RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3966
(392 letters)
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 154 bits (392), Expect = 4e-44
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 18/253 (7%)
Query: 41 TQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITN 100
++ + + L L L FPD A + ++L+ + + + LP +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125
Query: 101 FP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG-NQLEQFPIQILDIPT-------- 150
F L TL N L +LP +++L L+ ++ +L + P +
Sbjct: 126 FAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 151 -LKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSD-NQLE 208
L+ L L + +P I L L L + + L+ + L +LE L L L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 209 SLPASISNLKMLKSL-LLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITL 267
+ P LK L L + L TLP +I L L EKL L L LP+ I L
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL-EKLD--LRGCVNLSRLPSLIAQL 300
Query: 268 KCLSELSLRDNPL 280
+ + +
Sbjct: 301 PANCIILVPPHLQ 313
Score = 139 bits (352), Expect = 3e-38
Identities = 66/298 (22%), Positives = 102/298 (34%), Gaps = 46/298 (15%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP---LSTLIARNNLL 113
N + N + + + + + L R+ L
Sbjct: 34 QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173
P L +L+ + L + P + L+ L L N L +P I L +
Sbjct: 94 P--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151
Query: 174 LHVLSLGG-NSLTDIPDTFG---------DLYQLEALILSDNQLESLPASISNLKMLKSL 223
L LS+ LT++P+ L L++L L + SLPASI+NL+ LKSL
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 224 LLHNNKLRTLPTEIITLKCLSE-----------------KLKSL----LLHNNKLRTLPT 262
+ N+ L L I L L E L L + L TLP
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271
Query: 263 EIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELAS-RTLKVHEIDYSQEHLPQNL 319
+I L L +L LR + R P + +L + + V + Q L Q+
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRL-------PSLIAQLPANCIILVP--PHLQAQLDQHR 320
Score = 135 bits (341), Expect = 1e-36
Identities = 49/211 (23%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 79 TNLRSLDLSN-NRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
+ +L + ++ + N +N N ++ +G
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRHY----NADRNRWHSAWRQANSNNPQIETRTGRA 67
Query: 138 LEQFP--IQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
L+ ++ P L L + L P + +L L +++ L ++PDT
Sbjct: 68 LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFA 127
Query: 196 QLEALILSDNQLESLPASISNLKMLKSL-LLHNNKLRTLPTEIITLKCLSE-----KLKS 249
LE L L+ N L +LPASI++L L+ L + +L LP + + E L+S
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 250 LLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L L +R+LP I L+ L L +R++PL
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
Score = 134 bits (340), Expect = 1e-36
Identities = 58/220 (26%), Positives = 88/220 (40%), Gaps = 16/220 (7%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTL-IARNNLL 113
++ + + L PD +F L +L L+ N + LP +I + L L I L
Sbjct: 104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163
Query: 114 TA-------ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR 166
T + L NL+ L + P I ++ LK L + N+ L+ +
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223
Query: 167 EINKLCKLHVLSLGG-NSLTDIPDTFGDLYQLEALILSD-NQLESLPASISNLKMLKSL- 223
I+ L KL L L G +L + P FG L+ LIL D + L +LP I L L+ L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 224 LLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE 263
L L LP+ I L +L+ + L
Sbjct: 284 LRGCVNLSRLPSLIAQLP----ANCIILVPPHLQAQLDQH 319
Score = 102 bits (256), Expect = 9e-25
Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 10/167 (5%)
Query: 116 ESLPKDMSNLKNLKVFNLSG-NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
S + + G L + + + Y + + H
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQ---WQRHYNADRNRWHSAWRQANSNNP 58
Query: 175 HVLSLGGNSLTDIPDTFGDLYQ--LEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
+ + G +L D D Q AL L L P L L+ + + L
Sbjct: 59 QIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME 118
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
LP + L++L L N LR LP I +L L ELS+R P
Sbjct: 119 LPDTMQQFA----GLETLTLARNPLRALPASIASLNRLRELSIRACP 161
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 156 bits (395), Expect = 2e-42
Identities = 75/276 (27%), Positives = 106/276 (38%), Gaps = 42/276 (15%)
Query: 25 KTLDFSYSSLDS--ETLATQIELL--PNNDYNKKPENID---TLLLYHNNLSFFPDNASK 77
L+ S L + + L I L P+N+ P TL + N L+ P
Sbjct: 43 AVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPG 102
Query: 78 FTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
L + LP L L N LT SLP L+ L ++S NQ
Sbjct: 103 LLELSIFSNPLTHLPALPSG-----LCKLWIFGNQLT--SLPVLPPGLQEL---SVSDNQ 152
Query: 138 LEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQL 197
L P L L+ NN L +P + L +L + N L +P +L
Sbjct: 153 LASLPAL---PSELCKLWAYNNQLTSLPMLPSGLQELS---VSDNQLASLPTLPS---EL 203
Query: 198 EALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLS------------- 244
L +N+L SLPA S LK L++ N+L +LP LK L
Sbjct: 204 YKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLP 260
Query: 245 EKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L SL ++ N+L LP +I L + ++L NPL
Sbjct: 261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
Score = 131 bits (331), Expect = 1e-33
Identities = 58/239 (24%), Positives = 90/239 (37%), Gaps = 25/239 (10%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
Q+ LP P + L + N L+ P + L L NN++T LP +
Sbjct: 132 QLTSLPVL-----PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPMLPSG- 182
Query: 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSL 161
L L +N L SLP S L L +N N+L P LK L + N L
Sbjct: 183 -LQELSVSDNQLA--SLPTLPSELYKLWAYN---NRLTSLPALP---SGLKELIVSGNRL 233
Query: 162 NHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLK 221
+P ++L +L + GN LT +P L +L + NQL LP S+ +L
Sbjct: 234 TSLPVLPSELKELM---VSGNRLTSLPMLPS---GLLSLSVYRNQLTRLPESLIHLSSET 287
Query: 222 SLLLHNNKLRTLPTEIIT-LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
++ L N L + + + ++ + + P E L + L
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346
Score = 115 bits (289), Expect = 3e-28
Identities = 46/202 (22%), Positives = 72/202 (35%), Gaps = 48/202 (23%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
L++ + +T LP + ++ + N L
Sbjct: 40 NGNAVLNVGESGLTTLPDCL--------------------------PAHITTLVIPDNNL 73
Query: 139 EQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLE 198
P P L+ L + N L +P L +L + S L +P L
Sbjct: 74 TSLP---ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPS------GLC 124
Query: 199 ALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258
L + NQL SLP L+ L + +N+L +LP +L L +NN+L
Sbjct: 125 KLWIFGNQLTSLPVLPPG---LQELSVSDNQLASLPALP-------SELCKLWAYNNQLT 174
Query: 259 TLPTEIITLKCLSELSLRDNPL 280
+LP L+ ELS+ DN L
Sbjct: 175 SLPMLPSGLQ---ELSVSDNQL 193
Score = 46.4 bits (110), Expect = 1e-05
Identities = 12/119 (10%), Positives = 35/119 (29%), Gaps = 5/119 (4%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
++ LP P + +L +Y N L+ P++ ++ +++L N ++
Sbjct: 252 RLTSLPML-----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306
Query: 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNS 160
S ++ + + + + +N+
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365
Score = 34.9 bits (80), Expect = 0.044
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 241 KCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
CL+ L + + L TLP + ++ L + DN L
Sbjct: 36 ACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNL 73
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 144 bits (367), Expect = 3e-42
Identities = 26/157 (16%), Positives = 47/157 (29%), Gaps = 4/157 (2%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNS 183
L +L + + ++P L L + + +L + L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 184 LTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCL 243
LT + G+L + L +L L A++ L L +L L + L
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELP-- 119
Query: 244 SEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ L +L L + L S+ L
Sbjct: 120 --EKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQEL 154
Score = 144 bits (366), Expect = 4e-42
Identities = 28/192 (14%), Positives = 49/192 (25%), Gaps = 28/192 (14%)
Query: 77 KFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136
+ L +T L A+ L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAV------------------------GELPEKSKLQEIYQ 37
Query: 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQ 196
+L + + ++P L L + + +L + L LT + G+L +
Sbjct: 38 ELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPE 97
Query: 197 LEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256
L +L L A++ L L +L L + L +
Sbjct: 98 KSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELP----DQSKQQQIYQE 153
Query: 257 LRTLPTEIITLK 268
L L T L
Sbjct: 154 LTDLKTAFERLG 165
Score = 138 bits (351), Expect = 6e-40
Identities = 26/163 (15%), Positives = 45/163 (27%), Gaps = 3/163 (1%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTA 115
L + L+ + L +T L A+ P S L LT
Sbjct: 5 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT- 63
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
L + L +L + + ++P L L + + +L +
Sbjct: 64 -RLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKS 122
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLK 218
L LT + G+L +L L + L
Sbjct: 123 KLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLG 165
Score = 84.4 bits (210), Expect = 1e-19
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 192 GDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLL 251
G+L + L +L L A++ L L +L L + L + L
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELP----EKSKLQ 56
Query: 252 LHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+L L + L S+L L
Sbjct: 57 EIYQELTRLKAAVGELPEKSKLQEIYQEL 85
Score = 51.3 bits (124), Expect = 5e-08
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESL 118
L + L+ + L +T L A+ P S LT L
Sbjct: 100 KLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELT--DL 157
Query: 119 PKDMSNLKN 127
L +
Sbjct: 158 KTAFERLGH 166
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 151 bits (382), Expect = 6e-41
Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 34/247 (13%)
Query: 46 LPNNDYNKKPE--------NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQA 97
LP + N+ L L NLS PDN + L+++ N + LP+
Sbjct: 41 LPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPEL 98
Query: 98 ITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLG 157
+ L L A +N L+ +LP+ ++LK+L ++ NQL P L+Y+
Sbjct: 99 PAS--LEYLDACDNRLS--TLPELPASLKHL---DVDNNQLTMLPELP---ALLEYINAD 148
Query: 158 NNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217
NN L +P L VLS+ N LT +P+ LEAL +S N LESLPA
Sbjct: 149 NNQLTMLP---ELPTSLEVLSVRNNQLTFLPEL---PESLEALDVSTNLLESLPAVPVRN 202
Query: 218 KMLKSLL----LHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSEL 273
+ N++ +P I++L +++L +N L + E ++ +
Sbjct: 203 HHSEETEIFFRCRENRITHIPENILSLD----PTCTIILEDNPLSSRIRESLSQQTAQPD 258
Query: 274 SLRDNPL 280
Sbjct: 259 YHGPRIY 265
Score = 139 bits (352), Expect = 1e-36
Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 34/242 (14%)
Query: 60 TLLLYHNNLSFFPDNA----SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
+ ++N +S + K+ + N L + S L L+
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS- 72
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
SLP ++ + V ++ N L P +L+YL +N L+ +P L
Sbjct: 73 -SLPDNL--PPQITVLEITQNALISLPEL---PASLEYLDACDNRLSTLPELP---ASLK 123
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKML--------------- 220
L + N LT +P+ LE + +NQL LP ++L++L
Sbjct: 124 HLDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPE 180
Query: 221 --KSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDN 278
++L + N L +LP + E N++ +P I++L + L DN
Sbjct: 181 SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240
Query: 279 PL 280
PL
Sbjct: 241 PL 242
Score = 100 bits (249), Expect = 5e-23
Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 22/199 (11%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
++ LP P ++ L + +N L+ P+ L ++ NN++T LP+ T+
Sbjct: 111 RLSTLPEL-----PASLKHLDVDNNQLTMLPEL---PALLEYINADNNQLTMLPELPTS- 161
Query: 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLK----YLYLG 157
L L RNN LT LP+ +L+ L ++S N LE P + + +
Sbjct: 162 -LEVLSVRNNQLT--FLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFRCR 215
Query: 158 NNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217
N + H+P I L + L N L+ L Q A S
Sbjct: 216 ENRITHIPENILSLDPTCTIILEDNPLSSRIRES--LSQQTAQPDYHGPRIYFSMSDGQQ 273
Query: 218 KMLKSLLLHNNKLRTLPTE 236
L + P
Sbjct: 274 -NTLHRPLADAVTAWFPEN 291
Score = 35.3 bits (81), Expect = 0.029
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 209 SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLK 268
S+ I+N L +N T ++ N + L +
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLIN 59
Query: 269 CLSELSLRDNPL 280
SEL L L
Sbjct: 60 QFSELQLNRLNL 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 141 bits (358), Expect = 3e-38
Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 15/236 (6%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNN 111
N L L+ N + N+ +L L LS N I + A L+TL +N
Sbjct: 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
Query: 112 LLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLG-NNSLNHVPREI 168
LT ++P L LK L N +E P IP+L+ L LG L+++
Sbjct: 123 RLT--TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180
Query: 169 -NKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLH 226
L L L+L +L +IP L +L+ L LS N L ++ S L L+ L +
Sbjct: 181 FEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 227 NNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLV 281
++++ + L L + L +N L LP ++ T L L + L NP
Sbjct: 240 QSQIQVIERN--AFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 122 bits (307), Expect = 4e-31
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 15/222 (6%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP-QAIT 99
QI+++ N + +++ L L N++ A + NL +L+L +NR+T +P A
Sbjct: 75 QIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133
Query: 100 NFP-LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSG-NQLEQFPIQIL-DIPTLKYLY 155
L L RNN + S+P + + +L+ +L +L + L+YL
Sbjct: 134 YLSKLKELWLRNNPIE--SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191
Query: 156 LGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA-S 213
L +L +P + L KL L L GN L+ I +F L L+ L + +Q++ + +
Sbjct: 192 LAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250
Query: 214 ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255
NL+ L + L +N L LP ++ T L+ + LH+N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFT---PLHHLERIHLHHN 289
Score = 75.9 bits (187), Expect = 3e-15
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 8/134 (5%)
Query: 149 PTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207
+ +L VP I+ +L+L N + I ++F L LE L LS N +
Sbjct: 43 NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 208 ESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT 266
++ + L L +L L +N+L T+P LS KLK L L NN + ++P+
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNG--AFVYLS-KLKELWLRNNPIESIPSYAFN 157
Query: 267 -LKCLSELSLRDNP 279
+ L L L +
Sbjct: 158 RIPSLRRLDLGELK 171
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 141 bits (356), Expect = 6e-38
Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 15/236 (6%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNN 111
P N L L NN+ + +L L L N I + A L+TL +N
Sbjct: 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 112 LLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLG-NNSLNHVPREI 168
LT +P L L+ L N +E P +P+L L LG L ++
Sbjct: 134 WLT--VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 169 -NKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLH 226
L L L+LG ++ D+P L LE L +S N + S L LK L +
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250
Query: 227 NNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLV 281
N+++ + L+ L L L +N L +LP ++ T L+ L EL L NP
Sbjct: 251 NSQVSLIERN--AFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 131 bits (330), Expect = 3e-34
Identities = 54/229 (23%), Positives = 88/229 (38%), Gaps = 16/229 (6%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLTAES 117
++ LS P +N R L+L N I + + L L N +
Sbjct: 58 KVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--Q 113
Query: 118 LPKDM-SNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREI-NKLCKL 174
+ + L +L L N L P + L+ L+L NN + +P N++ L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 175 HVLSLGG-NSLTDIP-DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
L LG L I F L+ L+ L L ++ +P ++ L L+ L + N
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPE 232
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
+ + LS LK L + N+++ + L L EL+L N L
Sbjct: 233 IRPG--SFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Score = 86.0 bits (213), Expect = 1e-18
Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 127 NLKVFNLSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSL 184
+ L + P IP+ +YL L N++ + + L L VL LG NS+
Sbjct: 55 QFSKVVCTRRGLSEVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 185 TDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKC 242
I F L L L L DN L +P+ L L+ L L NN + ++P+
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY--AFNR 169
Query: 243 LSEKLKSL-LLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
+ L L L KL + L L L+L +
Sbjct: 170 VP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208
Score = 77.5 bits (191), Expect = 1e-15
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 149 PTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207
+ L+ VP+ I L+L N++ I DTF L+ LE L L N +
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 208 ESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT 266
+ + L L +L L +N L +P+ + LS KL+ L L NN + ++P+
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSG--AFEYLS-KLRELWLRNNPIESIPSYAFN 168
Query: 267 -LKCLSELSLRDN 278
+ L L L +
Sbjct: 169 RVPSLMRLDLGEL 181
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 135 bits (343), Expect = 4e-37
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 19/229 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
N+ L L N LS + FT L L+LS+N + + + L TL NN +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQ 93
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR-EINKLCK 173
++ +++ + + N + + K +YL NN + + + +
Sbjct: 94 ------ELLVGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSR 145
Query: 174 LHVLSLGGNSLTDIP--DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
+ L L N + + + LE L L N + + + LK+L L +NKL
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA 204
Query: 232 TLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ E + + + L NNKL + + + L LR N
Sbjct: 205 FMGPEFQSAA----GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249
Score = 118 bits (298), Expect = 1e-30
Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 16/224 (7%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP 119
L L N L D + LR+LDL+NN + L + + TL A NN ++ +
Sbjct: 62 LLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPS---IETLHAANNNIS--RVS 115
Query: 120 KDMSNLKNLKVFNLSGNQLEQFP-IQILDIPTLKYLYLGNNSLNHVPRE--INKLCKLHV 176
S + K L+ N++ + ++YL L N ++ V L
Sbjct: 116 C--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTE 236
L+L N + D+ +L+ L LS N+L + + + + L NNKL +
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232
Query: 237 IITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + L+ L N K ++ +
Sbjct: 233 LRFSQ----NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272
Score = 115 bits (290), Expect = 1e-29
Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 9/201 (4%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNNLLT 114
+I+TL +NN+S + +++ L+NN+IT L + L + N +
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
+ + ++ L+ NL N + Q++ LK L L +N L + E +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGV 216
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
+SL N L I LE L N K + + ++ L
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276
Query: 235 TEIITLKCLSEKLKSLLLHNN 255
+ + +L +
Sbjct: 277 GQNEEEC----TVPTLGHYGA 293
Score = 81.2 bits (201), Expect = 2e-17
Identities = 26/168 (15%), Positives = 64/168 (38%), Gaps = 7/168 (4%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
+I+ + + + ++ L L +N + F L++LDLS+N++ + +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSA 213
Query: 102 P-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNS 160
++ + RNN L + K + +NL+ F+L GN ++ + + +
Sbjct: 214 AGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 161 LNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLE 208
+ + + + C + L G + + + L +
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLP---APFADRLIALGHHHHH 316
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 131 bits (331), Expect = 3e-35
Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 15/233 (6%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAI-TNFP-LSTLIARNNLLT 114
++ L L N L P+ L+ L + N IT + +++ + + N L
Sbjct: 101 KLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 115 AESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLC 172
+ + +K L ++ + P + P+L L+L N + V L
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN 216
Query: 173 KLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
L L L NS++ + + + + L L L++N+L +P +++ K ++ + LHNN +
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276
Query: 232 TLPTEIITLKCLSEKLKSLL---LHNNKLRTL---PTEIITLKCLSELSLRDN 278
+ + + K S L +N ++ P+ + + + L +
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 127 bits (320), Expect = 9e-34
Identities = 63/273 (23%), Positives = 116/273 (42%), Gaps = 27/273 (9%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITN 100
+I + + D+ N+ TL+L +N +S A + L L LS N++ LP+ +
Sbjct: 63 KITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-- 119
Query: 101 FP-LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQ---ILDIPTLKYLY 155
L L N +T + K + + L + V L N L+ I+ + L Y+
Sbjct: 120 PKTLQELRVHENEIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 156 LGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-S 213
+ + ++ +P+ + L L L GN +T + + L L L LS N + ++ S
Sbjct: 178 IADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
Query: 214 ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT------- 266
++N L+ L L+NNKL +P + K ++ + LHNN + + +
Sbjct: 236 LANTPHLRELHLNNNKLVKVPGGLADHK----YIQVVYLHNNNISAIGSNDFCPPGYNTK 291
Query: 267 LKCLSELSLRDNPLVIRFVSDMTYKP-PSLLEL 298
S +SL NP+ + T++ +
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324
Score = 121 bits (305), Expect = 1e-31
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 21/250 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLT 114
++ + L P + + LDL NN+IT + N L TLI NN ++
Sbjct: 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 115 AESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLC 172
+ + L L+ LS NQL++ P ++ TL+ L + N + V + + N L
Sbjct: 90 --KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLN 145
Query: 173 KLHVLSLGGNSLTDI---PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNK 229
++ V+ LG N L F + +L + ++D + ++P + L L L NK
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK 203
Query: 230 LRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDM 288
+ + +LK L+ L L L N + + + L EL L +N L V
Sbjct: 204 ITKVDAA--SLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGG 258
Query: 289 TYKPPSLLEL 298
+ +
Sbjct: 259 LADHKYIQVV 268
Score = 65.4 bits (160), Expect = 4e-12
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 172 CKLHVLSLGGNSLTDIP----------------------DTFGDLYQLEALILSDNQLES 209
C L V+ L +P F +L L LIL +N++
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 210 LPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-L 267
+ + L L+ L L N+L+ LP + + + L+ L +H N++ + + L
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEK------MPKTLQELRVHENEITKVRKSVFNGL 144
Query: 268 KCLSELSLRDNPLVIRFVSDMTYKP-PSLLEL 298
+ + L NPL + + ++ L +
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 128 bits (325), Expect = 8e-35
Identities = 64/234 (27%), Positives = 91/234 (38%), Gaps = 33/234 (14%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P + L+ N +S P + NL L L +N + +
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID------------------ 72
Query: 114 TAESLPKDMSNLKNLKVFNLSGN-QLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NK 170
+ L L+ +LS N QL + L L+L L + +
Sbjct: 73 -----AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 171 LCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
L L L L N+L +PD TF DL L L L N++ S+P L L LLLH N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLV 281
++ + + L +L +L L N L LPTE + L+ L L L DNP V
Sbjct: 188 RVAHVHPH--AFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Score = 103 bits (260), Expect = 1e-25
Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 12/196 (6%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNN-RITHLP-QAI 98
+I +P + N+ L L+ N L+ A + L LDLS+N ++ +
Sbjct: 43 RISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 99 TNFP-LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLY 155
L TL L L + L L+ L N L+ P + L +L+
Sbjct: 102 HGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159
Query: 156 LGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPAS 213
L N ++ VP L L L L N + + F DL +L L L N L +LP
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 214 I-SNLKMLKSLLLHNN 228
+ L+ L+ L L++N
Sbjct: 220 ALAPLRALQYLRLNDN 235
Score = 91.6 bits (228), Expect = 3e-21
Identities = 50/229 (21%), Positives = 76/229 (33%), Gaps = 52/229 (22%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
E T L P + + L NRI+H+P
Sbjct: 10 NEPKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVP------------------- 48
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREINKLCK 173
+NL + L N L + + L+ L L +N+ +
Sbjct: 49 ----AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA------------Q 92
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRT 232
L + P TF L +L L L L+ L + L L+ L L +N L+
Sbjct: 93 LRSVD---------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
LP + T + L L L LH N++ ++P L L L L N +
Sbjct: 144 LPDD--TFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 128 bits (323), Expect = 4e-34
Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 11/225 (4%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLT 114
+ L + N+L P N ++L L + +NRI +P+ + ++ + N L
Sbjct: 103 KLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCK 173
+ L +S +L P + TL L+L +N + + E + K
Sbjct: 161 NSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218
Query: 174 LHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
L+ L LG N + I + + L L L L +N+L +PA + +LK+L+ + LH N +
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278
Query: 233 LPTEI---ITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELS 274
+ + + L NN + + T +C+++
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323
Score = 120 bits (303), Expect = 3e-31
Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 16/233 (6%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNN 111
+ L L +N++S + +L +L L NN+I+ + +A + L L N
Sbjct: 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREIN- 169
L +P ++ +L + N++ + P + + + + +G N L + E
Sbjct: 113 HLV--EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168
Query: 170 -KLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHN 227
KL+ L + LT IP L L L N+++++ + L L L +
Sbjct: 169 FDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 228 NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
N++R + +L L L+ L L NNKL +P + LK L + L N +
Sbjct: 227 NQIRMIENG--SLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276
Score = 88.9 bits (221), Expect = 5e-20
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 20/203 (9%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFT--NLRSLDLSNNRITHLPQAIT 99
+I +P ++ N++ + + N L F L L +S ++T +P+ +
Sbjct: 134 RIRKVPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL- 191
Query: 100 NFP-LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYL 156
L+ L +N + ++ + L L NQ+ L +PTL+ L+L
Sbjct: 192 -PETLNELHLDHNKIQ--AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
Query: 157 GNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLY------QLEALILSDNQLES 209
NN L+ VP + L L V+ L N++T + + F + + L +N +
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308
Query: 210 L---PASISNLKMLKSLLLHNNK 229
PA+ + ++ N K
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331
Score = 68.5 bits (168), Expect = 5e-13
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 52/217 (23%)
Query: 172 CKLHVLSLGGNSLTDIP----------------------DTFGDLYQLEALILSDNQLES 209
C L V+ L +P D F L L AL+L +N++
Sbjct: 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 210 LPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-L 267
+ + S L+ L+ L + N L +P L L L +H+N++R +P + + L
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPN------LPSSLVELRIHDNRIRKVPKGVFSGL 146
Query: 268 KCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEHLPQNLVQ-YLESA 326
+ ++ + + NPL + L L + ++ + LP+ L + +L+
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYL---RISEAKLTGIPKDLPETLNELHLD-- 201
Query: 327 HHCVNPKCKGVFFDNRIEHIKFVDFCGKYRIPLLQYL 363
N+I+ I+ D L L
Sbjct: 202 -------------HNKIQAIELEDLLR---YSKLYRL 222
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 133 bits (336), Expect = 4e-34
Identities = 69/235 (29%), Positives = 102/235 (43%), Gaps = 18/235 (7%)
Query: 57 NIDTLLLYHNNLS--FFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFP--LSTLIARNN 111
+++L L NN S D K L+ LDLS N + LP+++TN L TL +N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 112 LLTAESLPKDMSN--LKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPRE 167
+ + ++ L+ L N + P + + L L+L N L+ +P
Sbjct: 379 NFSG-PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 168 INKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLL 225
+ L KL L L N L +IP + LE LIL N L +P+ +SN L + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 226 HNNKLR-TLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDN 278
NN+L +P I L+ L L L NN +P E+ + L L L N
Sbjct: 498 SNNRLTGEIPKWIGRLE----NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 125 bits (316), Expect = 2e-31
Identities = 71/268 (26%), Positives = 109/268 (40%), Gaps = 27/268 (10%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDN--ASKFT 79
+K LD S++ E LP + N ++ TL L NN S N +
Sbjct: 344 GLKVLDLSFNEFSGE--------LPESLTNLSA-SLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 80 NLRSLDLSNNRIT-HLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
L+ L L NN T +P ++N L +L N L+ +P + +L L+ L N
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNM 453
Query: 138 LE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKLHVLSLGGNSLTD-IPDTFGDL 194
LE + P +++ + TL+ L L N L +P ++ L+ +SL N LT IP G L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 195 YQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITLKCLSEKLKSLLL 252
L L LS+N ++PA + + + L L L+ N T+P + K +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-------KQSGKIA 566
Query: 253 HNNKLRTLPTEIITLKCLSELSLRDNPL 280
N I E N L
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Score = 121 bits (306), Expect = 4e-30
Identities = 60/291 (20%), Positives = 104/291 (35%), Gaps = 44/291 (15%)
Query: 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-FFPDNASKFT 79
+ S+ TLD S ++ + N + L L +N + P S +
Sbjct: 367 SASLLTLDLSSNNFSGP--------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 80 NLRSLDLSNNRIT-HLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
L SL LS N ++ +P ++ + L L N+L E +P+++ +K L+ L N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETLILDFND 477
Query: 138 LE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKLHVLSLGGNSLT-DIPDTFGDL 194
L + P + + L ++ L NN L +P+ I +L L +L L NS + +IP GD
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 195 YQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITLKCLSE------- 245
L L L+ N ++PA++ S + N + I E
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 246 ---------------KLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPL 280
+ + + L + N L
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Score = 118 bits (299), Expect = 3e-29
Identities = 72/289 (24%), Positives = 110/289 (38%), Gaps = 30/289 (10%)
Query: 2 SYNYGSSSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTL 61
S N S K S++ LD S +S+ + + + L
Sbjct: 134 SSNTLDFPGKVSG---GLKLNSLEVLDLSANSISGA-------NVVGWVLSDGCGELKHL 183
Query: 62 LLYHNNLS-FFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLP 119
+ N +S S+ NL LD+S+N + + + L L N L+
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFS 240
Query: 120 KDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREI-NKLCKLHV 176
+ +S LK+ N+S NQ P L +L+YL L N +P + L
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 177 LSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPA-SISNLKMLKSLLLHNNKLR-T 232
L L GN +P FG LE+L LS N LP ++ ++ LK L L N+
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEI--ITLKCLSELSLRDN 278
LP + LS L +L L +N + + L EL L++N
Sbjct: 359 LPESLTN---LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Score = 110 bits (277), Expect = 2e-26
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 23/236 (9%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT---HLPQAITNFP-LSTLIARNNL 112
+++L L +++++ +L SLDLS N ++ ++ + L L +N
Sbjct: 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137
Query: 113 LTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILD---IPTLKYLYLGNNSLN-HVPRE 167
L L +L+V +LS N + + + LK+L + N ++ V
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-- 195
Query: 168 INKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLL 225
+++ L L + N+ + IP GD L+ L +S N+L +IS LK L +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 226 HNNKLR-TLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIIT-LKCLSELSLRDN 278
+N+ +P + L+ L L NK +P + L+ L L N
Sbjct: 255 SSNQFVGPIPPLPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 109 bits (276), Expect = 3e-26
Identities = 50/233 (21%), Positives = 87/233 (37%), Gaps = 18/233 (7%)
Query: 60 TLLLYHNNLS-FFPDNAS--KFTNLRSLDLSNNRITHL--PQAITNFP-LSTLIARNNLL 113
+L L N+LS S + L+ L++S+N + L L N +
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163
Query: 114 TAESLP--KDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKL 171
+ ++ LK +SGN++ + + L++L + +N+ + +
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDC 222
Query: 172 CKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNK 229
L L + GN L+ D +L+ L +S NQ +P LK L+ L L NK
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280
Query: 230 LR-TLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPL 280
+P + + L L L N +P + L L+L N
Sbjct: 281 FTGEIPDFLSGA---CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Score = 94.6 bits (236), Expect = 4e-21
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 28/202 (13%)
Query: 57 NIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFPLST--------- 105
N+ L L +N+ S P +L LDL+ N +P A+
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 106 -------------LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTL 151
A N L + ++ L N++ + ++
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634
Query: 152 KYLYLGNNSLN-HVPREINKLCKLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE- 208
+L + N L+ ++P+EI + L +L+LG N ++ IPD GDL L L LS N+L+
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 209 SLPASISNLKMLKSLLLHNNKL 230
+P ++S L ML + L NN L
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNL 716
Score = 71.9 bits (177), Expect = 8e-14
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 14/173 (8%)
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN---HVPREINKLCK 173
++ + +L L+ LS + + +L L L NSL+ +
Sbjct: 68 AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127
Query: 174 LHVLSLGGNSLTDI--PDTFGDLYQLEALILSDNQLE-SLPASI---SNLKMLKSLLLHN 227
L L++ N+L L LE L LS N + + LK L +
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 228 NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
NK+ + + + L+ L + +N T + L L + N L
Sbjct: 188 NKI----SGDVDVSRCV-NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Score = 70.7 bits (174), Expect = 2e-13
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 9/157 (5%)
Query: 60 TLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRIT---HLPQAITNFP-LSTLIARNNLLT 114
+ + N ++ + + N + + + + + +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLC 172
N ++ ++S N L P +I +P L L LG+N ++ +P E+ L
Sbjct: 622 GH-TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 173 KLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE 208
L++L L N L IP L L + LS+N L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 58.0 bits (141), Expect = 3e-09
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 13/138 (9%)
Query: 154 LYLGNNSLN----HVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLE- 208
+ L + LN V + L L L L + + F L +L LS N L
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114
Query: 209 SLPA--SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEII 265
+ S+ + LK L + +N L P ++ L+ L+ L L N + +
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLN-SLEVLDLSANSISGANVVGWV 172
Query: 266 T---LKCLSELSLRDNPL 280
L L++ N +
Sbjct: 173 LSDGCGELKHLAISGNKI 190
Score = 44.1 bits (105), Expect = 7e-05
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 56 ENIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFP-LSTL-IARNN 111
++ L + +N LS + P L L+L +N I+ +P + + L+ L ++ N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLE 139
L +P+ MS L L +LS N L
Sbjct: 692 L--DGRIPQAMSALTMLTEIDLSNNNLS 717
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 132 bits (334), Expect = 4e-34
Identities = 55/249 (22%), Positives = 92/249 (36%), Gaps = 34/249 (13%)
Query: 60 TLLLYHNNLSFFPDN-ASKFTNLRSLDLSNNRITHLPQA--ITNFP-LSTLIARNNLLTA 115
+L L +N ++ P N + +L ++N++ ++P + +S + N + +
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416
Query: 116 ------ESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPR-- 166
+ L N+ NLS NQ+ +FP ++ L + L N L +P+
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476
Query: 167 ------EINKLCKLHVLSLGGNSLTDIPDTF--GDLYQLEALILSDNQLESLPASISNLK 218
L + L N LT + D F L L + LS N P N
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536
Query: 219 MLKSL-------LLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLS 271
LK N LR P I L L + +N +R + +I +S
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCP----SLTQLQIGSNDIRKVNEKI--TPNIS 590
Query: 272 ELSLRDNPL 280
L ++DNP
Sbjct: 591 VLDIKDNPN 599
Score = 131 bits (331), Expect = 1e-33
Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 44/298 (14%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENID----------TLLLYHNNLS-FF 71
++ S +E + E N++Y ++ + D + +Y+
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENE-NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265
Query: 72 PDNASKFTNLRSLDLSNNRITHLPQAITNFP----------LSTLIARNNLLTAESLPKD 121
P ++ ++++ NR Q ++ + + N L +
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325
Query: 122 MSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK-LHVLSLG 180
+ +K L + NQLE L L L N + +P + + LS
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 181 GNSLTDIPDTF--GDLYQLEALILSDNQLES--------LPASISNLKMLKSLLLHNNKL 230
N L IP+ F + + A+ S N++ S L + + S+ L NN++
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Query: 231 RTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT--------LKCLSELSLRDNPL 280
P E+ + L S+ L N L +P + L+ + LR N L
Sbjct: 446 SKFPKELFS---TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
Score = 128 bits (324), Expect = 9e-33
Identities = 40/254 (15%), Positives = 91/254 (35%), Gaps = 21/254 (8%)
Query: 61 LLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPK 120
+ NN++F + T LR + N+ ++
Sbjct: 188 IGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN----ICEAWENENSEYAQQYKTEDL 243
Query: 121 DMSNLKNLKVFNLSG-NQLEQFPIQILDIPTLKYLYLGNNSLNHVPR---------EINK 170
NLK+L + L + P + +P ++ + + N + +
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303
Query: 171 LCKLHVLSLGGNSLTD--IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNN 228
K+ ++ +G N+L + + + +L L NQLE + + L SL L N
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363
Query: 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP--TEIITLKCLSELSLRDNPLVIRFVS 286
++ +P +E++++L +NKL+ +P + ++ +S + N +
Sbjct: 364 QITEIPANFCG---FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420
Query: 287 DMTYKPPSLLELAS 300
+ P+ + +
Sbjct: 421 NFDPLDPTPFKGIN 434
Score = 122 bits (309), Expect = 9e-31
Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 36/253 (14%)
Query: 57 NIDTLLLYHNNLSFFPDN--ASKFTNLRSLDLSNNRITHLPQ-AITNFP--------LST 105
++ L HN L + P+ A + + ++D S N I + +S+
Sbjct: 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 106 LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI--------QILDIPTLKYLYLG 157
+ NN ++ + + S L NL GN L + P + L + L
Sbjct: 438 INLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 158 NNSLNHVPREI--NKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQ-------LE 208
N L + + L L + L NS + P + L+ + + + L
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556
Query: 209 SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP-TEIITL 267
P I+ L L + +N +R + +I + L + +N ++ + +
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKITP------NISVLDIKDNPNISIDLSYVCPY 610
Query: 268 KCLSELSLRDNPL 280
L +
Sbjct: 611 IEAGMYMLFYDKT 623
Score = 106 bits (267), Expect = 3e-25
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 27/232 (11%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNL 81
+ +DFSY+ + S L P N+ ++ L +N +S FP S + L
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI---NVSSINLSNNQISKFPKELFSTGSPL 459
Query: 82 RSLDLSNNRITHLPQAITNFP---------LSTLIARNNLLTAESLPKD--MSNLKNLKV 130
S++L N +T +P+ L+++ R N LT L D + L L
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRATTLPYLVG 517
Query: 131 FNLSGNQLEQFPIQILDIPTLKYLYL-------GNNSLNHVPREINKLCKLHVLSLGGNS 183
+LS N +FP Q L+ TLK + GN +L P I L L +G N
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577
Query: 184 LTDIPDTFGDLYQLEALILSDNQLESLPAS-ISNLKMLKSLLLHNNKLRTLP 234
+ + + + L + DN S+ S + +L +K + +
Sbjct: 578 IRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627
Score = 99.7 bits (249), Expect = 7e-23
Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 37/256 (14%)
Query: 60 TLLLYHNNLSF-FPDNASKFTNLRSLDLSNNRIT-----HLPQAITNFPLSTLIARNNLL 113
L L S PD + T L L L ++ P+ I+ + +
Sbjct: 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMH 144
Query: 114 TAESLPKDMSNLK--NLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLNHVPREINK 170
++ +L ++ + ++ + +N++ V + + +
Sbjct: 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMR 204
Query: 171 LCKLHVLSLGGNSLTD--------------------IPDTFGDLYQLEALILSD-NQLES 209
L KL +G + + +L L + + + L
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264
Query: 210 LPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSE-----KLKSLLLHNNKLRTL--PT 262
LP + L ++ + + N+ + + L++ K++ + + N L+T T
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324
Query: 263 EIITLKCLSELSLRDN 278
+ +K L L N
Sbjct: 325 SLQKMKKLGMLECLYN 340
Score = 85.5 bits (212), Expect = 3e-18
Identities = 25/231 (10%), Positives = 59/231 (25%), Gaps = 53/231 (22%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
+ L L + +P + L L+V L +
Sbjct: 81 GRVTGLSLEGFGASG-----------------------RVPDAIGQLTELEVLALGSHGE 117
Query: 139 E-----QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD------I 187
+ P I + + ++ + L + + I
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCINSDPQQKSI 175
Query: 188 PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL-PTEIITLKCLS-- 244
+ + + N + + ++ L L+ + N+ E +
Sbjct: 176 KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235
Query: 245 ----------EKLKSL----LLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281
+ LK L + + L LPT + L + +++ N +
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286
Score = 81.2 bits (201), Expect = 9e-17
Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 42 QIELLPNNDYNKKPENID------TLLLYHNNLSFFPDN--ASKFTNLRSLDLSNNRITH 93
+ +P N + EN ++ L N L+ D+ A+ L +DLS N +
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527
Query: 94 LPQAITNFP-LSTLIARNNLLTA-----ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD 147
P N L RN P+ ++ +L + N + + +I
Sbjct: 528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT- 586
Query: 148 IPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPD 189
P + L + +N + + + + L + DI
Sbjct: 587 -PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
Score = 65.4 bits (160), Expect = 9e-12
Identities = 26/167 (15%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKLHVLSLGG 181
+N K ++ G Q + + + L L + VP I +L +L VL+LG
Sbjct: 58 ANWNFNKELDMWGAQP---GVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS 114
Query: 182 NSLTD-----IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP-- 234
+ P E + L + + + P
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHY--QKTFVDYDPREDFSDLIKDCINSDPQQ 172
Query: 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281
I ++ K + +N + + ++ L L + + ++P V
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 130 bits (330), Expect = 4e-34
Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 15/249 (6%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP-QAIT 99
+++L+P + N+ L + N + D NL+SL++ +N + ++ +A +
Sbjct: 91 RLKLIPLGVF-TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 100 NFP-LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYL 156
L L LT S+P + S+L L V L + + LK L +
Sbjct: 150 GLNSLEQLTLEKCNLT--SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Query: 157 -GNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI 214
L+ + L LS+ +LT +P L L L LS N + ++ S+
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 215 -SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSE 272
L L+ + L +L + + L+ L+ L + N+L TL + + L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPY--AFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLET 324
Query: 273 LSLRDNPLV 281
L L NPL
Sbjct: 325 LILDSNPLA 333
Score = 130 bits (328), Expect = 7e-34
Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 16/236 (6%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNN 111
P L L N + + + F +L L+L+ N ++ + P A N L TL R+N
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 112 LLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREI- 168
L +P + + L NL ++S N++ + D+ LK L +G+N L ++
Sbjct: 91 RLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148
Query: 169 NKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLL- 225
+ L L L+L +LT IP L+ L L L + ++ L LK L +
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 226 HNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
H L T+ L L+ L SL + + L +P + L L L+L NP+
Sbjct: 209 HWPYLDTMTPNC--LYGLN--LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Score = 129 bits (326), Expect = 2e-33
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 13/228 (5%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLTAES 117
+L + P+ T R LDL NRI L Q +FP L L N+++ +
Sbjct: 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--A 70
Query: 118 LPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKL 174
+ +NL NL+ L N+L+ P+ + + L L + N + + + L L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 175 HVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRT 232
L +G N L I F L LE L L L S+P ++S+L L L L + +
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + K L + H L T+ + L+ LS+ L
Sbjct: 191 IRDY--SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Score = 122 bits (307), Expect = 7e-31
Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 24/267 (8%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNL 81
+ LD +I+ L +++ P +++ L L N +S A + NL
Sbjct: 33 ETRLLDLGK---------NRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNL 82
Query: 82 RSLDLSNNRITHLPQAI-TNFP-LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQL 138
R+L L +NR+ +P + T L+ L N + L M +L NLK + N L
Sbjct: 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV--ILLDYMFQDLYNLKSLEVGDNDL 140
Query: 139 EQFPIQIL-DIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGDLY 195
+ + +L+ L L +L +P E + L L VL L ++ I D +F LY
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 196 QLEALILSD-NQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254
+L+ L +S L+++ + L SL + + L +P ++ L L+ L L
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL--AVRHLV-YLRFLNLSY 257
Query: 255 NKLRTLPTEIIT-LKCLSELSLRDNPL 280
N + T+ ++ L L E+ L L
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQL 284
Score = 85.9 bits (213), Expect = 2e-18
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
Query: 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDI 187
+ + P I + L LG N + + ++ L L L N ++ +
Sbjct: 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 188 -PDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSE 245
P F +L+ L L L N+L+ +P + + L L L + NK+ L + L
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY--MFQDLY- 128
Query: 246 KLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
LKSL + +N L + + L L +L+L L
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 133 bits (335), Expect = 4e-34
Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 32/250 (12%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFT-NLRSLDLSNNRITHLPQAITNFPLSTLIA---RNNL 112
+ L L +N + P++ FT + L S+N++ ++P + + + N
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 113 LTAE----SLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPRE 167
+ +E S D N LS N++++FP ++ + + L NN + +P
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715
Query: 168 --------INKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESLPASISNL 217
L + L N LT + D L L + +S N S P N
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775
Query: 218 KMLKSLLL-------HNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCL 270
LK+ + N LR PT I T L L + +N +R + ++ L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCP----SLIQLQIGSNDIRKVDEKL--TPQL 829
Query: 271 SELSLRDNPL 280
L + DNP
Sbjct: 830 YILDIADNPN 839
Score = 128 bits (324), Expect = 1e-32
Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 46/261 (17%)
Query: 61 LLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTL-------------- 106
+ N ++F + T L+ + +N+ T+ A+ ++
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489
Query: 107 --------IARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE----------QFPIQILDI 148
+ +T LP + +L L+ N++ N+ +
Sbjct: 490 LKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 149 PTLKYLYLGNNSLNHVPRE--INKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQ 206
P ++ Y+G N+L P + K+ KL +L N + + FG +L L L NQ
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ 606
Query: 207 LESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEI- 264
+E +P + ++ L +NKL+ +P + S+ NK+ + I
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV--YVMGSVDFSYNKIGSEGRNIS 664
Query: 265 -----ITLKCLSELSLRDNPL 280
S ++L N +
Sbjct: 665 CSMDDYKGINASTVTLSYNEI 685
Score = 118 bits (297), Expect = 5e-29
Identities = 44/242 (18%), Positives = 86/242 (35%), Gaps = 28/242 (11%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNAS------KFTNLRSLDLSNNRITHLP 95
+++ +PN K + ++ +N + N S K N ++ LS N I P
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689
Query: 96 QAI--TNFPLSTLIARNNLLTA------ESLPKDMSNLKNLKVFNLSGNQLEQFP--IQI 145
+ T P+ST+I NNL+T+ + + N L +L N+L +
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 146 LDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNS-------LTDIPDTFGDLYQLE 198
+P L + + N + P + +L + L P L
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809
Query: 199 ALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258
L + N + + + L L + +N ++ +T C + +L +K +
Sbjct: 810 QLQIGSNDIRKVDEKL--TPQLYILDIADNPNISID---VTSVCPYIEAGMYVLLYDKTQ 864
Query: 259 TL 260
+
Sbjct: 865 DI 866
Score = 117 bits (295), Expect = 9e-29
Identities = 39/245 (15%), Positives = 77/245 (31%), Gaps = 22/245 (8%)
Query: 52 NKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNN 111
+ ++ + + + L DL + I P+ S + ++
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428
Query: 112 LLTA-----ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR 166
+ + K + L L++ + + I + +
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEEL 485
Query: 167 EINKLCKLHVLSLGGNS-LTDIPDTFGDLYQLEALILSDNQLES----------LPASIS 215
+ L L + L +T +PD DL +L++L ++ N+ S L
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545
Query: 216 NLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSL 275
++ + N L P K KL L +NK+R L T L++L L
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKM--VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602
Query: 276 RDNPL 280
N +
Sbjct: 603 DYNQI 607
Score = 111 bits (278), Expect = 1e-26
Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 38/259 (14%)
Query: 60 TLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIA--RNNLLTAE 116
L L PD + T L+ L + T + + L+ ++ R + +
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFP----IQILDIPTLKYLYLGN--NSLNHVPREINK 170
+ + L + +L + + + P I+ +LK +GN N + + + I +
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446
Query: 171 LCKLHVLSLGGNSLT--------------------DIPDTFGDLYQLEALILSD-NQLES 209
L KL ++ + T + ++ +L L + L + +
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506
Query: 210 LPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSE------KLKSLLLHNNKLRTLPTE 263
LP + +L L+SL + N+ + L++ K++ + N L P
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566
Query: 264 --IITLKCLSELSLRDNPL 280
+ + L L N +
Sbjct: 567 ASLQKMVKLGLLDCVHNKV 585
Score = 108 bits (270), Expect = 1e-25
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 26/225 (11%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNL 81
+ ++DFSY+ + SE + + + K N T+ L +N + FP + + +
Sbjct: 645 VMGSVDFSYNKIGSE-----GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 82 RSLDLSNNRITHLPQAITNFP---------LSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
++ LSNN +T +P+ L+T+ R N LT+ S + L L +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759
Query: 133 LSGNQLEQFPIQILDIPTLKYLYL-------GNNSLNHVPREINKLCKLHVLSLGGNSLT 185
+S N FP Q L+ LK + GN L P I L L +G N +
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819
Query: 186 DIPDTFGDLYQLEALILSDNQLESLP--ASISNLKMLKSLLLHNN 228
+ + QL L ++DN S+ + ++ +LL++
Sbjct: 820 KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
Score = 87.6 bits (217), Expect = 7e-19
Identities = 30/251 (11%), Positives = 67/251 (26%), Gaps = 53/251 (21%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
+ L L+ +P + L LKV + +
Sbjct: 323 GRVTGLSLAGFGAKG-----------------------RVPDAIGQLTELKVLSFGTHSE 359
Query: 139 EQFPIQILD---IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP------- 188
D P + +++ ++ +L++ L +++ P
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419
Query: 189 DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLK 248
D+ L + + N++ + +I L L+ + N+ + S+ K
Sbjct: 420 DSRISLKDTQ-IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478
Query: 249 SL-----------------LLHNNKLRTLPTEIITLKCLSELSLRDNPL--VIRFVSDMT 289
L + + LP + L L L++ N + +D T
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 290 YKPPSLLELAS 300
Sbjct: 539 RLADDEDTGPK 549
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 128 bits (323), Expect = 4e-33
Identities = 54/252 (21%), Positives = 96/252 (38%), Gaps = 17/252 (6%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
N+ L L N LS + FT L L+LS+N + + L TL NN +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ- 93
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR-EINKLCKL 174
++ +++ + + N + + K +YL NN + + + ++
Sbjct: 94 -----ELLVGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRV 146
Query: 175 HVLSLGGNSLTDIP--DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
L L N + + + LE L L N + + + LK+L L +NKL
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF 205
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKP 292
+ E + + + L NNKL + + + L LR N + D K
Sbjct: 206 MGPEFQSAA----GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
Query: 293 PSLLELASRTLK 304
+ +A +T+K
Sbjct: 262 QRVQTVAKQTVK 273
Score = 114 bits (288), Expect = 2e-28
Identities = 43/245 (17%), Positives = 77/245 (31%), Gaps = 6/245 (2%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNNLLT 114
+I+TL +NN+S + +++ L+NN+IT L + L + N +
Sbjct: 100 SIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
+ + ++ L+ NL N + Q++ LK L L +N L + E +
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGV 216
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
+SL N L I LE L N K + + ++ L
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276
Query: 235 TEIITLKCLSEKLKSLLLHNNKL-RTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPP 293
+ + L +I LK L +
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQA 336
Query: 294 SLLEL 298
E+
Sbjct: 337 RQREI 341
Score = 96.1 bits (239), Expect = 6e-22
Identities = 40/317 (12%), Positives = 98/317 (30%), Gaps = 35/317 (11%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
+I+ + + + ++ L L +N + F L++LDLS+N++ + +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSA 213
Query: 102 P-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNS 160
++ + RNN L + K + +NL+ F+L GN ++ + + +
Sbjct: 214 AGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 161 LNHVPREINKLCK------------------------------LHVLSLGGNSLTDIPDT 190
+ + + + C +LS G+ +
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331
Query: 191 FGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKS 249
+ + + Q ++ + + +L L + +
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQ 391
Query: 250 LLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEID 309
+ +L+ E L+ L + R + + S + ++ E +
Sbjct: 392 QAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEEN 451
Query: 310 YSQEHLPQNLVQYLESA 326
+ L L SA
Sbjct: 452 ARLKKLNGEADLALASA 468
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 125 bits (315), Expect = 4e-32
Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 23/233 (9%)
Query: 48 NNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLI 107
N +++ N ++ L+L+N ++ LP+ + L +L+
Sbjct: 40 YNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPH--LESLV 97
Query: 108 ARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPRE 167
A N LT LP+ +LK+L V N + L P P L+YL + NN L +P E
Sbjct: 98 ASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLP------PLLEYLGVSNNQLEKLP-E 148
Query: 168 INKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHN 227
+ L ++ + NSL +PD LE + +NQLE LP + NL L ++ N
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADN 204
Query: 228 NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
N L+ LP + L+S++ NN L LP E+ L L+ + +N L
Sbjct: 205 NSLKKLPDLPL-------SLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL 249
Score = 123 bits (312), Expect = 1e-31
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 23/226 (10%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P ++++L+ N+L+ P+ +L + + ++ LP L L NN L
Sbjct: 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL-----LEYLGVSNNQLE 144
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
LP ++ N LK+ ++ N L++ P P+L+++ GNN L +P E+ L L
Sbjct: 145 --KLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFL 197
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
+ NSL +PD LE+++ +N LE LP + NL L ++ NN L+TLP
Sbjct: 198 TAIYADNNSLKKLPD---LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLP 253
Query: 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L++L + +N L LP +L L + L
Sbjct: 254 DLP-------PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292
Score = 123 bits (310), Expect = 2e-31
Identities = 65/245 (26%), Positives = 96/245 (39%), Gaps = 26/245 (10%)
Query: 46 LPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLST 105
+ P ++ L + +N L P+ + L+ +D+ NN + LP + L
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLPEL-QNSSFLKIIDVDNNSLKKLPDLPPS--LEF 177
Query: 106 LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVP 165
+ A NN L LP ++ NL L N L++ P +L+ + GNN L +P
Sbjct: 178 IAAGNNQLE--ELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP 231
Query: 166 REINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLL 225
E+ L L + N L +PD LEAL + DN L LP +L L
Sbjct: 232 -ELQNLPFLTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSEN 287
Query: 226 HNNKLRTLPTEIITLKCLS----------EKLKSLLLHNNKLRTLPTEIITLKCLSELSL 275
+ L LP + L S L+ L + NNKL LP L+ L
Sbjct: 288 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE---RLIA 344
Query: 276 RDNPL 280
N L
Sbjct: 345 SFNHL 349
Score = 103 bits (259), Expect = 2e-24
Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 36/240 (15%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
++ LP+ P +++ L + N L+ P+ +L LD+S N + L + N
Sbjct: 248 LLKTLPD-----LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPN- 298
Query: 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSL 161
L L A +N + SL +L+ L N+S N+L + P P L+ L N L
Sbjct: 299 -LYYLNASSNEIR--SLCDLPPSLEEL---NVSNNKLIELP---ALPPRLERLIASFNHL 349
Query: 162 NHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLK 221
VP L L + N L + PD + L ++ L +P N LK
Sbjct: 350 AEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR----MNSHLAEVPELPQN---LK 399
Query: 222 SLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEII-TLKCLSELSLRDNPL 280
L + N LR P E ++ L +++ ++ T L + +
Sbjct: 400 QLHVETNPLREFPDIP-------ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
Score = 102 bits (257), Expect = 3e-24
Identities = 54/222 (24%), Positives = 84/222 (37%), Gaps = 32/222 (14%)
Query: 72 PDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDMSNL----- 125
P N S T L+ ++ +T +P N + + + P +
Sbjct: 5 PRNVSN-TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63
Query: 126 -------KNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLS 178
+ L+ L P P L+ L NSL +P L L V +
Sbjct: 64 RLRDCLDRQAHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDN 120
Query: 179 LGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEII 238
+L+D+P LE L +S+NQLE LP + N LK + + NN L+ LP
Sbjct: 121 NNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP- 172
Query: 239 TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L+ + NN+L LP E+ L L+ + +N L
Sbjct: 173 ------PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL 207
Score = 59.6 bits (145), Expect = 5e-10
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 21/132 (15%)
Query: 163 HVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLE-SLPASISNL---- 217
+ L ++LT++P ++ + ++ E + P
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 218 ---------KMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLK 268
+ L L+N L +LP L+SL+ N L LP +LK
Sbjct: 62 VSRLRDCLDRQAHELELNNLGLSSLPELP-------PHLESLVASCNSLTELPELPQSLK 114
Query: 269 CLSELSLRDNPL 280
L + L
Sbjct: 115 SLLVDNNNLKAL 126
Score = 49.6 bits (119), Expect = 1e-06
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 26/127 (20%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP------------ 102
P ++ L+ N+L+ P NL+ L + N + P +
Sbjct: 336 PPRLERLIASFNHLAEVP---ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392
Query: 103 -----LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFP-IQILDIPTLKYLYL 156
L L N L P ++++L ++ ++ L+
Sbjct: 393 ELPQNLKQLHVETNPLR--EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVF 447
Query: 157 GNNSLNH 163
++ +H
Sbjct: 448 EHHHHHH 454
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 121 bits (306), Expect = 6e-32
Identities = 48/231 (20%), Positives = 83/231 (35%), Gaps = 14/231 (6%)
Query: 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLTAE 116
+ L+ P ++ L+L +N++ LP L+ L +N L+ +
Sbjct: 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 117 SLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPRE--INKLCK 173
+LK +LS N + L + L++L +++L + L
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 174 LHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQ-LESLPASI-SNLKMLKSLLLHNNKL 230
L L + + F L LE L ++ N E+ I + L+ L L L +L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 231 RTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
L LS L+ L + +N +L T L L L N +
Sbjct: 188 EQLSPT--AFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 107 bits (270), Expect = 7e-27
Identities = 41/207 (19%), Positives = 68/207 (32%), Gaps = 29/207 (14%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
++ L L N + N L LD ++ + + S
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS------EFSVF---------- 122
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYL-GNNSLNHVPREI-NKLCK 173
+L+NL ++S I + + +L+ L + GN+ + +I +L
Sbjct: 123 ------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176
Query: 174 LHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLR 231
L L L L + F L L+ L +S N SL L L+ L N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 232 TLPTEIITLKCLSEKLKSLLLHNNKLR 258
T + L+ L L L N
Sbjct: 237 TSKKQ--ELQHFPSSLAFLNLTQNDFA 261
Score = 87.8 bits (218), Expect = 1e-19
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 9/177 (5%)
Query: 127 NLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLT 185
+ + L P I + L L +N L +P + +KL +L LSL N L+
Sbjct: 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 186 DI---PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKC 242
+ L+ L LS N + ++ ++ L+ L+ L ++ L+ + E
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLS 124
Query: 243 LSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDMTYKPPSLLEL 298
L L L + + R I L L L + N F+ D+ + +L L
Sbjct: 125 LR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Score = 61.6 bits (150), Expect = 8e-11
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKL 230
C + LT +P L L N+L+SLP + L L L L +N L
Sbjct: 7 CSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 231 RTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + LK L L N + T+ + + L+ L L + + L
Sbjct: 65 SFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 118 bits (298), Expect = 7e-31
Identities = 59/205 (28%), Positives = 84/205 (40%), Gaps = 12/205 (5%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLST--LIARNNLLTAESLPKDMSNLKNLKVFNLSGN 136
+ ++ +T LP + P T L NLL S + L NL
Sbjct: 10 ASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA 65
Query: 137 QLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLY 195
+L + + +P L L L +N L +P L L VL + N LT +P L
Sbjct: 66 ELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 196 QLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254
+L+ L L N+L++LP + + L+ L L NN L LP + L L L +LLL
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL--LNGLE-NLDTLLLQE 181
Query: 255 NKLRTLPTEIITLKCLSELSLRDNP 279
N L T+P L L NP
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGNP 206
Score = 109 bits (274), Expect = 1e-27
Identities = 56/178 (31%), Positives = 79/178 (44%), Gaps = 6/178 (3%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P++ L L N L F +T L L+L +T L T L TL +N L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKL 171
SLP L L V ++S N+L P+ L + L+ LYL N L +P +
Sbjct: 90 Q--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 172 CKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNN 228
KL LSL N+LT++P L L+ L+L +N L ++P +L LH N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
Score = 91.7 bits (228), Expect = 3e-21
Identities = 52/161 (32%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLG 180
S + + N L P D+P L+L N L +L L+L
Sbjct: 7 SKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 181 GNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITL 240
LT + G L L L LS NQL+SLP L L L + N+L +LP L
Sbjct: 64 RAELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA--L 120
Query: 241 KCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
+ L E L+ L L N+L+TLP ++T L +LSL +N L
Sbjct: 121 RGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 43.2 bits (102), Expect = 7e-05
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 27/113 (23%)
Query: 190 TFGDLYQLEALILSDNQLESLPASI----------------------SNLKMLKSLLLHN 227
+ + L +LP + L L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 228 NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+L L + L +L L +N+L++LP TL L+ L + N L
Sbjct: 65 AELTKLQVDGTL-----PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 122 bits (307), Expect = 2e-30
Identities = 70/272 (25%), Positives = 110/272 (40%), Gaps = 26/272 (9%)
Query: 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFT 79
TVS + D S+ L +P++ P NI L L HN L P ++++
Sbjct: 3 TVSHEVADCSHLKLTQ---------VPDD----LPTNITVLNLTHNQLRRLPAANFTRYS 49
Query: 80 NLRSLDLSNNRITHL-PQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
L SLD+ N I+ L P+ P L L ++N L+ S K + NL +L N
Sbjct: 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNS 108
Query: 138 LEQFPIQIL-DIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDIPD---TFG 192
+++ L L L +N L+ +L L L L N + +
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168
Query: 193 DLYQLEALILSDNQLESL-PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLL 251
L+ L LS NQ++ P + L L L+N +L TE + L+ + +++L
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228
Query: 252 LHNNKLRTLPTEIIT---LKCLSELSLRDNPL 280
L N++L T L+ L L N L
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Score = 116 bits (293), Expect = 1e-28
Identities = 67/265 (25%), Positives = 104/265 (39%), Gaps = 25/265 (9%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKF-----TNLRSLDLSNNRITHL-PQAITNFP-LSTLIA 108
N+ L L ++ S F + L L+L+ N+I+ + A + L L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 109 RNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHV--- 164
N + E ++ L+N+ LS N+ Q +P+L+ L L +L +V
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472
Query: 165 PREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESL---------PASI 214
P L L +L L N++ +I D L +LE L L N L L +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 215 SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSEL 273
L L L L +N +P E+ K L +LK + L N L TLP + L L
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVF--KDLF-ELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 274 SLRDNPLVIRFVSDMTYKPPSLLEL 298
+L+ N + +L EL
Sbjct: 590 NLQKNLITSVEKKVFGPAFRNLTEL 614
Score = 114 bits (287), Expect = 8e-28
Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 24/264 (9%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL-PQAITNFPLSTLIA---RNN 111
N+ TL L HN LS + NL+ L LSNN+I L + + F S+L +N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDI----PTLKYLYLGNNSLNHVPRE 167
+ S P + L L+ QL + L + +++ L L N+ L+
Sbjct: 182 QIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 168 I---NKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESL-PASISNLKMLKS 222
K L +L L N+L + D+F L QLE L N ++ L S+ L ++
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 223 LLLHNNKLRTLPTEIITLKCLSE-------KLKSLLLHNNKLRTLPTEIIT-LKCLSELS 274
L L + + +L + + L+ L + +N + + + + T L L LS
Sbjct: 301 LNLKRS-FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359
Query: 275 LRDNPLVIRFVSDMTYKPPSLLEL 298
L ++ +R +++ T+ + L
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPL 383
Score = 112 bits (281), Expect = 5e-27
Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 29/274 (10%)
Query: 1 MSYNYGSSSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDT 60
+S ++ S + + S + L+ + + + S+ + L + ++
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI-SKIESDAFSWLGH---------LEV 409
Query: 61 LLLYHNNLSFFPDNA--SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTL-IARNNLLTA 115
L L N + N+ + LS N+ L + P L L + R L
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREINK---- 170
+S P L+NL + +LS N + +L + L+ L L +N+L + + N
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 171 -----LCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSL 223
L LH+L+L N +I + F DL++L+ + L N L +LPAS+ +N LKSL
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 224 LLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKL 257
L N + ++ + L L + N
Sbjct: 590 NLQKNLITSVEKK--VFGPAFRNLTELDMRFNPF 621
Score = 111 bits (279), Expect = 1e-26
Identities = 53/280 (18%), Positives = 102/280 (36%), Gaps = 26/280 (9%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNL 81
++ Y+++ + + L N Y + + +L D + L
Sbjct: 273 QLEYFFLEYNNI-QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331
Query: 82 RSLDLSNNRITHL-PQAITNFP-LSTLIARNNLLTAESLPKDM---SNLKNLKVFNLSGN 136
L++ +N I + T L L N+ + +L + L + NL+ N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
Query: 137 QLEQFPIQIL-DIPTLKYLYLGNNSLNHV--PREINKLCKLHVLSLGGNSLTDI-PDTFG 192
++ + + L+ L LG N + +E L + + L N + ++F
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA 451
Query: 193 DLYQLEALILSDNQLESL---PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKS 249
+ L+ L+L L+++ P+ L+ L L L NN + + +++ EKL+
Sbjct: 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML---EGLEKLEI 508
Query: 250 LLLHNNKLRTLPTEIIT---------LKCLSELSLRDNPL 280
L L +N L L L L L+L N
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Score = 55.4 bits (134), Expect = 2e-08
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 7/149 (4%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNL 81
++ LD +++L L + K ++ L L N P L
Sbjct: 505 KLEILDLQHNNL--ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562
Query: 82 RSLDLSNNRITHL-PQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139
+ +DL N + L N L +L + NL+T+ +NL ++ N +
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Query: 140 QFPIQILDIPTLKYLYLGNNSLNHVPREI 168
I + ++ + ++ +
Sbjct: 623 CTCESIAWF--VNWINETHTNIPELSSHY 649
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 116 bits (292), Expect = 3e-30
Identities = 51/236 (21%), Positives = 87/236 (36%), Gaps = 38/236 (16%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P + L L N L + F L+ LDLS I + +
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--Y------------ 72
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKL 171
+L +L L+GN ++ + + L+ L +L + L
Sbjct: 73 ---------QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 172 CKLHVLSLGGNSLTDIP--DTFGDLYQLEALILSDNQLESLPASI----SNLKMLK-SLL 224
L L++ N + + F +L LE L LS N+++S+ + + +L SL
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 225 LHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNP 279
L N + + +LK L L N+L+++P I L L ++ L NP
Sbjct: 184 LSLNPMNFIQPGAFK----EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Score = 70.8 bits (174), Expect = 5e-14
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 29/159 (18%)
Query: 54 KPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNL 112
++ L+ NL+ + L+ L++++N I
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----------------- 140
Query: 113 LTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKY----LYLGNNSLNHVPRE 167
LP+ SNL NL+ +LS N+++ L + + L L N +N +
Sbjct: 141 -----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195
Query: 168 INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDN 205
K +L L+L N L +PD F L L+ + L N
Sbjct: 196 AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 54.6 bits (132), Expect = 1e-08
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 181 GNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIIT 239
+ IPD + + L LS N L L + + L+ L L +++T+
Sbjct: 16 ELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 240 -LKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
L L +L+L N +++L + L L +L + L
Sbjct: 74 SLS----HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 45.3 bits (108), Expect = 1e-05
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLR----SLDLSNNRITHLPQ 96
I+ +Y N++ L L N + + SLDLS N + +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 97 AI-TNFPLSTLIARNNLLTAESLPKD-MSNLKNLKVFNLSGN 136
L L N L S+P L +L+ L N
Sbjct: 195 GAFKEIRLKELALDTNQLK--SVPDGIFDRLTSLQKIWLHTN 234
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 118 bits (298), Expect = 4e-30
Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 18/222 (8%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP 119
L L N L+ + +L ++S N ++ L I + L A +N + +
Sbjct: 169 NLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLAIPIA---VEELDASHNSIN--VVR 221
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLS 178
+ L + L N L +L+ P L + L N L + K+ +L L
Sbjct: 222 GPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 179 LGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEII 238
+ N L + + L+ L LS N L + + L++L L +N + TL
Sbjct: 279 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH 338
Query: 239 TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
LK+L L +N + + ++ ++ D
Sbjct: 339 H------TLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQ 373
Score = 112 bits (283), Expect = 5e-28
Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 21/230 (9%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLL 113
N + ++ + P F + L+L++ +I + A + L N +
Sbjct: 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 114 TAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREI-NK 170
LP + N+ L V L N L P I + P L L + NN+L + +
Sbjct: 106 R--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 171 LCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L L L N LT + + L +S N L +L I+ ++ L +N +
Sbjct: 164 TTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSI 217
Query: 231 RTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + +L L L +N L ++ L E+ L N L
Sbjct: 218 NVVRGPVNV------ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNEL 260
Score = 98.6 bits (246), Expect = 4e-23
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 9/194 (4%)
Query: 54 KPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNL 112
P ++ L HN+++ L L L +N +T + N+P L + N
Sbjct: 203 IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNE 259
Query: 113 LTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKL 171
L + ++ L+ +S N+L + IPTLK L L +N L HV R +
Sbjct: 260 LE--KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
+L L L NS+ + + L+ L LS N + + + + ++
Sbjct: 318 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 375
Query: 232 TLPTEIITLKCLSE 245
+ ++ C E
Sbjct: 376 KIDYQLEHGLCCKE 389
Score = 95.1 bits (237), Expect = 8e-22
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGG 181
L N K+ + + + P +LD ++ L L + + + + L +G
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIIT 239
N++ +P F ++ L L+L N L SLP I N L +L + NN L + + T
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--T 160
Query: 240 LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + L++L L +N+L + + L ++ N L
Sbjct: 161 FQATT-SLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLL 198
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 119 bits (300), Expect = 1e-29
Identities = 63/261 (24%), Positives = 101/261 (38%), Gaps = 32/261 (12%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAI-T 99
QIE + + I L + N + + P + L L L N ++ LP+ I
Sbjct: 86 QIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144
Query: 100 NFP-LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQIL----------- 146
N P L+TL NN L + D +L+ LS N+L + ++
Sbjct: 145 NTPKLTTLSMSNNNLE--RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN 202
Query: 147 ------DIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEAL 200
++ L +NS+N V +N +L +L L N+LTD + L +
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNNLTDTA-WLLNYPGLVEV 259
Query: 201 ILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRT 259
LS N+LE + ++ L+ L + NN+L L + LK L L +N L
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP----TLKVLDLSHNHLLH 315
Query: 260 LPTEIITLKCLSELSLRDNPL 280
+ L L L N +
Sbjct: 316 VERNQPQFDRLENLYLDHNSI 336
Score = 114 bits (286), Expect = 7e-28
Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 18/225 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
++ L L N L+ + +L ++S N ++ L I + L A +N +
Sbjct: 172 SLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLAIPIA---VEELDASHNSIN-- 224
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLH 175
+ + L + L N L +L+ P L + L N L + K+ +L
Sbjct: 225 VVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
L + N L + + L+ L LS N L + + L++L L +N + TL
Sbjct: 282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 341
Query: 236 EIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
LK+L L +N + + ++ ++ D
Sbjct: 342 STHH------TLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQ 379
Score = 96.9 bits (241), Expect = 6e-22
Identities = 52/275 (18%), Positives = 99/275 (36%), Gaps = 17/275 (6%)
Query: 54 KPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNL 112
P ++ L HN+++ L L L +N +T + N+P L + N
Sbjct: 209 IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNE 265
Query: 113 LTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKL 171
L + ++ L+ +S N+L + IPTLK L L +N L HV R +
Sbjct: 266 LE--KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
+L L L NS+ + + L+ L LS N + + + + ++
Sbjct: 324 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 381
Query: 232 TLPTEIITLKCLSEKLKSLLLHNNKLRTLPT-----EIITLKCLSELSLRDNPLVIRFVS 286
+ ++ C E K L + L + + +C + ++ + +++
Sbjct: 382 KIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYIT 441
Query: 287 DMTYKP---PSLLELASRTLKVHEIDYSQEHLPQN 318
P LE L+ + E + Q
Sbjct: 442 QQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQE 476
Score = 91.9 bits (228), Expect = 3e-20
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 9/161 (5%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGG 181
L N K+ + + + P +L ++ L L + + + + L +G
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 182 NSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIIT 239
N++ +P F ++ L L+L N L SLP I N L +L + NN L + + T
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD--T 166
Query: 240 LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + L++L L +N+L + + L ++ N L
Sbjct: 167 FQATT-SLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLL 204
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 117 bits (296), Expect = 4e-29
Identities = 51/246 (20%), Positives = 93/246 (37%), Gaps = 15/246 (6%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
IE + + YN ++++ + K +L+ L ++N+ + +
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTL-----KLKSLKRLTFTSNKGGNAFSEVDLP 347
Query: 102 PLSTLIARNNLLTAESLPKD-MSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNS 160
L L N L+ + +LK +LS N + L + L++L +++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 161 LNHVPREI--NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLES--LPASIS 215
L + L L L + F L LE L ++ N + LP +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 216 NLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELS 274
L+ L L L +L L LS L+ L + +N+L+++P I L L ++
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPT--AFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524
Query: 275 LRDNPL 280
L NP
Sbjct: 525 LHTNPW 530
Score = 109 bits (274), Expect = 3e-26
Identities = 57/293 (19%), Positives = 106/293 (36%), Gaps = 19/293 (6%)
Query: 15 DSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDN 74
+FK + + L + + T I+ L + + + NL F +
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLEKFDKS 249
Query: 75 ASKFTNLRSLDLSNNRITHLPQAITNFP-----LSTLIARNNLLTAESLPKDMSNLKNLK 129
A L +L + R+ +L + + L+ + + + + KD S +
Sbjct: 250 A--LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDI-- 187
L + QFP L +LK L +N + E++ L L L L N L+
Sbjct: 308 HLELVNCKFGQFPTLKL--KSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGC 364
Query: 188 -PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEK 246
+ L+ L LS N + ++ ++ L+ L+ L ++ L+ + E L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLR-N 422
Query: 247 LKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDMTYKPPSLLEL 298
L L + + R I L L L + N F+ D+ + +L L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Score = 109 bits (274), Expect = 3e-26
Identities = 50/245 (20%), Positives = 87/245 (35%), Gaps = 31/245 (12%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP 119
T N PDN + ++LDLS N + HL
Sbjct: 11 TYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLG-----------------------S 45
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVL 177
+ L+V +LS +++ + L L L N + + + L L L
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 178 SLGGNSLTDIPD-TFGDLYQLEALILSDNQLESL--PASISNLKMLKSLLLHNNKLRTLP 234
+L + + G L L+ L ++ N ++S P SNL L+ L L +NK++++
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 235 TEIIT-LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPP 293
+ L + SL L N + + L +L+LR+N + +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225
Query: 294 SLLEL 298
L
Sbjct: 226 GLEVH 230
Score = 95.2 bits (237), Expect = 2e-21
Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNNLL 113
++ TL+L N + A S ++L+ L + L I + L L +NL+
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-----IPTLKYLYLGNNSLNHVPREI 168
+ LP+ SNL NL+ +LS N+++ L L L N +N +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 169 NKLCKLHVLSLGGN--SLTDIPDTFGDLYQLEALIL------SDNQLESLPASI-SNLKM 219
K +LH L+L N SL + L LE L ++ LE S L
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 220 LKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
L L +II L + S L + + + + L L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCK 315
Query: 280 L 280
Sbjct: 316 F 316
Score = 53.6 bits (129), Expect = 6e-08
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 26/110 (23%)
Query: 56 ENIDTLLLYHNNL--SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
+++ L + N+ +F PD ++ NL LDLS ++ L
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------------------ 486
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLN 162
P ++L +L+V N++ NQL+ P I D + +L+ ++L N +
Sbjct: 487 -----PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 114 bits (287), Expect = 4e-29
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 20/237 (8%)
Query: 57 NIDTLLLYHNNLS---FFPDNASKFTNLRSLDLSN-NRIT-HLPQAITNFP-LSTLIARN 110
++ L L NL P + + L L + N + +P AI L L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 111 NLLTAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREI 168
++ ++P +S +K L + S N L P I +P L + N ++ +P
Sbjct: 111 TNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 169 NKLCKLH-VLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLL 225
KL +++ N LT IP TF +L L + LS N LE + K + + L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 226 HNNKLR-TLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPL 280
N L L ++ K L L L NN++ TLP + LK L L++ N L
Sbjct: 229 AKNSLAFDLG-KVGLSK----NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 112 bits (282), Expect = 2e-28
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 18/228 (7%)
Query: 62 LLYHNNLS-FFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFP-LSTLIARNNLLTAESL 118
+ NNL P +K T L L +++ ++ +P ++ L TL N L+ +L
Sbjct: 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TL 141
Query: 119 PKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTL-KYLYLGNNSLN-HVPREINKLCKLH 175
P +S+L NL GN++ P L + + N L +P L L
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLA 200
Query: 176 VLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-T 232
+ L N L D FG + + L+ N L L + K L L L NN++ T
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT 259
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNP 279
LP + LK L SL + N L +P L+ + +N
Sbjct: 260 LPQGLTQLK----FLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNK 302
Score = 108 bits (271), Expect = 7e-27
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 19/221 (8%)
Query: 72 PDNASKFTNLRSLDLSNNRIT---HLPQAITNFP-LSTL-IARNNLLTAESLPKDMSNLK 126
D ++ + +LDLS + +P ++ N P L+ L I N L +P ++ L
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLT 101
Query: 127 NLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKLHVLSLGGNSL 184
L ++ + P + I TL L N+L+ +P I+ L L ++ GN +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 185 T-DIPDTFGDLYQL-EALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR-TLPTEIITL 240
+ IPD++G +L ++ +S N+L +P + +NL L + L N L +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSD 220
Query: 241 KCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPL 280
K + + L N L L ++ K L+ L LR+N +
Sbjct: 221 K----NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256
Score = 94.5 bits (236), Expect = 5e-22
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 118 LPKDMSNLKNLKVFNLSGNQLE---QFPIQILDIPTLKYLYLGN-NSLN-HVPREINKLC 172
L + + +LSG L P + ++P L +LY+G N+L +P I KL
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 173 KLHVLSLGGNSLT-DIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKL 230
+LH L + +++ IPD + L L S N L +LP SIS+L L + N++
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 231 R-TLPTEIITLKCLSEKLKSLLLHNNKLR-TLPTEIITLKCLSELSLRDNPL 280
+P + L S+ + N+L +P L L+ + L N L
Sbjct: 162 SGAIPDSYGSFSKLFT---SMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209
Score = 48.7 bits (117), Expect = 1e-06
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 57 NIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFPLSTLIARNNLLT 114
N+ + L N L N + + L+ N + L + + L+ L RNN +
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNS 160
+LP+ ++ LK L N+S N L + P Q ++ NN
Sbjct: 258 G-TLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 114 bits (287), Expect = 8e-29
Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 13/225 (5%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTA 115
+ +L L N+ S T L L ++ +++ + I N L +L N +
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIED 191
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
S +++L +L F NQ+ + ++ L L +GNN + + + L +L
Sbjct: 192 IS---PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS-PLANLSQLT 246
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
L +G N ++DI DL +L+ L + NQ+ + ++NL L SL L+NN+L
Sbjct: 247 WLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDM 304
Query: 236 EIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
E+I L +L L N + + + +L + + +
Sbjct: 305 EVIGGL---TNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVI 345
Score = 106 bits (266), Expect = 6e-26
Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 17/223 (7%)
Query: 60 TLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAES 117
TL ++ FPD + L +T + ++ L+ + +
Sbjct: 4 TLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVAS-- 58
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVL 177
+ + L NL+ NL+GNQ+ + ++ L LY+G N + + + L L L
Sbjct: 59 -IQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115
Query: 178 SLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEI 237
L ++++DI +L ++ +L L N S + +SN+ L L + +K+ ++
Sbjct: 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV----KDV 170
Query: 238 ITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ L+ L SL L+ N++ + + +L L + N +
Sbjct: 171 TPIANLT-DLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQI 211
Score = 96.5 bits (241), Expect = 1e-22
Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 12/200 (6%)
Query: 81 LRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ 140
+L I + + + +T L+++ ++G ++
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVAS 58
Query: 141 FPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEAL 200
I + L+YL L N + + ++ L KL L +G N +TDI +L L L
Sbjct: 59 IQ-GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115
Query: 201 ILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL 260
L+++ + + ++NL + SL L N + + + + L L + +K++ +
Sbjct: 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMT----GLNYLTVTESKVKDV 170
Query: 261 PTEIITLKCLSELSLRDNPL 280
I L L LSL N +
Sbjct: 171 T-PIANLTDLYSLSLNYNQI 189
Score = 78.7 bits (195), Expect = 2e-16
Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 30/176 (17%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
++ Y N ++ + T L SL + NN+IT L
Sbjct: 200 SLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS--------------------- 237
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176
++NL L + NQ+ + D+ LK L +G+N ++ + +N L +L+
Sbjct: 238 ----PLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNS 291
Query: 177 LSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
L L N L + + G L L L LS N + + +++L + S N ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346
Score = 45.6 bits (109), Expect = 1e-05
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNNLLT 114
+ L + N +S + + L SL L+NN++ + + I L+TL N +T
Sbjct: 266 KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQ 140
+++L + + + +++
Sbjct: 325 DIR---PLASLSKMDSADFANQVIKK 347
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 114 bits (288), Expect = 3e-28
Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 19/234 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLL 113
I L + L + S ++ + + N+++ +P + L L NL+
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346
Query: 114 TAESLPKDM--SNLKNLKVFNLSGNQLEQFPIQILDI---PTLKYLYLGNNSLNHVPREI 168
E L +L+ LS N L + L L + N+ + +P
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406
Query: 169 NKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNN 228
K+ L+L + + LE L +S+N L+S + L+ L + N
Sbjct: 407 QWPEKMRFLNLSSTGIRVVKT--CIPQTLEVLDVSNNNLDSFSLFLPRLQELY---ISRN 461
Query: 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEII-TLKCLSELSLRDNPLV 281
KL+TLP L L + + N+L+++P I L L ++ L NP
Sbjct: 462 KLKTLPDAS-----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 112 bits (282), Expect = 2e-27
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 26/261 (9%)
Query: 4 NYGSSSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLL 63
++ S S S+ +TV+I+ L L L+T LL + + +
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEK---------VKRITV 317
Query: 64 YHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFP-----LSTLIARNNLLTA-E 116
++ + P + +L LDLS N + + L TL+ N L + +
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176
+ + LKNL ++S N P +++L L + + V I L V
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEV 435
Query: 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTE 236
L + N+L L +L+ L +S N+L++LP + S +L + + N+L+++P
Sbjct: 436 LDVSNNNLDSFSL---FLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDG 491
Query: 237 IITLKCLSEKLKSLLLHNNKL 257
I L+ + LH N
Sbjct: 492 IFD---RLTSLQKIWLHTNPW 509
Score = 107 bits (270), Expect = 9e-26
Identities = 55/281 (19%), Positives = 104/281 (37%), Gaps = 12/281 (4%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNN 111
+ +L L N +++ NL+ L L ++RI + A + L L +N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 112 LLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQ--ILDIPTLKYLYLG-NNSLNHVPRE 167
L+ SL L +LK NL GN + + ++ L+ L +G + + + R
Sbjct: 85 HLS--SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 168 -INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLL 224
L L+ L + SL + + + + L L ++ L L ++ L
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202
Query: 225 LHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRF 284
L + L + + +S +K L + L + L L +
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262
Query: 285 VSDMTYKPPSLLELASRTLKVHEIDYSQEHLPQNLVQYLES 325
++ + PS ++ S KV + + H+PQ + Y S
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Score = 97.9 bits (244), Expect = 2e-22
Identities = 48/276 (17%), Positives = 95/276 (34%), Gaps = 27/276 (9%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLL-LYHNNLSFFPDNASKFTNL 81
S++ L+ ++L + ++ K L N L + + +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256
Query: 82 RSLDLSNNRITHLPQAITNFP-----LSTLIARNNLLT----AESLPKDMSNLKNLKVFN 132
D + N + + ++ + T+ R + L S L+ +K
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 133 LSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHV----PREINKLCKLHVLSLGGNSLTDI 187
+ +++ P + +L++L L N + L L L N L +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 188 P---DTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLS 244
+ L L +L +S N +P S + ++ L L + +R + T C+
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT------CIP 430
Query: 245 EKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ L+ L + NN L + L L EL + N L
Sbjct: 431 QTLEVLDVSNNNLDSFSLF---LPRLQELYISRNKL 463
Score = 94.8 bits (236), Expect = 2e-21
Identities = 52/290 (17%), Positives = 100/290 (34%), Gaps = 20/290 (6%)
Query: 81 LRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ 140
D + T +P +T + +L N +T D+ NL+V L +++
Sbjct: 7 SGVCDGRSRSFTSIPSGLTAA-MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT 64
Query: 141 FPIQILD-IPTLKYLYLGNNSLNHVPRE-INKLCKLHVLSLGGNSLTDIPDT--FGDLYQ 196
+ +L++L L +N L+ + L L L+L GN + T F +L
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 197 LEALILSD-NQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254
L+ L + + + + L L L + LR ++ +LK + + L LH
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSIR-DIHHLTLHL 181
Query: 255 NKLRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQE 313
++ L L + L LRD L S L + + + ++ +
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNL--------ARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 314 HLPQNLVQYLESAHHCVNPKCKGVFFDNRIEHIKFVDFCGKYRIPLLQYL 363
L L + + F D + + + + L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283
Score = 64.4 bits (157), Expect = 2e-11
Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 20/152 (13%)
Query: 13 SSDSDSFKT-VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFF 71
+ T ++ +LD S ++ D + PE + L L +
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHP-----------MPDSCQWPEKMRFLNLSSTGIRVV 425
Query: 72 PDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVF 131
L LD+SNN + + L L N L +LP S L V
Sbjct: 426 KTCI--PQTLEVLDVSNNNLDSFSLFLPR--LQELYISRNKLK--TLPDA-SLFPVLLVM 478
Query: 132 NLSGNQLEQFPIQILDI-PTLKYLYLGNNSLN 162
+S NQL+ P I D +L+ ++L N +
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 64.0 bits (156), Expect = 3e-11
Identities = 34/154 (22%), Positives = 54/154 (35%), Gaps = 9/154 (5%)
Query: 149 PTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207
+ S +P + + L L N +T I L+ LIL +++
Sbjct: 5 DASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 208 ESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP--TEI 264
++ +L L+ L L +N L +L + LS LK L L N +TL +
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS--WFGPLS-SLKYLNLMGNPYQTLGVTSLF 119
Query: 265 ITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLEL 298
L L L + + SL EL
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 109 bits (274), Expect = 1e-27
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 31/207 (14%)
Query: 78 FTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
+ + LDL +N+++ LP K L L++ L+ N+
Sbjct: 36 PADTKKLDLQSNKLSSLP-----------------------SKAFHRLTKLRLLYLNDNK 72
Query: 138 LEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDL 194
L+ P I + L+ L++ +N L +P + ++L L L L N L +P F L
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 195 YQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLH 253
+L L L N+L+SLP + L LK L L+NN+L+ +P L+ +LK+L L
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD--KLT-ELKTLKLD 189
Query: 254 NNKLRTLPTEIIT-LKCLSELSLRDNP 279
NN+L+ +P L+ L L L++NP
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQENP 216
Score = 71.5 bits (176), Expect = 3e-14
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 150 TLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLE 208
+ + L +P I L L N L+ +P F L +L L L+DN+L+
Sbjct: 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 209 SLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT- 266
+LPA I LK L++L + +NKL+ LP + L L L L N+L++LP +
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFD--QLV-NLAELRLDRNQLKSLPPRVFDS 131
Query: 267 LKCLSELSLRDNPL 280
L L+ LSL N L
Sbjct: 132 LTKLTYLSLGYNEL 145
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 113 bits (284), Expect = 2e-27
Identities = 51/245 (20%), Positives = 84/245 (34%), Gaps = 31/245 (12%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP 119
T LS PD+ ++ +++DLS N + L
Sbjct: 15 TYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILK-----------------------S 49
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPRE-INKLCKLHVL 177
SN L+ +LS ++E + + L L L N + + L L L
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Query: 178 SLGGNSLTDIP-DTFGDLYQLEALILSDNQLES--LPASISNLKMLKSLLLHNNKLRTLP 234
L + G L L+ L ++ N + S LPA SNL L + L N ++T+
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Query: 235 TEIIT-LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPP 293
+ L+ + SL + N + + + L EL+LR N +
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229
Query: 294 SLLEL 298
L
Sbjct: 230 GLHVH 234
Score = 108 bits (271), Expect = 9e-26
Identities = 51/315 (16%), Positives = 96/315 (30%), Gaps = 51/315 (16%)
Query: 15 DSDSFKTVSIKTLDFSYSSLDSETLATQIELLPN---------------------NDYNK 53
+F+ + + L + S + T ++ L +
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256
Query: 54 KPENIDTLLLYHNNLSFFPDNASKF---TNLRSLDLSNNRITHLPQAITNFPLSTLIARN 110
++ + F D+ KF N+ ++ L+ I +L +F +L
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR 316
Query: 111 NLLTA------------------ESLPKDMSNLKNLKVFNLSGNQLEQFP---IQILDIP 149
L S+ L +L +LS N L L
Sbjct: 317 CQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 150 TLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQL 207
+L++L L N + L +L L ++L + + F L +L L +S
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 208 ESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT 266
+ I L L +L + N + + + L L L +L + +
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTT-NLTFLDLSKCQLEQISWGVFD 494
Query: 267 -LKCLSELSLRDNPL 280
L L L++ N L
Sbjct: 495 TLHRLQLLNMSHNNL 509
Score = 101 bits (254), Expect = 1e-23
Identities = 46/241 (19%), Positives = 88/241 (36%), Gaps = 19/241 (7%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNNLL 113
++ L+L N + F + S T+L +L ++ L I L L +N +
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-----IPTLKYLYLGNNSLNHVPREI 168
+ LP SNL NL +LS N ++ + L L + N ++ + +
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Query: 169 NKLCKLHVLSLGGNSLTD--IPDTFGDLYQLEALILSDNQLESL-------PASISNLKM 219
+ KLH L+L GN + + +L L L + + P+ + L
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 220 LKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
+ +I+ CL+ + ++ L ++ L ++ LS+
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQ 318
Query: 280 L 280
L
Sbjct: 319 L 319
Score = 99.3 bits (248), Expect = 8e-23
Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 39/238 (16%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P + + L N L + S F+ L+ LDLS I +
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE------------------ 72
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPRE-INKL 171
K L +L L+GN ++ F + +L+ L L + I +L
Sbjct: 73 -----DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 172 CKLHVLSLGGNSLTDI--PDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLL---- 224
L L++ N + P F +L L + LS N ++++ + L+ +
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Query: 225 LHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRT--LPTEIITLKCLSELSLRDNPL 280
+ N + + + KL L L N + + T + L L L
Sbjct: 188 MSLNPIDFIQDQAFQGI----KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Score = 98.2 bits (245), Expect = 2e-22
Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 21/219 (9%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLR 82
S+ LD S ++L + + ++ L L N N L+
Sbjct: 351 SLSYLDLSRNALS--------FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402
Query: 83 SLDLSNNRITHLPQAITNFPLSTL----IARNNLLTAESLPKDM-SNLKNLKVFNLSGNQ 137
LD ++ + + + L L I+ N + + L +L ++GN
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT---KIDFDGIFLGLTSLNTLKMAGNS 459
Query: 138 LEQFPIQIL--DIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGD 193
+ + + + L +L L L + + + L +L +L++ N+L + +
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519
Query: 194 LYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLR 231
LY L L S N++E+ + K L L NN +
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 97.8 bits (244), Expect = 2e-22
Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 16/239 (6%)
Query: 53 KKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTL----IA 108
+ P+ +L + N + F D A + L L L N + L+ L +
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237
Query: 109 RNNLLTAESL----PKDMSNLKNLKVFNLSGNQLEQFPIQILDI---PTLKYLYLGNNSL 161
+L P M L ++ + F I+ + + L S+
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
Query: 162 NHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLK 221
++ ++ K K LS+ L P DL L++L L+ N+ L L
Sbjct: 298 KYLE-DVPKHFKWQSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSISF-KKVALPSLS 353
Query: 222 SLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L L N L + + L+ L L N + + L+ L L + + L
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 109 bits (275), Expect = 3e-27
Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 17/241 (7%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNN 111
E + +L L +N +++ ++ + NL++L L++N I + + ++ L L N
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 112 LLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQIL--DIPTLKYLYLGNN-SLNHVPRE 167
L+ +L L +L NL GN + L + L+ L +GN + + R+
Sbjct: 111 YLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 168 I-NKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLL 224
L L L + + L + + + LIL Q L ++ L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228
Query: 225 LHNNKLRTLP-TEIITLKCLS----EKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
L + L T +E+ T + S +++ + + L + + + L EL N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288
Query: 280 L 280
L
Sbjct: 289 L 289
Score = 104 bits (260), Expect = 3e-25
Identities = 36/220 (16%), Positives = 78/220 (35%), Gaps = 24/220 (10%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTL----IARNN 111
+++ L L +N LS + ++L L+L N L + L+ L + +
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Query: 112 LLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI- 168
T + + + L L+ + + L+ + + L I + +L L +
Sbjct: 161 TFT--KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218
Query: 169 NKLCKLHVLSLGGNSLTDIP---------DTFGDLYQLEALILSDNQLESLPASISNLKM 219
+ + L L L ++ + + ++D L + ++ +
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278
Query: 220 LKSLLLHNNKLRTLPTEIIT-LKCLSEKLKSLLLHNNKLR 258
L L N+L+++P I L L+ + LH N
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLT----SLQKIWLHTNPWD 314
Score = 27.4 bits (61), Expect = 8.4
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 225 LHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
+ L ++P+ + +E +KSL L NN++ + + L L L N +
Sbjct: 38 GSSGSLNSIPSGL------TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 110 bits (276), Expect = 2e-26
Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 19/238 (7%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLP----QAITNFPLSTLIARNN 111
+++L L N++S L+ LD NN I +L ++ +L N
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD---IPTLKYLYLGNNSLNHVPREI 168
+ + + + N G Q + L I +L + + +
Sbjct: 190 DIA--GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 169 ---NKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLL 224
+ ++L + +I +TF L+ L L+ L LP+ + L LK L+
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLV 307
Query: 225 LHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL--PTEIITLKCLSELSLRDNPL 280
L NK L + L L + N R + L+ L EL L + +
Sbjct: 308 LSANKFENLCQI--SASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Score = 108 bits (272), Expect = 7e-26
Identities = 43/237 (18%), Positives = 86/237 (36%), Gaps = 13/237 (5%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNN 111
P + + L N L + S+ NL LDL+ +I + + L TL+ N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVP-REIN 169
L + +S K LK + L + TL+ LYLG+N ++ + +
Sbjct: 92 PLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150
Query: 170 KLCKLHVLSLGGNSLTDI-PDTFGDLYQLE--ALILSDNQLESLPASISNLKMLKSLLLH 226
KL VL N++ + + L Q +L L+ N + + + + +SL
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG 210
Query: 227 NNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKC---LSELSLRDNPL 280
+ + + + + L + + + C + ++L+ +
Sbjct: 211 GTQNLLVIFKGLKNSTIQ-SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266
Score = 102 bits (257), Expect = 6e-24
Identities = 59/246 (23%), Positives = 95/246 (38%), Gaps = 23/246 (9%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF---T 79
S+ L ++ E +E L N + L L H+++ + +
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLEN---------LRELDLSHDDIETSDCCNLQLRNLS 376
Query: 80 NLRSLDLSNNRITHL-PQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
+L+SL+LS N L +A P L L L + NL LKV NLS +
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 138 LEQFPIQILD-IPTLKYLYLGNNSLNHV----PREINKLCKLHVLSLGGNSLTDIP-DTF 191
L+ Q+ D +P L++L L N + L +L +L L L+ I F
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 192 GDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLL 251
L + + LS N+L S + L L +N + + L LS + +++
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPS--LLPILS-QQRTIN 553
Query: 252 LHNNKL 257
L N L
Sbjct: 554 LRQNPL 559
Score = 85.8 bits (213), Expect = 2e-18
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 9/156 (5%)
Query: 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHV-PREINKLCKLHVLSLGGNSLTDI 187
K +N L + P + + + L N L + ++L L L L + I
Sbjct: 15 KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 188 -PDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSE 245
DTF ++L+ L+L+ N L + + S K LK L + ++ L
Sbjct: 73 HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI--PLHNQK- 129
Query: 246 KLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPL 280
L+SL L +N + ++ + L L ++N +
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 105 bits (265), Expect = 4e-25
Identities = 50/227 (22%), Positives = 84/227 (37%), Gaps = 31/227 (13%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP 119
T N PDN + ++LDLS N + HL
Sbjct: 11 TYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLG-----------------------S 45
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPRE-INKLCKLHVL 177
+ L+V +LS +++ + L L L N + + + L L L
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 178 SLGGNSLTD-IPDTFGDLYQLEALILSDNQLESL--PASISNLKMLKSLLLHNNKLRTL- 233
+L G L L+ L ++ N ++S P SNL L+ L L +NK++++
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 234 PTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
T++ L + SL L N + + L +L+LR+N
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212
Score = 103 bits (258), Expect = 4e-24
Identities = 56/298 (18%), Positives = 105/298 (35%), Gaps = 25/298 (8%)
Query: 13 SSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFP 72
+FK + + L + + T I+ L + + + NL F
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH---RLVLGEFRNEGNLEKFD 247
Query: 73 DNASKFTNLRSLDLSNNRITHLPQAITNFP--------LSTLIARNNLLTAESLPKDMSN 124
+A L +L + R+ +L + + +S+ + + KD S
Sbjct: 248 KSA--LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSY 302
Query: 125 LKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSL 184
+ L + QFP L +LK L +N + E++ L L L L N L
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKL--KSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGL 359
Query: 185 TD---IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLK 241
+ + L+ L LS N + ++ ++ L+ L+ L ++ L+ + + L
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 242 CLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDMTYKPPSLLEL 298
L L + + R I L L L + N F+ D+ + +L L
Sbjct: 420 L--RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Score = 98.2 bits (245), Expect = 2e-22
Identities = 57/239 (23%), Positives = 82/239 (34%), Gaps = 14/239 (5%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNN 111
P + L L N L + F L+ LDLS I + A + LSTLI N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLEQF-PIQILDIPTLKYLYLGNNSLNHV--PREI 168
+ S L +L+ L I + TLK L + +N + P
Sbjct: 87 PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 169 NKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEA----LILSDNQLESLPASISNLKMLKSL 223
+ L L L L N + I L+Q+ L LS N + + L L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205
Query: 224 LLHNNKLRT--LPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L NN + T I L L L N+ + L+ L L++ + L
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Score = 95.9 bits (239), Expect = 1e-21
Identities = 49/241 (20%), Positives = 85/241 (35%), Gaps = 18/241 (7%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNNLL 113
++ TL+L N + A S ++L+ L + L I + L L +NL+
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-----IPTLKYLYLGNNSLNHVPREI 168
+ LP+ SNL NL+ +LS N+++ L L L N +N +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 169 NKLCKLHVLSLGGNSLTD--IPDTFGDLYQLEALILSDNQLESL-------PASISNLKM 219
K +LH L+L N + + L LE L + + +++ L
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256
Query: 220 LKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
L L +II L + S L + + + + L L +
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCK 315
Query: 280 L 280
Sbjct: 316 F 316
Score = 92.4 bits (230), Expect = 2e-20
Identities = 48/251 (19%), Positives = 83/251 (33%), Gaps = 17/251 (6%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT-----HLPQAITNFPLSTLIARNNLLT 114
+L L N ++F A K L L L NN + Q + + L+
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPT-------LKYLYLGNNSLNHVPRE 167
D S L+ L + +L + DI + L + ++ V +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-D 299
Query: 168 INKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHN 227
+ L L P L L+ L + N+ + S +L L+ L L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSR 356
Query: 228 NKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSD 287
N L + + LK L L N + T+ + + L+ L L + + L
Sbjct: 357 NGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 288 MTYKPPSLLEL 298
+ +L+ L
Sbjct: 416 VFLSLRNLIYL 426
Score = 82.8 bits (205), Expect = 2e-17
Identities = 39/181 (21%), Positives = 56/181 (30%), Gaps = 29/181 (16%)
Query: 57 NIDTLLLYHNNLSFFPDNA--SKFTNLRSLDLSNNRITHL-PQAITNFP-LSTLIARNNL 112
++ L H+NL + + NL LD+S+ L L N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 113 LTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLC 172
LP + L+NL +LS QLEQ P N L
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLS----------------------PTAFNSLS 494
Query: 173 KLHVLSLGGNSLTD-IPDTFGDLYQLEALILSDNQLESLPASI--SNLKMLKSLLLHNNK 229
L VL++ N+ + L L+ L S N + + L L L N
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554
Query: 230 L 230
Sbjct: 555 F 555
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 102 bits (255), Expect = 5e-24
Identities = 62/258 (24%), Positives = 101/258 (39%), Gaps = 34/258 (13%)
Query: 42 QIELLPNND-YNKKPENIDTLLLYHNNLSFFPDNA---------SKFTNLRSLDLSNNRI 91
+++ + D N + ++ L L L + K T++ +LDLS N
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 92 THLP-----QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL 146
AI + +LI N+ S +N K+ F G L
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH--TNFKDPDNFTFKG----------L 272
Query: 147 DIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSD 204
+ +K L + + + + + + L L+L N + I D F L L L LS
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 205 NQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE 263
N L S+ + + NL L+ L L N +R L + + L LK L L N+L+++P
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--SFLGLP-NLKELALDTNQLKSVPDG 389
Query: 264 II-TLKCLSELSLRDNPL 280
I L L ++ L NP
Sbjct: 390 IFDRLTSLQKIWLHTNPW 407
Score = 89.8 bits (223), Expect = 7e-20
Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 24/244 (9%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL--PQAITNFP-LSTLIARN 110
P +++ + L N+++ + + S+ +L+ L + + L L
Sbjct: 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 111 NLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQI---LDIPTLKYLYLGNNSLNHVPR 166
N L + L NL+V L+ L+ + + +L+ L L +N++ +
Sbjct: 89 NQFL--QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 167 EI--NKLCKLHVLSLGGNSLTDIP-DTFGDLY--QLEALILSDNQLESLPA--------- 212
+ + HVL L N + I + + L LS L+ +
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 213 SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSE 272
+ + +L L N + + K++SL+L N+ K
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 273 LSLR 276
+ +
Sbjct: 267 FTFK 270
Score = 86.3 bits (214), Expect = 1e-18
Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 33/220 (15%)
Query: 19 FKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLL---LYHNNLSFFPDNA 75
FK SI TLD S + + + + + H N +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 76 S---KFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN 132
+ + +++ DLS ++I L +++ S+ +L+
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSV-----------------------FSHFTDLEQLT 305
Query: 133 LSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-D 189
L+ N++ + + L L L N L + + L KL VL L N + +
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Query: 190 TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
+F L L+ L L NQL+S+P I L L+ + LH N
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 59.8 bits (145), Expect = 5e-10
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 60 TLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAI----TNFPLSTLIARNNLLT 114
L L N ++ DNA T+L L+LS N + + + L L N +
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK--LEVLDLSYNHIR 360
Query: 115 AESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLN 162
+L L NLK L NQL+ P I D + +L+ ++L N +
Sbjct: 361 --ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 102 bits (256), Expect = 5e-24
Identities = 53/225 (23%), Positives = 93/225 (41%), Gaps = 14/225 (6%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTA 115
N+D L L N L + TNL LDL+NN+I++L ++ L+ L N ++
Sbjct: 222 NLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISN 279
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
S ++ L L L+ NQLE I ++ L YL L N+++ + ++ L KL
Sbjct: 280 IS---PLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS-PVSSLTKLQ 334
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
L N ++D+ + +L + L NQ+ L ++NL + L L++ P
Sbjct: 335 RLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPV 392
Query: 236 EIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + + + P I +E + N
Sbjct: 393 NYKANV----SIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433
Score = 101 bits (253), Expect = 1e-23
Identities = 55/226 (24%), Positives = 104/226 (46%), Gaps = 17/226 (7%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
+ + TL + NL ++ SNN++T + + N L ++ NN +
Sbjct: 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIA 103
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
++NL NL L NQ+ + ++ L L L +N+++ + ++ L L
Sbjct: 104 D---ITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSL 158
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
LS G P +L LE L +S N++ + ++ L L+SL+ NN++
Sbjct: 159 QQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI---- 211
Query: 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
++I L L+ L L L+ N+L+ + T + +L L++L L +N +
Sbjct: 212 SDITPLGILT-NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQI 255
Score = 98.9 bits (247), Expect = 7e-23
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 20/226 (8%)
Query: 58 IDTLLLYHNNL--SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
+ + + + F D + L +T + T+ ++TL A +
Sbjct: 3 LGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIK 59
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
+ + L NL N S NQL + ++ L + + NN + + + L L
Sbjct: 60 S---IDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNL 114
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
L+L N +TDI +L L L LS N + + ++S L L+ L N
Sbjct: 115 TGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQV----- 167
Query: 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
T++ L L+ L+ L + +NK+ + + L L L +N +
Sbjct: 168 TDLKPLANLT-TLERLDISSNKVSDIS-VLAKLTNLESLIATNNQI 211
Score = 83.5 bits (207), Expect = 9e-18
Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 6/185 (3%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
+ L L N +S + T L +L+L+ N++ + L+ L N ++
Sbjct: 266 KLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176
S +S+L L+ N++ + ++ + +L G+N ++ + + L ++
Sbjct: 325 S---PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLT-PLANLTRITQ 379
Query: 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTE 236
L L + T+ P + + + + PA+IS+ + N
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEV 439
Query: 237 IITLK 241
T
Sbjct: 440 SYTFS 444
Score = 62.3 bits (152), Expect = 8e-11
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 4/149 (2%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L LY NN+S S T L+ L NN+++ + ++ L A +N ++
Sbjct: 310 NLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 368
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176
+ ++NL + L+ P+ ++ P I+
Sbjct: 369 T---PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425
Query: 177 LSLGGNSLTDIPDTFGDLYQLEALILSDN 205
+ N + + Q +
Sbjct: 426 PDITWNLPSYTNEVSYTFSQPVTIGKGTT 454
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 102 bits (256), Expect = 5e-24
Identities = 56/231 (24%), Positives = 103/231 (44%), Gaps = 18/231 (7%)
Query: 61 LLLYHNNLS-FFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESL 118
+ + FPD F +L +T + +IA N+ + S+
Sbjct: 4 TITVSTPIKQIFPD--DAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIK--SV 58
Query: 119 PKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLS 178
+ + L N+ L+GN+L + ++ L +L+L N + + + L KL LS
Sbjct: 59 -QGIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115
Query: 179 LGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEII 238
L N ++DI L QLE+L L +N++ + +S L L +L L +N++ ++I+
Sbjct: 116 LEHNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQI----SDIV 169
Query: 239 TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMT 289
L L+ KL++L L N + L + LK L L L + + ++ +
Sbjct: 170 PLAGLT-KLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQS 218
Score = 93.2 bits (231), Expect = 9e-21
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 12/197 (6%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
+ID ++ ++++ N+ L L+ N++T + + +TN L L N +
Sbjct: 43 NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIK 100
Query: 115 A-ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173
SL +LK LK +L N + ++ +P L+ LYLGNN + + +++L K
Sbjct: 101 DLSSL----KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTK 154
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
L LSL N ++DI L +L+ L LS N + L A ++ LK L L L + +
Sbjct: 155 LDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 212
Query: 234 PTEIITLKCLSEKLKSL 250
P + + +K+
Sbjct: 213 PINHQSNLVVPNTVKNT 229
Score = 92.5 bits (229), Expect = 2e-20
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 17/202 (8%)
Query: 81 LRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139
+ + I + F + +T + L ++ + + ++
Sbjct: 1 MGETITVSTPIKQIF-PDDAFAETIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIK 56
Query: 140 QF-PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLE 198
IQ L P + L+L N L + + L L L L N + D+ + DL +L+
Sbjct: 57 SVQGIQYL--PNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDL-SSLKDLKKLK 112
Query: 199 ALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258
+L L N + + + +L L+SL L NNK+ T+I L L+ KL +L L +N++
Sbjct: 113 SLSLEHNGISDING-LVHLPQLESLYLGNNKI----TDITVLSRLT-KLDTLSLEDNQIS 166
Query: 259 TLPTEIITLKCLSELSLRDNPL 280
+ + L L L L N +
Sbjct: 167 DIV-PLAGLTKLQNLYLSKNHI 187
Score = 48.2 bits (114), Expect = 3e-06
Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
+++L L +N ++ S+ T L +L L +N+I+ + L L N ++
Sbjct: 132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 190
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQIL-DIPTLKYLYLGNNSLNHVPREINKLCKLH 175
++ LKNL V L + PI ++ + + SL P I+
Sbjct: 191 R---ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYE 246
Query: 176 VLSLGGNSLT 185
++ +
Sbjct: 247 KPNVKWHLPE 256
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 99.1 bits (247), Expect = 2e-23
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 32/204 (15%)
Query: 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESL 118
+ L L P + + LDLS+N ++ L
Sbjct: 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAE--------------------- 57
Query: 119 PKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NKLCKLHV 176
+ L NL LS N L + +P L+YL L +N L+ + + + L L V
Sbjct: 58 -WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 177 LSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPA----SISNLKMLKSLLLHNNKLR 231
L L N + + + F D+ QL+ L LS NQ+ P + L L L L +NKL+
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
Query: 232 TLPTEIITLKCLSEKLKSLLLHNN 255
LP + K + L LHNN
Sbjct: 177 KLPLTDLQ-KLPAWVKNGLYLHNN 199
Score = 96.8 bits (241), Expect = 1e-22
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 10/172 (5%)
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQIL--DIPTLKYLYLGNNSLNHVPREI-NKLCK 173
++P+ + + + +LS N L + + + L L L +N LN + E +
Sbjct: 32 NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 174 LHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLR 231
L L L N L + F DL LE L+L +N + + + ++ L+ L L N++
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 232 TLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEII---TLKCLSELSLRDNPL 280
P E+I KL L L +NKL+ LP + + L L +NPL
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201
Score = 75.3 bits (185), Expect = 3e-15
Identities = 50/195 (25%), Positives = 72/195 (36%), Gaps = 41/195 (21%)
Query: 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTN 80
LD S+ + L + N+ +LLL HN+L+F A N
Sbjct: 39 SYTALLDLSH---------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 81 LRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ 140
LR LDLS+N + L S+L+ L+V L N +
Sbjct: 90 LRYLDLSSNHLHTLD-----------------------EFLFSDLQALEVLLLYNNHIVV 126
Query: 141 FPIQILD-IPTLKYLYLGNNSLNHVPREI----NKLCKLHVLSLGGNSLTDIP-DTFGDL 194
+ + L+ LYL N ++ P E+ NKL KL +L L N L +P L
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Query: 195 YQL--EALILSDNQL 207
L L +N L
Sbjct: 187 PAWVKNGLYLHNNPL 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 100 bits (250), Expect = 3e-23
Identities = 47/254 (18%), Positives = 93/254 (36%), Gaps = 11/254 (4%)
Query: 31 YSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNR 90
L + +L Q+ ++ +L + + +++ L +LS +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360
Query: 91 ITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPT 150
T L + + + N ++ M L L + ++ +D
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST--LKAVDPMR 418
Query: 151 L-KYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLES 209
L + L + + VL L LT + L + L LS N+L +
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA 477
Query: 210 LPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT--EIITL 267
LP +++ L+ L+ L +N L + + L +L+ LLL NN+L+ +++
Sbjct: 478 LPPALAALRCLEVLQASDNALENVD-GVANLP----RLQELLLCNNRLQQSAAIQPLVSC 532
Query: 268 KCLSELSLRDNPLV 281
L L+L+ N L
Sbjct: 533 PRLVLLNLQGNSLC 546
Score = 72.9 bits (178), Expect = 3e-14
Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 12/187 (6%)
Query: 43 IELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP 102
EL P N + I L+ + L + + F+ L+++D ++
Sbjct: 375 QELEPENKWCLL--TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432
Query: 103 LSTLIARNNLLTAESL-------PKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLY 155
S L + L + L + +LS N+L P + + L+ L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492
Query: 156 LGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESLPAS 213
+N+L +V + L +L L L N L +L L L N L
Sbjct: 493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551
Query: 214 ISNLKML 220
L +
Sbjct: 552 QERLAEM 558
Score = 65.2 bits (158), Expect = 1e-11
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 7/117 (5%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNF 101
+ +L + + + L L HN L P + L L S+N + ++
Sbjct: 452 DLTVLCHLEQLL---LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLP 508
Query: 102 PLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDI----PTLKYL 154
L L+ NN L + + + + L + NL GN L Q + P++ +
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 98.4 bits (245), Expect = 4e-23
Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 22/234 (9%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTL----IAR 109
P N L L A S F +L +++S N + + +A L L I +
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 110 NNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQI-LDIPTLKYLYLG-NNSLNHVPR 166
N L + + NL NL+ +S ++ P + L + N +++ + R
Sbjct: 89 ANNLL--YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146
Query: 167 E-INKLC-KLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKS 222
L + +L L N + +I F E + +N LE LP +
Sbjct: 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206
Query: 223 LLLHNNKLRTLPTEIITLKCLSEKLKSL-LLHNNKLRTLPTEIITLKCLSELSL 275
L + ++ +LP+ + E LK L L+ LPT + L L E SL
Sbjct: 207 LDISRTRIHSLPSYGL------ENLKKLRARSTYNLKKLPT-LEKLVALMEASL 253
Score = 96.4 bits (240), Expect = 2e-22
Identities = 46/233 (19%), Positives = 91/233 (39%), Gaps = 20/233 (8%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTLIARNNLLT 114
+ L + ++ P + N L ++ + + A + F L + N +
Sbjct: 10 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67
Query: 115 AESLPKDM-SNLKNLKVFNLS-GNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREI-NK 170
E + D+ SNL L + N L + +P L+YL + N + H+P
Sbjct: 68 -EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Query: 171 LCKLHVLSLGGN-SLTDIPD-TFGDL-YQLEALILSDNQLESLPASISN-LKMLKSLLLH 226
+ +L + N ++ I +F L ++ L L+ N ++ + S N ++ + L
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 227 NNKLRTLPTEII-TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDN 278
NN L LP ++ L + ++ +LP+ L+ L +L R
Sbjct: 187 NNNLEELPNDVFHGASGPVI----LDISRTRIHSLPSY--GLENLKKLRARST 233
Score = 57.1 bits (138), Expect = 3e-09
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 8/141 (5%)
Query: 41 TQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASK--FTNLRSLDLSNNRITHLPQAI 98
T I+ LP+ + + + + N+ N+ L L+ N I + +
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173
Query: 99 TNFP--LSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYL 154
N ++ NN L LP D+ + ++S ++ P L+ + L+
Sbjct: 174 FNGTQLDELNLSDNNNLE--ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231
Query: 155 YLGNNSLNHVPREINKLCKLH 175
N ++ L +
Sbjct: 232 STYNLKKLPTLEKLVALMEAS 252
Score = 54.1 bits (130), Expect = 3e-08
Identities = 31/134 (23%), Positives = 48/134 (35%), Gaps = 29/134 (21%)
Query: 172 CKLHVLSLGGNSLTDIP----------------------DTFGDLYQLEALILSDNQ-LE 208
C V + +T+IP F LE + +S N LE
Sbjct: 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 209 SLPASI-SNLKMLKSL-LLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEI-I 265
+ A + SNL L + + N L + E + L L+ LL+ N ++ LP I
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPE--AFQNLP-NLQYLLISNTGIKHLPDVHKI 125
Query: 266 TLKCLSELSLRDNP 279
L ++DN
Sbjct: 126 HSLQKVLLDIQDNI 139
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 94.7 bits (236), Expect = 2e-22
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 19/210 (9%)
Query: 78 FTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
F +L +T + +IA N+ + + + + N++ L L GN+
Sbjct: 18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYL---ALGGNK 74
Query: 138 LEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGDL 194
L L T L YL L N L +P + +KL L L L N L +PD F L
Sbjct: 75 LHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 195 YQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEI---ITLKCLSEKLKSL 250
L L L+ NQL+SLP + L L L L N+L++LP + +T +LK L
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT------QLKDL 186
Query: 251 LLHNNKLRTLPTEII-TLKCLSELSLRDNP 279
L+ N+L+++P + L L + L DNP
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 80.1 bits (198), Expect = 3e-17
Identities = 60/222 (27%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 23 SIKTLDFSYSSLDS----ETLATQIELLPNNDYNKKPENIDT------LLLYHNNLSFFP 72
+ S+ L + +++ NN K + I L L N L
Sbjct: 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS 79
Query: 73 --DNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKV 130
+ TNL L L+ N++ LP + + L NLK
Sbjct: 80 ALK---ELTNLTYLILTGNQLQSLPNGVFD-----------------------KLTNLKE 113
Query: 131 FNLSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP 188
L NQL+ P + D T L YL L +N L +P+ + +KL L L L N L +P
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 189 D-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
+ F L QL+ L L NQL+S+P + L L+ + LH+N
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 46.2 bits (110), Expect = 7e-06
Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 36/164 (21%)
Query: 22 VSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTN 80
++ L + + L S LPN ++K N+ L+L N L PD K TN
Sbjct: 85 TNLTYLILTGNQLQS---------LPNGVFDK-LTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 81 LRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ 140
L L+L++N++ LP+ + F L NL +LS NQL+
Sbjct: 135 LTYLNLAHNQLQSLPKGV--F---------------------DKLTNLTELDLSYNQLQS 171
Query: 141 FPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGN 182
P + D T LK L L N L VP + ++L L + L N
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 97.2 bits (242), Expect = 4e-22
Identities = 50/272 (18%), Positives = 93/272 (34%), Gaps = 19/272 (6%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF-TNL 81
++ L S L+ E + L N+ + + +
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278
Query: 82 RSLDLSNNRITHLPQ----AITNFPLSTLIARNNLLTAESLPKDM--SNLKNLKVFNLSG 135
L++ N IT + L +L+ + K+ S + + LS
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 136 NQLEQFPIQILDIPT-LKYLYLGNNSLNHVP-REINKLCKLHVLSLGGNSLTDIPDTFGD 193
+ + P+ +L N + + L +L L L N L +
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398
Query: 194 LYQLEALILSDNQLESLPASI-----SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLK 248
+ +L D L SL + + + + L L +N L +CL K+K
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-----RCLPPKVK 453
Query: 249 SLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L LHNN++ ++P ++ L+ L EL++ N L
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
Score = 94.9 bits (236), Expect = 2e-21
Identities = 53/257 (20%), Positives = 108/257 (42%), Gaps = 19/257 (7%)
Query: 9 SSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNL 68
++ F+ + + Y ++ + T+ +I+ +++ + +
Sbjct: 260 ETTWKCSVKLFQFFWPRPV--EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317
Query: 69 SFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLST--LIARNNLLTAESLPKDMSNL 125
F + S F + LS + + P S L N+ T +S+ + S L
Sbjct: 318 LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTL 376
Query: 126 KNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPR-EINKLC----KLHVLSLG 180
K L+ L N L+ F L + L + SLN + ++ C + VL+L
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436
Query: 181 GNSLTDIPDTFGDL-YQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEII- 238
N LT F L +++ L L +N++ S+P +++L+ L+ L + +N+L+++P +
Sbjct: 437 SNMLTG--SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFD 494
Query: 239 TLKCLSEKLKSLLLHNN 255
L L+ + LH+N
Sbjct: 495 RLT----SLQYIWLHDN 507
Score = 84.2 bits (208), Expect = 8e-18
Identities = 51/261 (19%), Positives = 90/261 (34%), Gaps = 32/261 (12%)
Query: 63 LYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDM 122
+ NL+ P + ++L LS N I+ L D+
Sbjct: 38 YSNRNLTHVPKDLP--PRTKALSLSQNSISELR-----------------------MPDI 72
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGG 181
S L L+V LS N++ + L+YL + +N L ++ + L L L
Sbjct: 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSF 130
Query: 182 NSLTDIPDT--FGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIIT 239
N +P FG+L +L L LS + L L +LL E +
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190
Query: 240 LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSD-MTYKPPSLLEL 298
L+ + + L+ H N L ++ + + L L L + L MT+
Sbjct: 191 LQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTFLSELTRGP 249
Query: 299 ASRTLKVHEIDYSQEHLPQNL 319
+ + I+ + + +
Sbjct: 250 TLLNVTLQHIETTWKCSVKLF 270
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 96.3 bits (240), Expect = 6e-22
Identities = 52/226 (23%), Positives = 86/226 (38%), Gaps = 23/226 (10%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
+ +L ++++++ K T L L ++N IT L ++ L+ L +N LT
Sbjct: 42 ATLTSLDCHNSSITDMTGI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT 98
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
D++ L L N N+L + + P L YL N+L + ++ +L
Sbjct: 99 N----LDVTPLTKLTYLNCDTNKLTKLDVSQN--PLLTYLNCARNTLTEID--VSHNTQL 150
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
L N D QL L S N++ L +S K+L L N + L
Sbjct: 151 TELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD 207
Query: 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+L L +NKL + + L L+ NPL
Sbjct: 208 LNQNI------QLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPL 245
Score = 92.1 bits (229), Expect = 1e-20
Identities = 51/246 (20%), Positives = 81/246 (32%), Gaps = 41/246 (16%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTA 115
+ L + N D + T L +LD S N+IT L ++ L+ L N +T
Sbjct: 149 QLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK 205
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
D++ L + S N+L + + L L Y N L + ++ L KL
Sbjct: 206 ----LDLNQNIQLTFLDCSSNKLTEIDVTPL--TQLTYFDCSVNPLTELD--VSTLSKLT 257
Query: 176 VLSLGGNSLTDIP--------------------DTFGDLYQLEALILSDNQLESLPASIS 215
L L +I QL L + L +S
Sbjct: 258 TLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LS 315
Query: 216 NLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSL 275
L L L+N +L L T KLKSL N ++ + + L+
Sbjct: 316 QNPKLVYLYLNNTELTELDVSHNT------KLKSLSCVNAHIQDFS-SVGKIPALNNNFE 368
Query: 276 RDNPLV 281
+ +
Sbjct: 369 AEGQTI 374
Score = 86.3 bits (214), Expect = 1e-18
Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 13/196 (6%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
+ L N L+ + T L D S N +T L + T L+TL L
Sbjct: 213 QLTFLDCSSNKLTEIDV--TPLTQLTYFDCSVNPLTELDVS-TLSKLTTLHCIQTDLLE- 268
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176
D+++ L F G + + + + L L + + +++ KL
Sbjct: 269 ---IDLTHNTQLIYFQAEGCRKIKE-LDVTHNTQLYLLDCQAAGITELD--LSQNPKLVY 322
Query: 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTE 236
L L LT++ +L++L + ++ S+ + L + + T+P E
Sbjct: 323 LYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKE 379
Query: 237 IITLKCLSEKLKSLLL 252
+T L+ + LL
Sbjct: 380 TLTNNSLTIAVSPDLL 395
Score = 58.9 bits (143), Expect = 1e-09
Identities = 35/149 (23%), Positives = 50/149 (33%), Gaps = 11/149 (7%)
Query: 132 NLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTF 191
L Q + F D + +L L L +S+TD+
Sbjct: 2 TLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-I 60
Query: 192 GDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLL 251
L L LI + N + +L +S L L +NKL L +T KL L
Sbjct: 61 EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPLT------KLTYLN 112
Query: 252 LHNNKLRTLPTEIITLKCLSELSLRDNPL 280
NKL L + L+ L+ N L
Sbjct: 113 CDTNKLTKLD--VSQNPLLTYLNCARNTL 139
Score = 38.1 bits (89), Expect = 0.004
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
+ L L + L+ S T L+SL N I L+
Sbjct: 319 KLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTI-- 374
Query: 117 SLPKDMSNLKNL------KVFNLSGNQLEQFPI--QILDIPTLKYLYLGNNSLN 162
++PK+ +L + + GN + P + D T + ++ N
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDN 428
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 93.2 bits (232), Expect = 1e-21
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 71 FPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLK 129
FPD N + + +T + ++TL A +T ++ + L NL
Sbjct: 13 FPD--PALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVT--TIE-GVQYLNNLI 66
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD 189
L NQ+ + ++ + L L N L +V I L + L L +TD+
Sbjct: 67 GLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP 124
Query: 190 TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKS 249
L L+ L L NQ+ ++ ++ L L+ L + N ++ +++ L LS KL +
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV----SDLTPLANLS-KLTT 177
Query: 250 LLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
L +NK+ + + +L L E+ L++N +
Sbjct: 178 LKADDNKISDIS-PLASLPNLIEVHLKNNQI 207
Score = 90.5 bits (225), Expect = 1e-20
Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 15/228 (6%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
+ I TL + ++ NL L+L +N+IT L + N ++ L N L
Sbjct: 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLK 98
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
++ L+++K +L+ Q+ + + L+ LYL N + ++ + L L
Sbjct: 99 N---VSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNL 153
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
LS+G ++D+ +L +L L DN++ + +++L L + L NN++
Sbjct: 154 QYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQI---- 207
Query: 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282
+++ L S L + L N + P + + + I
Sbjct: 208 SDVSPLANTS-NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254
Score = 60.5 bits (147), Expect = 2e-10
Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L N ++ + TNL+ L + N +++ L
Sbjct: 130 NLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT--------------------- 167
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV 176
++NL L N++ + +P L ++L NN ++ V + L +
Sbjct: 168 ----PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFI 221
Query: 177 LSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
++L ++T+ P + + + ++ + PA+IS+ S L N +
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 94.1 bits (234), Expect = 5e-21
Identities = 42/231 (18%), Positives = 71/231 (30%), Gaps = 19/231 (8%)
Query: 65 HNNLSFFPDNASKFTNLRSLDLSNNRITHLP-QAITNFP-LSTLIARNNLLTAESLPKDM 122
NL+ P L LS N I + + L L + +
Sbjct: 13 FCNLTQVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHV---PREINKLCKLHVLS 178
NL NL++ +L +++ + L L L L+ L L L
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129
Query: 179 LGGNSLTDIP--DTFGDLYQLEALILSDNQLESLPA-SISNLKM--LKSLLLHNNKLRTL 233
L N + + +FG L L+++ S NQ+ + + L+ L L N L +
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Query: 234 PTEIITLKCLSEK---LKSLLLHNNKLRTLPTEII--TLKCLSELSLRDNP 279
+ + L+ L + N T + SL
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Score = 91.0 bits (226), Expect = 7e-20
Identities = 50/256 (19%), Positives = 86/256 (33%), Gaps = 35/256 (13%)
Query: 57 NIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHL---PQAITNFP-LSTLIARNN 111
N+ L L + + F +A +L L L ++ N L+ L N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 112 LLTAESLPKDMSNLKNLKVFNLSGNQLEQFP---IQILDIPTLKYLYLGNNSLNHVPREI 168
+ + L L +LK + S NQ+ ++ L TL + L NSL
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 169 NKLC-------KLHVLSLGGNSLTDIPD-------------TFGDLYQLEALILSDNQLE 208
C L +L + GN T + + + + ++
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 209 SLPASI-SNLKM--LKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEII 265
+ + L ++ L L + + +L + + L LK L L NK+ + E
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSR--VFETLK-DLKVLNLAYNKINKIADEAF 310
Query: 266 T-LKCLSELSLRDNPL 280
L L L+L N L
Sbjct: 311 YGLDNLQVLNLSYNLL 326
Score = 90.2 bits (224), Expect = 1e-19
Identities = 44/215 (20%), Positives = 73/215 (33%), Gaps = 21/215 (9%)
Query: 82 RSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF 141
R +T +PQ + L+ N + L+ L++ L
Sbjct: 7 RIAFYRFCNLTQVPQVLNT--TERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 142 --PIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDI---PDTFGDLY 195
++P L+ L LG++ + + + L L L L L+D F +L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 196 QLEALILSDNQLESLP--ASISNLKMLKSLLLHNNKLRTLPTEIIT-LKCLSEKLKSLLL 252
L L LS NQ+ SL S L LKS+ +N++ + + L+ + L L
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT--LSFFSL 181
Query: 253 HNNKLRTLP-------TEIITLKCLSELSLRDNPL 280
N L + L L + N
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Score = 85.2 bits (211), Expect = 4e-18
Identities = 64/269 (23%), Positives = 98/269 (36%), Gaps = 41/269 (15%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLR 82
++TLD ++L T I +P+ I + L N L P
Sbjct: 363 KLQTLDLRDNAL------TTIHFIPS---------IPDIFLSGNKLVTLPKINL---TAN 404
Query: 83 SLDLSNNRITHLPQA--ITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139
+ LS NR+ +L + P L LI N ++ S + S +L+ L N L+
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464
Query: 140 QFPIQILD------IPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPDTFG 192
L + L+ LYL +N LN +P + + L L LSL N LT +
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND- 523
Query: 193 DLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLL 252
LE L +S NQL + + L L + +NK +C + L
Sbjct: 524 LPANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFIC--------ECELSTFINWLN 573
Query: 253 HNNKLRTLPTEIITLKCLSELSLRDNPLV 281
H N T+ + C+ S L
Sbjct: 574 HTNV--TIAGPPADIYCVYPDSFSGVSLF 600
Score = 52.1 bits (125), Expect = 2e-07
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 9/129 (6%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKL 230
+ +LT +P L E L+LS N + ++ AS L+ L+ L L +
Sbjct: 4 FDGRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 231 -RTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNPLVIRFVSDM 288
T+ E + L L+ L L ++K+ L + L L EL L L + D
Sbjct: 61 PLTIDKE--AFRNLP-NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117
Query: 289 TYKPPSLLE 297
++ L
Sbjct: 118 YFRNLKALT 126
Score = 49.8 bits (119), Expect = 1e-06
Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 17/194 (8%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNL 81
S++ L + L L + + ++ L L HN L+ P S T L
Sbjct: 452 SLEQLFLGENMLQLAWETE----LCWDVFEGLS-HLQVLYLNHNYLNSLPPGVFSHLTAL 506
Query: 82 RSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF 141
R L L++NR+T L L L N L + D+ +L V +++ N+
Sbjct: 507 RGLSLNSNRLTVLSHNDLPANLEILDISRNQLL--APNPDV--FVSLSVLDITHNKF--- 559
Query: 142 PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEAL 200
I + ++ N++ + + ++ S G SL + + + L++L
Sbjct: 560 ---ICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSL 616
Query: 201 ILSDNQLESLPASI 214
S + ++ ++
Sbjct: 617 KFSLFIVCTVTLTL 630
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 90.5 bits (225), Expect = 8e-21
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
F +L +T + +IA N+ + + + L N+ L+G
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNG 77
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
N+L + ++ L +L+L N + + + L KL LSL N ++DI L
Sbjct: 78 NKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDING-LVHLP 134
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNN 255
QLE+L L +N++ + +S L L +L L +N++ ++I+ L L+ KL++L L N
Sbjct: 135 QLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQI----SDIVPLAGLT-KLQNLYLSKN 188
Query: 256 KLRTLPTEIITLKCLSELSLRDNPLV 281
+ L + LK L L L +
Sbjct: 189 HISDL-RALAGLKNLDVLELFSQECL 213
Score = 87.0 bits (216), Expect = 1e-19
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 18/227 (7%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
+ID ++ ++++ N+ L L+ N++T + L L N +
Sbjct: 46 NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD 104
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
S + +LK LK +L N + ++ +P L+ LYLGNN + + +++L KL
Sbjct: 105 LS---SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLD 159
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
LSL N ++DI L +L+ L LS N + L A ++ LK L L L + + P
Sbjct: 160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217
Query: 236 EIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282
S L+ N ++ ++T + +S+ + P V
Sbjct: 218 NHQ----------SNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 254
Score = 33.5 bits (77), Expect = 0.098
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
+DTL L N +S + T L++L LS N I+ L L L + +
Sbjct: 157 KLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNK 215
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN 162
+ + + V N G+ + P I D + + +
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 93.0 bits (231), Expect = 9e-21
Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 24/251 (9%)
Query: 49 NDYNKKPENIDTLLLYHNNLSFFPDNASKF------TNLRSLDLSNNRITHLPQ----AI 98
+ K N L NN+ ++ + T + +SN ++
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270
Query: 99 TNFPLSTLIARNNLLTAESLPKDM--SNLKNLKVFNLSGNQLEQFPIQILDIPT-LKYLY 155
+ L L + P+ N+ + N + + + + +L
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330
Query: 156 LGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPDT---FGDLYQLEALILSDNQLESLP 211
NN L E L +L L L N L ++ + L+ L +S N +
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Query: 212 ASI--SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKC 269
S K L SL + +N L CL ++K L LH+NK++++P +++ L+
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFR-----CLPPRIKVLDLHSNKIKSIPKQVVKLEA 445
Query: 270 LSELSLRDNPL 280
L EL++ N L
Sbjct: 446 LQELNVASNQL 456
Score = 86.8 bits (215), Expect = 9e-19
Identities = 55/256 (21%), Positives = 113/256 (44%), Gaps = 17/256 (6%)
Query: 9 SSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNL 68
++ +S + V T+ Y S+ + L Q++ + + + + +
Sbjct: 231 ETTWNSFIRILQLVWHTTV--WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288
Query: 69 SFFPDNA-SKFTNL--RSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNL 125
F F+N+ ++ +S R+ H+ P L NNLLT ++ +L
Sbjct: 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV-FENCGHL 347
Query: 126 KNLKVFNLSGNQLEQFPIQI---LDIPTLKYLYLGNNSLNHVPREI--NKLCKLHVLSLG 180
L+ L NQL++ + +L+ L + NS+++ ++ + L L++
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407
Query: 181 GNSLTDIPDTFGDL-YQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIIT 239
N LTD F L +++ L L N+++S+P + L+ L+ L + +N+L+++P I
Sbjct: 408 SNILTDTI--FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI-- 463
Query: 240 LKCLSEKLKSLLLHNN 255
L+ L+ + LH N
Sbjct: 464 FDRLT-SLQKIWLHTN 478
Score = 80.3 bits (198), Expect = 1e-16
Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 13/256 (5%)
Query: 83 SLDLSNNRITHLPQAITNFPLST--LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ 140
+D S N + H+P + T L N ++ D+ +L L++ +S N+++
Sbjct: 4 LVDRSKNGLIHVP---KDLSQKTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQY 59
Query: 141 FPIQILD-IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDT--FGDLYQL 197
I + L+YL L +N L + + L L L N+ +P FG++ QL
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 198 EALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNK 256
+ L LS LE I++L + K LL+ +E L + N +
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 257 LRTLPTEII-TLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEHL 315
+ + T+ L +++ + ++ L ++ I+ +
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 316 PQNLVQYLESAHHCVN 331
+ L + +
Sbjct: 238 IRILQLVWHTTVWYFS 253
Score = 69.5 bits (170), Expect = 5e-13
Identities = 48/302 (15%), Positives = 97/302 (32%), Gaps = 28/302 (9%)
Query: 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFT 79
+ L+ S I L +D + L++ HN + + +
Sbjct: 20 SQKTTILNISQ---------NYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQ 69
Query: 80 NLRSLDLSNNRITHLP-QAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
L LDLS+N++ + N L L N A + K+ N+ LK LS L
Sbjct: 70 ELEYLDLSHNKLVKISCHPTVN--LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
Query: 139 EQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLE 198
E+ + + + + L + L + SL T+ F
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF------- 180
Query: 199 ALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLR 258
IL + +SN+K + + L L K + L ++ N
Sbjct: 181 --ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238
Query: 259 TLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEHLPQN 318
+ ++ + S+ + + + ++ + + L +H++ PQ+
Sbjct: 239 RILQ-LVWHTTVWYFSISNV----KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293
Query: 319 LV 320
+
Sbjct: 294 YI 295
Score = 59.1 bits (143), Expect = 1e-09
Identities = 39/294 (13%), Positives = 80/294 (27%), Gaps = 23/294 (7%)
Query: 23 SIKTLDFSYSSLDS---------ETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPD 73
+K L S + L+ + L + PE + ++ F +
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 74 NASKF----TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLK 129
F + +L + I + + +++A+ S +
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235
Query: 130 VFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD 189
F + + I +K G L L + + +
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQ--GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293
Query: 190 -TFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKL 247
+ + + + + S + L NN L E +L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH---LTEL 350
Query: 248 KSLLLHNNKLRTLPTEI---ITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLEL 298
++L+L N+L+ L +K L +L + N + SLL L
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 88.9 bits (221), Expect = 2e-20
Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 21/233 (9%)
Query: 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFP-LSTL-IARNNLLTA 115
+ + ++ P S + ++L L + +P A +N P +S + ++ + L
Sbjct: 14 EDFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ- 69
Query: 116 ESLPKDM-SNLKNLKVFNLSGNQ-LEQFPIQILD-IPTLKYLYLGNNSLNHVP--REINK 170
L NL + + + L L +P LK+L + N L P ++
Sbjct: 70 -QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 171 LCKLHVLSLGGNS-LTDIP-DTFGDLY-QLEALILSDNQLESLPASISNLKMLKSLLLH- 226
+L + N +T IP + F L + L L +N S+ N L ++ L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188
Query: 227 NNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
N L + + + L + + LP++ L+ L EL R+
Sbjct: 189 NKYLTVIDKD--AFGGVYSGPSLLDVSQTSVTALPSKG--LEHLKELIARNTW 237
Score = 75.8 bits (187), Expect = 5e-16
Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 35/208 (16%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGN- 136
++ I +P + TL L ++P SNL N+ +S +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPS--TQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDV 66
Query: 137 QLEQFPIQILD-IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP-DTFGDL 194
L+Q + + ++ + N +LT I D +L
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNT----------------------RNLTYIDPDALKEL 104
Query: 195 YQLEALILSDNQLESLPA--SISNLKMLKSL-LLHNNKLRTLPTEIITLKCLSEKLKSLL 251
L+ L + + L+ P + + + L + N + ++P + L + +L
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN--AFQGLCNETLTLK 162
Query: 252 LHNNKLRTLPTEIITLKCLSELSLRDNP 279
L+NN ++ L + L N
Sbjct: 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNK 190
Score = 45.0 bits (107), Expect = 1e-05
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 41 TQIELLPNNDYNKKPENIDTLLLYHNN-LSFFPDNA-SKFTN-LRSLDLSNNRITHLPQA 97
T +++ P+ + L + N ++ P NA N +L L NN T +
Sbjct: 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174
Query: 98 ITNFPLSTL----IARNNLLTAESLPKDM-SNLKN-LKVFNLSGNQLEQFPIQILDIPTL 151
F + L + +N LT + KD + + + ++S + P + L+ L
Sbjct: 175 A--FNGTKLDAVYLNKNKYLT--VIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE--HL 228
Query: 152 KYLYLGNN 159
K L N
Sbjct: 229 KELIARNT 236
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 87.8 bits (218), Expect = 2e-20
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 147 DIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILS 203
++P + + L N++ +P + KL + L N ++++ D F L L +L+L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 204 DNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEII-TLKCLSEKLKSLLLHNNKLRTLP 261
N++ LP S+ L L+ LLL+ NK+ L + L L L L++NKL+T+
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH----NLNLLSLYDNKLQTIA 144
Query: 262 TEIIT-LKCLSELSLRDNPL 280
+ L+ + + L NP
Sbjct: 145 KGTFSPLRAIQTMHLAQNPF 164
Score = 83.2 bits (206), Expect = 1e-18
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 48/177 (27%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
PE I + L N + P A S + LR +DLSNN+I+ L F
Sbjct: 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--F------------ 76
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVPREINKLC 172
L++L L GN++ + P + + + +L+ L L N +N +
Sbjct: 77 ---------QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR------- 120
Query: 173 KLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
D F DL+ L L L DN+L+++ S L+ ++++ L N
Sbjct: 121 ---------------VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 88.5 bits (220), Expect = 3e-20
Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 21/228 (9%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
N L +++ + + + +++ + N+ I L + F L L +N ++
Sbjct: 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQIS 76
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
+ +L L+ +++ N+L+ + + L L+L NN L + L L
Sbjct: 77 D---LSPLKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFLDNNELRDTD-SLIHLKNL 130
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
+LS+ N L I G L +LE L L N++ + ++ LK + + L K P
Sbjct: 131 EILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKCVNEP 188
Query: 235 TEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVI 282
+ + L N ++ I+ +S + V+
Sbjct: 189 VKY----------QPELYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226
Score = 79.3 bits (196), Expect = 4e-17
Identities = 47/208 (22%), Positives = 78/208 (37%), Gaps = 16/208 (7%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134
N +L +T L + + N+ + + M NLK +LS
Sbjct: 16 PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLS 71
Query: 135 GNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDL 194
NQ+ + D+ L+ L + N L ++ L L L N L D D+ L
Sbjct: 72 HNQISDLS-PLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHL 127
Query: 195 YQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254
LE L + +N+L+S+ + L L+ L LH N++ T L L K+ + L
Sbjct: 128 KNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEI----TNTGGLTRLK-KVNWIDLTG 181
Query: 255 NKLRTLPTEIIT-LKCLSELSLRDNPLV 281
K P + L + + D +
Sbjct: 182 QKCVNEPVKYQPELYITNTVKDPDGRWI 209
Score = 68.5 bits (168), Expect = 3e-13
Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 7/182 (3%)
Query: 53 KKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNL 112
+ N+ L L HN +S T L L ++ NR+ +L I + LS L NN
Sbjct: 60 QFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLN-GIPSACLSRLFLDNNE 117
Query: 113 LTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLC 172
L + +LKNL++ ++ N+L+ + + L+ L L N + + + +L
Sbjct: 118 LRD---TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG-GLTRLK 172
Query: 173 KLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
K++ + L G + P + + + + P ISN +
Sbjct: 173 KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVY 232
Query: 233 LP 234
Sbjct: 233 TD 234
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 86.7 bits (215), Expect = 1e-19
Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P + + L L L+ D T L L+L N++ L +
Sbjct: 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV--------------- 78
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKL 171
+L L L+ NQL P+ + D T L LYLG N L +P + ++L
Sbjct: 79 --------FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130
Query: 172 CKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
KL L L N L IP F L L+ L LS NQL+S+P L L+++ L N
Sbjct: 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 84.4 bits (209), Expect = 8e-19
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 83 SLDLSNNRITHLPQAITNFPLST--LIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQ 140
+D + +P + P T L ++ L S L L NL NQL+
Sbjct: 18 EVDCQGKSLDSVP---SGIPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQT 73
Query: 141 FPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGDLYQL 197
+ D T L L L NN L +P + + L +L L LGGN L +P F L +L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 198 EALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIIT-LKCLSEKLKSLLLHNN 255
+ L L+ NQL+S+PA L L++L L N+L+++P L KL+++ L N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG----KLQTITLFGN 189
Score = 79.4 bits (196), Expect = 3e-17
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 133 LSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD- 189
L L T L +L L N L + + + L +L L L N L +P
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101
Query: 190 TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIIT-LKCLSEKL 247
F L QL+ L L NQL+SLP+ + L LK L L+ N+L+++P L L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL----TNL 157
Query: 248 KSLLLHNNKLRTLPTEIIT-LKCLSELSLRDNP 279
++L L N+L+++P L L ++L N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 75.5 bits (186), Expect = 9e-16
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 148 IPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSD 204
IP + L L + L + L KL L+L N L + F DL +L L L++
Sbjct: 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92
Query: 205 NQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEI---ITLKCLSEKLKSLLLHNNKLRTL 260
NQL SLP + +L L L L N+L++LP+ + +T KLK L L+ N+L+++
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSI 146
Query: 261 PTEIIT-LKCLSELSLRDNPL 280
P L L LSL N L
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQL 167
Score = 51.2 bits (123), Expect = 1e-07
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAI-- 98
Q++ L ++ + TL L +N L+ P T L L L N++ LP +
Sbjct: 70 QLQTLSAGVFDD-LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 99 --TNFPLSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYL 154
T L L N L S+P L NL+ +LS NQL+ P D + L+ +
Sbjct: 129 RLTK--LKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Query: 155 YLGNN 159
L N
Sbjct: 185 TLFGN 189
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 85.9 bits (213), Expect = 1e-19
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 147 DIPT-LKYLYLGNNSLNHVPRE--INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALIL 202
IP L L NN + KL +L ++ N +TDI + F + ++L
Sbjct: 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88
Query: 203 SDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP 261
+ N+LE++ + L+ LK+L+L +N++ + + + LS ++ L L++N++ T+
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND--SFIGLS-SVRLLSLYDNQITTVA 145
Query: 262 TEI-ITLKCLSELSLRDNPL 280
TL LS L+L NP
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165
Score = 80.5 bits (199), Expect = 1e-17
Identities = 35/178 (19%), Positives = 55/178 (30%), Gaps = 49/178 (27%)
Query: 55 PENIDTLLLYHNNLSFFPDNA--SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNL 112
P+ L L +N + K LR ++ SNN+IT +
Sbjct: 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE----------------- 73
Query: 113 LTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLC 172
+ L+ N+LE ++ L
Sbjct: 74 ------EGAFEGASGVNEILLTSNRLENVQHKMFK----------------------GLE 105
Query: 173 KLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
L L L N +T + D+F L + L L DNQ+ ++ L L +L L N
Sbjct: 106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 85.3 bits (211), Expect = 7e-19
Identities = 52/223 (23%), Positives = 80/223 (35%), Gaps = 26/223 (11%)
Query: 78 FTNLRSLDLSNNRITHL-PQAITNFPLSTL----IARNNLLTAESLPKDMSNL--KNLKV 130
+ L+ L L N +T P + L + + T ++ ++ LKV
Sbjct: 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153
Query: 131 FNLSGNQLEQFPIQILDI-PTLKYLYLGNNSLNHVPREINKLC-----KLHVLSLGGNSL 184
+++ F + + + P L L L +N I+ LC L VL+L +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 185 TDIPDT----FGDLYQLEALILSDNQLESLPASI--SNLKMLKSLLLHNNKLRTLPTEII 238
QL+ L LS N L + L SL L L+ +P
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP---- 269
Query: 239 TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281
K L KL L L N+L P L + LSL+ NP +
Sbjct: 270 --KGLPAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFL 309
Score = 73.8 bits (181), Expect = 7e-15
Identities = 49/231 (21%), Positives = 74/231 (32%), Gaps = 19/231 (8%)
Query: 68 LSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPK-----DM 122
+ + S L+ +D + + I + L L R + + L +
Sbjct: 36 VELYGGGRSLEYLLKRVDTEAD-LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLC-----KLHVL 177
S L+ L + NL P+ P L L L N S + +L L VL
Sbjct: 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154
Query: 178 SLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLPASIS-----NLKMLKSLLLHNNKLR 231
S+ + + L L LSDN IS L+ L L N +
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214
Query: 232 TLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIIT--LKCLSELSLRDNPL 280
T L +L+ L L +N LR L+ L+L L
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Score = 60.3 bits (146), Expect = 2e-10
Identities = 37/168 (22%), Positives = 55/168 (32%), Gaps = 35/168 (20%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNAS----KF 78
++ TLD S + E L + K + L L + + S
Sbjct: 174 ALSTLDLSDNPELGERG------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
L+ LDLS+N + A + L NLS L
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS----------------------CDWPSQLNSLNLSFTGL 265
Query: 139 EQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
+Q P + L L L N L+ P ++L ++ LSL GN D
Sbjct: 266 KQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310
Score = 39.5 bits (92), Expect = 0.001
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 11/107 (10%)
Query: 8 SSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNN 67
+ S + + V ++ LD S++SL P +++L L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRD---------AAGAPSCDWPSQLNSLNLSFTG 264
Query: 68 LSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
L P L LDLS NR+ P + L + N
Sbjct: 265 LKQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL 309
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 74.3 bits (183), Expect = 8e-16
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 148 IPT-LKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSDN 205
IP + LYL N VP+E++ L ++ L N ++ + + +F ++ QL LILS N
Sbjct: 29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 206 QLESLPASI-SNLKMLKSLLLHNNKLRTLPTEII-TLKCLSEKLKSLLLHNN 255
+L +P LK L+ L LH N + +P L L L + N
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS----ALSHLAIGAN 136
Score = 71.9 bits (177), Expect = 6e-15
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLP 234
L L GN T +P + L + LS+N++ +L SN+ L +L+L N+LR +P
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 235 TEII-TLKCLSEKLKSLLLHNNKLRTLPTEII-TLKCLSELSLRDNPL 280
LK L+ L LH N + +P L LS L++ NPL
Sbjct: 95 PRTFDGLK----SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 62.3 bits (152), Expect = 1e-11
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 133 LSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-T 190
L GNQ P ++ + L + L NN ++ + + + + +L L L N L IP T
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
Query: 191 FGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
F L L L L N + +P ++L L L + N
Sbjct: 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 60.0 bits (146), Expect = 8e-11
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAI----TNFPLSTLIARN 110
P ++ L L N + P S + +L +DLSNNRI+ L T L TLI
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ--LLTLILSY 87
Query: 111 NLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNN 159
N L +P LK+L++ +L GN + P + + L +L +G N
Sbjct: 88 NRLR--CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 74.2 bits (183), Expect = 8e-16
Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLT 114
++ + L + N++ N++ L ++N T+ I+ L L +T
Sbjct: 44 NSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVT 101
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQ-ILDIPTLKYLYLGNNSLNHVPREINKLCK 173
++ +P ++S L +L + ++S + + + I +P + + L N + L +
Sbjct: 102 SDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160
Query: 174 LHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL 210
L L++ + + D D +L L +
Sbjct: 161 LKSLNIQFDGVHDYRG-IEDFPKLNQLYAFSQTIGGK 196
Score = 72.3 bits (178), Expect = 4e-15
Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 13/197 (6%)
Query: 89 NRITHLPQAITNFPLSTLIARNNLLTAESLPKD--MSNLKNLKVFNLSGNQLEQF-PIQI 145
Q N P ST A N L +S + + + +L L+ + I+
Sbjct: 5 QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEY 64
Query: 146 LDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLEALILSD 204
+K L + N + I+ L L L + G +T L L L +S
Sbjct: 65 A--HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121
Query: 205 NQLESLPAS-ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE 263
+ + + I+ L + S+ L N T + TL +LKSL + + +
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP----ELKSLNIQFDGVHDY-RG 176
Query: 264 IITLKCLSELSLRDNPL 280
I L++L +
Sbjct: 177 IEDFPKLNQLYAFSQTI 193
Score = 71.9 bits (177), Expect = 5e-15
Identities = 26/184 (14%), Positives = 62/184 (33%), Gaps = 33/184 (17%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
++ +L + L+N +T L + N+K ++
Sbjct: 41 AQMNSLTYITLANINVTDL-------------------------TGIEYAHNIKDLTINN 75
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSL-NHVPREINKLCKLHVLSLGGNSLTDI-PDTFGD 193
+ I + L+ L + + + ++ L L +L + ++ D
Sbjct: 76 IHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
Query: 194 LYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLH 253
L ++ ++ LS N + + L LKSL + + + + ++ KL L
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV----HDYRGIEDFP-KLNQLYAF 189
Query: 254 NNKL 257
+ +
Sbjct: 190 SQTI 193
Score = 66.1 bits (162), Expect = 7e-13
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 9/169 (5%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGN 182
S K L + I + +L Y+ L N ++ + I + L++
Sbjct: 20 STFKAYLNGLLGQSSTA--NITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI 76
Query: 183 SLTDIPDTFGDLYQLEALILSDNQLESLPAS-ISNLKMLKSLLLHNNKLRTLPTEIITLK 241
T+ + L LE L + + S +S L L L + ++ + + +
Sbjct: 77 HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD--SILTKIN 133
Query: 242 CLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV-IRFVSDMT 289
L K+ S+ L N T + TL L L+++ + + R + D
Sbjct: 134 TLP-KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP 181
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 74.7 bits (184), Expect = 9e-16
Identities = 48/137 (35%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 148 IPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSD 204
IPT + LYL +N + + + + L L L LG N L +P F L QL L L
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 205 NQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTE 263
NQL LP+++ L LK L + NKL LP I L L L L N+L+++P
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT----HLTHLALDQNQLKSIPHG 153
Query: 264 II-TLKCLSELSLRDNP 279
L L+ L NP
Sbjct: 154 AFDRLSSLTHAYLFGNP 170
Score = 72.4 bits (178), Expect = 6e-15
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 129 KVFNLSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTD 186
++ L NQ+ + + D LK LYLG+N L +P + + L +L VL LG N LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 187 IPD-TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEII-TLKCLS 244
+P F L L+ L + N+L LP I L L L L N+L+++P L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS--- 159
Query: 245 EKLKSLLLHNN 255
L L N
Sbjct: 160 -SLTHAYLFGN 169
Score = 67.8 bits (166), Expect = 3e-13
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 176 VLSLGGNSLTDIPDT-FGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTL 233
+L L N +T + F L L+ L L NQL +LP + +L L L L N+L L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 234 PTEI---ITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
P+ + + LK L + NKL LP I L L+ L+L N L
Sbjct: 104 PSAVFDRLV------HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 57.0 bits (138), Expect = 1e-09
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAI----TNFPLSTLIAR 109
P N L L+ N ++ NL+ L L +N++ LP + T L+ L
Sbjct: 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ--LTVLDLG 96
Query: 110 NNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI 168
N LT LP + L +LK + N+L + P I + L +L L N L +P
Sbjct: 97 TNQLT--VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 169 -NKLCKLHVLSLGGN 182
++L L L GN
Sbjct: 155 FDRLSSLTHAYLFGN 169
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 69.3 bits (170), Expect = 6e-14
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 14/140 (10%)
Query: 148 IPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALILSD 204
IP YL L NSL +P + ++L L L LGGN L +P+ F L L L LS
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 205 NQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEI---ITLKCLSEKLKSLLLHNNKLRTL 260
NQL+SLP + L LK L L+ N+L++LP + +T +LK L L+ N+L+++
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT------QLKDLRLYQNQLKSV 139
Query: 261 PTEII-TLKCLSELSLRDNP 279
P + L L + L DNP
Sbjct: 140 PDGVFDRLTSLQYIWLHDNP 159
Score = 66.2 bits (162), Expect = 7e-13
Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 48/177 (27%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P L L N+L P+ + T+L L L N++ LP + N
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN------------- 73
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173
L +L NLS NQL+ P + D KL +
Sbjct: 74 ----------KLTSLTYLNLSTNQLQSLPNGVFD----------------------KLTQ 101
Query: 174 LHVLSLGGNSLTDIPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
L L+L N L +PD F L QL+ L L NQL+S+P + L L+ + LH+N
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 71.5 bits (176), Expect = 1e-13
Identities = 62/304 (20%), Positives = 104/304 (34%), Gaps = 57/304 (18%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF---- 78
I++LD L A ELLP + + L L+
Sbjct: 4 DIQSLDIQCEELSDARWA---ELLPLL------QQCQVVRLDDCGLT--EARCKDISSAL 52
Query: 79 ---TNLRSLDLSNNRIT-----HLPQAI--TNFPLSTLIARNNLLT---AESLPKDMSNL 125
L L+L +N + + Q + + + L +N LT L + L
Sbjct: 53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 112
Query: 126 KNLKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLN-----HVPREINKLCKL 174
L+ +LS N L +Q+L L+ L L SL+ + +
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 175 HVLSLGGNSLTD-----IPDTFGD-LYQLEALILSDNQL-----ESLPASISNLKMLKSL 223
L++ N + + + D QLEAL L + L +++ L+ L
Sbjct: 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232
Query: 224 LLHNNKLRTLPTEII--TLKCLSEKLKSLLLHNNKL-----RTLPTEIITLKCLSELSLR 276
L +NKL + + L S +L++L + + L + + L ELSL
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292
Query: 277 DNPL 280
N L
Sbjct: 293 GNEL 296
Score = 61.5 bits (150), Expect = 1e-10
Identities = 52/302 (17%), Positives = 99/302 (32%), Gaps = 49/302 (16%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-----FFPDNASK 77
++ L+ + L + ++ L I L L + L+
Sbjct: 57 ALAELNLRSNELGDVGVHCVLQGLQTP-----SCKIQKLSLQNCCLTGAGCGVLSSTLRT 111
Query: 78 FTNLRSLDLSNNRIT-----HLPQAI--TNFPLSTLIARNNLLT---AESLPKDMSNLKN 127
L+ L LS+N + L + + L L L+ E L + +
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171
Query: 128 LKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLN-----HVPREINKLCKLHV 176
K +S N + + +++L L+ L L + + + + L
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 177 LSLGGNSLTD------IPDTFGDLYQLEALILSDNQL-----ESLPASISNLKMLKSLLL 225
L+LG N L D P +L L + + + L + + LK L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291
Query: 226 HNNKLRTLPTEII--TLKCLSEKLKSLLLHNNKL-----RTLPTEIITLKCLSELSLRDN 278
N+L ++ TL +L+SL + + + + + L EL + +N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
Query: 279 PL 280
L
Sbjct: 352 RL 353
Score = 59.6 bits (145), Expect = 7e-10
Identities = 58/302 (19%), Positives = 106/302 (35%), Gaps = 49/302 (16%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA-----SK 77
+++ L S + L L E L + ++ L L + +LS
Sbjct: 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCR-----LEKLQLEYCSLSAASCEPLASVLRA 168
Query: 78 FTNLRSLDLSNNRI-----THLPQAI--TNFPLSTLIARNNLLT---AESLPKDMSNLKN 127
+ + L +SNN I L Q + + L L + +T L +++ +
Sbjct: 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228
Query: 128 LKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSL-----NHVPREINKLCKLHV 176
L+ L N+L + L L+ L++ + + R + L
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 177 LSLGGNSLTD-----IPDTFGD-LYQLEALILSDNQL-----ESLPASISNLKMLKSLLL 225
LSL GN L D + +T + QLE+L + + ++ + L L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348
Query: 226 HNNKLRTLPTEII--TLKCLSEKLKSLLLHNNKL-----RTLPTEIITLKCLSELSLRDN 278
NN+L + L L+ L L + + +L ++ L EL L +N
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408
Query: 279 PL 280
L
Sbjct: 409 CL 410
Score = 50.3 bits (121), Expect = 6e-07
Identities = 48/261 (18%), Positives = 82/261 (31%), Gaps = 83/261 (31%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
+++SLD+ ++ + + L+ +V L L
Sbjct: 3 LDIQSLDIQCEELS----------------------DARWAELLPLLQQCQVVRLDDCGL 40
Query: 139 EQFPIQIL-----DIPTLKYLYLGNNSLNHVPREINKL--------CKLHVLSLGGNSLT 185
+ + + P L L L +N L ++ + CK+ LSL LT
Sbjct: 41 TEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98
Query: 186 D-----IPDTFGDLYQLEALILSDNQL--------------------------------- 207
+ T L L+ L LSDN L
Sbjct: 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158
Query: 208 -ESLPASISNLKMLKSLLLHNNKLRTLPTEII--TLKCLSEKLKSLLLHNNKL-----RT 259
E L + + K L + NN + ++ LK +L++L L + + R
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218
Query: 260 LPTEIITLKCLSELSLRDNPL 280
L + + L EL+L N L
Sbjct: 219 LCGIVASKASLRELALGSNKL 239
Score = 49.6 bits (119), Expect = 1e-06
Identities = 52/302 (17%), Positives = 92/302 (30%), Gaps = 76/302 (25%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF---- 78
K L S + ++ + + L ++ ++ L L ++ DN
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQ-----LEALKLESCGVT--SDNCRDLCGIV 223
Query: 79 ---TNLRSLDLSNNRIT-----HLPQAI--TNFPLSTLIARNNLLT---AESLPKDMSNL 125
+LR L L +N++ L + + L TL +T L + +
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283
Query: 126 KNLKVFNLSGNQLE--------------QFPIQILDI--------------------PTL 151
++LK +L+GN+L ++ L + L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343
Query: 152 KYLYLGNNSLNHV------PREINKLCKLHVLSLGGNSLTD-----IPDTFGDLYQLEAL 200
L + NN L L VL L ++D + T + L L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403
Query: 201 ILSDNQLESLPASISNLKMLKSLLLHNN-KLRTLPTEIITLKCLSEK-LKSLLLHNNKLR 258
LS+N L + + L + L L I E L++L LR
Sbjct: 404 DLSNNCLGD-----AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 458
Query: 259 TL 260
+
Sbjct: 459 VI 460
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 67.4 bits (165), Expect = 2e-13
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 167 EINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLH 226
+ + L L G + I + L Q +A+ SDN++ L L+ LK+LL++
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVN 72
Query: 227 NNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT--EIITLKCLSELSLRDNPLV 281
NN++ + L L L+L NN L L + +LK L+ L + NP+
Sbjct: 73 NNRICRIGE---GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Score = 52.4 bits (126), Expect = 2e-08
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 30/140 (21%)
Query: 54 KPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
L L + + + ++D S+N I + FP
Sbjct: 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK----LDGFP----------- 61
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNN---SLNHVPREIN 169
L+ LK ++ N++ + + +P L L L NN L + +
Sbjct: 62 ----------LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA 110
Query: 170 KLCKLHVLSLGGNSLTDIPD 189
L L L + N +T+
Sbjct: 111 SLKSLTYLCILRNPVTNKKH 130
Score = 51.6 bits (124), Expect = 4e-08
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 29/148 (19%)
Query: 84 LDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPI 143
+ L+ I Q +N + +L G ++
Sbjct: 2 VKLTAELIEQAAQ-------------------------YTNAVRDRELDLRGYKIPVIEN 36
Query: 144 QILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGD-LYQLEALIL 202
+ + +N + + L +L L + N + I + L L LIL
Sbjct: 37 LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95
Query: 203 SDNQLESLP--ASISNLKMLKSLLLHNN 228
++N L L +++LK L L + N
Sbjct: 96 TNNSLVELGDLDPLASLKSLTYLCILRN 123
Score = 34.6 bits (80), Expect = 0.023
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 202 LSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP 261
L+ +E +N + L L K+ I L ++ ++ +N++R L
Sbjct: 4 LTAELIEQAA-QYTNAVRDRELDLRGYKI----PVIENLGATLDQFDAIDFSDNEIRKLD 58
Query: 262 TEIITLKCLSELSLRDN 278
L+ L L + +N
Sbjct: 59 G-FPLLRRLKTLLVNNN 74
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 65.4 bits (160), Expect = 1e-12
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 176 VLSLGGNSLTDIPDT--FGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRT 232
L L N L I FG L L L L NQL + + ++ L L NK++
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 233 LPTEIIT-LKCLSEKLKSLLLHNNKLRTLPTEII-TLKCLSELSLRDNPL 280
+ ++ L +LK+L L++N++ + L L+ L+L NP
Sbjct: 93 ISNKMFLGLH----QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 64.6 bits (158), Expect = 2e-12
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 147 DIPT-LKYLYLGNNSLNHVPRE--INKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEALIL 202
DIP L L +N L + + +L L L L N LT I F ++ L L
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85
Query: 203 SDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEII-TLKCLSEKLKSLLLHNN 255
+N+++ + + L LK+L L++N++ + L L SL L +N
Sbjct: 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN----SLTSLNLASN 136
Score = 52.7 bits (127), Expect = 2e-08
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 55 PENIDTLLLYHNNLSFFPDNA--SKFTNLRSLDLSNNRITHLPQAI----TNFPLSTLIA 108
P + LLL N L + + +L L+L N++T + ++ + L
Sbjct: 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH--IQELQL 85
Query: 109 RNNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLN 162
N + + M L LK NL NQ+ + + +L L L +N N
Sbjct: 86 GENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 67.1 bits (163), Expect = 2e-12
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 182 NSLTDIPDTFGDLYQLEALILSDNQ-LESLPA-SISNLKMLKSLLLHNNKLRTLPTEIIT 239
+ D L L + + Q L+ L + L L++L + + LR + +
Sbjct: 18 DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD--A 75
Query: 240 LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLV 281
+L L L N L +L + + L EL L NPL
Sbjct: 76 FHFTP-RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 60.1 bits (145), Expect = 3e-10
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 134 SGNQLEQFPIQILDIPTLKYLYL-GNNSLNHVPRE-INKLCKLHVLSLGGNSLTDI-PDT 190
+ + + L LY+ L H+ + L +L L++ + L + PD
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 191 FGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
F +L L LS N LESL L+ L+L N L
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 57.8 bits (139), Expect = 2e-09
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 65 HNNLSFFPDNASKFTNLRSLDLS-NNRITHLP-QAITNFP-LSTLIARNNLLTAESLPKD 121
+ + NL L + + HL + + L L + L + D
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPD 74
Query: 122 M-SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN 162
L NLS N LE + + +L+ L L N L+
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 28.2 bits (62), Expect = 5.6
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 42 QIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT 92
+ + + ++ P + L L N L + +L+ L LS N +
Sbjct: 67 GLRFVAPDAFHFTP-RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 64.7 bits (158), Expect = 2e-12
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 154 LYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPAS 213
L+ + + ++ L L+L N++ I + + L L L N ++ +
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIENL 88
Query: 214 ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP--TEIITLKCLS 271
+ L+ L + N++ +L ++ L L+ L + NNK+ ++ L L
Sbjct: 89 DAVADTLEELWISYNQIASLSG----IEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 272 ELSLRDNPLV 281
+L L NPL
Sbjct: 144 DLLLAGNPLY 153
Score = 64.3 bits (157), Expect = 3e-12
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGN 182
+ + ++ + +E+ + + K+L L N++ + ++ + L +LSLG N
Sbjct: 23 TEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRN 80
Query: 183 SLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKC 242
+ I + LE L +S NQ+ SL + I L L+ L + NNK+ EI L
Sbjct: 81 LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW-GEIDKLAA 138
Query: 243 LSEKLKSLLLHNNKL 257
L KL+ LLL N L
Sbjct: 139 LD-KLEDLLLAGNPL 152
Score = 62.0 bits (151), Expect = 1e-11
Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 29/182 (15%)
Query: 48 NNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLI 107
+ + E ++ L + S + L LS N I +
Sbjct: 18 KSVVATEAEKVE-LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI------------- 63
Query: 108 ARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPRE 167
+S ++NL++ +L N +++ TL+ L++ N + +
Sbjct: 64 ------------SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SG 110
Query: 168 INKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLL 225
I KL L VL + N +T+ + L +LE L+L+ N L + + + ++
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170
Query: 226 HN 227
Sbjct: 171 KR 172
Score = 47.0 bits (112), Expect = 2e-06
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
N+ L L N + + + L L +S N+I L L L NN +T
Sbjct: 71 NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQ-----------ILDIPTLKYL 154
++ L L+ L+GN L + + +P LK L
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 64.2 bits (157), Expect = 2e-12
Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 129 KVFNLSGNQLEQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTD 186
L N+L+ P + D T L L L N + +P + +KL KL +L L N L
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 187 IPD-TFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNN 228
+P+ F L QL+ L L NQL+S+P I L L+ + LH N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 61.9 bits (151), Expect = 1e-11
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 176 VLSLGGNSLTDIPDT-FGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTL 233
L L N L +P F L QL L LS NQ++SLP + L L L LH NKL++L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 234 PTEII-TLKCLSEKLKSLLLHNNKLRTLPTEII-TLKCLSELSLRDNP 279
P + L +LK L L N+L+++P I L L ++ L NP
Sbjct: 92 PNGVFDKLT----QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
Score = 47.6 bits (114), Expect = 1e-06
Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAI----TNFPLSTLIAR 109
P + L L N L P K T L L LS N+I LP + T L+ L
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK--LTILYLH 84
Query: 110 NNLLTAESLPKDM-SNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNN 159
N L SLP + L LK L NQL+ P I D + +L+ ++L N
Sbjct: 85 ENKLQ--SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 33.0 bits (76), Expect = 0.073
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 203 SDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPT 262
+ L S+P I + L L +NKL++LP + L++ L L L N++++LP
Sbjct: 15 NSKGLTSVPTGIPS--SATRLELESNKLQSLPHGV--FDKLTQ-LTKLSLSQNQIQSLPD 69
Query: 263 EII-TLKCLSELSLRDNPL 280
+ L L+ L L +N L
Sbjct: 70 GVFDKLTKLTILYLHENKL 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 1e-10
Identities = 65/404 (16%), Positives = 126/404 (31%), Gaps = 112/404 (27%)
Query: 32 SSLDSETLATQIELLPNNDYN---------KKPENIDTLL--LYHNNLSFFPDNASKFTN 80
+ + + + ++ D+ PE + +L L + + + +N
Sbjct: 164 TWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 81 LR-SLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFN------- 132
++ + + L + L+ ++ N K FN
Sbjct: 223 IKLRIHSIQAELRRL-LKSKPYENCLLVLL-----------NVQNAKAWNAFNLSCKILL 270
Query: 133 ----------LSGNQLEQFPI----------QILDIPTLKYLYLGNNSLNHVPREINKLC 172
LS + ++ + LKYL L PRE+
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDL---PREV---L 323
Query: 173 KLH--VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLK--MLKSLLLHNN 228
+ LS+ S+ D T+ D ++ + D + +S++ L+ + + +
Sbjct: 324 TTNPRRLSIIAESIRDGLATW-DNWKH---VNCDKLTTIIESSLNVLEPAEYRKMF---D 376
Query: 229 KLRTLPTEI-ITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSD 287
+L P I LS L+ + +++ ++ L LV + +
Sbjct: 377 RLSVFPPSAHIPTILLS------LIWFDVIKSDVMVVVN-------KLHKYSLVEKQPKE 423
Query: 288 MTYKPPSL-LELASRTLK---VHE--ID-------YSQEHL-PQNLVQYLES--AHHCVN 331
T PS+ LEL + +H +D + + L P L QY S HH N
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 332 PK-------CKGVFFD-----NRIEHIKFVDFCGKYRIPLLQYL 363
+ + VF D +I H + LQ L
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Score = 56.8 bits (136), Expect = 7e-09
Identities = 64/353 (18%), Positives = 120/353 (33%), Gaps = 87/353 (24%)
Query: 24 IKTLDFSYSSLDSETLATQ-----IELLPNNDYNKKPENIDTLLLYHNNLSFFPDNA--- 75
+ S + L T + L + H++++ PD
Sbjct: 259 WNAFNLS-----CKILLTTRFKQVTDFLSAATTTHISLD-------HHSMTLTPDEVKSL 306
Query: 76 -SKFTNLRSLDLSNNRITHLPQAITNFPLS-TLIA---RNNLLTAESLPKDMSNLKNLKV 130
K+ + R DL + +T P ++IA R+ L T ++ K ++ K +
Sbjct: 307 LLKYLDCRPQDLP-------REVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTI 358
Query: 131 FNLSGNQLEQ------------FPIQILDIP--TLKYLYLGNNSLNHVPREINKLCKLHV 176
S N LE FP IP L ++ + + + + KLH
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIW--FDVIKSDVMVV--VNKLHK 413
Query: 177 LSL----GGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
SL S IP LE + +N+ + +S++ H N +T
Sbjct: 414 YSLVEKQPKESTISIPS-----IYLELKVKLENEYA----------LHRSIVDHYNIPKT 458
Query: 233 LPTEIITLKCLSEKLKSLLLHNNKLRTL-PTEIITLKCLSELSLRDNPLV--IRFVSDMT 289
++ + L + S + H+ L+ + E +TL + L L IR S
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTL--FRMVFLDFRFLEQKIRHDSTAW 514
Query: 290 YKPPSLLELASRTLKVHEIDYSQEHLPQN------LVQYLES-AHHCVNPKCK 335
S+L + LK ++ Y ++ P+ ++ +L + + K
Sbjct: 515 NASGSILNTLQQ-LKFYK-PYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 56.3 bits (136), Expect = 9e-10
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
VL ++ I + LE L L + L S+ +++ L LK L L N++
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD 88
Query: 236 EIITLKCLSEKLKSLLLHNNKLRTLPT--EIITLKCLSELSLRDNPLV 281
+ L L L NKL+ + T + L+CL L L + +
Sbjct: 89 MLAEKL---PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Score = 55.9 bits (135), Expect = 1e-09
Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 30/143 (20%)
Query: 52 NKKPENIDTLLL--YHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIAR 109
N+ P + L+L +N ++F NL L L N + ++N P
Sbjct: 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLP------- 68
Query: 110 NNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVP--R 166
L LK LS N++ + + +P L +L L N L +
Sbjct: 69 --------------KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114
Query: 167 EINKLCKLHVLSLGGNSLTDIPD 189
+ KL L L L +T++ D
Sbjct: 115 PLKKLECLKSLDLFNCEVTNLND 137
Score = 49.7 bits (119), Expect = 1e-07
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 111 NLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINK 170
+ E + + ++ L V + + + + L++L L N L V + K
Sbjct: 12 RRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPK 69
Query: 171 LCKLHVLSLGGNSLTDIPDTFGD-LYQLEALILSDNQLESLP--ASISNLKMLKSLLLHN 227
L KL L L N + D + L L L LS N+L+ + + L+ LKSL L N
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 228 NKLRTLP 234
++ L
Sbjct: 130 CEVTNLN 136
Score = 48.6 bits (116), Expect = 4e-07
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 6/127 (4%)
Query: 89 NRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD- 147
RI + T + L+ N + + NL+ +L L + L
Sbjct: 12 RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPK 69
Query: 148 IPTLKYLYLGNNSLNHVPREINKLC-KLHVLSLGGNSLTDIPD--TFGDLYQLEALILSD 204
+P LK L L N + + + L L+L GN L DI L L++L L +
Sbjct: 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129
Query: 205 NQLESLP 211
++ +L
Sbjct: 130 CEVTNLN 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 53.1 bits (128), Expect = 9e-09
Identities = 31/143 (21%), Positives = 49/143 (34%), Gaps = 30/143 (20%)
Query: 52 NKKPENIDTLLLY--HNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIAR 109
N+ P ++ L+L +N +F L L N +T I N P
Sbjct: 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLP------- 61
Query: 110 NNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLNHVP--R 166
L LK LS N++ + + P L +L L N + +
Sbjct: 62 --------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107
Query: 167 EINKLCKLHVLSLGGNSLTDIPD 189
+ KL L L L +T++ D
Sbjct: 108 PLKKLENLKSLDLFNCEVTNLND 130
Score = 52.4 bits (126), Expect = 1e-08
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
VL ++ + + +LE L + L S+ A++ L LK L L +N++
Sbjct: 23 VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGL- 80
Query: 236 EIITLKCLSEKLKSLLLHNNKLRTLPT--EIITLKCLSELSLRDNPL 280
E++ KC L L L NK++ L T + L+ L L L + +
Sbjct: 81 EVLAEKC--PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125
Score = 47.4 bits (113), Expect = 7e-07
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 89 NRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD- 147
RI + T + L+ N+ L + L+ + L I L
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--IANLPK 62
Query: 148 IPTLKYLYLGNNSLNHVPREINKLC-KLHVLSLGGNSLTDIPD--TFGDLYQLEALILSD 204
+ LK L L +N ++ + + C L L+L GN + D+ L L++L L +
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122
Query: 205 NQLESLP 211
++ +L
Sbjct: 123 CEVTNLN 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 2e-08
Identities = 56/330 (16%), Positives = 96/330 (29%), Gaps = 116/330 (35%)
Query: 81 LRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL-E 139
R L LS+ + H + T + A QL E
Sbjct: 6 TRPLTLSHGSLEH------VLLVPT----ASFFIAS--------------------QLQE 35
Query: 140 QFPIQILDIPTLKY-----------L---YLGNNSLNHVPREINKLCK---LHVLSLGGN 182
QF +IL PT + L +LG +V + VL+L
Sbjct: 36 QF-NKILPEPTEGFAADDEPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLC-- 87
Query: 183 SLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT-LPTEIITLK 241
L + E L N + +L A + + +L+ ++ + I+ +
Sbjct: 88 -----------LTEFENCYLEGNDIHALAAKLLQ-ENDTTLVKTKELIKNYITARIMAKR 135
Query: 242 CLSEKLKSLLLHNNKLRTLPTEIITL--------KCLSELSLRD-----NPLVIRFVSDM 288
+K S L + +++ + E LRD + LV +
Sbjct: 136 PFDKKSNSALF--RAVGEGNAQLVAIFGGQGNTDDYFEE--LRDLYQTYHVLVGDLIKFS 191
Query: 289 TYKPPSLLELASRTLKVHEIDYSQ-----------EHLPQNLVQYLES------------ 325
+L EL TL ++ ++Q + P YL S
Sbjct: 192 A---ETLSELIRTTLDAEKV-FTQGLNILEWLENPSNTPD--KDYLLSIPISCPLIGVIQ 245
Query: 326 -AHHCVNPKCKGVFFDNRIEHIKFVDFCGK 354
AH+ V K G ++K +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 52.6 bits (127), Expect = 2e-08
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 158 NNSLNHVPREINKLCKLHVLSLGGNSLTDIPDT-FGDLYQLEALILSDNQLESLPASI-S 215
N L VP I L L N +T + F L L+ L + N+L ++P +
Sbjct: 21 NIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 216 NLKMLKSLLLHNNKLRTLPTEII-TLKCLSEKLKSLLLHNN 255
L L L L++N L+++P LK L + L+NN
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLK----SLTHIYLYNN 115
Score = 50.3 bits (121), Expect = 1e-07
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 181 GNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEI-- 237
L +P G + L L++NQ+ L + +L L+ L ++NKL +PT +
Sbjct: 21 NIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 238 -ITLKCLSEKLKSLLLHNNKLRTLPTEII-TLKCLSELSLRDNP 279
+T +L L L++N L+++P LK L+ + L +NP
Sbjct: 79 KLT------QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116
Score = 42.6 bits (101), Expect = 4e-05
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 25/106 (23%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
T+ + L L+NN+IT L P +L NL+ + N+L
Sbjct: 33 TDKQRLWLNNNQITKLE-----------------------PGVFDHLVNLQQLYFNSNKL 69
Query: 139 EQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGN 182
P + D T L L L +N L +PR + L L + L N
Sbjct: 70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 34.2 bits (79), Expect = 0.036
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 25/107 (23%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P + L L +N ++ NL+ L ++N++T +P + +
Sbjct: 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD------------- 78
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNN 159
L L +L+ N L+ P D + +L ++YL NN
Sbjct: 79 ----------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 54.7 bits (132), Expect = 2e-08
Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 39/206 (18%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
T L L L NN + PQA IAR L ++ K N L+ N+L
Sbjct: 122 TPLEHLYLHNNGLG--PQAG------AKIAR--ALQELAVNKKAKNAPPLRSIICGRNRL 171
Query: 139 EQFPIQIL-----DIPTLKYLYLGNNSLNH--VPREINKL----CKLHVLSLGGNSLTD- 186
E ++ L + + N + + + + +L VL L N+ T
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231
Query: 187 ----IPDTFGDLYQLEALILSDNQL---------ESLPASISNLKMLKSLLLHNNKLRTL 233
+ L L L+D L ++ + + N+ L++L L N++
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIG-LQTLRLQYNEIELD 289
Query: 234 PTEII--TLKCLSEKLKSLLLHNNKL 257
+ + L L L+ N+
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRF 315
Score = 50.5 bits (121), Expect = 4e-07
Identities = 42/230 (18%), Positives = 66/230 (28%), Gaps = 54/230 (23%)
Query: 76 SKFTNLRSLDLSNNRIT-----HLPQAITNFP-LSTLIARNNLLT---------AESLPK 120
+ +++ + LS N I L + I + L + L +
Sbjct: 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88
Query: 121 DMSNLKNLKVFNLSGNQLEQFPIQIL-----DIPTLKYLYLGNNSL-------------- 161
+ L LS N + L L++LYL NN L
Sbjct: 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 162 NHVPREINKLCKLHVLSLGGNSLTD-----IPDTFGDLYQLEALILSDNQLES------L 210
V ++ L + G N L + TF L + + N + L
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 211 PASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL 260
++ + LK L L +N T S L L LR L
Sbjct: 209 LEGLAYCQELKVLDLQDNT--------FTHLG-SSALAIALKSWPNLREL 249
Score = 41.6 bits (98), Expect = 3e-04
Identities = 35/223 (15%), Positives = 82/223 (36%), Gaps = 39/223 (17%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF---- 78
++++ + L++ ++ + ++ + T+ + N + P+
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSH------RLLHTVKMVQNGIR--PEGIEHLLLEG 211
Query: 79 ----TNLRSLDLSNNRIT-----HLPQAITNFP-LSTLIARNNLLT-------AESLPKD 121
L+ LDL +N T L A+ ++P L L + LL+ ++
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF-SK 270
Query: 122 MSNLKNLKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLNHVPREINKLCKLH 175
+ N+ L+ L N++E ++ L +P L +L L N + ++++ ++
Sbjct: 271 LENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV- 328
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLK 218
S G D D +L E + P ++ +
Sbjct: 329 -FSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEE 370
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 52.2 bits (126), Expect = 2e-08
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 158 NNSLNHVPREINKLCKLHVLSLGGNSLTDIPDT-FGDLYQLEALILSDNQLESLPASI-S 215
SL VP I VL L N +T + F L QL L L +NQL LPA +
Sbjct: 18 GKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
Query: 216 NLKMLKSLLLHNNKLRTLPTEII-TLKCLSEKLKSLLLHNN 255
L L L L++N+L+++P LK L + L NN
Sbjct: 76 KLTQLTQLSLNDNQLKSIPRGAFDNLK----SLTHIWLLNN 112
Score = 50.7 bits (122), Expect = 8e-08
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 181 GNSLTDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPTEI-- 237
G SL +P G + L L DNQ+ L + L L L L NN+L LP +
Sbjct: 18 GKSLASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
Query: 238 -ITLKCLSEKLKSLLLHNNKLRTLPTEII-TLKCLSELSLRDNP 279
+T +L L L++N+L+++P LK L+ + L +NP
Sbjct: 76 KLT------QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113
Score = 43.0 bits (102), Expect = 3e-05
Identities = 28/106 (26%), Positives = 37/106 (34%), Gaps = 25/106 (23%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
T + L L +N+IT L P L L +L NQL
Sbjct: 30 TTTQVLYLYDNQITKLE-----------------------PGVFDRLTQLTRLDLDNNQL 66
Query: 139 EQFPIQILDIPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGN 182
P + D T L L L +N L +PR + L L + L N
Sbjct: 67 TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 37.6 bits (88), Expect = 0.002
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 203 SDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEI---ITLKCLSEKLKSLLLHNNKLRT 259
S L S+P I + L L++N++ L + +T +L L L NN+L
Sbjct: 17 SGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLT------QLTRLDLDNNQLTV 68
Query: 260 LPTEII-TLKCLSELSLRDNPL 280
LP + L L++LSL DN L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQL 90
Score = 34.9 bits (81), Expect = 0.016
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P L LY N ++ + T L LDL NN++T LP + +
Sbjct: 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD------------- 75
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNN 159
L L +L+ NQL+ P D + +L +++L NN
Sbjct: 76 ----------KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 52.8 bits (127), Expect = 7e-08
Identities = 55/297 (18%), Positives = 106/297 (35%), Gaps = 62/297 (20%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS------FFPDNAS 76
++ +L+ S + L ++ ++ L P I L L N+ S F ++
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAI-----PFTITVLDLGWNDFSSKSSSEFKQAFSN 135
Query: 77 KFTNLRSLDLSNNRIT-----HLPQAITNFP--LSTLIARNNLLT-------AESLPKDM 122
++ SL+L N + L Q + P +++L R N L A+ L
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195
Query: 123 SNLKNLKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLNHVPRE-----INKL 171
+++ +L +LS N L L + L L N L+ E + L
Sbjct: 196 ASVTSL---DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
L + L + + ++ S Q ++L A+ N++ + + + ++
Sbjct: 253 KHLQTVYLDYDIVKNM---------------SKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Query: 232 TLPTEIIT--LKCLSEKLKSLLLHNN------KLRTLPTEIITLKCLSELSLRDNPL 280
+ I+ ++ LS K L N K +T ++ L E PL
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
Score = 46.2 bits (110), Expect = 8e-06
Identities = 58/247 (23%), Positives = 84/247 (34%), Gaps = 48/247 (19%)
Query: 79 TNLRSLDLSNNRIT-----HLPQAITNFP--LSTLIARNNLLT-------AESLPKDMSN 124
+ SLDLS N + L QA N P +++L N L + L +N
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 125 LKNLKVFNLSGNQLEQFPIQIL-----DIP-TLKYLYLGNNSLNHVPREI------NKLC 172
+ +L NLSGN L L IP T+ L LG N + N
Sbjct: 82 VTSL---NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 173 KLHVLSLGGNSLTD-----IPDTFGDL-YQLEALILSDNQLESLPAS------ISNLKML 220
+ L+L GN L + + + +L L N L S + S +
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198
Query: 221 KSLLLHNNKLRTLPTEII--TLKCLSEKLKSLLLHNNKL-----RTLPTEIITLKCLSEL 273
SL L N L + + + SL L N L L +LK L +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
Query: 274 SLRDNPL 280
L + +
Sbjct: 259 YLDYDIV 265
Score = 39.3 bits (92), Expect = 0.002
Identities = 39/209 (18%), Positives = 66/209 (31%), Gaps = 39/209 (18%)
Query: 109 RNNLLT---AESLPKDMSNLKNLKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNN 159
L + + + S + +LS N L L ++ L L N
Sbjct: 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61
Query: 160 SLNH--------VPREINKLCKLHVLSLGGNSLTD-----IPDTFGDL-YQLEALILSDN 205
SL + I + L+L GN L+ + T + + + L L N
Sbjct: 62 SLGFKNSDELVQILAAIP--ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119
Query: 206 QLESLPASI------SNLKMLKSLLLHNNKLRTLPTEIIT--LKCLSEKLKSLLLHNNKL 257
S +S + + SL L N L ++ + L + + SL L N L
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179
Query: 258 RTLPTEIITL------KCLSELSLRDNPL 280
+ + ++ L L N L
Sbjct: 180 ASKNCAELAKFLASIPASVTSLDLSANLL 208
Score = 33.1 bits (76), Expect = 0.13
Identities = 15/138 (10%), Positives = 39/138 (28%), Gaps = 25/138 (18%)
Query: 23 SIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKF---- 78
+ +L+ + L +L L + +++ T+ L ++ + K
Sbjct: 226 HVVSLNLCLNCLHGPSLENLKLLKDSL------KHLQTVYLDYDIVKNMSKEQCKALGAA 279
Query: 79 ----TNLRSLDLSNNRIT-----HLPQAI--TNFPLSTLIARNNLLTAES----LPKDMS 123
+ +D + I + I + N L +D++
Sbjct: 280 FPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339
Query: 124 NLKNLKVFNLSGNQLEQF 141
L+ + L +
Sbjct: 340 IPDELRESIQTCKPLLEH 357
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 48.6 bits (116), Expect = 2e-06
Identities = 42/268 (15%), Positives = 87/268 (32%), Gaps = 49/268 (18%)
Query: 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDN------ 74
++ ++ + LD L LLP +K L L N+L
Sbjct: 100 RHALDEVNLASCQLDPAGLR---TLLPVFLRARK------LGLQLNSLG---PEACKDLR 147
Query: 75 ---ASKFTNLRSLDLSNNRIT-----HLPQAI-TNFPLSTLIARNNLLT---AESLPKDM 122
+ +L LSNN +T L + + N ++ L + L E L +
Sbjct: 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207
Query: 123 SNLKNLKVFNLSGNQLEQFPIQIL-----DIPTLKYLYLGNNSLNH--------VPREIN 169
+ L+ N++ N L + P+L+ L+L N L+ +
Sbjct: 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAE 267
Query: 170 KLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNK 229
++ V G ++++ + + + + +L++L L +
Sbjct: 268 GGARVVVSLTEGTAVSE------YWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRG 321
Query: 230 LRTLPTEIITLKCLSEKLKSLLLHNNKL 257
P L + ++++LL
Sbjct: 322 ATLNPWRKAQLLRVEGEVRALLEQLGSS 349
Score = 45.5 bits (108), Expect = 2e-05
Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 28/178 (15%)
Query: 79 TNLRSLDLSNNRIT-----HLPQAIT--NFPLSTLIARNNLLTAESLPKDMSNLKNLKVF 131
++LR L+L+ R+T + + L + + L L + +
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 132 NLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLN-----HVPREINKLCKLHVLSLG 180
L N L + L D + L L NN L + + + LSL
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 181 GNSLTD-----IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
L D + QL+ L ++ N A L + L L
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-----LALARAAREHPSLELL 244
Score = 33.5 bits (77), Expect = 0.097
Identities = 38/227 (16%), Positives = 71/227 (31%), Gaps = 43/227 (18%)
Query: 61 LLLYHNN--LSFFPDNASKFTNLRSLDLSNNRITHLP-QAITNFPLSTLIARNNLLTAES 117
LL HN L+ L + ++ L Q + L + + +
Sbjct: 6 LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQR 65
Query: 118 LPKDMSNLKNLKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLNHVPRE--IN 169
++ L +L+ NL+G ++ ++ L + L + L+ +
Sbjct: 66 FSAEV--LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123
Query: 170 KLCKLHVLSLGGNSLTD-----------IPDTFGDLYQLEALILSDNQL-----ESLPAS 213
+ L L NSL Q+ L LS+N L L
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQC-----QITTLRLSNNPLTAAGVAVLMEG 178
Query: 214 ISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL 260
++ + L L + L L+ L+ +L N +L+ L
Sbjct: 179 LAGNTSVTHLSLLHTGLGD-----EGLELLAAQLD----RNRQLQEL 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 46.5 bits (110), Expect = 5e-06
Identities = 41/180 (22%), Positives = 63/180 (35%), Gaps = 12/180 (6%)
Query: 127 NLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD 186
N K+ + ++ P L + + ++K +L L
Sbjct: 81 NYKILDRENRRISIIINSS-APPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRS 139
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEK 246
PD L +L N+ L SL L NN+L L ++ ++ +
Sbjct: 140 DPD-LVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRL-DDMSSIVQKAPN 197
Query: 247 LKSLLLHNNKLRTLPTEIITLKC--LSELSLRDNPLVIRFVSDMTYKP------PSLLEL 298
LK L L N+L++ E+ +K L EL L N L F TY P LL L
Sbjct: 198 LKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256
Score = 36.1 bits (83), Expect = 0.014
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 54 KPENIDTLLLYHNNLS---FFPDNASKFTNLRSLDLSNNRITHLP--QAITNFPLSTLIA 108
+ +L L +N L K NL+ L+LS N + I L L
Sbjct: 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 227
Query: 109 RNNLLT 114
N L
Sbjct: 228 DGNSLC 233
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 41.1 bits (95), Expect = 4e-04
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 34/170 (20%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP----KDMSNLKNLKVF 131
L +L + + L +L + L + D+ NL+ L ++
Sbjct: 169 DAMPLLNNLKIKGTNNLSIG-KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227
Query: 132 NLSGNQLEQFPIQILD-------IPTLKYLYLGNNSLNHVPREI----NKLCKLHVLSLG 180
+ + + P LK+L + + +V E+ + L +L + +
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287
Query: 181 GNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
LTD L + +K LK + + N L
Sbjct: 288 AGVLTD------------------EGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 37.6 bits (86), Expect = 0.005
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 23/121 (19%)
Query: 75 ASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134
S NL L L + + L + + P LK +
Sbjct: 215 GSDLPNLEKLVLYVGVEDYGFDG-------DMNVFRPLFSKDRFPN-------LKWLGIV 260
Query: 135 GNQLEQFPIQIL----DIPTLKYLYLGNNSL-----NHVPREINKLCKLHVLSLGGNSLT 185
+ + +++ +P L+ + + L + ++K+ L +++ N L+
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320
Query: 186 D 186
D
Sbjct: 321 D 321
Score = 35.7 bits (81), Expect = 0.023
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 193 DLYQLEALILSDNQLESLPASISN--LKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSL 250
LY D + S LK L + + + + + E+ + +L+++
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284
Query: 251 LLHNNKL-----RTLPTEIITLKCLSELSLRDNPL 280
+ L R L + +K L ++++ N L
Sbjct: 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 32.6 bits (73), Expect = 0.20
Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 57 NIDTLLLYHNNLS-----FFPDNASKFTNLRSLDLSNNRITH 93
++T+ + L+ D+ K +L+ +++ N ++
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
Score = 32.2 bits (72), Expect = 0.29
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 19/65 (29%)
Query: 74 NASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNL 133
+ L ++D+S +T A L + +K+LK N+
Sbjct: 274 ESDILPQLETMDISAGVLTDEG-------------------ARLLLDHVDKIKHLKFINM 314
Query: 134 SGNQL 138
N L
Sbjct: 315 KYNYL 319
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 38.8 bits (90), Expect = 0.003
Identities = 35/316 (11%), Positives = 85/316 (26%), Gaps = 36/316 (11%)
Query: 32 SSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRI 91
+L I + P + L L + + P +R LDL +
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305
Query: 92 T--HLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIP 149
I P ++ N++ L K LK +
Sbjct: 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD-------EQGM 358
Query: 150 TLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD-----IPDTFGDLYQLEALILSD 204
+ + L + + +L +++ + +T+ I +L ++L
Sbjct: 359 EDEEGLVSQRGLIALAQ---GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415
Query: 205 NQL-------ESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKL 257
+ + + + K L+ + + + + S ++ +LL
Sbjct: 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475
Query: 258 RTLPTEIITLKC--LSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEHL 315
+ C L +L +R S+ ++ ++ + +
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGCC-----FSER-----AIAAAVTKLPSLRYLWVQGYRA 525
Query: 316 PQNLVQYLESAHHCVN 331
++ A N
Sbjct: 526 SMTGQDLMQMARPYWN 541
Score = 38.0 bits (88), Expect = 0.004
Identities = 35/234 (14%), Positives = 68/234 (29%), Gaps = 24/234 (10%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP 119
+ + + + +F NLRSL L F L +
Sbjct: 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPR------AAMFNLIPENWGG--YVTPWVT 105
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQIL---DIPTLKYLYL------GNNSLNHVPREINK 170
+ +NL+ LK + + + L L+ L L + L + K
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165
Query: 171 LCKLH-----VLSLGGNSLTDIPDTFGDLYQLEALILSDNQL--ESLPASISNLKMLKSL 223
+ L G L ++ L L + ++ + L N + L S+
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225
Query: 224 LLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRD 277
+ + ++ L L E L + + ++ + L L L
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279
Score = 33.0 bits (75), Expect = 0.20
Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 22/212 (10%)
Query: 67 NLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLK 126
L F A+ L+ + FP + + +P
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293
Query: 127 NLKVFNLSGNQL--EQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK-LHVLSLGGNS 183
++ +L L E I P L+ L N + + + CK L L + +
Sbjct: 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA 353
Query: 184 LTDIPDTFGDLY-------------QLEALILSDNQL--ESLPASISNLKMLKSLLLHNN 228
+ L +LE + + + + ESL + + LK L
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF----R 409
Query: 229 KLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL 260
+ E IT L ++SLL+ KLR
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441
Score = 29.9 bits (67), Expect = 1.7
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 16/129 (12%)
Query: 75 ASKFTNLRSLDLSNNRIT-----HLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLK 129
N+R + L + + N L L R + ++ ++ L +L+
Sbjct: 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPN--LQKLEMRGCCFSERAIAAAVTKLPSLR 516
Query: 130 VFNLSGNQLEQFPIQILDI----PTLKYLYLG---NNSLNHVPREINKLCKLHV-LSLGG 181
+ G + ++ + ++ + + RE+ + SL G
Sbjct: 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAG 576
Query: 182 NSLTDIPDT 190
TD P T
Sbjct: 577 -QRTDCPTT 584
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 38.3 bits (89), Expect = 0.004
Identities = 40/224 (17%), Positives = 82/224 (36%), Gaps = 31/224 (13%)
Query: 75 ASKFTNLRSLDLSNNRITHL-PQAITNFPLS-------TLIARNNLLTAESLPKDMSNLK 126
A+ NL+ LDL + + + +++FP + + + ++ +L + ++
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211
Query: 127 NLKVFNLSGN-QLEQFPIQILDIPTLKYLYLG-------NNSLNHVPREINKLCKLHVLS 178
NLK L+ LE+ + P L+ L G + + + ++ +L LS
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271
Query: 179 LGGNSLTD--IPDTFGDLYQLEALILSDNQL--ESLPASISNLKMLKSLLLHNNKLRTLP 234
G +P + +L L LS + L + L+ L + +
Sbjct: 272 -GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY------ 324
Query: 235 TEIITLKCLSEKLKSL----LLHNNKLRTLPTEIITLKCLSELS 274
E L+ L+ K L + + P +T + L +S
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368
Score = 34.9 bits (80), Expect = 0.052
Identities = 37/256 (14%), Positives = 78/256 (30%), Gaps = 36/256 (14%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNR----------------ITHLPQAITNFP- 102
+ + + +F +RS++L + +++
Sbjct: 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106
Query: 103 LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ----------LEQFP-IQILDIPTL 151
L + + ++T + L + KN KV LS + ++ LD+
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166
Query: 152 KYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTD--IPDTFGDLYQLEALILSDN-QLE 208
+ + L+H P L L +S + ++ + L++L L+ LE
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSL-NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225
Query: 209 SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITL- 267
L + L+ L P L K L + +P + +
Sbjct: 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY 285
Query: 268 ---KCLSELSLRDNPL 280
L+ L+L +
Sbjct: 286 SVCSRLTTLNLSYATV 301
Score = 29.9 bits (67), Expect = 1.7
Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 9/142 (6%)
Query: 75 ASKFTNLRSLDLSNNRIT-----HLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLK 129
+ + L ++ + H+ + L L R+ ++L + S L+ ++
Sbjct: 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS--LRKLEIRDCPFGDKALLANASKLETMR 509
Query: 130 VFNLSGNQLEQFPIQIL--DIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDI 187
+S + ++L +P L + E + ++ + D+
Sbjct: 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDM 569
Query: 188 PDTFGDLYQLEALILSDNQLES 209
P ++ Q + S + +
Sbjct: 570 PGFVWNMDQDSTMRFSRQIITT 591
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 36.3 bits (84), Expect = 0.004
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 109 RNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD-IPTLKYLYLGNNSLN 162
LT SLP + L+GN L P +LD +P L+ +LG N
Sbjct: 16 GRRGLTWASLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 32.5 bits (74), Expect = 0.079
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 178 SLGGNSL-TDIPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLR 231
L SL T P L+L+ N L +LP + L L++ L N R
Sbjct: 19 GLTWASLPTAFPVD------TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 31.3 bits (71), Expect = 0.18
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNN------RITHLPQAITNFPLS 104
P + L+L NNL+ P LR+ L N R+ L + P
Sbjct: 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPER 86
Score = 30.9 bits (70), Expect = 0.28
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 23/61 (37%)
Query: 78 FTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
+ L L+ N +T LP P + L L+ +L N
Sbjct: 30 PVDTTELVLTGNNLTALP-----------------------PGLLDALPALRTAHLGANP 66
Query: 138 L 138
Sbjct: 67 W 67
Score = 30.2 bits (68), Expect = 0.46
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 148 IPT-LKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGN 182
P L L N+L +P + + L L LG N
Sbjct: 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.4 bits (66), Expect = 0.88
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 174 LHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQL 207
L L GN+LT +P L L L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 35.6 bits (82), Expect = 0.019
Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 21/214 (9%)
Query: 75 ASKFTNLRSLDLSNNRIT-HLPQAITNFP-LSTL-IARNNLLTAESLPKDMSNLKNLKVF 131
S+ + L++L L R++ + + L L ++ + + +L +S+ L
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173
Query: 132 NLSG-NQLEQFPIQIL---DIPTLKYLYLGNNSLN----HVPREINKLCKLHVLSLGG-N 182
NLS + +Q+ T+ L L N + + + L L L
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233
Query: 183 SLTDIP-DTFGDLYQLEALILSDNQL--ESLPASISNLKMLKSLLLHNNKLRTLPTEIIT 239
L + F L L+ L LS + + LK+L + T
Sbjct: 234 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI------VPDGT 287
Query: 240 LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSEL 273
L+ L E L L ++ + T+ I K E+
Sbjct: 288 LQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 321
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth
factor complex; NMR {Marsupenaeus japonicus} SCOP:
a.163.1.1
Length = 78
Score = 31.1 bits (70), Expect = 0.11
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 330 VNPKCKGVFFDNRIEHIKFVDFCGK----YRIPLLQYLCSSRCITNS 372
++ C+GV + I + K V C +R+P L +C +RC N
Sbjct: 4 IDNTCRGVMGNRDI-YKKVVRVCEDCTNIFRLPGLDGMCRNRCFYNE 49
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo
sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Length = 99
Score = 28.7 bits (64), Expect = 0.94
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 38 TLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRI 91
+ + + L N E LL Y +N+ P++ K+ RS+ + N
Sbjct: 2 SASPAVAELCQNTPETFLEASKLLLTYADNILRNPNDE-KY---RSIRIGNTAF 51
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP:
d.314.1.1
Length = 124
Score = 28.9 bits (64), Expect = 1.2
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 33 SLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRI 91
S + + + L N E LL Y +N+ P + K+ RS+ + N
Sbjct: 12 GSSSSSASPAVAELCQNTPETFLEASKLLLTYADNILRNPSDE-KY---RSIRIGNTAF 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,492,364
Number of extensions: 314298
Number of successful extensions: 5603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 378
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)