEEccCCcCCcC
Q psy3966 18 SFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNA--SKFTNLRSLDLSNNRITHL 94 (392)
Q Consensus 18 ~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l--~~l~~L~~L~Ls~n~l~~l 94 (392)
..+...++.+++.++.++...+......+ ..++|++|++++|.++ ..|..+ ..+++|++|++++|.++..
T Consensus 60 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 60 TVKALRVRRLTVGAAQVPAQLLVGALRVL-------AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp GGSSCCCCEEEECSCCCBHHHHHHHHHHH-------HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred HhhhcceeEEEEeCCcCCHHHHHHHHHhc-------ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch
Confidence 34555689999999998876655544332 2357999999999998 566666 8899999999999999853
Q ss_pred Cc-----cc-cCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcc---cCc--cccCCcCCcEEECCCCCCCc
Q psy3966 95 PQ-----AI-TNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ---FPI--QILDIPTLKYLYLGNNSLNH 163 (392)
Q Consensus 95 ~~-----~~-~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~--~l~~l~~L~~L~l~~n~l~~ 163 (392)
.. .+ .+++|++|++++|.+.. ..+..+..+++|++|++++|++.. ++. .+..+++|++|++++|.++.
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 22 11 27899999999999975 667889999999999999999763 332 23578999999999999987
Q ss_pred Cchh----hcCCCCccEEEccCCCCccc-chhhcCC---cCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCCh
Q psy3966 164 VPRE----INKLCKLHVLSLGGNSLTDI-PDTFGDL---YQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235 (392)
Q Consensus 164 l~~~----l~~~~~L~~L~l~~n~l~~l-~~~l~~l---~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~ 235 (392)
++.. +..+++|++|++++|.++.+ |+.+..+ ++|++|++++|+++.+|..+. ++|+.|++++|+++++|.
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch
Confidence 6553 57789999999999999976 7777666 699999999999999988764 799999999999998765
Q ss_pred hhHhhhcccccCcEEEccCCCCCC
Q psy3966 236 EIITLKCLSEKLKSLLLHNNKLRT 259 (392)
Q Consensus 236 ~~~~~~~~~~~L~~L~l~~n~l~~ 259 (392)
... .++|+.|++++|.++.
T Consensus 290 -~~~----l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 -PDE----LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -TTS----CCCCSCEECSSTTTSC
T ss_pred -hhh----CCCccEEECcCCCCCC
Confidence 222 3589999999999863
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.2e-21 Score=193.62 Aligned_cols=187 Identities=26% Similarity=0.368 Sum_probs=150.9
Q ss_pred cccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCcc
Q psy3966 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP 102 (392)
Q Consensus 23 ~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~ 102 (392)
+|++|||++|.+++ ++.. .+++|++|+|++|+++.+| ..+++|++|++++|.++.+|. +.. +
T Consensus 60 ~L~~L~Ls~n~L~~--lp~~-----------l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~-~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSS--LPDN-----------LPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA-S 121 (571)
T ss_dssp TCSEEECCSSCCSC--CCSC-----------CCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT-T
T ss_pred CccEEEeCCCCCCc--cCHh-----------HcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc-C
Confidence 89999999999875 2221 1368999999999999998 557999999999999999987 333 8
Q ss_pred chhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCC
Q psy3966 103 LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGN 182 (392)
Q Consensus 103 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n 182 (392)
|++|++++|.++. +|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|
T Consensus 122 L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 122 LKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp CCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred CCEEECCCCcCCC--CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence 8899999998874 555 57889999999998888876 56788999999998888877 55 78899999999
Q ss_pred CCcccchhhcCCcCC-------CEEEccCCCCCCcchhhhCCcccceeeccCCcCC-CCChhhHhhh
Q psy3966 183 SLTDIPDTFGDLYQL-------EALILSDNQLESLPASISNLKMLKSLLLHNNKLR-TLPTEIITLK 241 (392)
Q Consensus 183 ~l~~l~~~l~~l~~L-------~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~ 241 (392)
.++.+|. +.. +| ++|++++|.|+.+|..+..+++|+.|++++|.++ .+|..+..+.
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 8888877 554 66 8889999988888887777888889999988887 4555555543
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=2.5e-21 Score=181.30 Aligned_cols=234 Identities=23% Similarity=0.288 Sum_probs=187.1
Q ss_pred cEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCC-cCCcccc--C
Q psy3966 25 KTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRIT-HLPQAIT--N 100 (392)
Q Consensus 25 ~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~-~l~~~~~--~ 100 (392)
++++.++++++. +|.. .++++++|+|++|+|+.+|. .|.++++|++|+|++|++. .++...+ +
T Consensus 12 ~~v~C~~~~Lt~--iP~~-----------l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 12 RVFLCQESKVTE--IPSD-----------LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp TEEEEESTTCCS--CCTT-----------CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CEEEecCCCCCc--cCcC-----------cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 678999999874 2322 24689999999999999886 5899999999999999975 5776554 6
Q ss_pred ccchh-hhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCC-CCCCcCchh-hcCC-CCcc
Q psy3966 101 FPLST-LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGN-NSLNHVPRE-INKL-CKLH 175 (392)
Q Consensus 101 ~~L~~-L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~-n~l~~l~~~-l~~~-~~L~ 175 (392)
.++++ +.+..|++.. ..+..+..+++|++|++++|+++.++.. +....++..+++.+ +.+..++.. +..+ ..++
T Consensus 79 ~~l~~~l~~~~N~l~~-l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 79 PKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp TTCCEEEEEEETTCCE-ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred hhhhhhhcccCCcccc-cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 66654 5666788874 4567889999999999999999987654 34567788898865 578877653 4444 4689
Q ss_pred EEEccCCCCcccchhhcCCcCCCEEEcc-CCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEcc
Q psy3966 176 VLSLGGNSLTDIPDTFGDLYQLEALILS-DNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLH 253 (392)
Q Consensus 176 ~L~l~~n~l~~l~~~l~~l~~L~~L~L~-~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 253 (392)
.|++++|+++.++.......+|++++++ +|.++.+|. .+..+++|+.|++++|+|+.+|...+ .+|+.|.+.
T Consensus 158 ~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~------~~L~~L~~l 231 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL------ENLKKLRAR 231 (350)
T ss_dssp EEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC------TTCCEEECT
T ss_pred hhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh------ccchHhhhc
Confidence 9999999999998877777899999997 478999986 57999999999999999999987543 378888876
Q ss_pred CC-CCCCCCccccCCCCCCEEeCcCCC
Q psy3966 254 NN-KLRTLPTEIITLKCLSELSLRDNP 279 (392)
Q Consensus 254 ~n-~l~~l~~~l~~l~~L~~L~l~~N~ 279 (392)
++ .++.+|. +.++++|+.+++.++.
T Consensus 232 ~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 232 STYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp TCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred cCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 65 4678884 7889999999997654
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.3e-20 Score=168.16 Aligned_cols=155 Identities=32% Similarity=0.506 Sum_probs=104.8
Q ss_pred CCccEEEccCCCCCCCCc-cccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc
Q psy3966 56 ENIDTLLLYHNNLSFFPD-NASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 134 (392)
+++++|+|++|.++.++. .+.++++|++|++++|.++.++ +..+..+++|++|+++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------------------~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-----------------------AGVFDDLTELGTLGLA 91 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----------------------TTTTTTCTTCCEEECT
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-----------------------HhHhccCCcCCEEECC
Confidence 456666666666664433 3556666666666666655433 3445667777777777
Q ss_pred CCCCcccCcc-ccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcc
Q psy3966 135 GNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLP 211 (392)
Q Consensus 135 ~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~ 211 (392)
+|+++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .++.+++|++|++++|+++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 7777766543 34577777777777777766554 4667777777777777777655 5677777777777777777665
Q ss_pred h-hhhCCcccceeeccCCcCCCC
Q psy3966 212 A-SISNLKMLKSLLLHNNKLRTL 233 (392)
Q Consensus 212 ~-~l~~l~~L~~L~L~~n~l~~~ 233 (392)
. .+..+++|+.|++++|.+...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 4 567777777777777777643
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=5.6e-21 Score=174.22 Aligned_cols=171 Identities=27% Similarity=0.450 Sum_probs=106.3
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccC
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 135 (392)
++|++|++++|.++.++. +..+++|++|++++|+++.++. +..+++|++|++++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-------------------------l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-------------------------LANLKNLGWLFLDE 99 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-------------------------GTTCTTCCEEECCS
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-------------------------cccCCCCCEEECCC
Confidence 456677777776666643 5666677777777776665432 45556666666666
Q ss_pred CCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhh
Q psy3966 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASIS 215 (392)
Q Consensus 136 n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~ 215 (392)
|.++.++. +..+++|++|++++|.++.+ +.+..+++|++|++++|.++.+ +.+..+++|++|++++|.++.++. +.
T Consensus 100 n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 100 NKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp SCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hc
Confidence 66665542 55566666666666666655 3455666666666666666665 445666666666666666666554 66
Q ss_pred CCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCC
Q psy3966 216 NLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP 261 (392)
Q Consensus 216 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~ 261 (392)
.+++|+.|++++|.++.++. +..+ ++|+.|++++|.++..|
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~-l~~l----~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRA-LAGL----KNLDVLELFSQECLNKP 216 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGG-GTTC----TTCSEEEEEEEEEECCC
T ss_pred CCCccCEEECCCCcCCCChh-hccC----CCCCEEECcCCcccCCc
Confidence 66666666776666666543 2222 36677777776665444
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.6e-22 Score=185.81 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=178.8
Q ss_pred CCccEEEccCCCCCCCCccccCC--CCCCEEEccCCcCCcCCcccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEe
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKF--TNLRSLDLSNNRITHLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l--~~L~~L~Ls~n~l~~l~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 132 (392)
..++.++++++.+. +..+..+ ++++.|++++|.++..+.... +.+|++|++++|.++...++..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 45899999999887 4455666 899999999999986665555 899999999999987644778889999999999
Q ss_pred ccCCCCc-ccCccccCCcCCcEEECCCC-CCC--cCchhhcCCCCccEEEccCC-CCcc--cchhhcCCc-CCCEEEccC
Q psy3966 133 LSGNQLE-QFPIQILDIPTLKYLYLGNN-SLN--HVPREINKLCKLHVLSLGGN-SLTD--IPDTFGDLY-QLEALILSD 204 (392)
Q Consensus 133 l~~n~l~-~l~~~l~~l~~L~~L~l~~n-~l~--~l~~~l~~~~~L~~L~l~~n-~l~~--l~~~l~~l~-~L~~L~L~~ 204 (392)
+++|.++ ..+..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999988 56667778999999999999 687 36777888999999999999 8884 677788899 999999999
Q ss_pred CC--CC--CcchhhhCCcccceeeccCCc-CC-CCChhhHhhhcccccCcEEEccCCC-CC-CCCccccCCCCCCEEeCc
Q psy3966 205 NQ--LE--SLPASISNLKMLKSLLLHNNK-LR-TLPTEIITLKCLSEKLKSLLLHNNK-LR-TLPTEIITLKCLSELSLR 276 (392)
Q Consensus 205 n~--l~--~l~~~l~~l~~L~~L~L~~n~-l~-~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~l~~~l~~l~~L~~L~l~ 276 (392)
|. ++ .++..+..+++|+.|++++|. ++ ..+..+..+ ++|+.|++++|. ++ .....+..+++|++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l----~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC----TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC----CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 94 54 567778889999999999998 65 444444443 599999999996 32 112257789999999999
Q ss_pred CC
Q psy3966 277 DN 278 (392)
Q Consensus 277 ~N 278 (392)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 99
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1e-20 Score=172.53 Aligned_cols=190 Identities=25% Similarity=0.380 Sum_probs=159.6
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCC
Q psy3966 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137 (392)
Q Consensus 58 L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 137 (392)
+..+.+..+.++.+. .+..+++|++|++++|.++.++ .+..+++|++|++++|+
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-------------------------~~~~l~~L~~L~L~~n~ 79 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-------------------------GIQYLPNVTKLFLNGNK 79 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-------------------------TGGGCTTCCEEECCSSC
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-------------------------hHhcCCCCCEEEccCCc
Confidence 344456666665442 2456778888888888776543 25678999999999999
Q ss_pred CcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCC
Q psy3966 138 LEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217 (392)
Q Consensus 138 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l 217 (392)
++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|+++.+ ..+..+
T Consensus 80 l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l 155 (291)
T 1h6t_A 80 LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRL 155 (291)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGC
T ss_pred cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccC
Confidence 998876 8889999999999999998754 899999999999999999884 688999999999999999988 578999
Q ss_pred cccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCCccc
Q psy3966 218 KMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 218 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
++|+.|++++|.+++++. +..+ ++|+.|++++|.++.++. +..+++|+.|++++|+++..
T Consensus 156 ~~L~~L~L~~N~l~~~~~-l~~l----~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP-LAGL----TKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TTCSEEECCSSCCCCCGG-GTTC----TTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred CCCCEEEccCCccccchh-hcCC----CccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 999999999999998876 3333 599999999999999875 88899999999999998753
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=4.1e-20 Score=164.85 Aligned_cols=133 Identities=32% Similarity=0.513 Sum_probs=78.8
Q ss_pred CCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCCCCcchh-hhCCccccee
Q psy3966 147 DIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPAS-ISNLKMLKSL 223 (392)
Q Consensus 147 ~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L 223 (392)
.+++|++|++++|.++.++. .+..+++|++|++++|.++.++ ..+..+++|++|++++|+++.++.. +..+++|+.|
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence 34444444444444443322 2444455555555555555443 2345566666666666666655543 4566666666
Q ss_pred eccCCcCCCCChh-hHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCccc
Q psy3966 224 LLHNNKLRTLPTE-IITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 224 ~L~~n~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~ 283 (392)
++++|.++.++.. +..+ ++|+.|++++|.++.++. .+..+++|++|++++|++.+.
T Consensus 137 ~Ls~N~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKL----TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCCCCCTTTTTTC----TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECcCCcCCccCHHHcCcC----cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666666666553 2222 367777777777776655 566788899999999988754
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=5.9e-22 Score=186.45 Aligned_cols=232 Identities=22% Similarity=0.273 Sum_probs=173.4
Q ss_pred cccccEEEeecCCCCchhhHhhhhcccCCcCCCCCC-CccEEEccCCCCCCC-CccccCC-----CCCCEEEccCCcCCc
Q psy3966 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPE-NIDTLLLYHNNLSFF-PDNASKF-----TNLRSLDLSNNRITH 93 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~-~L~~L~L~~n~l~~i-~~~l~~l-----~~L~~L~Ls~n~l~~ 93 (392)
.++|++|||++|.+++.........+ ..++ +|++|+|++|.++.. +..+..+ ++|++|++++|.++.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l------~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAF------ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHH------HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred CCCceEEEccCCCCChHHHHHHHHHH------HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 34599999999999876654433332 2345 899999999999854 4445443 999999999999986
Q ss_pred CCcc-----cc-C-ccchhhhhhcCCCCCCCCCcc----CCC-CCCCcEEeccCCCCc-----ccCccccCCc-CCcEEE
Q psy3966 94 LPQA-----IT-N-FPLSTLIARNNLLTAESLPKD----MSN-LKNLKVFNLSGNQLE-----QFPIQILDIP-TLKYLY 155 (392)
Q Consensus 94 l~~~-----~~-~-~~L~~L~l~~n~~~~~~~~~~----~~~-l~~L~~L~l~~n~l~-----~l~~~l~~l~-~L~~L~ 155 (392)
.+.. +. . .+|++|++++|.++.. .+.. +.. .++|++|++++|.++ .++..+...+ +|++|+
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 5543 22 3 7999999999999763 2222 444 369999999999998 3344445555 999999
Q ss_pred CCCCCCCcCc-----hhhcCC-CCccEEEccCCCCcc-----cchhhcC-CcCCCEEEccCCCCCCcc-----hhhhCCc
Q psy3966 156 LGNNSLNHVP-----REINKL-CKLHVLSLGGNSLTD-----IPDTFGD-LYQLEALILSDNQLESLP-----ASISNLK 218 (392)
Q Consensus 156 l~~n~l~~l~-----~~l~~~-~~L~~L~l~~n~l~~-----l~~~l~~-l~~L~~L~L~~n~l~~l~-----~~l~~l~ 218 (392)
+++|.++... ..+..+ ++|++|++++|.++. ++..+.. .++|++|++++|.++..+ ..+..++
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 9999998543 245566 599999999999996 6666766 459999999999998654 2357789
Q ss_pred ccceeeccCCcCCCCChh-hHhh---hcccccCcEEEccCCCCCC
Q psy3966 219 MLKSLLLHNNKLRTLPTE-IITL---KCLSEKLKSLLLHNNKLRT 259 (392)
Q Consensus 219 ~L~~L~L~~n~l~~~~~~-~~~~---~~~~~~L~~L~l~~n~l~~ 259 (392)
+|+.|++++|.+..+... +..+ ....++|+.|++++|.+..
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 999999999997766544 2211 1233578999999999873
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=3.3e-20 Score=185.03 Aligned_cols=195 Identities=25% Similarity=0.389 Sum_probs=145.5
Q ss_pred cccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccC
Q psy3966 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITN 100 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~ 100 (392)
+..+..++++.+.+.+.... ..+++|+.|++++|.+..++ .+..+++|++|+|++|.++.++....+
T Consensus 20 l~~l~~l~l~~~~i~~~~~~------------~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l 86 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ------------NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNL 86 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH------------HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGC
T ss_pred HHHHHHHhccCCCcccccch------------hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChhhccC
Confidence 34455556666665442111 12357888888888887775 477788888888888888877763337
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEcc
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLG 180 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~ 180 (392)
.+|+.|++++|.+.. + ..+..+++|++|++++|.++.++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|+
T Consensus 87 ~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD--L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TTCCEEECCSSCCCC--C-TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECC
T ss_pred CCCCEEECcCCCCCC--C-hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECc
Confidence 778888888887764 2 36778888888888888888764 567788888888888888877 567888888888888
Q ss_pred CCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCCh
Q psy3966 181 GNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235 (392)
Q Consensus 181 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~ 235 (392)
+|.+..+++ +..+++|++|+|++|.++.++ .+..+++|+.|+|++|.+...|.
T Consensus 162 ~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 162 DNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred CCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 888887765 788888888888888888774 57788888888888888775543
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=1.8e-20 Score=168.24 Aligned_cols=168 Identities=22% Similarity=0.282 Sum_probs=90.7
Q ss_pred ccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCC
Q psy3966 58 IDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137 (392)
Q Consensus 58 L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 137 (392)
++.++++++.++.++ .+..+++|++|++++|.++.++....+.+|++|++++|.++. ++. +..+++|++|++++|+
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCc
Confidence 334444444444433 234444444444444444433311112222222222222221 122 5566677777777777
Q ss_pred CcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCC
Q psy3966 138 LEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217 (392)
Q Consensus 138 l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l 217 (392)
++.++.... ++|++|++++|.++.++ .+..+++|++|++++|+++.++ .+..+++|++|++++|.++.+ ..+..+
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l 171 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRL 171 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccC
Confidence 666554322 66777777777666653 4666666777777776666664 466666666666666666655 445666
Q ss_pred cccceeeccCCcCCCCC
Q psy3966 218 KMLKSLLLHNNKLRTLP 234 (392)
Q Consensus 218 ~~L~~L~L~~n~l~~~~ 234 (392)
++|+.|++++|.++..|
T Consensus 172 ~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCCEEEEEEEEEECCC
T ss_pred CCCCEEeCCCCcccCCc
Confidence 66666666666665444
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.3e-19 Score=180.86 Aligned_cols=191 Identities=24% Similarity=0.339 Sum_probs=115.6
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC
Q psy3966 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136 (392)
Q Consensus 57 ~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 136 (392)
.+..+++..+.+..+.. +..+++|+.|++++|.+..++....+.+|+.|++++|.+.. ++. +..+++|+.|+|++|
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSS
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCC
Confidence 45556677777765533 46778888888888888877643336666666666666653 222 556666666666666
Q ss_pred CCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhC
Q psy3966 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISN 216 (392)
Q Consensus 137 ~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~ 216 (392)
.++.++ .+..+++|++|++++|.+..+ +.+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.++.++. +..
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~ 173 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAG 173 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hcc
Confidence 666554 455566666666666666655 3455566666666666666655 345566666666666666665544 556
Q ss_pred CcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCC
Q psy3966 217 LKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL 260 (392)
Q Consensus 217 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l 260 (392)
+++|+.|+|++|.++.++. +..+ ++|+.|++++|.++..
T Consensus 174 l~~L~~L~Ls~N~i~~l~~-l~~l----~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDLRA-LAGL----KNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCCEEECCSSCCCBCGG-GTTC----TTCSEEECCSEEEECC
T ss_pred CCCCCEEECcCCCCCCChH-HccC----CCCCEEEccCCcCcCC
Confidence 6666666666666655532 2222 3566666666655443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.6e-19 Score=153.96 Aligned_cols=175 Identities=29% Similarity=0.442 Sum_probs=98.4
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCC
Q psy3966 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138 (392)
Q Consensus 59 ~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 138 (392)
+.++.+++.++.+|..+ .++|++|++++|.++.++. ..+..+++|++|++++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l 64 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPN-----------------------GVFDELTSLTQLYLGGNKL 64 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCT-----------------------TTTTTCTTCSEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCCh-----------------------hhhcccccCcEEECCCCcc
Confidence 34555555555555433 2456666666665554332 2344556666666666666
Q ss_pred cccCccc-cCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcchh-h
Q psy3966 139 EQFPIQI-LDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPAS-I 214 (392)
Q Consensus 139 ~~l~~~l-~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~-l 214 (392)
+.++... ..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++++|+++.++.. +
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 6554432 3456666666666666655433 4556666666666666665543 355666666666666666655543 5
Q ss_pred hCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCC-CCCccccCCC
Q psy3966 215 SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLK 268 (392)
Q Consensus 215 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~ 268 (392)
..+++|+.|++++|.+..- +++|+.|+++.|.++ .+|.+++.++
T Consensus 145 ~~l~~L~~L~l~~N~~~~~----------~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDCT----------CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTCTTCCEEECCSCCBCCC----------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ccCCCccEEEecCCCeecC----------CCCHHHHHHHHHhCCceeeccCcccc
Confidence 5666666666666655421 124555566666655 5555555443
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=1.2e-19 Score=162.88 Aligned_cols=170 Identities=25% Similarity=0.295 Sum_probs=141.7
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEc
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSL 179 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l 179 (392)
+.++..++++++.++. ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 5567777888887764 33 5677889999999999998887 67788999999999999998876 889999999999
Q ss_pred cCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCC
Q psy3966 180 GGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRT 259 (392)
Q Consensus 180 ~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 259 (392)
++|+++.++... . ++|++|++++|+++.++ .+..+++|+.|++++|++++++ .+..+ ++|+.|++++|.++.
T Consensus 93 ~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l----~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKNLNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFL----SKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSCCTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGC----TTCCEEECTTSCCCB
T ss_pred CCCccCCcCccc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccC----CCCCEEECCCCcCcc
Confidence 999999887533 3 89999999999999875 5888999999999999999875 33333 489999999999988
Q ss_pred CCccccCCCCCCEEeCcCCCCccc
Q psy3966 260 LPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 260 l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
+ ..+..+++|+.|++++|+++..
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHhccCCCCCEEeCCCCcccCC
Confidence 7 6688899999999999988754
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.9e-19 Score=167.28 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=172.1
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc--CccchhhhhhcCCCCCCCCCccCCCCCCCcE-EeccC
Q psy3966 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLKV-FNLSG 135 (392)
Q Consensus 59 ~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~l~~ 135 (392)
++++.++++++++|..+ .+++++|+|++|+|+.+|...+ +.+|++|++++|.+....-+.+|.+++++++ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 57889999999999877 3689999999999999997643 8999999999999865233456788988776 66677
Q ss_pred CCCcccCc-cccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccC-CCCcccch-hhcCCc-CCCEEEccCCCCCCc
Q psy3966 136 NQLEQFPI-QILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGG-NSLTDIPD-TFGDLY-QLEALILSDNQLESL 210 (392)
Q Consensus 136 n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~-n~l~~l~~-~l~~l~-~L~~L~L~~n~l~~l 210 (392)
|+++.++. .+..+++|++|++++|.+..++.. +....++..+++.+ +.+..++. .+..+. .++.|++++|+|+.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 99998854 566799999999999999987653 45566788898865 67887764 455554 689999999999999
Q ss_pred chhhhCCcccceeeccC-CcCCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCCC
Q psy3966 211 PASISNLKMLKSLLLHN-NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 211 ~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~l 280 (392)
+.......+|+.+++++ |.++.+|...+. ..++|+.|++++|+|+.+|... +.+|+.|.+.++.-
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~---~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFH---GASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYN 235 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTT---TEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhc---cCcccchhhcCCCCcCccChhh--hccchHhhhccCCC
Confidence 88777778999999975 788899986543 2259999999999999998743 55677777766643
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=5.7e-19 Score=151.44 Aligned_cols=152 Identities=20% Similarity=0.222 Sum_probs=130.3
Q ss_pred CCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcc-cchhhcCCcCCCEEE
Q psy3966 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD-IPDTFGDLYQLEALI 201 (392)
Q Consensus 123 ~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~ 201 (392)
..+++|++|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 56789999999999999888 6888999999999999887764 78889999999999999985 577889999999999
Q ss_pred ccCCCCCC-cchhhhCCcccceeeccCCc-CCCCChhhHhhhcccccCcEEEccCCCCCCCCccccCCCCCCEEeCcCCC
Q psy3966 202 LSDNQLES-LPASISNLKMLKSLLLHNNK-LRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279 (392)
Q Consensus 202 L~~n~l~~-l~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~N~ 279 (392)
+++|.++. .+..+..+++|++|++++|. ++.++ .+..+ ++|+.|++++|.++.++ .+..+++|++|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l----~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL----PELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGC----SSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCC----CCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 99999994 66788999999999999998 88876 34433 48999999999999887 78889999999999999
Q ss_pred Ccc
Q psy3966 280 LVI 282 (392)
Q Consensus 280 l~~ 282 (392)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 753
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=3.4e-19 Score=152.87 Aligned_cols=149 Identities=19% Similarity=0.295 Sum_probs=108.7
Q ss_pred CCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccC
Q psy3966 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 135 (392)
++|++|++++|.++.++ .+..+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~-------------------------~~l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY-------------------------NPISGLSNLERLRIMG 97 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC-------------------------GGGTTCTTCCEEEEEC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc-------------------------hhhhcCCCCCEEEeEC
Confidence 45556666666665555 455556666666666544322 3566778888888888
Q ss_pred CCCcc-cCccccCCcCCcEEECCCCCCCc-CchhhcCCCCccEEEccCCC-CcccchhhcCCcCCCEEEccCCCCCCcch
Q psy3966 136 NQLEQ-FPIQILDIPTLKYLYLGNNSLNH-VPREINKLCKLHVLSLGGNS-LTDIPDTFGDLYQLEALILSDNQLESLPA 212 (392)
Q Consensus 136 n~l~~-l~~~l~~l~~L~~L~l~~n~l~~-l~~~l~~~~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~L~~n~l~~l~~ 212 (392)
|.++. .+..+..+++|++|++++|.++. .+..+..+++|++|++++|. ++.++ .+..+++|++|++++|.++.++
T Consensus 98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-
T ss_pred CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-
Confidence 88874 56677778888888888888884 56778888888889988887 77776 5788888999999999888876
Q ss_pred hhhCCcccceeeccCCcCCC
Q psy3966 213 SISNLKMLKSLLLHNNKLRT 232 (392)
Q Consensus 213 ~l~~l~~L~~L~L~~n~l~~ 232 (392)
.+..+++|+.|++++|++..
T Consensus 176 ~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TGGGCSSCCEEEECBC----
T ss_pred HhccCCCCCEEEeeCcccCC
Confidence 67888889999999988753
No 104
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=3.3e-21 Score=191.08 Aligned_cols=120 Identities=28% Similarity=0.354 Sum_probs=70.6
Q ss_pred CCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCc
Q psy3966 150 TLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNK 229 (392)
Q Consensus 150 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~ 229 (392)
.|+.|++++|.++.+|. +..+++|++|++++|.++.+|..++.+++|++|+|++|.++.+| .+..+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 35566666666666654 55666666666666666666666666666666666666666655 55666666666666666
Q ss_pred CCCC--ChhhHhhhcccccCcEEEccCCCCCCCCcccc----CCCCCCEEeC
Q psy3966 230 LRTL--PTEIITLKCLSEKLKSLLLHNNKLRTLPTEII----TLKCLSELSL 275 (392)
Q Consensus 230 l~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~----~l~~L~~L~l 275 (392)
++++ |..+..+. +|+.|++++|.++.+|+... .+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~----~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCP----RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCT----TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCC----CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6655 44444433 56666666666655544322 2566666653
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.7e-18 Score=149.92 Aligned_cols=150 Identities=32% Similarity=0.458 Sum_probs=131.8
Q ss_pred CcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCC
Q psy3966 128 LKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDN 205 (392)
Q Consensus 128 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n 205 (392)
.+.++.++++++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5679999999999987664 7899999999999977 5678899999999999999998874 5689999999999999
Q ss_pred CCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCccc
Q psy3966 206 QLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 206 ~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~ 283 (392)
+++.++. .+..+++|+.|++++|.++.+|..+..+. +|+.|++++|.++.+|. .+..+++|+.|++++|++.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT----HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCT----TCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCC----CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9998876 46889999999999999999998876554 89999999999998875 477799999999999998764
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.8e-21 Score=192.94 Aligned_cols=104 Identities=30% Similarity=0.436 Sum_probs=65.5
Q ss_pred CccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEc
Q psy3966 173 KLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLL 252 (392)
Q Consensus 173 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 252 (392)
.|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..+..+++|+.|++++|.++++| .+..+ ++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l----~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANL----PRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTC----SSCCEEEC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCC----CCCcEEEC
Confidence 36666666666666655 66666666666666666666666666666666666666666655 33333 36666666
Q ss_pred cCCCCCCC--CccccCCCCCCEEeCcCCCCcc
Q psy3966 253 HNNKLRTL--PTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 253 ~~n~l~~l--~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
++|.|+.+ |..+..+++|+.|++++|++++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 66666655 5666666666666666666654
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=163.31 Aligned_cols=176 Identities=28% Similarity=0.449 Sum_probs=126.0
Q ss_pred CEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcccc--CCcCCcEEECCCC
Q psy3966 82 RSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL--DIPTLKYLYLGNN 159 (392)
Q Consensus 82 ~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~--~l~~L~~L~l~~n 159 (392)
++++++++.++.+|..+ + +.++.|++++|+++.++.... .+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--------------------~------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N 74 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--------------------P------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74 (361)
T ss_dssp TEEECCSSCCSSCCSSC--------------------C------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--------------------C------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC
Confidence 57888888888776421 1 346777888887776655433 6778888888888
Q ss_pred CCCcCch-hhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCCcCCCCChh
Q psy3966 160 SLNHVPR-EINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTE 236 (392)
Q Consensus 160 ~l~~l~~-~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~~~~~ 236 (392)
.++.++. .+..+++|++|++++|+++.++. .|..+++|++|+|++|+|+.+ +..+..+++|+.|+|++|.++.+|..
T Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 8776653 47777888888888888887654 577788888888888888866 34677888888888888888887776
Q ss_pred hHhhhcccccCcEEEccCCCCCCCCc-cccCCCC--CCEEeCcCCCCccc
Q psy3966 237 IITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKC--LSELSLRDNPLVIR 283 (392)
Q Consensus 237 ~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~--L~~L~l~~N~l~~~ 283 (392)
.+......++|+.|++++|.|+.+|. .+..++. ++.|++++|++...
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 54211123478888888888887774 4555665 47899999988643
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.8e-18 Score=148.87 Aligned_cols=150 Identities=27% Similarity=0.490 Sum_probs=128.6
Q ss_pred cEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCC
Q psy3966 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQ 206 (392)
Q Consensus 129 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~ 206 (392)
+.++++++.++.+|..+. +++++|++++|.++.++. .+..+++|++|++++|.++.+ |..|..+++|++|++++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678999999998887664 689999999999998765 688899999999999999977 6789999999999999999
Q ss_pred CCCcchh-hhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCccc
Q psy3966 207 LESLPAS-ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 207 l~~l~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~~~ 283 (392)
++.+|.. +..+++|+.|++++|.++.+++..+. ..++|+.|++++|.++.++. .+..+++|++|++++|++...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ---DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC---CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9988874 68899999999999999987654332 22489999999999998876 477799999999999998753
No 109
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=1.4e-20 Score=188.54 Aligned_cols=252 Identities=18% Similarity=0.177 Sum_probs=119.3
Q ss_pred ccccccEEEeecCCCCchh---hHhhhhcccCCcCCCCCCCccEEEccCCCCCC-----CCccccCCCCCCEEEccCCcC
Q psy3966 20 KTVSIKTLDFSYSSLDSET---LATQIELLPNNDYNKKPENIDTLLLYHNNLSF-----FPDNASKFTNLRSLDLSNNRI 91 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~---~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~Ls~n~l 91 (392)
.+++|++|+|++|.+++.+ +..... .+++|++|++++|.++. ++..+.++++|++|++++|.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~---------~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQ---------HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHH---------HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHh---------cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 5667777777777664432 222222 23566666666666642 222334566666666666655
Q ss_pred CcCCcccc-CccchhhhhhcCC-------------------------CCCCCCCccCCCCCCCcEEeccCCCCc--ccCc
Q psy3966 92 THLPQAIT-NFPLSTLIARNNL-------------------------LTAESLPKDMSNLKNLKVFNLSGNQLE--QFPI 143 (392)
Q Consensus 92 ~~l~~~~~-~~~L~~L~l~~n~-------------------------~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~ 143 (392)
..++..+. +++|++|.++... .....++..+..+++|++|++++|.++ .+..
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 54443333 4444444443211 111234445555666777777776654 1222
Q ss_pred cccCCcCCcEEECCCCCCC--cCchhhcCCCCccEEEcc------------------------------------CCCCc
Q psy3966 144 QILDIPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLG------------------------------------GNSLT 185 (392)
Q Consensus 144 ~l~~l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~------------------------------------~n~l~ 185 (392)
.+..+++|++|+++ +.+. .++.....+++|++|+++ .|.++
T Consensus 313 ~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 313 LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc
Confidence 23445555555555 2222 122222334445555554 44433
Q ss_pred c-cchhhcC-CcCCCEEEcc----CCCCCCcc------hhhhCCcccceeeccCCc--CCCCChhhHhhhcccccCcEEE
Q psy3966 186 D-IPDTFGD-LYQLEALILS----DNQLESLP------ASISNLKMLKSLLLHNNK--LRTLPTEIITLKCLSEKLKSLL 251 (392)
Q Consensus 186 ~-l~~~l~~-l~~L~~L~L~----~n~l~~l~------~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~L~~L~ 251 (392)
. .+..++. +++|++|+++ .|.++..| ..+..+++|+.|+++.|. ++.. .+..+....++|+.|+
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~--~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL--GLSYIGQYSPNVRWML 469 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH--HHHHHHHSCTTCCEEE
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH--HHHHHHHhCccceEee
Confidence 1 1122222 4445555553 33444321 123444555555554322 2210 0111111234677777
Q ss_pred ccCCCCC--CCCccccCCCCCCEEeCcCCCCccc
Q psy3966 252 LHNNKLR--TLPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 252 l~~n~l~--~l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
+++|.++ .++..+..+++|++|++++|++++.
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 7777665 3444455667777777777776543
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=5e-18 Score=148.13 Aligned_cols=150 Identities=27% Similarity=0.424 Sum_probs=127.9
Q ss_pred CcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCc--hhhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccC
Q psy3966 128 LKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP--REINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSD 204 (392)
Q Consensus 128 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~ 204 (392)
-+++++++|.++.+|..+. ..+++|++++|.++.++ ..+..+++|++|++++|.++.++. .|..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3589999999999887664 45689999999999773 347889999999999999998865 789999999999999
Q ss_pred CCCCCcch-hhhCCcccceeeccCCcCCCCChh-hHhhhcccccCcEEEccCCCCCCC-CccccCCCCCCEEeCcCCCCc
Q psy3966 205 NQLESLPA-SISNLKMLKSLLLHNNKLRTLPTE-IITLKCLSEKLKSLLLHNNKLRTL-PTEIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 205 n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~ 281 (392)
|.++.++. .+..+++|++|++++|.++.+++. +..+ ++|+.|++++|.++.+ |..+..+++|++|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL----SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC----TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC----ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99998776 588999999999999999977543 3333 4899999999999987 677888999999999999997
Q ss_pred cc
Q psy3966 282 IR 283 (392)
Q Consensus 282 ~~ 283 (392)
+.
T Consensus 167 c~ 168 (220)
T 2v70_A 167 CN 168 (220)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.9e-18 Score=147.81 Aligned_cols=152 Identities=31% Similarity=0.411 Sum_probs=118.9
Q ss_pred CccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCC
Q psy3966 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136 (392)
Q Consensus 57 ~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 136 (392)
.-+.++.+++.++.+|..+. ++|++|++++|.++.++ +..+..+++|++|++++|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~-----------------------~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLE-----------------------PGVFDSLINLKELYLGSN 74 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCC-----------------------TTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccC-----------------------HHHhhCccCCcEEECCCC
Confidence 35667777777777776553 67778888777777543 456677888888888888
Q ss_pred CCcccCcc-ccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcch-h
Q psy3966 137 QLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA-S 213 (392)
Q Consensus 137 ~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~ 213 (392)
+++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.++.+|..+..+++|++|++++|+++.++. .
T Consensus 75 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 75 QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 88877755 45688888888888888877654 577888888888888888888888888888888888888887775 5
Q ss_pred hhCCcccceeeccCCcCCCC
Q psy3966 214 ISNLKMLKSLLLHNNKLRTL 233 (392)
Q Consensus 214 l~~l~~L~~L~L~~n~l~~~ 233 (392)
+..+++|+.|++++|.+..-
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTT
T ss_pred HhCCCCCCEEEeeCCCccCC
Confidence 77888888888888888743
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=8.4e-18 Score=146.69 Aligned_cols=147 Identities=27% Similarity=0.436 Sum_probs=87.8
Q ss_pred EEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc
Q psy3966 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139 (392)
Q Consensus 60 ~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 139 (392)
.++++++.++.+|..+. ++|++|++++|.++.++. ..+..+++|++|++++|.++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~-----------------------~~~~~l~~L~~L~Ls~N~i~ 69 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPP-----------------------GAFSPYKKLRRIDLSNNQIS 69 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECT-----------------------TSSTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCH-----------------------hHhhCCCCCCEEECCCCcCC
Confidence 45555555555555443 456666666666554432 23455566666666666666
Q ss_pred cc-CccccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCcch-hhh
Q psy3966 140 QF-PIQILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPA-SIS 215 (392)
Q Consensus 140 ~l-~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~ 215 (392)
.+ |..+.++++|++|++++|.++.+|.. +..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+.
T Consensus 70 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 70 ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 44 44455566666666666666655543 45566666666666666655 3456666677777777777666554 366
Q ss_pred CCcccceeeccCCcCC
Q psy3966 216 NLKMLKSLLLHNNKLR 231 (392)
Q Consensus 216 ~l~~L~~L~L~~n~l~ 231 (392)
.+++|+.|++++|.+.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 6667777777777664
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.9e-18 Score=161.08 Aligned_cols=171 Identities=31% Similarity=0.424 Sum_probs=117.7
Q ss_pred cEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCcc-cc-CCCCCCEEEccCCcCCcCCccccCcc
Q psy3966 25 KTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDN-AS-KFTNLRSLDLSNNRITHLPQAITNFP 102 (392)
Q Consensus 25 ~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~-~l~~L~~L~Ls~n~l~~l~~~~~~~~ 102 (392)
+.++++++.++. ++.. .+..++.|+|++|+++.++.. +. ++++|++|+|++|+|+.++.
T Consensus 21 ~~l~c~~~~l~~--iP~~-----------~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~------ 81 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQS-----------LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS------ 81 (361)
T ss_dssp TEEECCSSCCSS--CCSS-----------CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT------
T ss_pred CEEEeCCCCcCc--cCcc-----------CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh------
Confidence 577787777654 2211 234577788888877765543 44 67777888887777775542
Q ss_pred chhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEcc
Q psy3966 103 LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLG 180 (392)
Q Consensus 103 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~ 180 (392)
..+..+++|++|++++|+++.++.. +..+++|++|++++|.+..+ +..+..+++|++|+++
T Consensus 82 -----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 82 -----------------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----------------hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECC
Confidence 3466777788888888877766553 45677888888888877765 4567777788888888
Q ss_pred CCCCcccchhh----cCCcCCCEEEccCCCCCCcch-hhhCCcc--cceeeccCCcCC
Q psy3966 181 GNSLTDIPDTF----GDLYQLEALILSDNQLESLPA-SISNLKM--LKSLLLHNNKLR 231 (392)
Q Consensus 181 ~n~l~~l~~~l----~~l~~L~~L~L~~n~l~~l~~-~l~~l~~--L~~L~L~~n~l~ 231 (392)
+|.++.+|..+ ..+++|++|+|++|+|+.+|. .+..++. ++.|++++|.+.
T Consensus 145 ~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 88887776543 457788888888888887764 4666665 377888888775
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=6.4e-18 Score=147.46 Aligned_cols=149 Identities=26% Similarity=0.340 Sum_probs=112.9
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCC
Q psy3966 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138 (392)
Q Consensus 59 ~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 138 (392)
+++++++|.++.+|..+. +.+++|++++|.++.++. +..+..+++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~----------------------~~~~~~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEA----------------------TGIFKKLPQLRKINFSNNKI 69 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECC----------------------CCCGGGCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCc----------------------hhhhccCCCCCEEECCCCcC
Confidence 578888888887776553 456788888887775531 23456778888888888888
Q ss_pred cccCc-cccCCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCc-chhh
Q psy3966 139 EQFPI-QILDIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESL-PASI 214 (392)
Q Consensus 139 ~~l~~-~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l 214 (392)
+.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+ |..+
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 87655 56678888888888888887654 377788888888888888876 56778888888888888888866 5577
Q ss_pred hCCcccceeeccCCcCC
Q psy3966 215 SNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 215 ~~l~~L~~L~L~~n~l~ 231 (392)
..+++|+.|++++|.+.
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 88888888888888876
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=6.5e-17 Score=139.73 Aligned_cols=161 Identities=34% Similarity=0.483 Sum_probs=117.0
Q ss_pred cEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCC
Q psy3966 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQ 206 (392)
Q Consensus 129 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~ 206 (392)
+.++.+++.++.+|..+ .+++++|++++|.++.++.. +..+++|++|++++|+++.++. .+..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777554 35788888888888776553 5677888888888888887754 45778888888888888
Q ss_pred CCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCcccc
Q psy3966 207 LESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVIRF 284 (392)
Q Consensus 207 l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~~ 284 (392)
++.++. .+..+++|++|++++|.++.++...+. ..++|+.|++++|.++.++.. +..+++|++|++++|++.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~- 163 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD---KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT- 163 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc---cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-
Confidence 887765 367788888888888888877665322 124788888888888877665 56688888888888877653
Q ss_pred ccCccCCCCCHHHHHHhh
Q psy3966 285 VSDMTYKPPSLLELASRT 302 (392)
Q Consensus 285 ~~~~~~~~~~l~~L~~~~ 302 (392)
.+.+..|....
T Consensus 164 -------~~~l~~L~~~~ 174 (208)
T 2o6s_A 164 -------CPGIRYLSEWI 174 (208)
T ss_dssp -------TTTTHHHHHHH
T ss_pred -------CCCHHHHHHHH
Confidence 34566665433
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=3.1e-19 Score=178.68 Aligned_cols=197 Identities=18% Similarity=0.139 Sum_probs=125.0
Q ss_pred cccEEEeecCC-CCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCC-----CCccccCCCCCCEEEccCCcCCcC--
Q psy3966 23 SIKTLDFSYSS-LDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSF-----FPDNASKFTNLRSLDLSNNRITHL-- 94 (392)
Q Consensus 23 ~L~~LdLs~n~-l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~Ls~n~l~~l-- 94 (392)
+|++|+|++|. ++...+...+. .+++|++|+|++|.++. ++.....+++|++|++++|.++.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~---------~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVT---------HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHH---------HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred cCcEEECcCCCCcCHHHHHHHHh---------hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 49999999987 43333443332 36899999999998763 333457789999999999998733
Q ss_pred ---Ccccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEecc---------------------------CCCCcccCc
Q psy3966 95 ---PQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS---------------------------GNQLEQFPI 143 (392)
Q Consensus 95 ---~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~---------------------------~n~l~~l~~ 143 (392)
+..+. +++|++|++++|.+.+ ++..+..+++|++|+++ ++....++.
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~ 287 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG
T ss_pred HHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH
Confidence 33344 8899999999988763 44455555555555554 333334444
Q ss_pred cccCCcCCcEEECCCCCCCc--CchhhcCCCCccEEEccCCCCc--ccchhhcCCcCCCEEEcc-----------CCCCC
Q psy3966 144 QILDIPTLKYLYLGNNSLNH--VPREINKLCKLHVLSLGGNSLT--DIPDTFGDLYQLEALILS-----------DNQLE 208 (392)
Q Consensus 144 ~l~~l~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~L~-----------~n~l~ 208 (392)
.+..+++|++|++++|.++. ++..+..+++|++|+++ +.+. .++.....+++|++|+++ .+.++
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 44556677777777776552 22335667777777776 3333 233333556677777777 24554
Q ss_pred --CcchhhhCCcccceeeccCCcCC
Q psy3966 209 --SLPASISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 209 --~l~~~l~~l~~L~~L~L~~n~l~ 231 (392)
.++.....+++|++|+++.|.++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCC
T ss_pred HHHHHHHHhhCccCeEEEeecCCcc
Confidence 22223344666666666666555
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=4.7e-18 Score=173.50 Aligned_cols=154 Identities=23% Similarity=0.331 Sum_probs=75.7
Q ss_pred CCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEE
Q psy3966 122 MSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALI 201 (392)
Q Consensus 122 ~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~ 201 (392)
+..+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|..|+.+++|++|+
T Consensus 243 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 243 IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 33566677777777777666666666777777777777777666666667777777777777776666666777777777
Q ss_pred ccCCCCCC-cchhhhCCc-ccceeeccCCcCCC-CChhhHhhhcccccCcEEEccCCC-----CCCCC----ccccCCCC
Q psy3966 202 LSDNQLES-LPASISNLK-MLKSLLLHNNKLRT-LPTEIITLKCLSEKLKSLLLHNNK-----LRTLP----TEIITLKC 269 (392)
Q Consensus 202 L~~n~l~~-l~~~l~~l~-~L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~l~~n~-----l~~l~----~~l~~l~~ 269 (392)
|++|.++. +|..+..+. .+..+++++|.++. +| ..|+.|+++.|. +..++ ..+..+..
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p----------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~ 392 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP----------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAK 392 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CC--------------------------------
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc----------cccceeEeecccccccccCCccccccchhhcccc
Confidence 77777663 333333221 12235666666652 22 256666676661 11222 23344566
Q ss_pred CCEEeCcCCCCccccc
Q psy3966 270 LSELSLRDNPLVIRFV 285 (392)
Q Consensus 270 L~~L~l~~N~l~~~~~ 285 (392)
+....+++|.+.+.+.
T Consensus 393 ~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 393 RTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ---------CCCGGGC
T ss_pred cceeeeeccccccccC
Confidence 6777788887764443
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=4.2e-17 Score=135.95 Aligned_cols=134 Identities=26% Similarity=0.329 Sum_probs=85.2
Q ss_pred CCCCccEEEccCCCCC--CCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEE
Q psy3966 54 KPENIDTLLLYHNNLS--FFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVF 131 (392)
Q Consensus 54 ~~~~L~~L~L~~n~l~--~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 131 (392)
.+++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L 76 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-------------------------SNLPKLPKLKKL 76 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-------------------------SSCCCCSSCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-------------------------hhhccCCCCCEE
Confidence 3467777888777777 6777667777777777777776643 234556667777
Q ss_pred eccCCCCcc-cCccccCCcCCcEEECCCCCCCcCc--hhhcCCCCccEEEccCCCCcccch----hhcCCcCCCEEEccC
Q psy3966 132 NLSGNQLEQ-FPIQILDIPTLKYLYLGNNSLNHVP--REINKLCKLHVLSLGGNSLTDIPD----TFGDLYQLEALILSD 204 (392)
Q Consensus 132 ~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~l~~l~--~~l~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~L~~ 204 (392)
++++|.++. +|..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 777776665 4444444666666666666666554 455566666666666666665544 455566666666666
Q ss_pred CCCCCcch
Q psy3966 205 NQLESLPA 212 (392)
Q Consensus 205 n~l~~l~~ 212 (392)
|.+.++|.
T Consensus 157 n~~~~~~~ 164 (168)
T 2ell_A 157 REDQEAPD 164 (168)
T ss_dssp TTSCBCCS
T ss_pred CChhhccc
Confidence 65555543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=6e-17 Score=135.02 Aligned_cols=136 Identities=24% Similarity=0.227 Sum_probs=88.7
Q ss_pred CCCcEEeccCCCCc--ccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcc-cchhhcCCcCCCEEEc
Q psy3966 126 KNLKVFNLSGNQLE--QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD-IPDTFGDLYQLEALIL 202 (392)
Q Consensus 126 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~L 202 (392)
++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 66777777777776 6666666677777777777777766 566677777777777777775 5555556777777777
Q ss_pred cCCCCCCcc--hhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc
Q psy3966 203 SDNQLESLP--ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT 262 (392)
Q Consensus 203 ~~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~ 262 (392)
++|.++.++ ..+..+++|+.|++++|.++.++..........++|+.|++++|.+.++|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 777777655 456666777777777777666655111111122356666666666655554
No 120
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=9.2e-20 Score=182.52 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=64.0
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCC-CCCC--CCccccCCCCCCEEEccCCcCCc---
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHN-NLSF--FPDNASKFTNLRSLDLSNNRITH--- 93 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n-~l~~--i~~~l~~l~~L~~L~Ls~n~l~~--- 93 (392)
.+++|++|+|+++.+++..+...... +++|++|+|++| .++. ++..+.++++|++|++++|.++.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~---------~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKS---------FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHH---------CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHh---------CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 34566666666666555443332211 356666666666 3432 33333456666666666666442
Q ss_pred --CCcccc-CccchhhhhhcCC--CCCCCCCccCCCCCCCcEEeccCC-CCcccCccccCCcCCcEEECCC
Q psy3966 94 --LPQAIT-NFPLSTLIARNNL--LTAESLPKDMSNLKNLKVFNLSGN-QLEQFPIQILDIPTLKYLYLGN 158 (392)
Q Consensus 94 --l~~~~~-~~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~ 158 (392)
++.... +++|++|+++++. ++...++..+.++++|++|++++| .++.++..+..+++|++|+++.
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 111121 4456666666554 221112222234566666666665 3334444444455555555443
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.1e-16 Score=127.93 Aligned_cols=109 Identities=25% Similarity=0.299 Sum_probs=66.4
Q ss_pred CCCcEEeccCCCCc--ccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcc-cchhhcCCcCCCEEEc
Q psy3966 126 KNLKVFNLSGNQLE--QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD-IPDTFGDLYQLEALIL 202 (392)
Q Consensus 126 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~L 202 (392)
++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 55666666666666 5565555666666666666666655 555566666666666666665 5555555666666666
Q ss_pred cCCCCCCcc--hhhhCCcccceeeccCCcCCCCCh
Q psy3966 203 SDNQLESLP--ASISNLKMLKSLLLHNNKLRTLPT 235 (392)
Q Consensus 203 ~~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~~~~ 235 (392)
++|.++.++ ..+..+++|++|++++|.+++++.
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 666666543 445556666666666666555544
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=6.2e-16 Score=126.11 Aligned_cols=124 Identities=30% Similarity=0.298 Sum_probs=83.9
Q ss_pred CcCCcEEECCCCCCC--cCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCC-cchhhhCCcccceee
Q psy3966 148 IPTLKYLYLGNNSLN--HVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLES-LPASISNLKMLKSLL 224 (392)
Q Consensus 148 l~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~ 224 (392)
.+++++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356777777777776 6666667777777777777777766 556677777777777777775 555566677777777
Q ss_pred ccCCcCCCCC--hhhHhhhcccccCcEEEccCCCCCCCCc----cccCCCCCCEEeCc
Q psy3966 225 LHNNKLRTLP--TEIITLKCLSEKLKSLLLHNNKLRTLPT----EIITLKCLSELSLR 276 (392)
Q Consensus 225 L~~n~l~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~ 276 (392)
+++|.+++++ ..+..+ ++|+.|++++|.++.+|. .+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l----~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKL----ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGC----TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhC----CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776653 333332 367777777777776654 45567777777765
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=1.3e-16 Score=134.01 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=67.5
Q ss_pred CCCCCCcEEeccCCCCcccCccccCC-cCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchh-hcCCcCCCEE
Q psy3966 123 SNLKNLKVFNLSGNQLEQFPIQILDI-PTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDT-FGDLYQLEAL 200 (392)
Q Consensus 123 ~~l~~L~~L~l~~n~l~~l~~~l~~l-~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L 200 (392)
.++.+|++|++++|.++.++. +..+ ++|++|++++|.++.+ ..+..+++|++|++++|.++.+|+. +..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 345556666666665555532 3332 2555555555555544 3444555555555555555544432 2445555555
Q ss_pred EccCCCCCCcch--hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCcc----ccCCCCCCEEe
Q psy3966 201 ILSDNQLESLPA--SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE----IITLKCLSELS 274 (392)
Q Consensus 201 ~L~~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~----l~~l~~L~~L~ 274 (392)
++++|.++.+|. .+..+++ |+.|++++|.++.+|.. +..+++|++||
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~---------------------------L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKS---------------------------LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTT---------------------------CCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ECCCCcCCcchhhHhhhcCCC---------------------------CCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 555555554443 3444444 55555555555444443 55566677777
Q ss_pred CcCCCCc
Q psy3966 275 LRDNPLV 281 (392)
Q Consensus 275 l~~N~l~ 281 (392)
+++|...
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 7666554
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=3.1e-18 Score=171.36 Aligned_cols=253 Identities=18% Similarity=0.139 Sum_probs=124.9
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCC--CC--CCCccccCCCCCCEEEccCC-cCCcC
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNN--LS--FFPDNASKFTNLRSLDLSNN-RITHL 94 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~--l~--~i~~~l~~l~~L~~L~Ls~n-~l~~l 94 (392)
.+++|++|+|++|.+++.... .+.. +...+++|++|++++|. ++ .+...+..+++|++|++++| .++.+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~-~l~~-----~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l 227 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGH-WLSH-----FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGG-GGGG-----SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred hCCCCCEEeCcCCccCCcchH-HHHH-----HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence 577888888888876553322 1211 22345678888888776 22 12222345677777777776 22222
Q ss_pred Ccccc-C------------------------------------------------------ccchhhhhhcCCCCCCCCC
Q psy3966 95 PQAIT-N------------------------------------------------------FPLSTLIARNNLLTAESLP 119 (392)
Q Consensus 95 ~~~~~-~------------------------------------------------------~~L~~L~l~~n~~~~~~~~ 119 (392)
+..+. + .+|++|++++|.++...+.
T Consensus 228 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~ 307 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307 (594)
T ss_dssp HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHH
T ss_pred HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHH
Confidence 22222 3 3344444444443322222
Q ss_pred ccCCCCCCCcEEeccCCCCc--ccCccccCCcCCcEEECCC---------CCCCc--CchhhcCCCCccEEEccCCCCcc
Q psy3966 120 KDMSNLKNLKVFNLSGNQLE--QFPIQILDIPTLKYLYLGN---------NSLNH--VPREINKLCKLHVLSLGGNSLTD 186 (392)
Q Consensus 120 ~~~~~l~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~---------n~l~~--l~~~l~~~~~L~~L~l~~n~l~~ 186 (392)
..+..+++|++|++++| ++ .++.....+++|++|++.+ +.++. +......+++|++|.+..|.++.
T Consensus 308 ~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 308 KLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 22334444444444444 22 1111111244555555422 22221 11111234555555555555552
Q ss_pred c-chhh-cCCcCCCEEEcc--C----CCCCCcc------hhhhCCcccceeeccCCcCCC-CChhhHhhhcccccCcEEE
Q psy3966 187 I-PDTF-GDLYQLEALILS--D----NQLESLP------ASISNLKMLKSLLLHNNKLRT-LPTEIITLKCLSEKLKSLL 251 (392)
Q Consensus 187 l-~~~l-~~l~~L~~L~L~--~----n~l~~l~------~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~ 251 (392)
. ...+ ..+++|++|+++ + +.++..| ..+..+++|+.|++++ .++. ....+.. ..++|+.|+
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~ 462 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLS 462 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEE
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEee
Confidence 1 1222 246677777776 3 4455322 1245566777777765 4432 1111211 234788888
Q ss_pred ccCCCCCC-CCccc-cCCCCCCEEeCcCCCCccc
Q psy3966 252 LHNNKLRT-LPTEI-ITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 252 l~~n~l~~-l~~~l-~~l~~L~~L~l~~N~l~~~ 283 (392)
+++|.++. .+..+ ..+++|++|++++|++++.
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 88887752 12222 4578888888888887544
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.1e-15 Score=130.32 Aligned_cols=127 Identities=28% Similarity=0.447 Sum_probs=84.9
Q ss_pred cEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccch--hhcCCcCCCEEEccCCCCCCc-chhhhCCcccceeeccCC
Q psy3966 152 KYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNN 228 (392)
Q Consensus 152 ~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n 228 (392)
+++++++|.++.+|..+.. ++++|++++|.++.++. .++.+++|++|++++|+++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4566666666666554433 56666666666666543 266667777777777777655 446667777777777777
Q ss_pred cCCCCChh-hHhhhcccccCcEEEccCCCCCCC-CccccCCCCCCEEeCcCCCCcccc
Q psy3966 229 KLRTLPTE-IITLKCLSEKLKSLLLHNNKLRTL-PTEIITLKCLSELSLRDNPLVIRF 284 (392)
Q Consensus 229 ~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~N~l~~~~ 284 (392)
.++.++.. +..+ ++|+.|++++|+++.+ |..+..+++|++|++++|++.+..
T Consensus 89 ~l~~~~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGL----HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCC----CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 77755543 2222 3788888888888754 566778899999999999988653
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=4.5e-16 Score=158.86 Aligned_cols=182 Identities=26% Similarity=0.193 Sum_probs=101.2
Q ss_pred ccchhhhhhcCCCCCCCCCccCCCCCCCc-----EEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCcc
Q psy3966 101 FPLSTLIARNNLLTAESLPKDMSNLKNLK-----VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175 (392)
Q Consensus 101 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-----~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~ 175 (392)
+.++.|.+.++.+.. .+..+.....|+ .++++.|.+...+..+..++.|+.|+|++|.+..+|..+..+++|+
T Consensus 173 ~~~~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc--chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 446666776666653 232222222222 2333334444445556667788888888888887877777788888
Q ss_pred EEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCC
Q psy3966 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255 (392)
Q Consensus 176 ~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 255 (392)
+|+|++|.++.+|..++.+++|++|+|++|.|+.+|..+..+++|++|+|++|.|+.+|..+..+. +|+.|+|++|
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~----~L~~L~L~~N 326 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC----NLQFLGVEGN 326 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCT----TCCCEECTTS
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCC----CccEEeCCCC
Confidence 888888888878777788888888888888888777778888888888888888887777655543 7888888888
Q ss_pred CCCCC-CccccCCC-CCCEEeCcCCCCccccccCc
Q psy3966 256 KLRTL-PTEIITLK-CLSELSLRDNPLVIRFVSDM 288 (392)
Q Consensus 256 ~l~~l-~~~l~~l~-~L~~L~l~~N~l~~~~~~~~ 288 (392)
.++.. |..+..+. .+..+++++|.+++.++..+
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 88743 44443321 12246777888777666543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=8.4e-16 Score=129.10 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=117.4
Q ss_pred cCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhh-cCC
Q psy3966 93 HLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKL 171 (392)
Q Consensus 93 ~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l-~~~ 171 (392)
..+......+|++|++++|.++. ++......++|++|++++|.++.+ ..+..+++|++|++++|.++.+|+.+ ..+
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp TSCEEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HHHhcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 44444458899999999999984 454333345999999999999988 57888999999999999999887654 889
Q ss_pred CCccEEEccCCCCcccch--hhcCCcCCCEEEccCCCCCCcchh----hhCCcccceeeccCCcCCC
Q psy3966 172 CKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESLPAS----ISNLKMLKSLLLHNNKLRT 232 (392)
Q Consensus 172 ~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~l~~~----l~~l~~L~~L~L~~n~l~~ 232 (392)
++|++|++++|.++.+|. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999999999887 789999999999999999988874 8899999999999998763
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=128.72 Aligned_cols=127 Identities=30% Similarity=0.473 Sum_probs=85.4
Q ss_pred cEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcC
Q psy3966 152 KYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKL 230 (392)
Q Consensus 152 ~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l 230 (392)
+.++++++.++.+|..+. +++++|++++|.++.+|..+..+++|++|++++|.|+.++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 455666666666655442 35666666666666666666666777777777777766553 466777777777777777
Q ss_pred CCCChhhHhhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCccc
Q psy3966 231 RTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 231 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~ 283 (392)
+.+++..+. ..++|+.|++++|.|+.+|.. +..+++|+.|++++|++...
T Consensus 91 ~~i~~~~f~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 91 RCIPPRTFD---GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CBCCTTTTT---TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEeCHHHhC---CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 766653221 123778888888888777664 66788999999999998753
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9e-15 Score=124.68 Aligned_cols=125 Identities=30% Similarity=0.477 Sum_probs=81.4
Q ss_pred cEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCC
Q psy3966 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207 (392)
Q Consensus 129 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l 207 (392)
++++++++.++.+|..+. +++++|++++|.++.+|..+..+++|++|++++|.++.++ ..|..+++|++|++++|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456667776666665443 4667777777777766666667777777777777777664 3566677777777777777
Q ss_pred CCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCC
Q psy3966 208 ESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258 (392)
Q Consensus 208 ~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 258 (392)
+.++. .+..+++|+.|++++|.++.++...+. ..++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN---DLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT---TCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh---cCccccEEEeCCCCee
Confidence 76554 466677777777777777766654322 1236777777777654
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=2.8e-15 Score=138.90 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=63.1
Q ss_pred ccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCcccc
Q psy3966 20 KTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT 99 (392)
Q Consensus 20 ~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~ 99 (392)
.+.++++|+++++ +....+... .. .+++|++|||++|++..+...-+.++.++.+.+..|.| |...+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l-~~--------~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I---~~~aF 89 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHL-RD--------EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFV---PAYAF 89 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHH-HH--------SCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEE---CTTTT
T ss_pred hhCceeEEEEecc-ccHHHHHHH-HH--------hhccCeEEecCcceeEEecCcccccccccccccccccc---CHHHh
Confidence 4567889999876 333333322 21 15789999999998872111111222234444444422 22221
Q ss_pred ----------CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcccc-CCcCCcEEECCC
Q psy3966 100 ----------NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGN 158 (392)
Q Consensus 100 ----------~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~-~l~~L~~L~l~~ 158 (392)
+.+|+.+++.. .++. .-+.+|.+|++|+.+++++|.+..++...+ ++.++..+....
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cccccccccccCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 35566666655 4432 223456666666666666666655544332 344444444433
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=7.4e-15 Score=125.11 Aligned_cols=126 Identities=23% Similarity=0.329 Sum_probs=69.4
Q ss_pred cEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCC
Q psy3966 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138 (392)
Q Consensus 59 ~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 138 (392)
+++++++++++.+|..+. .+|++|++++|.++.++.. ..+..+++|++|++++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~----------------------~~~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSD----------------------GLFGRLPHLVKLELKRNQL 66 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCS----------------------CSGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCc----------------------cccccCCCCCEEECCCCCC
Confidence 455555555555555443 2556666666655544321 1234455555555555555
Q ss_pred ccc-CccccCCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCC
Q psy3966 139 EQF-PIQILDIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLE 208 (392)
Q Consensus 139 ~~l-~~~l~~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~ 208 (392)
+.+ |..+..+++|++|++++|.++.++. .+..+++|++|++++|+++.+ |..+..+++|++|++++|.++
T Consensus 67 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 544 3344455555556665555554433 255566666666666666644 445666666666666666665
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=3.1e-14 Score=119.49 Aligned_cols=128 Identities=34% Similarity=0.498 Sum_probs=93.9
Q ss_pred CcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCC
Q psy3966 151 LKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNN 228 (392)
Q Consensus 151 L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n 228 (392)
.+.+++++++++.+|..+. +++++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4566677777776665443 467777777777776654 45777788888888888877765 3577888888888888
Q ss_pred cCCCCChhhHhhhcccccCcEEEccCCCCCCCCccc-cCCCCCCEEeCcCCCCccc
Q psy3966 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEI-ITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l-~~l~~L~~L~l~~N~l~~~ 283 (392)
.++.++...+. ..++|+.|++++|.++.+|... ..+++|++|++++|++.+.
T Consensus 87 ~l~~~~~~~~~---~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFD---KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhh---CCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 88877765322 1247888999999888887764 6689999999999998764
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=7.3e-17 Score=138.32 Aligned_cols=134 Identities=28% Similarity=0.362 Sum_probs=72.1
Q ss_pred ccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcchhhhCCcc
Q psy3966 140 QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKM 219 (392)
Q Consensus 140 ~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~~ 219 (392)
.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .+..+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 34444555556666666666555555 555555666666666665555555555556666666666665554 3555556
Q ss_pred cceeeccCCcCCCCCh--hhHhhhcccccCcEEEccCCCCCCCCc-----------cccCCCCCCEEeCcCCCCc
Q psy3966 220 LKSLLLHNNKLRTLPT--EIITLKCLSEKLKSLLLHNNKLRTLPT-----------EIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 220 L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~l~~-----------~l~~l~~L~~L~l~~N~l~ 281 (392)
|+.|++++|.++.++. .+.. .++|+.|++++|.++..++ .+..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~----l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAA----LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTT----TTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhc----CCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666665554433 1222 2356666666665542211 144566666665 45443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1e-13 Score=116.34 Aligned_cols=65 Identities=32% Similarity=0.529 Sum_probs=26.3
Q ss_pred CCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEECCCCCCCcCchh-hcCCCCccEEEccCCCCccc
Q psy3966 123 SNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDI 187 (392)
Q Consensus 123 ~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l 187 (392)
..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.++.+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe
Confidence 3444444444444444444332 22344444444444444433322 23333444444444443333
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.5e-14 Score=133.86 Aligned_cols=225 Identities=16% Similarity=0.172 Sum_probs=148.3
Q ss_pred cccccEEEeecCCCC--chh---hHh------hhhcccCCcCCCC--------CCCccEEEccCCCCCCCCc-cccCCCC
Q psy3966 21 TVSIKTLDFSYSSLD--SET---LAT------QIELLPNNDYNKK--------PENIDTLLLYHNNLSFFPD-NASKFTN 80 (392)
Q Consensus 21 ~~~L~~LdLs~n~l~--~~~---~~~------~~~~l~~~~~~~~--------~~~L~~L~L~~n~l~~i~~-~l~~l~~ 80 (392)
+++|++|||++|.+. ... .+. ....++...| .. +++|++|+|.+ .++.|++ +|.+|++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF-~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAF-SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTT-EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHh-cccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 678999999999987 111 000 0002233333 34 68899999988 8887755 4788899
Q ss_pred CCEEEccCCcCCcCCcccc--CccchhhhhhcCCC---CCCCCCccCCCCCCCc-EEecc--------------------
Q psy3966 81 LRSLDLSNNRITHLPQAIT--NFPLSTLIARNNLL---TAESLPKDMSNLKNLK-VFNLS-------------------- 134 (392)
Q Consensus 81 L~~L~Ls~n~l~~l~~~~~--~~~L~~L~l~~n~~---~~~~~~~~~~~l~~L~-~L~l~-------------------- 134 (392)
|+.+++++|.+..+++..+ +.++..+....+.. ........+.++..|+ .+.+.
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 9999999998887777666 44454444433111 0001122333444444 23332
Q ss_pred -----CCCCcccCcccc-CCcCCcEEECCCCCCCcCch-hhcCCCCccEEEccCCCCcccc-hhhcCCcCCC-EEEccCC
Q psy3966 135 -----GNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPR-EINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLE-ALILSDN 205 (392)
Q Consensus 135 -----~n~l~~l~~~l~-~l~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~-~L~L~~n 205 (392)
++-...-...+. .+++|+++++++|.++.++. .|..+++|+++++.+| ++.++ .+|.++.+|+ .+++.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 110000000111 27889999999999998865 4888999999999887 77775 4788999999 999988
Q ss_pred CCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEc
Q psy3966 206 QLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLL 252 (392)
Q Consensus 206 ~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 252 (392)
.++.++. +|..+++|+.+++++|.++.++...+. .+++|+.++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~---~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG---NGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC---TTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhc---CCcchhhhcc
Confidence 7887764 789999999999999999988876554 2357887753
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1e-16 Score=137.45 Aligned_cols=137 Identities=24% Similarity=0.291 Sum_probs=107.0
Q ss_pred CCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCC
Q psy3966 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQL 197 (392)
Q Consensus 118 ~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L 197 (392)
+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+..+++|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 4447778889999999999888887 777788999999999998888887777788999999999998886 57888899
Q ss_pred CEEEccCCCCCCcch--hhhCCcccceeeccCCcCCCCChh-------hHhhhcccccCcEEEccCCCCC
Q psy3966 198 EALILSDNQLESLPA--SISNLKMLKSLLLHNNKLRTLPTE-------IITLKCLSEKLKSLLLHNNKLR 258 (392)
Q Consensus 198 ~~L~L~~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~~~~~-------~~~~~~~~~~L~~L~l~~n~l~ 258 (392)
++|++++|.++.++. .+..+++|++|++++|.++..++. ........++|+.|+ ++.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999999999987764 678889999999999988644221 111112335888886 56554
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=8e-13 Score=125.38 Aligned_cols=189 Identities=14% Similarity=0.216 Sum_probs=88.7
Q ss_pred CCCEEEccCCcCCcCCcccc--CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCcc-ccCCcCCcEEEC
Q psy3966 80 NLRSLDLSNNRITHLPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYL 156 (392)
Q Consensus 80 ~L~~L~Ls~n~l~~l~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l 156 (392)
+|+.+.+.+ .++.|+...+ +.+|+.+++..|.++. ++.....+.+|+.+.+..+ ++.++.. +.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 344444443 3443433333 4444444444444431 2221112355555555532 4444333 223555555555
Q ss_pred CCCCCCcCchh-hcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCCC-----Ccch-hhhCCcccceeeccCC
Q psy3966 157 GNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLE-----SLPA-SISNLKMLKSLLLHNN 228 (392)
Q Consensus 157 ~~n~l~~l~~~-l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~-----~l~~-~l~~l~~L~~L~L~~n 228 (392)
..+ ++.++.. |.. .+|+.+.+ .+.++.++ .+|.++++|+.+++.+|.+. .++. .|..+++|+.+.+. +
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred CCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 543 3333322 222 45555555 33444442 35555666666666555443 2332 45566666666665 3
Q ss_pred cCCCCChhhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCCc
Q psy3966 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPLV 281 (392)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l~ 281 (392)
.++.++...+. .+.+|+.+.+..+ ++.++. .+.++ +|+.+++++|.+.
T Consensus 310 ~i~~I~~~aF~---~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 310 SIRILGQGLLG---GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCCEECTTTTT---TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ceEEEhhhhhc---CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 35555444332 1235666666433 554433 34445 6666666666543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=7e-13 Score=110.91 Aligned_cols=107 Identities=33% Similarity=0.469 Sum_probs=84.1
Q ss_pred CcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEccCCCCcccchh-hcCCcCCCEEEccCC
Q psy3966 128 LKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIPDT-FGDLYQLEALILSDN 205 (392)
Q Consensus 128 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~L~~n 205 (392)
-+.+++++|+++.+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|+++.+|.. |..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3678888888888887664 7788888888888876 45677888888888888888887654 577888888888888
Q ss_pred CCCCcchh-hhCCcccceeeccCCcCCCCChh
Q psy3966 206 QLESLPAS-ISNLKMLKSLLLHNNKLRTLPTE 236 (392)
Q Consensus 206 ~l~~l~~~-l~~l~~L~~L~L~~n~l~~~~~~ 236 (392)
+|+.+|.. +..+++|+.|++++|.+...+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 88877764 77888888888888888765543
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.1e-14 Score=136.79 Aligned_cols=155 Identities=18% Similarity=0.125 Sum_probs=93.9
Q ss_pred CCccEEEccCCCCCC-----CCcccc-CCCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCCCCCCCc
Q psy3966 56 ENIDTLLLYHNNLSF-----FPDNAS-KFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLK 129 (392)
Q Consensus 56 ~~L~~L~L~~n~l~~-----i~~~l~-~l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 129 (392)
++|++|+|++|.++. +...+. ..++|++|+|++|.++.... ......+++|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~----------------------~~l~~~L~~L~ 129 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL----------------------RTLLPVFLRAR 129 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHH----------------------HHTHHHHHTEE
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHH----------------------HHHHHHHHhcc
Confidence 467777777777762 222222 23577888888877652110 00001123466
Q ss_pred EEeccCCCCccc-----Cccc-cCCcCCcEEECCCCCCCc-----CchhhcCCCCccEEEccCCCCcc-----cchhhcC
Q psy3966 130 VFNLSGNQLEQF-----PIQI-LDIPTLKYLYLGNNSLNH-----VPREINKLCKLHVLSLGGNSLTD-----IPDTFGD 193 (392)
Q Consensus 130 ~L~l~~n~l~~l-----~~~l-~~l~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~n~l~~-----l~~~l~~ 193 (392)
+|++++|.++.. ...+ ...++|++|++++|.++. ++..+..+++|++|++++|.++. ++..+..
T Consensus 130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 666666666521 1112 134667777777777652 44455667777777777777763 3455666
Q ss_pred CcCCCEEEccCCCCCC-----cchhhhCCcccceeeccCCcCCC
Q psy3966 194 LYQLEALILSDNQLES-----LPASISNLKMLKSLLLHNNKLRT 232 (392)
Q Consensus 194 l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~ 232 (392)
.++|++|+|++|.|+. ++..+...++|++|+|++|.|+.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7778888888888772 33445566778888888888773
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=1.1e-12 Score=109.21 Aligned_cols=106 Identities=36% Similarity=0.511 Sum_probs=80.2
Q ss_pred CcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEccCCCCcccch-hhcCCcCCCEEEccCC
Q psy3966 128 LKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDN 205 (392)
Q Consensus 128 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~L~~n 205 (392)
.+++++++|.++.+|..+. +++++|++++|.++.+ |..+..+++|++|++++|+++.++. .|..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888776653 6788888888888876 4557778888888888888887765 4577888888888888
Q ss_pred CCCCcch-hhhCCcccceeeccCCcCCCCCh
Q psy3966 206 QLESLPA-SISNLKMLKSLLLHNNKLRTLPT 235 (392)
Q Consensus 206 ~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~ 235 (392)
+++.++. .+..+++|+.|++++|.+...+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 8887765 47778888888888887775443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=7.9e-13 Score=110.15 Aligned_cols=105 Identities=30% Similarity=0.436 Sum_probs=75.9
Q ss_pred ccEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcc-hhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEc
Q psy3966 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLL 252 (392)
Q Consensus 174 L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 252 (392)
.+.+++++|.++.+|..+. ++|++|++++|+|+.++ ..+..+++|++|++++|+++.++...+. ..++|+.|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~---~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD---KLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---TCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc---CCCCCCEEEC
Confidence 4566777777776665442 67777777777777663 4577777788888888877777765432 1247888888
Q ss_pred cCCCCCCCCcc-ccCCCCCCEEeCcCCCCccc
Q psy3966 253 HNNKLRTLPTE-IITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 253 ~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~~ 283 (392)
++|+|+.+|.. +..+++|++|++++|++...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88888877764 67789999999999998754
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=1.6e-14 Score=135.71 Aligned_cols=187 Identities=19% Similarity=0.178 Sum_probs=124.2
Q ss_pred CCCCCEEEccCCcCCcCCccccCccchhhhhhcCCCCCCCCCccCC-CCCCCcEEeccCCCCcc--cCccccCCcCCcEE
Q psy3966 78 FTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMS-NLKNLKVFNLSGNQLEQ--FPIQILDIPTLKYL 154 (392)
Q Consensus 78 l~~L~~L~Ls~n~l~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L 154 (392)
+++|++|++++|.++..... .+...+. ..++|++|++++|.++. +......+++|++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~-------------------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L 131 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT-------------------VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH-------------------HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEE
T ss_pred HhhCCEEEecCCCCCHHHHH-------------------HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHh
Confidence 35677888888877632210 1122222 34689999999999873 22222246789999
Q ss_pred ECCCCCCCcC-----chhh-cCCCCccEEEccCCCCcc-----cchhhcCCcCCCEEEccCCCCCC-----cchhhhCCc
Q psy3966 155 YLGNNSLNHV-----PREI-NKLCKLHVLSLGGNSLTD-----IPDTFGDLYQLEALILSDNQLES-----LPASISNLK 218 (392)
Q Consensus 155 ~l~~n~l~~l-----~~~l-~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~l~ 218 (392)
++++|.++.. ...+ ...++|++|++++|.++. ++..+...++|++|+|++|.|+. ++..+...+
T Consensus 132 ~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 9999999732 2333 357899999999999974 45667889999999999999983 345677888
Q ss_pred ccceeeccCCcCCCCCh-hhHhhhcccccCcEEEccCCCCCCCC-ccc---cCCC--CCCEEe--CcCCCCccc
Q psy3966 219 MLKSLLLHNNKLRTLPT-EIITLKCLSEKLKSLLLHNNKLRTLP-TEI---ITLK--CLSELS--LRDNPLVIR 283 (392)
Q Consensus 219 ~L~~L~L~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l---~~l~--~L~~L~--l~~N~l~~~ 283 (392)
+|++|+|++|.|+.... .+.......++|++|++++|.|+... ..+ .... .|+.+. +..|.+...
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 99999999999984322 12221122358999999999997322 122 2222 277777 777777543
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.1e-12 Score=109.77 Aligned_cols=102 Identities=27% Similarity=0.455 Sum_probs=72.8
Q ss_pred cEEEccCCCCcccchhhcCCcCCCEEEccCCCCCCcc-hhhhCCcccceeeccCCcCCCCChhhH-hhhcccccCcEEEc
Q psy3966 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEII-TLKCLSEKLKSLLL 252 (392)
Q Consensus 175 ~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~L~~L~l 252 (392)
+.+++++|.++.+|..+. ++|++|++++|+++.++ ..+..+++|+.|+|++|+|+.+|...+ .+ ++|+.|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l----~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL----TQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----TTCCEEEC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc----chhhEEEC
Confidence 556666666666665443 56777777777777653 456777777777777777777766542 22 37888888
Q ss_pred cCCCCCCCCcc-ccCCCCCCEEeCcCCCCcc
Q psy3966 253 HNNKLRTLPTE-IITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 253 ~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 282 (392)
++|+|+.+|.. +..+++|++|++++|++..
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88888877765 6778999999999998864
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=1.2e-11 Score=117.29 Aligned_cols=235 Identities=12% Similarity=0.162 Sum_probs=152.3
Q ss_pred ccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCcccc-
Q psy3966 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAIT- 99 (392)
Q Consensus 22 ~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~~- 99 (392)
.+|+.+++..+ +. .+...+|.. .+|+++.+.. .++.++ .+|.+|++|+.+++++|+++.++...+
T Consensus 135 ~~L~~i~l~~~-i~---------~I~~~aF~~--~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~ 201 (401)
T 4fdw_A 135 SQIAKVVLNEG-LK---------SIGDMAFFN--STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201 (401)
T ss_dssp CCCSEEECCTT-CC---------EECTTTTTT--CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT
T ss_pred CCccEEEeCCC-cc---------EECHHhcCC--CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe
Confidence 36777777655 22 222333333 2578888775 566554 346778888888888888887777766
Q ss_pred CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEE
Q psy3966 100 NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLS 178 (392)
Q Consensus 100 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~ 178 (392)
...|+.+.+..+ +.. .-..+|.++++|+.+++..+ ++.++...+.-.+|+.+.+ .+.++.+ ...|..+++|+.+.
T Consensus 202 ~~~L~~l~lp~~-l~~-I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKE-IGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCE-ECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hhe-ehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 677777777644 331 23456777888888888764 5666655555577888888 3445555 34577788888888
Q ss_pred ccCCCCc-----ccc-hhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEE
Q psy3966 179 LGGNSLT-----DIP-DTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLL 251 (392)
Q Consensus 179 l~~n~l~-----~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 251 (392)
+.+|.+. .++ .+|.++++|+.+++. +.++.++. +|..+++|+.+.+..+ ++.+....+. .+ +|+.++
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~---~~-~L~~l~ 351 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN---NT-GIKEVK 351 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS---SS-CCCEEE
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC---CC-CCCEEE
Confidence 8776654 343 467778888888887 44776654 5777788888888554 6666555443 22 688888
Q ss_pred ccCCCCCCCCcc-ccCC-CCCCEEeCcCCC
Q psy3966 252 LHNNKLRTLPTE-IITL-KCLSELSLRDNP 279 (392)
Q Consensus 252 l~~n~l~~l~~~-l~~l-~~L~~L~l~~N~ 279 (392)
+.+|.+..++.. +..+ ..++.|.+..+.
T Consensus 352 l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 352 VEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 888877766543 3334 356666665543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=9.4e-11 Score=109.06 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=62.0
Q ss_pred EEECCCC-CCCcCchhhcCCCCccEEEccC-CCCcccc-hhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCC
Q psy3966 153 YLYLGNN-SLNHVPREINKLCKLHVLSLGG-NSLTDIP-DTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNN 228 (392)
Q Consensus 153 ~L~l~~n-~l~~l~~~l~~~~~L~~L~l~~-n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n 228 (392)
.++.+++ +++.+|. +..+++|++|+|++ |.++.++ ..|..+++|++|+|++|+|+.++. .|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566665 6666666 66666677777764 6666664 356666666666666666665543 4566666666666666
Q ss_pred cCCCCChhhHhhhcccccCcEEEccCCCCC
Q psy3966 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258 (392)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 258 (392)
+|+.+|...+... .|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~----~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGL----SLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSC----CCCEEECCSSCCC
T ss_pred ccceeCHHHcccC----CceEEEeeCCCcc
Confidence 6666655443322 2555555555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.5e-10 Score=107.69 Aligned_cols=100 Identities=28% Similarity=0.342 Sum_probs=50.3
Q ss_pred EeccCC-CCcccCccccCCcCCcEEECCC-CCCCcCc-hhhcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCC
Q psy3966 131 FNLSGN-QLEQFPIQILDIPTLKYLYLGN-NSLNHVP-REINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQ 206 (392)
Q Consensus 131 L~l~~n-~l~~l~~~l~~l~~L~~L~l~~-n~l~~l~-~~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~ 206 (392)
++++++ +++.+|. +..+++|++|+|++ |.++.++ ..+..+++|++|+|++|+++.++ ..|..+++|++|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344544 5555554 54555555555553 5555443 23555555555555555555443 244555555555555555
Q ss_pred CCCcchhhhCCcccceeeccCCcCC
Q psy3966 207 LESLPASISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 207 l~~l~~~l~~l~~L~~L~L~~n~l~ 231 (392)
|+.+|..+.....|+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 5555443222222555555555554
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=6.2e-10 Score=93.81 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=63.2
Q ss_pred cCCCCCCCcEEeccCC-CCc-----ccCccccCCcCCcEEECCCCCCC-----cCchhhcCCCCccEEEccCCCCcc---
Q psy3966 121 DMSNLKNLKVFNLSGN-QLE-----QFPIQILDIPTLKYLYLGNNSLN-----HVPREINKLCKLHVLSLGGNSLTD--- 186 (392)
Q Consensus 121 ~~~~l~~L~~L~l~~n-~l~-----~l~~~l~~l~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~n~l~~--- 186 (392)
.+...+.|++|++++| .+. .+...+...++|++|++++|.++ .+...+...++|++|++++|.++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666777777776 665 23334444566666666666665 233444555566666666666652
Q ss_pred --cchhhcCCcCCCEEEc--cCCCCCC-----cchhhhCCcccceeeccCCcCC
Q psy3966 187 --IPDTFGDLYQLEALIL--SDNQLES-----LPASISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 187 --l~~~l~~l~~L~~L~L--~~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~ 231 (392)
+...+...++|++|++ ++|.|+. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444555556666666 5566651 3334455556666666666554
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=2.1e-08 Score=94.90 Aligned_cols=125 Identities=13% Similarity=0.084 Sum_probs=69.9
Q ss_pred cccCCCCCCEEEccCCcCCcCCcccc--CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCcccCccccCCcCC
Q psy3966 74 NASKFTNLRSLDLSNNRITHLPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTL 151 (392)
Q Consensus 74 ~l~~l~~L~~L~Ls~n~l~~l~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L 151 (392)
+|.++++|+.+.+.++ +..++...+ +.+|+.+.+..+--. .-..++.++..|+.+.+..+.. .+........+|
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~--I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKI--IRDYCFAECILLENMEFPNSLY-YLGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceE--eCchhhccccccceeecCCCce-EeehhhcccCCC
Confidence 4677889999999765 455655555 678888888665211 2235677778888777765432 233333445566
Q ss_pred cEEECCCCCCCcC-chhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEcc
Q psy3966 152 KYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203 (392)
Q Consensus 152 ~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~ 203 (392)
+.+.+.... ..+ ...+..+..++.+.+..+...--...+..+..++.+...
T Consensus 233 ~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 233 KNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEEC
T ss_pred ceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccC
Confidence 666665432 222 223555666666666554322112234444444444443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=1.2e-09 Score=101.75 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=79.0
Q ss_pred CCCCcEEeccCCCCcc-cCccc--cCCcCCcEEECCC--CC------CCcCchhh--cCCCCccEEEccCCCCcc-cchh
Q psy3966 125 LKNLKVFNLSGNQLEQ-FPIQI--LDIPTLKYLYLGN--NS------LNHVPREI--NKLCKLHVLSLGGNSLTD-IPDT 190 (392)
Q Consensus 125 l~~L~~L~l~~n~l~~-l~~~l--~~l~~L~~L~l~~--n~------l~~l~~~l--~~~~~L~~L~l~~n~l~~-l~~~ 190 (392)
+++|++|++..+.+.. ....+ ..+++|++|+|+. +. +..+...+ ..+++|++|++.+|.+.. .+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 6778888887776651 11122 2577788887742 11 21222222 247889999998888773 2222
Q ss_pred h---cCCcCCCEEEccCCCCCC-----cchhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCC
Q psy3966 191 F---GDLYQLEALILSDNQLES-----LPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256 (392)
Q Consensus 191 l---~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 256 (392)
+ ..+++|++|+|+.|.++. ++..+..+++|+.|++++|.++.. ....+... -...++++.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~--~~~~l~~a--lg~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE--MKKELQKS--LPMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH--HHHHHHHH--CCSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH--HHHHHHHH--cCCEEEecCCc
Confidence 2 357889999999998883 334456678999999999987732 12222210 13568888776
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=8.1e-10 Score=102.98 Aligned_cols=135 Identities=17% Similarity=0.195 Sum_probs=71.1
Q ss_pred cCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcc-cchhh--cCCcCCCEEEccC--CC------CCCcchhh
Q psy3966 146 LDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD-IPDTF--GDLYQLEALILSD--NQ------LESLPASI 214 (392)
Q Consensus 146 ~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~-l~~~l--~~l~~L~~L~L~~--n~------l~~l~~~l 214 (392)
..+|+|+.|++++|.-..++. + ..++|++|++..+.+.. ....+ ..+++|++|+|+. +. +..+...+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 345666666666552122322 2 25666777766666541 11222 2566677776642 11 11222222
Q ss_pred --hCCcccceeeccCCcCCC-CChhhHhhhcccccCcEEEccCCCCCC-----CCccccCCCCCCEEeCcCCCCccc
Q psy3966 215 --SNLKMLKSLLLHNNKLRT-LPTEIITLKCLSEKLKSLLLHNNKLRT-----LPTEIITLKCLSELSLRDNPLVIR 283 (392)
Q Consensus 215 --~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~N~l~~~ 283 (392)
..+++|+.|++.+|.+.. .+..+... ...++|++|+|+.|.++. ++..+..+++|+.|++++|.+++.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 246677777777777652 22222221 123477777777777753 333444567777777777776543
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=3e-09 Score=89.62 Aligned_cols=116 Identities=11% Similarity=0.066 Sum_probs=63.2
Q ss_pred hhcCCCCccEEEccCC-CCc-----ccchhhcCCcCCCEEEccCCCCC-----CcchhhhCCcccceeeccCCcCCCCC-
Q psy3966 167 EINKLCKLHVLSLGGN-SLT-----DIPDTFGDLYQLEALILSDNQLE-----SLPASISNLKMLKSLLLHNNKLRTLP- 234 (392)
Q Consensus 167 ~l~~~~~L~~L~l~~n-~l~-----~l~~~l~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~~~~- 234 (392)
.+...++|++|++++| .+. .+...+...++|++|+|++|.|+ .+...+...++|++|+|++|.|+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 554 12334455556666666666655 12334445556666666666665211
Q ss_pred hhhHhhhcccccCcEEEc--cCCCCC-----CCCccccCCCCCCEEeCcCCCCcc
Q psy3966 235 TEIITLKCLSEKLKSLLL--HNNKLR-----TLPTEIITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 235 ~~~~~~~~~~~~L~~L~l--~~n~l~-----~l~~~l~~l~~L~~L~l~~N~l~~ 282 (392)
..+.......++|++|++ ++|.|+ .+...+...++|++|++++|.+..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 111111112235777777 666665 244455667788899998888753
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.83 E-value=2.6e-07 Score=87.31 Aligned_cols=107 Identities=13% Similarity=0.254 Sum_probs=75.6
Q ss_pred hhcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhccc
Q psy3966 167 EINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLS 244 (392)
Q Consensus 167 ~l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 244 (392)
.|..+..|+.+.+..+. ..+ ..+|.+++.|+.+.+. +.++.++. +|..+.+|+.+++..+ ++.+....+. .+
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~---~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA---GC 333 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT---TC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh---CC
Confidence 46677888888886543 333 3467788888888885 45666665 6788889999988764 6666655443 23
Q ss_pred ccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCCCC
Q psy3966 245 EKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDNPL 280 (392)
Q Consensus 245 ~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N~l 280 (392)
.+|+.+.+..+ ++.+.. .+.+|.+|+.+++.++..
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 58889888654 777764 566788999998887743
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=3.6e-08 Score=93.20 Aligned_cols=212 Identities=15% Similarity=0.112 Sum_probs=138.4
Q ss_pred CCCCCccEEEccCCCCCCCC-ccccCCCCCCEEEccCCcCCcCCcccc--CccchhhhhhcCCCCCCCCCccCCCCCCCc
Q psy3966 53 KKPENIDTLLLYHNNLSFFP-DNASKFTNLRSLDLSNNRITHLPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLK 129 (392)
Q Consensus 53 ~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~Ls~n~l~~l~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 129 (392)
..+.+|+.+.+.++- ..++ ..|.++.+|+.+++..+ ++.++...+ +..|+.+.+..+... +.........|+
T Consensus 159 ~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~---i~~~~~~~~~l~ 233 (394)
T 4fs7_A 159 ATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY---LGDFALSKTGVK 233 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE---ECTTTTTTCCCC
T ss_pred cccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE---eehhhcccCCCc
Confidence 456789999987653 3333 35678888999988776 666655544 666777766554432 223334456788
Q ss_pred EEeccCCCCcccCc-cccCCcCCcEEECCCCCCCcCchhhcCCCCccEEEccCCCCcccchhhcCCcCCCEEEccCCCCC
Q psy3966 130 VFNLSGNQLEQFPI-QILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLE 208 (392)
Q Consensus 130 ~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~L~~n~l~ 208 (392)
.+.+... ++.+.. .+..+..++.+.+..+...--...+..+..++.+....+.+. ...+..+.+|+.+.+..+ ++
T Consensus 234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CC
T ss_pred eEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccccccccccccc-cc
Confidence 8877643 344433 344578888888877654433445677777877776654322 135677888888888654 66
Q ss_pred Ccch-hhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCC
Q psy3966 209 SLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDN 278 (392)
Q Consensus 209 ~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N 278 (392)
.++. +|..+++|+.+++..+ ++.++...+. .+.+|+.+.+..+ ++.++. .+.+|.+|+.+++..+
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~---~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR---GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTT---TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhcc---CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6654 6778888888888644 6666655443 2347888888766 766654 5666888888888655
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.51 E-value=1.9e-06 Score=81.28 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=44.7
Q ss_pred hhcCCcCCCEEEccCCCCCCcc-hhhhCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc-cccCC
Q psy3966 190 TFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITL 267 (392)
Q Consensus 190 ~l~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l 267 (392)
+|..+..|+.+.+..+.. .+. .++..+++|+.+.+. +.++.++...+. .+.+|+.+.+..+ ++.+.. .+.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~---~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFA---GCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTT---TCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeec---CCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 345556666666654322 222 245666666666664 345555554433 2246777777543 555543 44556
Q ss_pred CCCCEEeCcCC
Q psy3966 268 KCLSELSLRDN 278 (392)
Q Consensus 268 ~~L~~L~l~~N 278 (392)
.+|+.+.+..+
T Consensus 334 ~~L~~i~ip~s 344 (394)
T 4gt6_A 334 EQLERIAIPSS 344 (394)
T ss_dssp TTCCEEEECTT
T ss_pred CCCCEEEECcc
Confidence 77777776543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.35 E-value=2.9e-05 Score=72.67 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=59.9
Q ss_pred hcCCCCccEEEccCCCCccc-chhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCCCCChhhHhhhcccc
Q psy3966 168 INKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSE 245 (392)
Q Consensus 168 l~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 245 (392)
+..+..++.+.+..+ +..+ ..++..+..|+.+.+..+ ++.+.. ++..+.+|+.+.+..+ ++.++...+. .+.
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~---~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS---GCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTT---TCT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccc---ccc
Confidence 444555666665433 3333 234566667777776554 454443 4566677777776543 4444443332 224
Q ss_pred cCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCC
Q psy3966 246 KLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDN 278 (392)
Q Consensus 246 ~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N 278 (392)
+|+.+.+.++.++.++. .+.++.+|+.+++..+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 67777777777766654 4455777777777544
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=3.7e-07 Score=80.87 Aligned_cols=39 Identities=33% Similarity=0.396 Sum_probs=16.5
Q ss_pred CcCCCEEEccCCCCCCcc---hhhhCCcccceeeccCCcCCC
Q psy3966 194 LYQLEALILSDNQLESLP---ASISNLKMLKSLLLHNNKLRT 232 (392)
Q Consensus 194 l~~L~~L~L~~n~l~~l~---~~l~~l~~L~~L~L~~n~l~~ 232 (392)
+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.|++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 344444444444444322 223344444444444444443
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.18 E-value=1.9e-06 Score=72.30 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCCCccEEEccCC-CCc-----ccchhhcCCcCCCEEEccCCCCC-----CcchhhhCCcccceeeccCCcCCCC-Chhh
Q psy3966 170 KLCKLHVLSLGGN-SLT-----DIPDTFGDLYQLEALILSDNQLE-----SLPASISNLKMLKSLLLHNNKLRTL-PTEI 237 (392)
Q Consensus 170 ~~~~L~~L~l~~n-~l~-----~l~~~l~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~~~-~~~~ 237 (392)
..+.|++|++++| .+. .+.+++..-+.|+.|+|++|.|+ .+.+.+...+.|++|+|+.|.|+.- ...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3344444555443 443 12334444445555555555554 2333444445555555555555411 0111
Q ss_pred HhhhcccccCcEEEccCC---CCC-----CCCccccCCCCCCEEeCcCCCC
Q psy3966 238 ITLKCLSEKLKSLLLHNN---KLR-----TLPTEIITLKCLSELSLRDNPL 280 (392)
Q Consensus 238 ~~~~~~~~~L~~L~l~~n---~l~-----~l~~~l~~l~~L~~L~l~~N~l 280 (392)
.........|++|+|++| .++ .+...+...++|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 111111234666666543 233 2334455567778888876654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=6.5e-07 Score=79.26 Aligned_cols=62 Identities=29% Similarity=0.356 Sum_probs=42.8
Q ss_pred cCCCCccEEEccCCCCcccc---hhhcCCcCCCEEEccCCCCCCcchhhhCCc--ccceeeccCCcCC
Q psy3966 169 NKLCKLHVLSLGGNSLTDIP---DTFGDLYQLEALILSDNQLESLPASISNLK--MLKSLLLHNNKLR 231 (392)
Q Consensus 169 ~~~~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~L~~n~l~~l~~~l~~l~--~L~~L~L~~n~l~ 231 (392)
.++++|++|+|++|.++.++ ..+..+++|+.|+|++|+|+.+. .+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 45677778888887777543 45567788888888888887652 233333 7778888888776
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.17 E-value=1.8e-06 Score=72.51 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=27.0
Q ss_pred hhcCCCCccEEEccCCCCc-----ccchhhcCCcCCCEEEccCCCCC-----CcchhhhCCcccceeeccC
Q psy3966 167 EINKLCKLHVLSLGGNSLT-----DIPDTFGDLYQLEALILSDNQLE-----SLPASISNLKMLKSLLLHN 227 (392)
Q Consensus 167 ~l~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~-----~l~~~l~~l~~L~~L~L~~ 227 (392)
.+...+.|+.|+|++|.+. .+.+.+..-+.|++|+|++|.|+ .+.+.+...+.|++|+|++
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3444444444444444444 12233334444555555555544 2223344444455555543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=4.4e-05 Score=71.41 Aligned_cols=241 Identities=15% Similarity=0.191 Sum_probs=144.5
Q ss_pred CCCccccccccEEEeecCCCCchhhHhhhhcccCCcCCCCCCCccEEEccCCCCCCCCccccCCCCCCEEEccCCcCCcC
Q psy3966 15 DSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHL 94 (392)
Q Consensus 15 ~~~~~~~~~L~~LdLs~n~l~~~~~~~~~~~l~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~Ls~n~l~~l 94 (392)
+.+|..|.+|+.++|..+ ++. +...+|. .+ +|+.+.+..+ ++.+........+|+.+++..+ ++.+
T Consensus 62 ~~aF~~C~~L~~I~lp~~-v~~---------Ig~~aF~-~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~~-~~~i 127 (379)
T 4h09_A 62 EANFNSCYNMTKVTVAST-VTS---------IGDGAFA-DT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPGA-TTEI 127 (379)
T ss_dssp TTTTTTCTTCCEEEECTT-CCE---------ECTTTTT-TC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCTT-CCEE
T ss_pred HHHhhCCCCCCEEEeCCc-ceE---------echhhhc-CC-CCceEECCce-eeEeccceeccCCcccccCCCc-cccc
Confidence 345777889999999754 322 2223332 22 5777777543 5544443323347888888754 3334
Q ss_pred Ccccc-CccchhhhhhcCCCCCCCCCccCCCCCCCcEEeccCCCCc----------------------------------
Q psy3966 95 PQAIT-NFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE---------------------------------- 139 (392)
Q Consensus 95 ~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------------- 139 (392)
....+ ...++.+.+..+-.. .-...+..+..++.+.+..+...
T Consensus 128 ~~~~F~~~~l~~~~~~~~v~~--i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (379)
T 4h09_A 128 GNYIFYNSSVKRIVIPKSVTT--IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV 205 (379)
T ss_dssp CTTTTTTCCCCEEEECTTCCE--ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC
T ss_pred cccccccceeeeeeccceeec--cccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce
Confidence 33333 334443333222111 11233444455555444332211
Q ss_pred --ccCccccCCcCCcEEECCCCCCCcC-chhhcCCCCccEEEccCCCCcccc-hhhcCCcCCCEEEccCCCCCCcch-hh
Q psy3966 140 --QFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA-SI 214 (392)
Q Consensus 140 --~l~~~l~~l~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l 214 (392)
.....+....+++.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+. .++.++.+|+.+.+..+ ++.++. .+
T Consensus 206 ~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 206 KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 11112233556666666544 3333 345677889999998765 66664 46788899999998654 666654 68
Q ss_pred hCCcccceeeccCCcCCCCChhhHhhhcccccCcEEEccCCCCCCCCc-cccCCCCCCEEeCcCC
Q psy3966 215 SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-EIITLKCLSELSLRDN 278 (392)
Q Consensus 215 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~N 278 (392)
..+++|+.+.+.++.++.++...+. .+.+|+.+.+..+ ++.|.. .+.+|.+|+.+.+..+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~---~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFM---DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTT---TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccceehhhhhc---CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8899999999999888888776554 2358999999754 777765 5667899999888654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=1.5e-05 Score=65.62 Aligned_cols=79 Identities=10% Similarity=0.139 Sum_probs=41.9
Q ss_pred CCcEEECCCCCCCcC-chhhcCCCCccEEEccCCC-Cccc-chhhcCC----cCCCEEEccCCC-CCCc-chhhhCCccc
Q psy3966 150 TLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNS-LTDI-PDTFGDL----YQLEALILSDNQ-LESL-PASISNLKML 220 (392)
Q Consensus 150 ~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~n~-l~~l-~~~l~~l----~~L~~L~L~~n~-l~~l-~~~l~~l~~L 220 (392)
.|++||++++.++.. -..+..+++|++|++++|. ++.- -..++.+ ++|++|+|++|. |++- -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 456666666655521 1334556666666666663 4411 1223332 356777776663 5521 1234556677
Q ss_pred ceeeccCC
Q psy3966 221 KSLLLHNN 228 (392)
Q Consensus 221 ~~L~L~~n 228 (392)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 77777766
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.1e-05 Score=66.39 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=46.9
Q ss_pred cCCCEEEccCCCCCCc-chhhhCCcccceeeccCCc-CCCCChhhHhhhc---ccccCcEEEccCCC-CCC-CCccccCC
Q psy3966 195 YQLEALILSDNQLESL-PASISNLKMLKSLLLHNNK-LRTLPTEIITLKC---LSEKLKSLLLHNNK-LRT-LPTEIITL 267 (392)
Q Consensus 195 ~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~---~~~~L~~L~l~~n~-l~~-l~~~l~~l 267 (392)
..|++||++++.|+.. -..+..+++|++|+|++|. +++- .+..+.. ..++|++|++++|. ||. --..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 3566666666666521 1234566677777777763 5421 1222221 12367777777764 652 11345567
Q ss_pred CCCCEEeCcCCC
Q psy3966 268 KCLSELSLRDNP 279 (392)
Q Consensus 268 ~~L~~L~l~~N~ 279 (392)
++|++|++++++
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888888875
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.25 E-value=0.00037 Score=54.41 Aligned_cols=56 Identities=27% Similarity=0.339 Sum_probs=44.2
Q ss_pred ceeeccCCcCC--CCChhhHhhhcccccCcEEEccCCCCCCCCcc-ccCCCCCCEEeCcCCCCcc
Q psy3966 221 KSLLLHNNKLR--TLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE-IITLKCLSELSLRDNPLVI 282 (392)
Q Consensus 221 ~~L~L~~n~l~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~N~l~~ 282 (392)
..++.+++.++ .+|..+ +++|+.|+|++|+|+.+|.. +..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 46778888887 777543 24789999999999988765 4558899999999999864
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.92 E-value=0.0015 Score=50.92 Aligned_cols=54 Identities=30% Similarity=0.509 Sum_probs=31.6
Q ss_pred EEEccCCCCc--ccchhhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccCCcCC
Q psy3966 176 VLSLGGNSLT--DIPDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLR 231 (392)
Q Consensus 176 ~L~l~~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~n~l~ 231 (392)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.++. .|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555556555 555432 2256666666666666654 3556666666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.04 E-value=68 Score=22.81 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=17.7
Q ss_pred hhcCCcCCCEEEccCCCCCCcch-hhhCCcccceeeccC
Q psy3966 190 TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHN 227 (392)
Q Consensus 190 ~l~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~L~~ 227 (392)
+|.++.+|+.+.+..+ ++.+.. +|..+.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4555555555555442 333322 455555555555543
Done!