RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3966
(392 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 68.5 bits (166), Expect = 3e-13
Identities = 41/196 (20%), Positives = 82/196 (41%), Gaps = 13/196 (6%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLP 119
+L+ +N +S TNL L L+ N++ + + L+ L NN ++ +
Sbjct: 201 SLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA-- 257
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSL 179
+S L L L NQ+ N I+ L L L+L
Sbjct: 258 -PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ--LEDISPISNLKNLTYLTL 314
Query: 180 GGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIIT 239
N+++DI L +L+ L ++N++ + S++NL + L +N++ +++
Sbjct: 315 YFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQI----SDLTP 368
Query: 240 LKCLSEKLKSLLLHNN 255
L L+ ++ L L++
Sbjct: 369 LANLT-RITQLGLNDQ 383
Score = 68.1 bits (165), Expect = 3e-13
Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 13/215 (6%)
Query: 64 YHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMS 123
+N +K TNL SL +NN+I+ + L L N L ++
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLA 238
Query: 124 NLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNS 183
+L NL +L+ NQ+ + + L L LG N ++++ +
Sbjct: 239 SLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNISPLAG--LTALTNLELNEN 295
Query: 184 LTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCL 243
+ +L L L L N + + +S+L L+ L NNK+ + + L L
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS----LANL 350
Query: 244 SEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDN 278
+ + L +N++ L + L +++L L D
Sbjct: 351 T-NINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383
Score = 49.2 bits (116), Expect = 3e-07
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 13/193 (6%)
Query: 88 NNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILD 147
+N+++ + L +LIA NN ++ + ++NL L +L+GNQL+ +
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL---SLNGNQLKDIG-TLAS 239
Query: 148 IPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQL 207
+ L L L NN ++++ ++ L KL L LG N +++I G + +
Sbjct: 240 LTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298
Query: 208 ESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITL 267
+ + ISNLK L L L+ N + ++I + L+ KL+ L NNK+ + + L
Sbjct: 299 D--ISPISNLKNLTYLTLYFNNI----SDISPVSSLT-KLQRLFFANNKVSDVS-SLANL 350
Query: 268 KCLSELSLRDNPL 280
++ LS N +
Sbjct: 351 TNINWLSAGHNQI 363
Score = 37.3 bits (85), Expect = 0.002
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 171 LCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
L + LG ++TD + DL Q+ L ++S+ + L L + NN+L
Sbjct: 21 LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQL 78
Query: 231 RTLP 234
+
Sbjct: 79 TDIT 82
Score = 35.0 bits (79), Expect = 0.015
Identities = 45/244 (18%), Positives = 85/244 (34%), Gaps = 46/244 (18%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
+ + TL + D NL ++ SNN++T + L ++ NN +
Sbjct: 44 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 102
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQ------------------------------- 144
+ +++NL L +FN ++
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162
Query: 145 -------ILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQL 197
L T +++ + KL L L N ++DI L
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-TNL 221
Query: 198 EALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKL 257
+ L L+ NQL+ + ++++L L L L NN++ + + L L+ KL L L N++
Sbjct: 222 DELSLNGNQLKDIG-TLASLTNLTDLDLANNQI----SNLAPLSGLT-KLTELKLGANQI 275
Query: 258 RTLP 261
+
Sbjct: 276 SNIS 279
Score = 33.4 bits (75), Expect = 0.041
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNN 111
+ L +N +S + + TN+ L +N+I+ L + N ++ L +
Sbjct: 330 KLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 383
Score = 27.3 bits (59), Expect = 3.3
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNL 128
F D A L +T ++TL A + S+ + L NL
Sbjct: 14 QIFTDTA--LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIK--SI-DGVEYLNNL 68
Query: 129 KVFNLSGNQLEQFP 142
N S NQL
Sbjct: 69 TQINFSNNQLTDIT 82
Score = 26.9 bits (58), Expect = 4.5
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVL 177
++L + ++ + + L + NN L + + L KL +
Sbjct: 41 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDI 93
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 67.4 bits (163), Expect = 3e-13
Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 8/224 (3%)
Query: 57 NIDTLLLYHNNLSFFPDN-ASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
++ L L N L P+ LR + ++ N + + N L ++
Sbjct: 80 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN-HVPREINKLCKL 174
+K L ++ + P + P+L L+L N + + L L
Sbjct: 140 GIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 197
Query: 175 HVLSLGGNSLTDIPDTFGDLY-QLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
L L NS++ + + L L L++N+L +P +++ K ++ + LHNN + +
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257
Query: 234 PTEIIT---LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELS 274
+ + L +N ++ + T +C+ +
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
Score = 63.5 bits (153), Expect = 7e-12
Identities = 45/250 (18%), Positives = 91/250 (36%), Gaps = 32/250 (12%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQ-AITNFPLSTLIARNNLLTA 115
++ + L P + + LDL NN+IT + N + N +
Sbjct: 11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI----NKL 171
+ P + L L+ LS NQL++ P ++ L + N + V + + N++
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQM 126
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
+ + + S F + +L + ++D + ++P + L L L NK+
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKIT 184
Query: 232 TLPTEII---------------------TLKCLSEKLKSLLLHNNKLRTLPTEIITLKCL 270
+ + + L+ L L+NNKL +P + K +
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244
Query: 271 SELSLRDNPL 280
+ L +N +
Sbjct: 245 QVVYLHNNNI 254
Score = 40.4 bits (93), Expect = 2e-04
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 6/155 (3%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNNKL 230
C L V+ L +P L L +N++ + NLK L +L+L NNK+
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 231 RTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTY 290
+ KL+ L L N+L+ LP ++ + + V + V +
Sbjct: 68 SKISPGAF---APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 124
Query: 291 KPPSLLELASRTLKVHEIDYSQEHLPQNLVQYLES 325
+ + + + + + + + +
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 59.5 bits (142), Expect = 2e-10
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 158 NNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNL 217
N S N + + L L++ N L ++P +LE LI S N L +P NL
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNL 326
Query: 218 KMLKSLLLHNNKLRTLPTEIITLKCL 243
K L + N LR P +++ L
Sbjct: 327 KQLH---VEYNPLREFPDIPESVEDL 349
Score = 54.1 bits (128), Expect = 9e-09
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 140 QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEA 199
+ P+L+ L + NN L +P +L L N L ++P+ L+
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ---NLKQ 328
Query: 200 LILSDNQLESLPASISNLKMLK 221
L + N L P +++ L+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLR 350
Score = 53.7 bits (127), Expect = 1e-08
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 182 NSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLK 241
S +I LE L +S+N+L LPA L+ L+ N L +P
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPELP---- 323
Query: 242 CLSEKLKSLLLHNNKLRTLPTEIITLKCL 270
+ LK L + N LR P +++ L
Sbjct: 324 ---QNLKQLHVEYNPLREFPDIPESVEDL 349
Score = 53.3 bits (126), Expect = 2e-08
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 78 FTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQ 137
+L L++SNN++ LP L LIA N L +P+ NLK L ++ N
Sbjct: 283 PPSLEELNVSNNKLIELPALPPR--LERLIASFNHLA--EVPELPQNLKQL---HVEYNP 335
Query: 138 LEQFPIQILDIPTLKYLYLGN 158
L +FP +++ L + +
Sbjct: 336 LREFPDI---PESVEDLRMNS 353
Score = 51.4 bits (121), Expect = 7e-08
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLT 114
P +++ L + +N L P L L S N + +P+ N L L N L
Sbjct: 283 PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELPQN--LKQLHVEYNPLR 337
Query: 115 AESLPKDMSNLKNLKVFN 132
P ++++L++ +
Sbjct: 338 --EFPDIPESVEDLRMNS 353
Score = 51.4 bits (121), Expect = 7e-08
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNS 183
+L+ N+S N+L + P P L+ L N L VP L +LH + N
Sbjct: 282 LPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVPELPQNLKQLH---VEYNP 335
Query: 184 LTDIPDTFGDLYQL 197
L + PD + L
Sbjct: 336 LREFPDIPESVEDL 349
Score = 43.7 bits (101), Expect = 2e-05
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 173 KLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRT 232
+ H L L L+ +P+ LE+L+ S N L LP +LK L + L
Sbjct: 39 QAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95
Query: 233 LPTEIITLKC 242
LP + L
Sbjct: 96 LPPLLEYLGV 105
Score = 42.1 bits (97), Expect = 6e-05
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 216 NLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSL 275
L+ L + NNKL LP +L+ L+ N L +P + L +L +
Sbjct: 282 LPPSLEELNVSNNKLIELPALP-------PRLERLIASFNHLAEVPEL---PQNLKQLHV 331
Query: 276 RDNPL 280
NPL
Sbjct: 332 EYNPL 336
Score = 39.0 bits (89), Expect = 7e-04
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITN 100
L L + LS P+ +L SL S N +T LP+ +
Sbjct: 37 DRQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQS 79
Score = 38.3 bits (87), Expect = 0.001
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 126 KNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLT 185
+ L+ L P P L+ L NSL +P L L V + +L+
Sbjct: 38 RQAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 186 DI 187
D+
Sbjct: 95 DL 96
Score = 36.3 bits (82), Expect = 0.006
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 30/94 (31%)
Query: 79 TNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQL 138
L+L+N ++ LP+ + L+ S N L
Sbjct: 38 RQAHELELNNLGLSSLPELPPH---------------------------LESLVASCNSL 70
Query: 139 EQFPIQILDIPTLKYLYLGNNSLNHVPREINKLC 172
+ P +LK L + NN+L + L
Sbjct: 71 TELP---ELPQSLKSLLVDNNNLKALSDLPPLLE 101
Score = 35.6 bits (80), Expect = 0.008
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 151 LKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESL 210
L L N L+ +P L L NSLT++P+ L++L++ +N L++L
Sbjct: 40 AHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKAL 93
Query: 211 PASISNLKM 219
L+
Sbjct: 94 SDLPPLLEY 102
Score = 33.3 bits (74), Expect = 0.043
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 220 LKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNP 279
L L+N L +LP L+SL+ N L LP +LK L +
Sbjct: 40 AHELELNNLGLSSLPELP-------PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA 92
Query: 280 L 280
L
Sbjct: 93 L 93
Score = 29.8 bits (65), Expect = 0.55
Identities = 21/112 (18%), Positives = 31/112 (27%), Gaps = 12/112 (10%)
Query: 241 KCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELAS 300
CL + L L+N L +LP L L N L T P L S
Sbjct: 34 DCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSL--------TELPELPQSLKS 82
Query: 301 RTLKVHEIDYSQEHLPQNLVQYLESAHHCVNPKCKGVFFDNRIEHIKFVDFC 352
+ + + + LP L S + +I +
Sbjct: 83 LLVDNNNL-KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 133
Score = 26.3 bits (56), Expect = 6.5
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPL 103
P ++++L+ N+L+ P+ +L+SL + NN + L
Sbjct: 57 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLPPLLEY 102
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 57.4 bits (137), Expect = 5e-10
Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 2/179 (1%)
Query: 55 PENIDTLLLYHNNLSFFPDNA-SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLL 113
P++ L L N L F +T L L+L +T L T L TL +N L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK 173
+ L + + + + GN P + K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 174 LHVLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
L LSL N+LT++ L L+ L+L +N L ++P +L LH N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
Score = 52.8 bits (125), Expect = 2e-08
Identities = 38/207 (18%), Positives = 61/207 (29%), Gaps = 8/207 (3%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
SK + ++ +T LP + + L NLL + L NL
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDLPKD-TTILHLSENLLY-TFSLATLMPYTRLTQLNLDR 64
Query: 136 NQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLY 195
+L + + N + + + L
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 196 QLEALILSDNQLESLPASISNLKMLKSLLLH--NNKLRTLPTEIITLKCLSEKLKSLLLH 253
+L+ L L N+L++LP + L NN + L+ L +LLL
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN----LDTLLLQ 180
Query: 254 NNKLRTLPTEIITLKCLSELSLRDNPL 280
N L T+P L L NP
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Score = 35.1 bits (79), Expect = 0.010
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 167 EINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLL 225
E++K+ ++ +LT +P L LS+N L + A++ L L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 226 HNNK 229
+
Sbjct: 63 DRAE 66
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 52.0 bits (124), Expect = 5e-09
Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 129 KVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIP 188
+V +L+ L + + + +L L +N L +P + L L VL N+L ++
Sbjct: 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 189 DTFGDLYQLEALILSDNQLESLPA--SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEK 246
E L+L +N+L+ A + + L L L N L L +
Sbjct: 60 GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118
Query: 247 LKSLL 251
+ S+L
Sbjct: 119 VSSIL 123
Score = 44.3 bits (104), Expect = 2e-06
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
VL L LT + L + L LS N+L +LP +++ L+ L+ L +N L +
Sbjct: 2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 236 EIITLKCLSEKLKSLLLHNNKLRTLPT--EIITLKCLSELSLRDNPL 280
+ + LLL NN+L+ +++ L L+L+ N L
Sbjct: 61 VANLPRL-----QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
Score = 43.6 bits (102), Expect = 3e-06
Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 28/141 (19%)
Query: 82 RSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF 141
R L L++ +T L + L + +LS N+L
Sbjct: 1 RVLHLAHKDLTVLCH-------------------------LEQLLLVTHLDLSHNRLRAL 35
Query: 142 PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPD--TFGDLYQLEA 199
P + + L+ L +N+L +V + L +L L L N L +L
Sbjct: 36 PPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 94
Query: 200 LILSDNQLESLPASISNLKML 220
L L N L L +
Sbjct: 95 LNLQGNSLCQEEGIQERLAEM 115
Score = 43.2 bits (101), Expect = 5e-06
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAE 116
+ L L HN L P + L L S+N + ++ L L+ NN L
Sbjct: 21 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQS 80
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDI----PTLKYL 154
+ + + + L + NL GN L Q + P++ +
Sbjct: 81 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 54.0 bits (128), Expect = 9e-09
Identities = 56/227 (24%), Positives = 88/227 (38%), Gaps = 10/227 (4%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP-QAITNFPLSTLIARNNLLTAESL 118
T L P + + L NRI+H+P + T++ ++ + A
Sbjct: 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 119 PKDMSNLKNLKVFNLSGNQLEQ--FPIQILDIPTLKYLYLGNNSLNHVPREINK-LCKLH 175
+ L L+ +LS N + P + L L+L L + + + L L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 176 VLSLGGNSLTDI-PDTFGDLYQLEALILSDNQLESLP-ASISNLKMLKSLLLHNNKLRTL 233
L L N+L + DTF DL L L L N++ S+P + L L LLLH N++ +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 234 PTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ L + L NN + L+ L L L DNP
Sbjct: 193 HPH--AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 35.9 bits (81), Expect = 0.005
Identities = 30/175 (17%), Positives = 51/175 (29%), Gaps = 9/175 (5%)
Query: 62 LLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAI--TNFPLSTLIARNNLLTAESLP 119
L P L+ L L +N + LP L+ L N ++
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPE 170
Query: 120 KDMSNLKNLKVFNLSGNQLEQFPIQILDI--PTLKYLYLGNNSLNHVPREINKLCKLHVL 177
+ L +L L N++ + NN + L L L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Query: 178 SLGGNSLTDIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLKSLLLHNNKLR 231
L N L+ S +++ SLP ++ + + L N L+
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR---LAANDLQ 282
Score = 27.5 bits (59), Expect = 2.6
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 48 NNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRIT-HLPQAITNFPLSTL 106
+ + L L N + L+ S++ + LPQ + L L
Sbjct: 217 PTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL 276
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 43.2 bits (100), Expect = 3e-05
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 175 HVLSLGGNSLTD-IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKL 230
+ L L N + +P L L +L +S N L NL+ NNK
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 41.7 bits (96), Expect = 1e-04
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 109 RNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSL 161
RNN + +LP+ ++ LK L N+S N L Q ++ NN
Sbjct: 252 RNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 39.7 bits (91), Expect = 3e-04
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 1/122 (0%)
Query: 64 YHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMS 123
N L+ NL +DLS N + + +T + +
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 124 NLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGN 182
KNL +L N++ P + + L L + N+L + L + V + N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 183 SL 184
Sbjct: 302 KC 303
Score = 39.3 bits (90), Expect = 5e-04
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 153 YLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQL 207
N +P+ + +L LH L++ N+L G+L + + ++N+
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 38.2 bits (87), Expect = 0.001
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 202 LSDNQLE-SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTL 260
L +N++ +LP ++ LK L SL + N L + L+ S +N L
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV---SAYANNKCLCGS 307
Query: 261 P 261
P
Sbjct: 308 P 308
Score = 37.8 bits (86), Expect = 0.001
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 47 PNNDYNKKPENIDTLLLYHNNLS-FFPDNASKFTNLRSLDLSNNRITHLPQAITNFP-LS 104
+ +N++ L L +N + P ++ L SL++S N + N
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294
Query: 105 TL-IARNNLLTAESLPK 120
A N L LP
Sbjct: 295 VSAYANNKCLCGSPLPA 311
Score = 35.1 bits (79), Expect = 0.012
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 219 MLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDN 278
+ L +N TLP + LK L SL + N L + L+ + +N
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLK----FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
Query: 279 PL 280
Sbjct: 302 KC 303
Score = 25.9 bits (55), Expect = 8.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 189 DTFGDLYQLEALILSDNQLE---SLPASISNLKMLKSLLLHNN 228
DT Y++ L LS L +P+S++NL L L +
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 41.8 bits (97), Expect = 3e-05
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 156 LGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASIS 215
L + + N + L L G + I + L Q +A+ SDN++ L
Sbjct: 3 LTAELIEQAAQYTN-AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFP 60
Query: 216 NLKMLKSLLLHNN 228
L+ LK+LL++NN
Sbjct: 61 LLRRLKTLLVNNN 73
Score = 38.8 bits (89), Expect = 4e-04
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 2/130 (1%)
Query: 123 SNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGN 182
+N + +L G ++ + + +N + + +L
Sbjct: 15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 74
Query: 183 SLTDIPDTFGDLYQLEALILSDNQLESLP--ASISNLKMLKSLLLHNNKLRTLPTEIITL 240
L L LIL++N L L +++LK L L + N + + +
Sbjct: 75 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134
Query: 241 KCLSEKLKSL 250
+++ L
Sbjct: 135 IYKVPQVRVL 144
Score = 34.5 bits (78), Expect = 0.008
Identities = 6/45 (13%), Positives = 18/45 (40%)
Query: 190 TFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
+ + + L L ++ + + L ++ +N++R L
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57
Score = 34.1 bits (77), Expect = 0.011
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP 95
L L + + + ++D S+N I L
Sbjct: 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57
Score = 30.7 bits (68), Expect = 0.16
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 246 KLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
+ + L L K+ + TL + DN +
Sbjct: 19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI 53
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 43.0 bits (99), Expect = 4e-05
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 174 LHVLSLGGNSLTD--IPDTFGDLYQLEALILSDNQL-----ESLPASISNLKMLKSLLLH 226
+ L + L+D + L Q + + L D L + + +++ L L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 227 NNKLRTLPTEIIT--LKCLSEKLKSLLLHNN 255
+N+L + + L+ S K++ L L N
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 38.0 bits (86), Expect = 0.002
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 33/114 (28%)
Query: 80 NLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLE 139
+++SLD+ ++ + + L+ +V L L
Sbjct: 3 DIQSLDIQCEELSD----------------------ARWAELLPLLQQCQVVRLDDCGLT 40
Query: 140 QFPIQIL-----DIPTLKYLYLGNNSLNHVPREI------NKLCKLHVLSLGGN 182
+ + + P L L L +N L V CK+ LSL
Sbjct: 41 EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 37.3 bits (84), Expect = 0.003
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 21 TVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLS-----FFPDNA 75
++ I++LD L A + LL + L L+
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQ---------CQVVRLDDCGLTEARCKDISSAL 51
Query: 76 SKFTNLRSLDLSNNRIT 92
L L+L +N +
Sbjct: 52 RVNPALAELNLRSNELG 68
Score = 36.1 bits (81), Expect = 0.006
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 30/121 (24%)
Query: 69 SFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNL 128
+ LR L L++ ++ + SL + +L
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDS-------------------SCSSLAATLLANHSL 399
Query: 129 KVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLNH-VPREINKLCK----LHVL 177
+ +LS N L I L L+ L L + + + + L K L V+
Sbjct: 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Query: 178 S 178
S
Sbjct: 460 S 460
Score = 35.3 bits (79), Expect = 0.012
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 149 PTLKYLYLGNNSLN-----HVPREINKLCKLHVLSLGGNSLTD-----IPDTFGD-LYQL 197
L+ L+L + ++ + + L L L N L D + ++ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 198 EALILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
E L+L D S L++L LR +
Sbjct: 429 EQLVLYDIYW-----SEEMEDRLQALEKDKPSLRVI 459
Score = 34.2 bits (76), Expect = 0.028
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 196 QLEALILSDNQL-----ESLPASISNLKMLKSLLLHNNKLRTLPTEII--TLKCLSEKLK 248
L L L+D + SL A++ L+ L L NN L + +++ L+
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429
Query: 249 SLLLHNNKL 257
L+L++
Sbjct: 430 QLVLYDIYW 438
Score = 31.9 bits (70), Expect = 0.13
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 47 PNNDYNKKPENIDTLLLYHNNLS-----FFPDNASKFTNLRSLDLSNNRIT-----HLPQ 96
+ + L L ++S +LR LDLSNN + L +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 97 AITNFP--LSTLIARNNLLTAESLPKDMSNLKN 127
++ L L+ + + E + + K+
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452
Score = 29.2 bits (63), Expect = 1.0
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 24/86 (27%)
Query: 197 LEALILSDNQL--ESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254
+++L + +L + L+ + + L + L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT----------------------E 41
Query: 255 NKLRTLPTEIITLKCLSELSLRDNPL 280
+ + + + + L+EL+LR N L
Sbjct: 42 ARCKDISSALRVNPALAELNLRSNEL 67
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 41.9 bits (97), Expect = 4e-05
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 8/172 (4%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
+ID ++ ++++ N+ L L+ N++T + + N + +
Sbjct: 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDE---- 99
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
+ S K+ +LS I L N+ +++L KL
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD 159
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHN 227
LSL N ++DI L +L+ L LS N + L +++ LK L L L +
Sbjct: 160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209
Score = 33.4 bits (75), Expect = 0.030
Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 14/180 (7%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLS 134
++ ++ + +N+ I + Q I P ++ L N LT D+ L NLK
Sbjct: 43 NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT------DIKPLANLKNLGWL 95
Query: 135 GNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDL 194
+ K L GN+ L
Sbjct: 96 FLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL 155
Query: 195 YQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHN 254
+L+ L L DNQ+ + ++ L L++L L N + L + LK L L L +
Sbjct: 156 TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLK----NLDVLELFS 209
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 40.3 bits (92), Expect = 2e-04
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 187 IPDTFGDLYQLEALILSDNQLESLPASI-SNLKMLKSLLLHNNKLRTLPT 235
D F L +S ++ SLP+ NLK L++ L+ LPT
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLPT 240
Score = 33.7 bits (75), Expect = 0.027
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 213 SISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSL-LLHNNKLRTLPT 262
L + ++ +LP+ + E LK L L+ LPT
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGL------ENLKKLRARSTYNLKKLPT 240
Score = 33.0 bits (73), Expect = 0.046
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 168 INKLCKLHVLSLGGNSLTDIP-DTFGDLYQLEALILSDNQLESLP 211
+ +L + + +P +L +L S L+ LP
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLKKLP 239
Score = 33.0 bits (73), Expect = 0.047
Identities = 33/225 (14%), Positives = 66/225 (29%), Gaps = 9/225 (4%)
Query: 59 DTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLP-QAITNFPLST---LIARNNLLT 114
L + ++ P + N L ++ + A + F + + L
Sbjct: 11 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 115 AESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKL 174
E+ + + N L P ++P L+YL + N + H+P
Sbjct: 69 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128
Query: 175 HVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
VL +++ L + ++ I N + L N
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188
Query: 235 TEIITLKCLS--EKLKSLLLHNNKLRTLPTEIIT-LKCLSELSLR 276
E + L + ++ +LP+ + LK L S
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
Score = 33.0 bits (73), Expect = 0.051
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 25/67 (37%)
Query: 76 SKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSG 135
+ LD+S RI LP + NLK L+ +
Sbjct: 198 HGASGPVILDISRTRIHSLP-----------------------SYGLENLKKLRARST-- 232
Query: 136 NQLEQFP 142
L++ P
Sbjct: 233 YNLKKLP 239
Score = 31.4 bits (69), Expect = 0.14
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 122 MSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYL-YLGNNSLNHVP 165
+ ++S ++ P L+ LK L +L +P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLE--NLKKLRARSTYNLKKLP 239
Score = 31.0 bits (68), Expect = 0.19
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPA-SISNLKMLKSLLLHNN 228
C V + +T+IP L +L + + S L+ + + N
Sbjct: 8 CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63
Score = 29.9 bits (65), Expect = 0.51
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 147 DIPTLKYLYLGNNSLNHVPREI-NKLCKLHVLSLGGNSLTDIP 188
L + ++ +P L KL S +L +P
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 239
Score = 28.0 bits (60), Expect = 2.0
Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 127 NLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPRE 167
+ +VF +++ + P + L L + +
Sbjct: 9 SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKG 47
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 38.6 bits (89), Expect = 4e-04
Identities = 33/153 (21%), Positives = 52/153 (33%), Gaps = 8/153 (5%)
Query: 85 DLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQ 144
+L ++ L ++ + A + L D+ V N + I
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALD--LKGLRSDPDLVAQNIDVVLNRRSSMAATLRII 60
Query: 145 ILDIPTLKYLYLGNNSL---NHVPREINKLCKLHVLSLGGNSLTDIPD-TFGDLYQLEAL 200
+IP L L L NN L + + + K L +L+L GN L + +LE L
Sbjct: 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120
Query: 201 ILSDNQLESLPASISNLKMLKSLLLHNNKLRTL 233
L N L S ++ KL L
Sbjct: 121 WLDGNSLSDTFRDQSTYI--SAIRERFPKLLRL 151
Score = 28.2 bits (62), Expect = 1.2
Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 22/134 (16%)
Query: 35 DSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHL 94
D A ++ L ++ L + + L SL+LSNNR+
Sbjct: 21 DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR- 79
Query: 95 PQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFP-IQILDIPTLKY 153
+ + + NLK+ NLSGN+L+ + + L+
Sbjct: 80 --------------------LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119
Query: 154 LYLGNNSLNHVPRE 167
L+L NSL+ R+
Sbjct: 120 LWLDGNSLSDTFRD 133
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 37.3 bits (85), Expect = 0.002
Identities = 35/199 (17%), Positives = 65/199 (32%), Gaps = 13/199 (6%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
+ I TL + ++ NL L+L +N+IT L L L +
Sbjct: 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPL------KNLTKITELELS 93
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
+ K++S + L+ Q L +
Sbjct: 94 GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNL 153
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
GN+ +L +L L DN++ + +++L L + L NN++ +
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQI----S 208
Query: 236 EIITLKCLSEKLKSLLLHN 254
++ L S L + L N
Sbjct: 209 DVSPLANTS-NLFIVTLTN 226
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 27/74 (36%)
Query: 64 YHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMS 123
N +S + NL + L NN+I+ + ++
Sbjct: 181 DDNKISDISP-LASLPNLIEVHLKNNQISDVS-------------------------PLA 214
Query: 124 NLKNLKVFNLSGNQ 137
N NL + L+ NQ
Sbjct: 215 NTSNLFIVTLT-NQ 227
Score = 26.5 bits (57), Expect = 5.8
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 185 TDIPDTFGD--LYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
T I F D L + + + + ++L + +L + T+
Sbjct: 7 TAINVIFPDPALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIE 57
Score = 25.8 bits (55), Expect = 9.2
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 154 LYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQL 207
+ G +++ + L + LS G +T I L L L L DNQ+
Sbjct: 24 IAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQI 75
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 36.2 bits (82), Expect = 0.003
Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 8/168 (4%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
+ + TL + D NL ++ SNN++T IT T + +
Sbjct: 40 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNN 94
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
+ N + ++ L L L +N+++ +
Sbjct: 95 QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 154
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSL 223
+ N +TD+ +L LE L +S N++ + ++ L L+SL
Sbjct: 155 LNF-SSNQVTDLKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESL 199
Score = 29.2 bits (64), Expect = 0.56
Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 8/179 (4%)
Query: 56 ENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTA 115
+L N++ + + +L I + + L + +
Sbjct: 18 AEKMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSID------GVEYLNNLTQINFS 70
Query: 116 ESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
+ D++ LKNL Q L + + K
Sbjct: 71 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLP 234
++ L L+ L S NQ+ L ++NL L+ L + +NK+ +
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS 188
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 36.4 bits (82), Expect = 0.004
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 126 KNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLN-----HVPREINKLCKLHVLSLG 180
K+LK+ ++ + +L+ ++K + L N++ + I L +
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 181 GNSLTDIPD 189
+ D
Sbjct: 68 DIFTGRVKD 76
Score = 36.4 bits (82), Expect = 0.004
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 169 NKLCKLHVLSLGGNSLTD------IPDTFGDLYQLEALILSDNQLESLPASISNLKMLKS 222
+ L L L N + + L L L+ N+ + ++ + S
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 329
Query: 223 LLLHNN 228
Sbjct: 330 TRGRGE 335
Score = 32.5 bits (72), Expect = 0.086
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 115 AESLPKDMSNLKNLKVFNLSGNQL-----EQFPIQILDIPTLKYLYLGNNSLNHVPREIN 169
+S+ + ++K LSGN + I L+ + V EI
Sbjct: 20 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 79
Query: 170 KLCK 173
+ +
Sbjct: 80 EALR 83
Score = 31.8 bits (70), Expect = 0.12
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 20/77 (25%)
Query: 77 KFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDM-SNLKNLKVFNLSG 135
+ L++L L N I +L + + +L L+G
Sbjct: 271 ENIGLQTLRLQYNEIELD-------------------AVRTLKTVIDEKMPDLLFLELNG 311
Query: 136 NQLEQFPIQILDIPTLK 152
N+ + + +I +
Sbjct: 312 NRFSEEDDVVDEIREVF 328
Score = 31.8 bits (70), Expect = 0.15
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 124 NLKNLKVFNLSGNQLEQFPIQIL------DIPTLKYLYLGNNSLNHVPREINKLCKLHVL 177
L+ L N++E ++ L +P L +L L N + ++++ ++
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV-FS 329
Query: 178 SLGGNSLTDIPD 189
+ G L ++ D
Sbjct: 330 TRGRGELDELDD 341
Score = 31.0 bits (68), Expect = 0.22
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 65 HNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSN 124
+ + +++ + LS N I A L +++++
Sbjct: 17 TEDEKSVFAVLLEDDSVKEIVLSGNTIG-------------------TEAARWLSENIAS 57
Query: 125 LKNLKVFNLSGNQLEQFPIQI 145
K+L++ S + +I
Sbjct: 58 KKDLEIAEFSDIFTGRVKDEI 78
Score = 30.2 bits (66), Expect = 0.37
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 44 ELLPNNDYNKKPENIDTLLLYHNNLS------FFPDNASKFTNLRSLDLSNNRITHLPQA 97
+ + + + TL L +N + K +L L+L+ NR +
Sbjct: 261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV 320
Query: 98 ITNFPLSTLIARNNLLTAESLPKD 121
+ + + + + L
Sbjct: 321 VDE--IREVFSTRGRGELDELDDM 342
Score = 27.2 bits (58), Expect = 3.7
Identities = 13/143 (9%), Positives = 41/143 (28%)
Query: 244 SEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTL 303
+ LK + +++ ++ + E+ L N + ++ S +L
Sbjct: 7 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 304 KVHEIDYSQEHLPQNLVQYLESAHHCVNPKCKGVFFDNRIEHIKFVDFCGKYRIPLLQYL 363
++ +P+ L L++ C + + + + L++L
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126
Query: 364 CSSRCITNSPNVMYGDVKNEDMM 386
+++
Sbjct: 127 YLHNNGLGPQAGAKIARALQELA 149
Score = 27.2 bits (58), Expect = 3.7
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 216 NLKMLKSLLLHNNKLRTLPTEIIT--LKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSEL 273
L++L L N++ + + L L L+ N+ + ++ +
Sbjct: 271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 330
Query: 274 SLRDN 278
R
Sbjct: 331 RGRGE 335
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 33.6 bits (75), Expect = 0.021
Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 8/182 (4%)
Query: 60 TLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAIT---NFPLSTLIARNNLLTAE 116
T+ L P + + L L++N + + L L + N LT
Sbjct: 12 TVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREI-NKLCKLH 175
++ E L + LK L L +N ++ V L L
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 176 VLSLGGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHNNKLRTLPT 235
L+L N L L+ + S ++ ++ L +++ +
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC--GAPSKVRDVQIKDLPHSEFKCSSE 187
Query: 236 EI 237
Sbjct: 188 NS 189
Score = 33.2 bits (74), Expect = 0.027
Identities = 28/153 (18%), Positives = 53/153 (34%), Gaps = 4/153 (2%)
Query: 82 RSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF 141
++D + + +P+ I + L+ +N L S L +L L NQL
Sbjct: 11 TTVDCTGRGLKEIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 142 PIQILDIPTLKYLYLGNNS--LNHVPREINKLCKLHVLSLGGNSLTDI-PDTFGDLYQLE 198
+ + + + L +L L+L N ++ + P +F L L
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 199 ALILSDNQLESLPASISNLKMLKSLLLHNNKLR 231
+L L+ N + L+ L+ R
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR 162
>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn
(Marsupenaeus japonicus) [TaxId: 27405]}
Length = 78
Score = 30.5 bits (69), Expect = 0.053
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 330 VNPKCKGVFFD----NRIEHIKFVDFC-GKYRIPLLQYLCSSRCITNS 372
++ C+GV + ++ + + C +R+P L +C +RC N
Sbjct: 4 IDNTCRGVMGNRDIYKKVVRV--CEDCTNIFRLPGLDGMCRNRCFYNE 49
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 32.8 bits (73), Expect = 0.056
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 15/154 (9%)
Query: 25 KTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHNNLSFFPDNASKFTNLRSL 84
+TLD + +L + + + + + ++ +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-----------GVIAFRCPRSFMDQPLAEHFSPFRVQHM 51
Query: 85 DLSNNRIT--HLPQAITNFP-LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQF 141
DLSN+ I L ++ L L L+ + + ++ NL NLSG
Sbjct: 52 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSE 110
Query: 142 PIQILDIPTLKYLYLGNNSLNHVPREINKLCKLH 175
+ + L N S E + +
Sbjct: 111 FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144
Score = 27.0 bits (58), Expect = 4.5
Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 28/237 (11%)
Query: 7 SSSSSDSSDSDSFKTVSIKTLDFSYSSLDSETLATQIELLPNNDYNKKPENIDTLLLYHN 66
S D ++ F ++ +D S S ++ TL + + L L
Sbjct: 31 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK---------LQNLSLEGL 81
Query: 67 NLSF-FPDNASKFTNLRSLDLSNNR-ITHLPQAITNFPLSTLIARNNLL--------TAE 116
LS + +K +NL L+LS + S L N
Sbjct: 82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141
Query: 117 SLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCK--- 173
++ + L + N + ++ ++S+ + +
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201
Query: 174 LHVLSLGGNSL--TDIPDTFGDLYQLEAL----ILSDNQLESLPASISNLKMLKSLL 224
L LSL + G++ L+ L I+ D L+ L ++ +L++ S
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHF 258
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 31.7 bits (70), Expect = 0.069
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 5/111 (4%)
Query: 172 CKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDNQ-LESLPASI-SNLKMLKSLLLHNNK 229
L + D L L + + Q L+ L L L++L + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 230 LRTLPTEIITLKCLSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPL 280
LR + + +L N L +L + + L EL L NPL
Sbjct: 68 LRFVAPDAFHFTPRLSRLNL---SFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 31.3 bits (69), Expect = 0.11
Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 28/172 (16%)
Query: 55 PENIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNR-ITHLPQAITNFPLSTLIARNNLL 113
P L + + NL L + N + + HL
Sbjct: 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE------------------ 48
Query: 114 TAESLPKDMSNLKNLKVFNLSGNQLE-QFPIQILDIPTLKYLYLGNNSLNHVPREINKLC 172
+D+ L L+ + + L P P L L L N+L + + +
Sbjct: 49 -----LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103
Query: 173 KLHVLSLGGNSL--TDIPDTFGDLYQLEALILSDNQLE-SLPASISNLKMLK 221
L L L GN L + + + + +L+ ++++
Sbjct: 104 SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 30.4 bits (67), Expect = 0.26
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 183 SLTDIPDT---FGDLYQLEALILSDNQL-------ESLPASISNLKMLKSLLLHNNKLRT 232
T I D F + + A +L E + A++S LK K L L N +
Sbjct: 3 KATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK 62
Query: 233 LP 234
+
Sbjct: 63 IS 64
Score = 30.0 bits (66), Expect = 0.34
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 14/187 (7%)
Query: 92 THLPQAITNFP---------LSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFP 142
T + AI F + + E + +S LK K LS N +E+
Sbjct: 5 TTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS 64
Query: 143 IQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALIL 202
+ + L+ L LG N + + L L + N + + + +
Sbjct: 65 -SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123
Query: 203 SDNQLE-SLPASISNLKMLKSLLLHNNKLRTLPTEIITLKCLSEKLKSLLLHNNKLRTLP 261
++ ++ L L+ LLL N L E + ++ L+ L
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE---VVKRLPNLKKLD 180
Query: 262 TEIITLK 268
+ +
Sbjct: 181 GMPVDVD 187
Score = 28.1 bits (61), Expect = 1.4
Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 27/183 (14%)
Query: 61 LLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHLPQAITNFPLSTLIARNNLLTAESLPK 120
L + S + L LS N I +
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS------------------------- 64
Query: 121 DMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHV-LSL 179
+S ++NL++ +L N +++ TL+ L++ N + + + + +S
Sbjct: 65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN 124
Query: 180 GGNSLTDIPDTFGDLYQLEALILSDNQLESLPASISNLKMLKSLLLHN-NKLRTLPTEII 238
+ D L +LE L+L+ N L + + + ++ L+ L +
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV 184
Query: 239 TLK 241
+
Sbjct: 185 DVD 187
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 26.5 bits (58), Expect = 2.9
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 6 GSSSSSDSSDSDS-------FKTVSIKTLDFSYSSLD-SETLATQI-ELLPNNDYNKKPE 56
GSS SS S VS KT +F +S D + +A + + P + ++
Sbjct: 1 GSSGSSGMSSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVS 60
Query: 57 NIDTLLLYHNNLSFFPDNASKFTNLRSLDLSNNRITHL 94
+ + L L + F N + L +L L + T +
Sbjct: 61 SPNILRLIYQG-RFLHGNVT----LGALKLPFGKTTVM 93
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 173
Score = 26.1 bits (57), Expect = 5.3
Identities = 12/105 (11%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 101 FPLSTLIARNNLLTAESLPKDMSNLKNLKVFNLSGNQLEQFPIQILDIPTLKYLYLGNNS 160
+ L + L + + + N + + E++ + ++D +L++G ++
Sbjct: 4 YSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDA 63
Query: 161 LNHVPREINKLCKLHVLSLGGNSLTDIPDTFGDLYQLEALILSDN 205
+ + ++ G + DIP ++ +E +
Sbjct: 64 VPALVFDV----------FGTQDIFDIPIGKQEIPVVENSEFNQR 98
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 120
Score = 25.6 bits (56), Expect = 5.7
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 243 LSEKLKSLLLHNNKLRTLPTEIITLKCLSELSLRDNPLVIRFVSDMTYKPPS 294
LSEK+K L E+ T++ L SL P+ SD S
Sbjct: 21 LSEKIKEFLQEKKMQSFYQQELETVESL--QSLASRPVTHSTGSDQVELKDS 70
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1
(mkp3) [TaxId: 9606]}
Length = 144
Score = 25.9 bits (56), Expect = 6.4
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 141 FPIQILDIPTLKYLYLGNNSLNHVPREINKLCKLHVLS 178
FP++IL +LYLG + + + ++L+
Sbjct: 3 FPVEILP-----FLYLGCAKDSTNLDVLEEFGIKYILN 35
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 26.1 bits (56), Expect = 7.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 154 LYLGNNSLNHVPREINKLCKLHVLSLGGNSLT 185
L +++ H+P +KL L SL G+S T
Sbjct: 279 LGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 310
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex
aeolicus [TaxId: 63363]}
Length = 392
Score = 26.4 bits (58), Expect = 7.8
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 149 PTLKYLYLGNNSLNHVPREINKLCKLHVLSLGGNSL 184
P G + + +I L ++ S L
Sbjct: 326 PIKVRKVYGELPVEVLCSQILSLTLMNYSSFQPIKL 361
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 200
Score = 25.7 bits (55), Expect = 9.7
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 14/137 (10%)
Query: 263 EIITLKCLSELSLRDNPLVIRFVSDMTYKPPSLLELASRTLKVHEIDYSQEHLPQNLVQY 322
EII + L+ + F +P +L+ + + I Q Q
Sbjct: 28 EIIEFPVV-LLNTHTLEIEDTF--QQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 84
Query: 323 LES-----------AHHCVNPKCKGVFFDNRIEHIKFVDFCGKYRIPLLQYLCSSRCITN 371
L+ + + G + ++ +I+ KY +++ + N
Sbjct: 85 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGN 144
Query: 372 SPNVMYGDVKNEDMMKK 388
V K M++K
Sbjct: 145 FYKVPRSQTKLTIMLEK 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,344,131
Number of extensions: 61720
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 132
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)