RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3966
(392 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 76.5 bits (188), Expect = 2e-15
Identities = 81/236 (34%), Positives = 112/236 (47%), Gaps = 9/236 (3%)
Query: 40 ATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT 99
+ I L ++ + +L L N L + TNL SLDL NN IT +P I
Sbjct: 77 PSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIG 136
Query: 100 NFP--LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLG 157
L L +N ESLP + NL NLK +LS N L P + ++ L L L
Sbjct: 137 LLKSNLKELDLSDN--KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194
Query: 158 NNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217
N ++ +P EI L L L L NS+ ++ + +L L L LS+N+LE LP SI NL
Sbjct: 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254
Query: 218 KMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSEL 273
L++L L NN++ + I +L L+ L+ L L N L I L L EL
Sbjct: 255 SNLETLDLSNNQI----SSISSLGSLT-NLRELDLSGNSLSNALPLIALLLLLLEL 305
Score = 73.1 bits (179), Expect = 4e-14
Identities = 86/280 (30%), Positives = 129/280 (46%), Gaps = 7/280 (2%)
Query: 7 SSSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPE--NIDTLLLY 64
S S S D S +S + +L ++ ++ E N+ +L L
Sbjct: 65 SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLD 124
Query: 65 HNNLSFFPDNASKFT-NLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDM 122
+NN++ P NL+ LDLS+N+I LP + N P L L N L+ LPK +
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS--DLPKLL 182
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGN 182
SNL NL +LSGN++ P +I + L+ L L NNS+ + ++ L L L L N
Sbjct: 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242
Query: 183 SLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKC 242
L D+P++ G+L LE L LS+NQ+ S+ S+ +L L+ L L N L I L
Sbjct: 243 KLEDLPESIGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLSNALPLIALLLL 301
Query: 243 LSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282
L E L +LLL L I+ + +P +
Sbjct: 302 LLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341
Score = 57.7 bits (139), Expect = 4e-09
Identities = 62/174 (35%), Positives = 86/174 (49%), Gaps = 5/174 (2%)
Query: 109 RNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI 168
+ T LP +S L +L + + SG +L++ L L L N L E+
Sbjct: 53 NLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISEL 112
Query: 169 NKLCKLHVLSLGGNSLTDIPDTFGDL-YQLEALILSDNQLESLPASISNLKMLKSLLLHN 227
+L L L L N++TDIP G L L+ L LSDN++ESLP+ + NL LK+L L
Sbjct: 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172
Query: 228 NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281
N L LP + L L+ L L NK+ LP EI L L EL L +N ++
Sbjct: 173 NDLSDLPKLLSNLSNLNN----LDLSGNKISDLPPEIELLSALEELDLSNNSII 222
Score = 43.8 bits (103), Expect = 1e-04
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 7/165 (4%)
Query: 152 KYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP 211
L L +N+L +P +++L L +LS G S D + +L L +L L+ N+L S
Sbjct: 50 LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109
Query: 212 ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLS-EKLKSLLLHNNKLRTLPTEIITLKCL 270
+ + L L SL L NN + T+I L L LK L L +NK+ +LP+ + L L
Sbjct: 110 SELLELTNLTSLDLDNNNI----TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165
Query: 271 SELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEHL 315
L L N L + + +L L K+ ++ E L
Sbjct: 166 KNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEIELL 208
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 77.1 bits (189), Expect = 3e-15
Identities = 80/259 (30%), Positives = 118/259 (45%), Gaps = 49/259 (18%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P +I TL++ NNL+ P + LR+L++S N++T LP L I N L
Sbjct: 221 PAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGL-LELSIFSNPLTH 276
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
+LP S L L +F GNQL P+ P L+ L + +N L +P ++LCKL
Sbjct: 277 LPALP---SGLCKLWIF---GNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKL 327
Query: 175 -----------------HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217
LS+ N L +P +LY+L A +N+L SLPA S L
Sbjct: 328 WAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAY---NNRLTSLPALPSGL 384
Query: 218 KMLKSLLLHNNKLRTLP-------------TEIITLKCLSEKLKSLLLHNNKLRTLPTEI 264
K L++ N+L +LP + +L L L SL ++ N+L LP +
Sbjct: 385 K---ELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESL 441
Query: 265 ITLKCLSELSLRDNPLVIR 283
I L + ++L NPL R
Sbjct: 442 IHLSSETTVNLEGNPLSER 460
Score = 73.7 bits (180), Expect = 4e-14
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 31/191 (16%)
Query: 84 LDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI 143
L++ + +T LP + + +I NNL + +LP + L+ +SGNQL P+
Sbjct: 206 LNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPE------LRTLEVSGNQLTSLPV 259
Query: 144 QILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203
P L L + +N L H+P + LCKL + GN LT +P L +L +S
Sbjct: 260 LP---PGLLELSIFSNPLTHLPALPSGLCKLWIF---GNQLTSLPVLPPGLQELS---VS 310
Query: 204 DNQLESLPASISNLKMLKSLLLHNNKLRTLPT-------------EIITLKCLSEKLKSL 250
DNQL SLPA S L L + +NN+L +LPT ++ +L L +L L
Sbjct: 311 DNQLASLPALPSELCKLWA---YNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKL 367
Query: 251 LLHNNKLRTLP 261
+NN+L +LP
Sbjct: 368 WAYNNRLTSLP 378
Score = 36.3 bits (83), Expect = 0.025
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P + L++ N L+ P S+ L+ L +S NR+T LP + LS + RN L
Sbjct: 381 PSGLKELIVSGNRLTSLPVLPSE---LKELMVSGNRLTSLPMLPSGL-LSLSVYRNQL-- 434
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL 146
LP+ + +L + NL GN L + +Q L
Sbjct: 435 -TRLPESLIHLSSETTVNLEGNPLSERTLQAL 465
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 71.8 bits (176), Expect = 2e-13
Identities = 72/229 (31%), Positives = 104/229 (45%), Gaps = 33/229 (14%)
Query: 58 IDTLLLYHNNLSF-FPDNASKFT-NLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
I T+ L +N LS PD+ + +LR L+LSNN T + L TL NN+L+
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG 154
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
E +P D+ + +LKV +L GN L + +P + L L
Sbjct: 155 E-IPNDIGSFSSLKVLDLGGNVL----------------------VGKIPNSLTNLTSLE 191
Query: 176 VLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSL-LLHNNKLRT 232
L+L N L IP G + L+ + L N L +P I L L L L++NN
Sbjct: 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPL 280
+P+ + LK L+ L L+ NKL +P I +L+ L L L DN L
Sbjct: 252 IPSSLGNLK----NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296
Score = 65.6 bits (160), Expect = 2e-11
Identities = 87/278 (31%), Positives = 130/278 (46%), Gaps = 29/278 (10%)
Query: 26 TLDFSYSSLDSET--LATQIE------LLPNNDYNKKPENIDTL------LLYHNNLSF- 70
+LD S +SL E L Q++ L NN K P + +L L+ N S
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347
Query: 71 FPDNASKFTNLRSLDLSNNRIT-HLPQAITNF-PLSTLIARNNLLTAESLPKDMSNLKNL 128
P N K NL LDLS N +T +P+ + + L LI +N L E +PK + ++L
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE-IPKSLGACRSL 406
Query: 129 KVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKLHVLSLGGNSLT- 185
+ L N + P + +P + +L + NN+L + + L +LSL N
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466
Query: 186 DIPDTFGDLYQLEALILSDNQL-ESLPASISNLKMLKSLLLHNNKLR-TLPTEIITLKCL 243
+PD+FG +LE L LS NQ ++P + +L L L L NKL +P E+ + K
Sbjct: 467 GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-- 523
Query: 244 SEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPL 280
KL SL L +N+L +P + LS+L L N L
Sbjct: 524 --KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Score = 60.2 bits (146), Expect = 1e-09
Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 57 NIDTLLLYHNNLSF-FPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
N+ L LY N LS P + L SLDLS +N L+
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS----------------------DNSLSG 298
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCK 173
E +P+ + L+NL++ +L N + P+ + +P L+ L L +N + +P+ + K
Sbjct: 299 E-IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357
Query: 174 LHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLES-LPASISNLKMLKSLLLHNNKLR 231
L VL L N+LT +IP+ L LIL N LE +P S+ + L+ + L +N
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417
Query: 232 -TLPTEIITL 240
LP+E L
Sbjct: 418 GELPSEFTKL 427
Score = 39.1 bits (91), Expect = 0.004
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 17 DSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNA 75
DSF + ++ LD S + S + ++ L + L L N LS PD
Sbjct: 470 DSFGSKRLENLDLSRNQF-SGAVPRKLGSLSE---------LMQLKLSENKLSGEIPDEL 519
Query: 76 SKFTNLRSLDLSNNRIT-HLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133
S L SLDLS+N+++ +P + + P LS L N L+ E +PK++ N+++L N+
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-IPKNLGNVESLVQVNI 578
Query: 134 SGNQL 138
S N L
Sbjct: 579 SHNHL 583
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 67.4 bits (164), Expect = 4e-12
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 25/209 (11%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
PE I TL+L +N L P+N N+++L ++N++T +P + + ++ N +
Sbjct: 198 PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITE 255
Query: 115 -AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLC 172
E LP S L++L +F+ N++ P + + L+YL + +NS+ +P + + +
Sbjct: 256 LPERLP---SALQSLDLFH---NKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPSGIT 307
Query: 173 KLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
L+V S NSLT +P+T L+ L +N L SLPAS+ L+ L + N++
Sbjct: 308 HLNVQS---NSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV 360
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLRTLP 261
LP + L + +L + N L LP
Sbjct: 361 LP------ETLPPTITTLDVSRNALTNLP 383
Score = 56.2 bits (135), Expect = 1e-08
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 48/234 (20%)
Query: 23 SIKTLDFSYSSLDS--ETLATQIEL--LPNNDYNKKPENI----DTLLLYHNNLSFFPDN 74
+IKTL + + L S TL I+ L N + PE + +L L+HN +S P+N
Sbjct: 221 NIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPEN 280
Query: 75 ASKFTNLRSLDLSNNRIT----HLPQAITNF----------------PLSTLIARNNLLT 114
+ LR L + +N I HLP IT+ L TL A N LT
Sbjct: 281 LPE--ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT 338
Query: 115 A--ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLC 172
+ SLP + L+V ++S NQ+ P + PT+ L + N+L ++P N
Sbjct: 339 SLPASLPPE------LQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPE--NLPA 388
Query: 173 KLHVLSLGGNSLTDIPDTF----GDLYQLEALILSDNQLESLPASISNLKMLKS 222
L ++ N+L +P++ G+ Q +I+ N +I N++ L S
Sbjct: 389 ALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE--RTIQNMQRLMS 440
Score = 46.6 bits (110), Expect = 1e-05
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 14/127 (11%)
Query: 154 LYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPAS 213
L L NN L +P + + L N LT IP T D ++ + LS N++ LP
Sbjct: 204 LILDNNELKSLPENLQG--NIKTLYANSNQLTSIPATLPD--TIQEMELSINRITELPER 259
Query: 214 ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSEL 273
+ + L+SL L +NK+ LP + L E+L+ L +++N +RTLP + + ++ L
Sbjct: 260 LPS--ALQSLDLFHNKISCLP------ENLPEELRYLSVYDNSIRTLPAHLPS--GITHL 309
Query: 274 SLRDNPL 280
+++ N L
Sbjct: 310 NVQSNSL 316
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 54.1 bits (130), Expect = 7e-08
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 118 LPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKLH 175
+P D+S L++L+ NLSGN + P + I +L+ L L NS N +P + +L L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 176 VLSLGGNSLT-DIPDTFG 192
+L+L GNSL+ +P G
Sbjct: 494 ILNLNGNSLSGRVPAALG 511
Score = 49.0 bits (117), Expect = 2e-06
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 154 LYLGNNSLN-HVPREINKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SL 210
L L N L +P +I+KL L ++L GNS+ +IP + G + LE L LS N S+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 211 PASISNLKMLKSLLLHNNKL 230
P S+ L L+ L L+ N L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502
Score = 42.9 bits (101), Expect = 2e-04
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 58 IDTLLLYHNNL-SFFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFP-LSTLIARNNLLT 114
ID L L + L F P++ SK +L+S++LS N I ++P ++ + L L N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 115 AESLPKDMSNLKNLKVFNLSGNQL 138
S+P+ + L +L++ NL+GN L
Sbjct: 480 G-SIPESLGQLTSLRILNLNGNSL 502
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 49.3 bits (118), Expect = 1e-06
Identities = 52/186 (27%), Positives = 72/186 (38%), Gaps = 28/186 (15%)
Query: 72 PDNASKFTNLRSLDLSNNRIT----HLPQAIT-NFPLSTLIARNNLLTAESLPKDMSNLK 126
+K L+ LDLS+N + + +++ + L L NN L L LK
Sbjct: 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133
Query: 127 ----NLKVFNLSGNQLEQFPIQIL-----DIPTLKYLYLGNNSLN-----HVPREINKLC 172
L+ L N+LE + L LK L L NN + + + C
Sbjct: 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193
Query: 173 KLHVLSLGGNSLTD-----IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHN 227
L VL L N LTD + +T L LE L L DN L A+ + +LL N
Sbjct: 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA----ALASALLSPN 249
Query: 228 NKLRTL 233
L TL
Sbjct: 250 ISLLTL 255
Score = 28.9 bits (65), Expect = 5.4
Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 78 FTNLRSLDLSNNRITHLPQAI------TNFPLSTLIARNNLLT-------AESLPKDMSN 124
NL LDL+NN +T + + L L +N LT A +L +
Sbjct: 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251
Query: 125 LKNLKVFNLSGNQLEQFPIQIL-----DIPTLKYLYLGNNSLN 162
L L +LS N + + L + +L L L N
Sbjct: 252 LLTL---SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 44.8 bits (107), Expect = 1e-06
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 173 KLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKL 230
L L L N LT IPD F L L+ L LS N L S+ + S L L+SL L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 37.1 bits (87), Expect = 7e-04
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 24/83 (28%)
Query: 80 NLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139
NL+SLDLSNNR+T +P L NLKV +LSGN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFK-----------------------GLPNLKVLDLSGNNLT 37
Query: 140 QFPIQIL-DIPTLKYLYLGNNSL 161
+ +P+L+ L L N+L
Sbjct: 38 SISPEAFSGLPSLRSLDLSGNNL 60
Score = 35.6 bits (83), Expect = 0.002
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 196 QLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254
L++L LS+N+L +P L LK L L N L ++ E L L+SL L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE--AFSGLP-SLRSLDLSG 57
Query: 255 NKL 257
N L
Sbjct: 58 NNL 60
Score = 34.8 bits (81), Expect = 0.004
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 220 LKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDN 278
LKSL L NN+L +P K L LK L L N L ++ E + L L L L N
Sbjct: 2 LKSLDLSNNRLTVIPDG--AFKGLP-NLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Query: 279 PL 280
L
Sbjct: 59 NL 60
Score = 32.1 bits (74), Expect = 0.038
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 24/83 (28%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
N+ +L L +N L+ PD A NL+ LDLS N +T +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-------------------- 40
Query: 116 ESLPKDMSNLKNLKVFNLSGNQL 138
P+ S L +L+ +LSGN L
Sbjct: 41 ---PEAFSGLPSLRSLDLSGNNL 60
Score = 31.4 bits (72), Expect = 0.094
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 23/82 (28%)
Query: 127 NLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLT 185
NLK +LS N+L P +P LK L L N+L +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSIS-------------------- 40
Query: 186 DIPDTFGDLYQLEALILSDNQL 207
P+ F L L +L LS N L
Sbjct: 41 --PEAFSGLPSLRSLDLSGNNL 60
Score = 30.6 bits (70), Expect = 0.17
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 53 KKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRI 91
K N+ L L NNL+ A S +LRSLDLS N +
Sbjct: 21 KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 49.1 bits (117), Expect = 3e-06
Identities = 68/245 (27%), Positives = 104/245 (42%), Gaps = 50/245 (20%)
Query: 67 NLSFFPDNASKFTNLRSLDLSN-NRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNL 125
NL PD S TNL +L LS+ + + LP +I + + E LP + NL
Sbjct: 646 NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703
Query: 126 KNLKVFNLSG-NQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREIN-------KLCKLHV 176
K+L NLSG ++L+ FP DI T + +L L ++ P + LC++
Sbjct: 704 KSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS 759
Query: 177 LSLGGN------------------------SLTDIPDTFGDLYQLEAL-ILSDNQLESLP 211
L SL ++P + +L++LE L I + LE+LP
Sbjct: 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819
Query: 212 ASISNLKMLKSL-LLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCL 270
I NL+ L+SL L ++LRT P +S + L L + +P I L
Sbjct: 820 TGI-NLESLESLDLSGCSRLRTFPD-------ISTNISDLNLSRTGIEEVPWWIEKFSNL 871
Query: 271 SELSL 275
S L +
Sbjct: 872 SFLDM 876
Score = 46.4 bits (110), Expect = 2e-05
Identities = 73/276 (26%), Positives = 111/276 (40%), Gaps = 46/276 (16%)
Query: 52 NKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNN 111
N +PEN+ L + + L D T LR++DL ++ + I + ++T +
Sbjct: 607 NFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL---KEIPDLSMATNLETLK 663
Query: 112 LLTAESL---PKDMSNLKNLKVFNLSG-NQLEQFPIQI-------------------LDI 148
L SL P + L L+ ++S LE P I DI
Sbjct: 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI 723
Query: 149 PT-LKYLYLGNNSLNHVPRE--INKLCKLHVLSLGGNSLTDIPDTFGDL-----YQLEAL 200
T + +L L ++ P + L +L + + L + L L L
Sbjct: 724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783
Query: 201 ILSDNQ-LESLPASISNLKMLKSLLLHNNK-LRTLPTEIITLKCLSEKLKSL-LLHNNKL 257
LSD L LP+SI NL L+ L + N L TLPT I E L+SL L ++L
Sbjct: 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL-----ESLESLDLSGCSRL 838
Query: 258 RTLP---TEIITLKCLSELSLRDNPLVIRFVSDMTY 290
RT P T I L LS + + P I S++++
Sbjct: 839 RTFPDISTNISDLN-LSRTGIEEVPWWIEKFSNLSF 873
Score = 41.0 bits (96), Expect = 0.001
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 20/176 (11%)
Query: 41 TQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFT--------NLRSLDLSNN-RI 91
T IE P+N + EN+D L+L + T +L L LS+ +
Sbjct: 735 TAIEEFPSN---LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791
Query: 92 THLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG-NQLEQFPIQILDIPT 150
LP +I N + N + E+LP + NL++L+ +LSG ++L FP DI T
Sbjct: 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP----DIST 846
Query: 151 -LKYLYLGNNSLNHVPREINKLCKLHVLSLGG-NSLTDIPDTFGDLYQLEALILSD 204
+ L L + VP I K L L + G N+L + L LE + SD
Sbjct: 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 32.5 bits (75), Expect = 0.021
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 149 PTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP 188
L+ L L NN + +P ++ L L L L GN +TD+
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 32.1 bits (74), Expect = 0.035
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
LE L LS+NQ+ LP +SNL L++L L NK+ L
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39
Score = 31.7 bits (73), Expect = 0.045
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA 212
L L L N +TD+P +L LE L LS N++ L
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.11
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP 95
N++TL L +N ++ P S NL +LDLS N+IT L
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 30.2 bits (69), Expect = 0.15
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 25/64 (39%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
TNL +LDLSNN+IT LP +SNL NL+ +LSGN++
Sbjct: 1 TNLETLDLSNNQITDLP-------------------------PLSNLPNLETLDLSGNKI 35
Query: 139 EQFP 142
Sbjct: 36 TDLS 39
Score = 28.6 bits (65), Expect = 0.58
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 126 KNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP 165
NL+ +LS NQ+ P + ++P L+ L L N + +
Sbjct: 1 TNLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 27.1 bits (61), Expect = 2.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 246 KLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L++L L NN++ LP + L L L L N +
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKI 35
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 31.6 bits (73), Expect = 0.037
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 79 TNLRSLDLSNNRITHLPQAI 98
NLR LDLSNN+++ LP
Sbjct: 2 PNLRELDLSNNQLSSLPPGA 21
Score = 26.2 bits (59), Expect = 2.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 194 LYQLEALILSDNQLESLPASI 214
L L L LS+NQL SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 3.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 217 LKMLKSLLLHNNKLRTLPTEI 237
L L+ L L NN+L +LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.0 bits (56), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 246 KLKSLLLHNNKLRTLPTEI 264
L+ L L NN+L +LP
Sbjct: 3 NLRELDLSNNQLSSLPPGA 21
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most
populated) subfamily.
Length = 24
Score = 31.6 bits (73), Expect = 0.037
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 79 TNLRSLDLSNNRITHLPQAI 98
NLR LDLSNN+++ LP
Sbjct: 2 PNLRELDLSNNQLSSLPPGA 21
Score = 26.2 bits (59), Expect = 2.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 194 LYQLEALILSDNQLESLPASI 214
L L L LS+NQL SLP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.8 bits (58), Expect = 3.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 217 LKMLKSLLLHNNKLRTLPTEI 237
L L+ L L NN+L +LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 25.0 bits (56), Expect = 6.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 246 KLKSLLLHNNKLRTLPTEI 264
L+ L L NN+L +LP
Sbjct: 3 NLRELDLSNNQLSSLPPGA 21
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 33.0 bits (76), Expect = 0.24
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 243 LSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRD 277
+S+KL L+ NK RTL LK S L LRD
Sbjct: 128 VSKKLARALVDLNKARTLGQR---LKLFSRLRLRD 159
>gnl|CDD|131745 TIGR02698, CopY_TcrY, copper transport repressor, CopY/TcrY family.
This family includes metal-fist type transcriptional
repressors of copper transport systems such as copYZAB
of Enterococcus hirae and tcrYAZB (transferble copper
resistance) of an Enterocuccus faecium plasmid. High
levels of copper can displace zinc and prevent binding
by the repressor, activating efflux by copper resistance
transporters. The most closely related proteins excluded
by this model are antibiotic resistance regulators
including the methicillin resistance regulatory protein
MecI [Transport and binding proteins, Cations and iron
carrying compounds, Regulatory functions, DNA
interactions].
Length = 130
Score = 30.1 bits (68), Expect = 0.79
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 169 NKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILS 203
+++C V ++ + + + P + D+ +LE L+
Sbjct: 82 SRICSRKVGAVIADLIEESPLSQTDIEKLEKLLSE 116
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may not
find all Leucine Rich Repeats in a protein. Leucine Rich
Repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 22
Score = 26.8 bits (60), Expect = 1.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 80 NLRSLDLSNNRITHLPQAITNF 101
NL LDLSNN ++ LP ++ N
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|173878 cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding
component of ABC-type thermophilic oligopeptide-binding
protein Hb8-like import systems, contains the type 2
periplasmic binding fold. This family includes the
substrate-binding domain of an ABC-type
oligopeptide-binding protein Hb8 from Thermus
thermophilius and its closest homologs from other
bacteria. The structural topology of this
substrate-binding domain is similar to those of DppA
from Escherichia coli and OppA from Salmonella
typhimurium, and thus belongs to the type 2 periplasmic
binding fold protein (PBP2) superfamily. The DppA binds
dipeptides and some tripeptides and is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 amino acid
residues) and plays a role in recycling of cell wall
peptides, which precludes any involvement in chemotaxis.
The type 2 periplasmic binding proteins are soluble
ligand-binding components of ABC or tripartite
ATP-independent transporters and chemotaxis systems.
Members of the PBP2 superfamily function in uptake of a
variety of metabolites in bacteria such as amino acids,
carbohydrate, ions, and polyamines. Ligands are then
transported across the cytoplasmic membrane energized by
ATP hydrolysis or electrochemical ion gradient. Besides
transport proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 482
Score = 30.3 bits (69), Expect = 2.1
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 34 LDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRS 83
L+ IEL+ N +Y ID + L PD + LRS
Sbjct: 166 LEEFVPGDSIELVRNPNYWGGKPYIDRV-----VLKGVPDTDAARAALRS 210
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 29.5 bits (67), Expect = 2.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
Query: 156 LGNNSLNHVP-REINKLCKL-HVL--SLGGNSLT 185
L N +H+P R+ KL +L SLGGNS T
Sbjct: 268 LAENQSSHIPYRD----SKLTRLLQDSLGGNSKT 297
>gnl|CDD|217483 pfam03305, Lipoprotein_X, Mycoplasma MG185/MG260 protein. Most of
the aligned regions in this family are found towards the
middle of the member proteins.
Length = 237
Score = 29.3 bits (66), Expect = 2.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 13 SSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLL 62
+ D +S + +K + S D +T + IEL + K +D LL
Sbjct: 184 TLDKNSLTSPEVKAFKEADKSEDPQTDSKTIELYKDKIPTDKNAGVDALL 233
>gnl|CDD|205682 pfam13504, LRR_7, Leucine rich repeat.
Length = 17
Score = 25.6 bits (57), Expect = 3.9
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 79 TNLRSLDLSNNRITHLP 95
T+LR+LDLSNNR+T LP
Sbjct: 1 TSLRTLDLSNNRLTSLP 17
>gnl|CDD|237325 PRK13267, PRK13267, archaemetzincin-like protein; Reviewed.
Length = 179
Score = 28.4 bits (64), Expect = 4.9
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 17/69 (24%)
Query: 290 YKPPSLLELASRTLK--VHEIDYSQEHLPQNLVQYLESAHHCVNPKCKGVFFDNRIEH-- 345
P R K HE+ + LE HC NP+C + F N +
Sbjct: 113 GNKPDSELFEERVRKEVTHELGH---------TLGLE---HCDNPRCV-MNFSNSVRDVD 159
Query: 346 IKFVDFCGK 354
IK +FCG
Sbjct: 160 IKEPNFCGS 168
>gnl|CDD|240476 cd12896, SPRY_PRY_TRIM65, PRY/SPRY domain in tripartite
motif-containing domain 65 (TRIM65). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM65 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). The SPRY/PRY combination is a possible
component of immune defense. This protein family has not
been characterized.
Length = 182
Score = 28.2 bits (63), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 61 LLLYHNNLSFFPDNASKFTNLRSLDLS--NNRITHLPQAITNFP 102
LL + NL+F P A+K+ L LS N R +H + P
Sbjct: 5 LLKDYRNLTFDPRTANKY-----LFLSRQNRRASHGRSSPRGVP 43
>gnl|CDD|219836 pfam08429, PLU-1, PLU-1-like protein. Sequences in this family
bear similarity to the central region of PLU-1. This is
a nuclear protein that may have a role in DNA-binding
and transcription, and is closely associated with the
malignant phenotype of breast cancer. This region is
found in various other Jumonji/ARID domain-containing
proteins (see pfam02373, pfam01388).
Length = 335
Score = 28.8 bits (65), Expect = 5.7
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLK--------CLSEKL 247
LEALI + E++P S+ NL LK +L K R T++ +L L E L
Sbjct: 234 TLEALI---KEAENIPVSLPNLAKLKEIL---QKAREWQTQVESLLEQDGRKRPKLDE-L 286
Query: 248 KSLLLHNNKLRTLPTEIITL 267
+ L+ + L P E+ L
Sbjct: 287 EELVAESEPLPVKPEELRQL 306
>gnl|CDD|173353 PTZ00057, PTZ00057, glutathione s-transferase; Provisional.
Length = 205
Score = 28.4 bits (63), Expect = 6.0
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 62 LLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKD 121
+L N+ ++F + + +L +L ++ T P ++ NFPL L A N +
Sbjct: 138 ILKKNHCNYFVGDNLTYADLAVFNLYDDIETKYPNSLKNFPL--LKAHNEFI-------- 187
Query: 122 MSNLKNLK 129
SNL N+K
Sbjct: 188 -SNLPNIK 194
>gnl|CDD|216745 pfam01861, DUF43, Protein of unknown function DUF43. This family
includes archaebacterial proteins of unknown function.
All the members are 350-400 amino acids long.
Length = 243
Score = 28.2 bits (63), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 189 DTFGDLYQLEALILSDNQLESLPASISNL 217
+ GDL E L+L D+ L SL A+++ L
Sbjct: 38 YSRGDLEGKEILVLGDDDLTSLAAALTGL 66
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 28.5 bits (64), Expect = 7.2
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 32 SSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRI 91
++ D + + ++E + E ++ L + L++ + S R
Sbjct: 21 TAPDEKQITQELEQAKAAKTPAQAEIVEAL---QSALNWLEER----------KGSLERA 67
Query: 92 THLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQI 145
Q I NFP + R L P+ + N+S + LEQ +Q+
Sbjct: 68 KQYQQVIDNFPKLSAELRQQLNNERDEPRSVPP-------NMSTDALEQEILQV 114
>gnl|CDD|177556 PHA03195, PHA03195, tegument protein VP11/12; Provisional.
Length = 746
Score = 28.4 bits (63), Expect = 8.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 2 SYNYGSSSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTL 61
+ SSSSD+S S +T I TL S S E + T L P+ + + P+ +D +
Sbjct: 523 PHQRSDSSSSDNSTCSSTETQYI-TLP-STPSPTGEVVYTNPLLGPDEEVDASPQPVDPV 580
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 28.0 bits (62), Expect = 8.8
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 11/45 (24%)
Query: 270 LSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEH 314
LS++SL+ L PPSL+ELA LK+H + E+
Sbjct: 223 LSDVSLQTLGLT----------PPSLIELAEN-LKMHGVVIPWEN 256
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,123,222
Number of extensions: 1813383
Number of successful extensions: 1820
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1690
Number of HSP's successfully gapped: 100
Length of query: 392
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 293
Effective length of database: 6,546,556
Effective search space: 1918140908
Effective search space used: 1918140908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)