BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3967
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JD6|A Chain A, Crystal Structure Of Diap1-bir2/hid Complex
pdb|1JD5|A Chain A, Crystal Structure Of Diap1-Bir2GRIM
pdb|1JD4|A Chain A, Crystal Structure Of Diap1-Bir2
pdb|1JD4|B Chain B, Crystal Structure Of Diap1-Bir2
pdb|1Q4Q|A Chain A, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|B Chain B, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|C Chain C, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|D Chain D, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|E Chain E, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|F Chain F, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|G Chain G, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|H Chain H, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|I Chain I, Crystal Structure Of A Diap1-Dronc Complex
pdb|1Q4Q|J Chain J, Crystal Structure Of A Diap1-Dronc Complex
Length = 124
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 66/100 (66%)
Query: 164 NSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWE 223
N P +P YA +RLR+F++WP +L+ KP L EAGFFYTG D+ CF CGGGL W
Sbjct: 15 NYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWN 74
Query: 224 ETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVAND 263
+ D+PW +HA W S C +VKL+KGQ +I+ V +A +
Sbjct: 75 DNDEPWEQHALWLSQCRFVKLMKGQLYIDTVAAKPVLAEE 114
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 37 TLECDRLDSFKNSWPLTYLSA-KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQG 95
+E RL +F+ +WP Q+A AGF++ G D V+C CG L W
Sbjct: 24 AIETARLRTFE-AWPRNLKQKPHQLAEAGFFYTG------VGDRVRCFSCGGGLMDWNDN 76
Query: 96 DDPLKDHEKWSPNCWFLRRLK 116
D+P + H W C F++ +K
Sbjct: 77 DEPWEQHALWLSQCRFVKLMK 97
>pdb|1TW6|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
pdb|1TW6|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE
DERIVED From Smac
Length = 133
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 57/88 (64%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
PAFP + E RL SF WP++ + P L AGFF+TG D+ CF C GGL+ W+ D
Sbjct: 40 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPWTEHA+WF C ++ KGQE+IN +
Sbjct: 100 DPWTEHAKWFPGCQFLLRSKGQEYINNI 127
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
M E RL SF + WPLT + + +AAAGF+ G + D V+C FC L W
Sbjct: 44 GMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGHQ------DKVRCFFCYGGLQSWK 96
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
+GDDP +H KW P C FL R K
Sbjct: 97 RGDDPWTEHAKWFPGCQFLLRSK 119
>pdb|2I3H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer
Peptide (avpw)
pdb|2I3I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|2I3I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7H|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3F7I|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3F7I|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GT9|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GT9|B Chain B, Structure Of An Ml-iap/xiap Chimera Bound To A
Peptidomimetic
pdb|3GTA|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
pdb|3GTA|B Chain B, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A
PEPTIDOMIMETIC
Length = 133
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 57/88 (64%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
PAFP + E RL SF WP++ + P L AGFF+TG D+ CF C GGL+ W+ D
Sbjct: 40 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPWTEHA+WF C ++ KGQE+IN +
Sbjct: 100 DPWTEHAKWFPGCQFLLRSKGQEYINNI 127
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
M E RL SF + WPLT + + +AAAGF+ G + D V+C FC L W
Sbjct: 44 GMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGHQ------DKVRCFFCYGGLQSWK 96
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
+GDDP +H KW P C FL R K
Sbjct: 97 RGDDPWTEHAKWFPGCQFLLRSK 119
>pdb|3UW5|A Chain A, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
pdb|3UW5|B Chain B, Crystal Structure Of The Bir Domain Of Mliap Bound To
Gdc0152
Length = 116
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 57/88 (64%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
PAFP + E RL SF WP++ + P L AGFF+TG D+ CF C GGL+ W+ D
Sbjct: 23 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 82
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPWTEHA+WF C ++ KGQE+IN +
Sbjct: 83 DPWTEHAKWFPGCQFLLRSKGQEYINNI 110
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
M E RL SF + WPLT + + +AAAGF+ G + D V+C FC L W
Sbjct: 27 GMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGHQ------DKVRCFFCYGGLQSWK 79
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
+GDDP +H KW P C FL R K
Sbjct: 80 RGDDPWTEHAKWFPGCQFLLRSK 102
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE DDPW EHA
Sbjct: 5 THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHA 64
Query: 234 RWFSSCPYVKLVKGQEFINQVIGH 257
+WF C ++ +KGQEF++++ G
Sbjct: 65 KWFPRCEFLIRMKGQEFVDEIQGR 88
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R+ +F WP + + +Q+A+AGFY++G+ +DDVKC C L W
Sbjct: 2 SMQTHAARMRTFM-YWPSSVPVQPEQLASAGFYYVGR------NDDVKCFSCDGGLRCWE 54
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
GDDP +H KW P C FL R+K
Sbjct: 55 SGDDPWVEHAKWFPRCEFLIRMK 77
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
R CK+C +E+ VVF+PCGH+V C
Sbjct: 296 RTCKVCMDKEVSVVFIPCGHLVVC 319
>pdb|3F7G|A Chain A, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|B Chain B, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|C Chain C, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|D Chain D, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
pdb|3F7G|E Chain E, Structure Of The Bir Domain From Ml-Iap Bound To A
Peptidomimetic
Length = 140
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
PAFP + E RL SF WP++ + P L AGFF+TG D+ CF C GGL+ W+ D
Sbjct: 40 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPWTEHA+WF SC ++ KG++F++ V
Sbjct: 100 DPWTEHAKWFPSCQFLLRSKGRDFVHSV 127
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
M E RL SF + WPLT + + +AAAGF+ G + D V+C FC L W
Sbjct: 44 GMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGHQ------DKVRCFFCYGGLQSWK 96
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
+GDDP +H KW P+C FL R K
Sbjct: 97 RGDDPWTEHAKWFPSCQFLLRSK 119
>pdb|1OXN|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXN|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OXQ|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (Ml-Iap)
pdb|1OY7|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|B Chain B, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|C Chain C, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|D Chain D, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
pdb|1OY7|E Chain E, Structure And Function Analysis Of Peptide Antagonists Of
Melanoma Inhibitor Of Apoptosis (ml-iap)
Length = 140
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 58/88 (65%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
PAFP + E RL SF WP++ + P L AGFF+TG D+ CF C GGL+ W+ D
Sbjct: 40 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPWTEHA+WF SC ++ KG++F++ V
Sbjct: 100 DPWTEHAKWFPSCQFLLRSKGRDFVHSV 127
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
M E RL SF + WPLT + + +AAAGF+ G + D V+C FC L W
Sbjct: 44 GMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGHQ------DKVRCFFCYGGLQSWK 96
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
+GDDP +H KW P+C FL R K
Sbjct: 97 RGDDPWTEHAKWFPSCQFLLRSK 119
>pdb|4HY4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY4|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3170284
pdb|4HY5|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
pdb|4HY5|B Chain B, Crystal Structure Of Ciap1 Bir3 Bound To T3256336
Length = 115
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 62/100 (62%)
Query: 157 EKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCG 216
E L S + + T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C
Sbjct: 14 ENLYFQGGSSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCD 73
Query: 217 GGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
GGL+ WE DDPW EHA+WF C ++ +KGQEF++++ G
Sbjct: 74 GGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQG 113
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R+ +F WP + + +Q+A+AGFY++G+ +DDVKC C L W
Sbjct: 28 SMQTHAARMRTFM-YWPSSVPVQPEQLASAGFYYVGR------NDDVKCFCCDGGLRCWE 80
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
GDDP +H KW P C FL R+K
Sbjct: 81 SGDDPWVEHAKWFPRCEFLIRMK 103
>pdb|3UW4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152
Length = 92
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE DDPW EHA
Sbjct: 6 THAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHA 65
Query: 234 RWFSSCPYVKLVKGQEFINQV 254
+WF C ++ +KGQE+IN +
Sbjct: 66 KWFPGCEFLIRMKGQEYINNI 86
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R+ +F WP + + +Q+AAAGFY++G+ +DDVKC C L W
Sbjct: 3 HMQTHAARMRTFM-YWPSSVPVQPEQLAAAGFYYVGR------NDDVKCFSCDGGLRCWE 55
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
GDDP +H KW P C FL R+K
Sbjct: 56 SGDDPWVEHAKWFPGCEFLIRMK 78
>pdb|3MUP|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3MUP|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac037
pdb|3OZ1|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|B Chain B, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|C Chain C, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|3OZ1|D Chain D, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic
Compound Smac066
pdb|4EB9|A Chain A, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|B Chain B, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|C Chain C, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
pdb|4EB9|D Chain D, Ciap1-Bir3 In Complex With A Divalent Smac Mimetic
Length = 122
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE DDPW EHA
Sbjct: 19 THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 78
Query: 234 RWFSSCPYVKLVKGQEFINQVIG 256
+WF C ++ +KGQEF++++ G
Sbjct: 79 KWFPRCEFLIRMKGQEFVDEIQG 101
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R+ +F WP + + +Q+A+AGFY++G+ +DDVKC C L W
Sbjct: 16 SMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGR------NDDVKCFCCDGGLRCWE 68
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
GDDP +H KW P C FL R+K
Sbjct: 69 SGDDPWVEHAKWFPRCEFLIRMK 91
>pdb|2UVL|A Chain A, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
pdb|2UVL|B Chain B, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 3 (Birc3)
Length = 96
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
T+ +R ++F +WP S+ + P L AGF+Y G +D CF C GGL+ WE DDPW +HA
Sbjct: 13 THAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQHA 72
Query: 234 RWFSSCPYVKLVKGQEFINQV 254
+WF C Y+ +KGQEFI QV
Sbjct: 73 KWFPRCEYLIRIKGQEFIRQV 93
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTYL-SAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R +F N WP + L + +Q+A+AGFY++G SDDVKC C L W
Sbjct: 10 SMQTHAARFKTFFN-WPSSVLVNPEQLASAGFYYVGN------SDDVKCFCCDGGLRCWE 62
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
GDDP H KW P C +L R+K
Sbjct: 63 SGDDPWVQHAKWFPRCEYLIRIK 85
>pdb|3D9T|A Chain A, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9T|B Chain B, Ciap1-Bir3 In Complex With N-Terminal Peptide From
Caspase- 9 (Atpfqe)
pdb|3D9U|A Chain A, The Bir3 Domain Of Ciap1 In Complex With The N Terminal
Peptide From SmacDIABLO (AVPIAQ)
Length = 97
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE DDPW EHA
Sbjct: 13 THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 72
Query: 234 RWFSSCPYVKLVKGQEFINQVIG 256
+WF C ++ +KGQEF++++ G
Sbjct: 73 KWFPRCEFLIRMKGQEFVDEIQG 95
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R+ +F WP + + +Q+A+AGFY++G+ +DDVKC C L W
Sbjct: 10 SMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGR------NDDVKCFCCDGGLRCWE 62
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
GDDP +H KW P C FL R+K
Sbjct: 63 SGDDPWVEHAKWFPRCEFLIRMK 85
>pdb|1QBH|A Chain A, Solution Structure Of A Baculoviral Inhibitor Of Apoptosis
(Iap) Repeat
Length = 101
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE DDPW EHA
Sbjct: 6 THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 65
Query: 234 RWFSSCPYVKLVKGQEFINQVIG 256
+WF C ++ +KGQEF++++ G
Sbjct: 66 KWFPRCEFLIRMKGQEFVDEIQG 88
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R+ +F WP + + +Q+A+AGFY++G+ +DDVKC C L W
Sbjct: 3 HMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGR------NDDVKCFCCDGGLRCWE 55
Query: 94 QGDDPLKDHEKWSPNCWFLRRLK 116
GDDP +H KW P C FL R+K
Sbjct: 56 SGDDPWVEHAKWFPRCEFLIRMK 78
>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis
Repeat-Containing 1 (Birc1)
Length = 106
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 172 YATYESRLRSFDSWPISLR-LKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWT 230
Y E+RL SF +WP ++ + P L+EAGF +TGK D CF CGG L +WEE DDPW
Sbjct: 18 YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77
Query: 231 EHARWFSSCPYVKLVKGQEFINQVI 255
EHA+WF C +++ K E I Q I
Sbjct: 78 EHAKWFPKCEFLRSKKSSEEITQYI 102
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 10/86 (11%)
Query: 42 RLDSFKNSWPLTY--LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPL 99
RL SF+N WP +S ++ AGF F GK+ D V+C CG LG W +GDDP
Sbjct: 24 RLASFRN-WPFYVQGISPCVLSEAGFVFTGKQ------DTVQCFSCGGCLGNWEEGDDPW 76
Query: 100 KDHEKWSPNCWFLRRLKKGNTESAGY 125
K+H KW P C FLR KK + E Y
Sbjct: 77 KEHAKWFPKCEFLRS-KKSSEEITQY 101
>pdb|3CLX|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CLX|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac005
pdb|3CM2|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|C Chain C, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|E Chain E, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|F Chain F, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|G Chain G, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|H Chain H, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|I Chain I, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM2|J Chain J, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound, Smac010
pdb|3CM7|C Chain C, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|A Chain A, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|B Chain B, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
pdb|3CM7|D Chain D, Crystal Structure Of Xiap-Bir3 Domain In Complex With
Smac- Mimetic Compuond, Smac005
Length = 130
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 31 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 88
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 89 DPWEQHAKWYPGCKYLLEQKGQEYINNI 116
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 53 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 106
Query: 115 LK 116
K
Sbjct: 107 QK 108
>pdb|4HY0|A Chain A, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|B Chain B, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|C Chain C, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|D Chain D, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|E Chain E, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|F Chain F, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|G Chain G, Crystal Structure Of Xiap Bir3 With T3256336
pdb|4HY0|H Chain H, Crystal Structure Of Xiap Bir3 With T3256336
Length = 125
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 25 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 82
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 83 DPWEQHAKWYPGCKYLLEQKGQEYINNI 110
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 47 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 100
Query: 115 LK 116
K
Sbjct: 101 QK 102
>pdb|1F9X|A Chain A, Average Nmr Solution Structure Of The Bir-3 Domain Of Xiap
Length = 120
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 21 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 78
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 79 DPWEQHAKWYPGCKYLLEQKGQEYINNI 106
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 43 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 96
Query: 115 LK 116
K
Sbjct: 97 QK 98
>pdb|1G73|C Chain C, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
pdb|1G73|D Chain D, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
Length = 121
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 20 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 77
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 78 DPWEQHAKWYPGCKYLLEQKGQEYINNI 105
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 42 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 95
Query: 115 LK 116
K
Sbjct: 96 QK 97
>pdb|1G3F|A Chain A, Nmr Structure Of A 9 Residue Peptide From SmacDIABLO
Complexed To The Bir3 Domain Of Xiap
pdb|1TFQ|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
pdb|1TFT|A Chain A, Nmr Structure Of An Antagonists Of The Xiap-Caspase-9
Interaction Complexed To The Bir3 Domain Of Xiap
Length = 117
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 18 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 75
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 76 DPWEQHAKWYPGCKYLLEQKGQEYINNI 103
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 40 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 93
Query: 115 LK 116
K
Sbjct: 94 QK 95
>pdb|3EYL|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3EYL|B Chain B, Crystal Structure Of Xiap Bir3 Domain In Complex With A
Smac-Mimetic Compound
pdb|3G76|A Chain A, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|B Chain B, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|C Chain C, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|D Chain D, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|E Chain E, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|F Chain F, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|G Chain G, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|3G76|H Chain H, Crystal Structure Of Xiap-Bir3 In Complex With A Bivalent
Compound
pdb|4EC4|A Chain A, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|B Chain B, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|C Chain C, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|D Chain D, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|E Chain E, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|J Chain J, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|F Chain F, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|G Chain G, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|K Chain K, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
pdb|4EC4|L Chain L, Xiap-Bir3 In Complex With A Potent Divalent Smac Mimetic
Length = 122
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 17 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 74
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 75 DPWEQHAKWYPGCKYLLEQKGQEYINNI 102
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 39 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 92
Query: 115 LK 116
K
Sbjct: 93 QK 94
>pdb|2JK7|A Chain A, Xiap Bir3 Bound To A Smac Mimetic
Length = 116
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 17 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 74
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 75 DPWEQHAKWYPGCKYLLEQKGQEYINNI 102
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 39 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 92
Query: 115 LK 116
K
Sbjct: 93 QK 94
>pdb|2OPY|A Chain A, Smac Mimic Bound To Bir3-Xiap
Length = 106
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 9 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 66
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 67 DPWEQHAKWYPGCKYLLEQKGQEYINNI 94
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 31 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 84
Query: 115 LK 116
K
Sbjct: 85 QK 86
>pdb|2OPZ|A Chain A, Avpf Bound To Bir3-Xiap
pdb|2OPZ|B Chain B, Avpf Bound To Bir3-Xiap
pdb|2OPZ|C Chain C, Avpf Bound To Bir3-Xiap
pdb|2OPZ|D Chain D, Avpf Bound To Bir3-Xiap
Length = 109
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 9 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 66
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 67 DPWEQHAKWYPGCKYLLEQKGQEYINNI 94
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 31 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 84
Query: 115 LK 116
K
Sbjct: 85 QK 86
>pdb|1NW9|A Chain A, Structure Of Caspase-9 In An Inhibitory Complex With Xiap-
Bir3
Length = 98
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 5 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 62
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 63 DPWEQHAKWYPGCKYLLEQKGQEYINNI 90
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 27 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 80
Query: 115 LK 116
K
Sbjct: 81 QK 82
>pdb|3HL5|A Chain A, Crystal Structure Of Xiap Bir3 With Cs3
pdb|3HL5|B Chain B, Crystal Structure Of Xiap Bir3 With Cs3
Length = 95
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 6 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 63
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 64 DPWEQHAKWYPGCKYLLEQKGQEYINNI 91
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 28 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 81
Query: 115 LK 116
K
Sbjct: 82 QK 83
>pdb|2VSL|A Chain A, Crystal Structure Of Xiap Bir3 With A Bivalent Smac
Mimetic
Length = 96
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ + L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 8 PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 65
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 66 DPWEQHAKWYPGCKYLLEQKGQEYINNI 93
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
++ +Q+A AGFY LG+ D VKC CG L W +DP + H KW P C +L
Sbjct: 30 VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE 83
Query: 115 LK 116
K
Sbjct: 84 QK 85
>pdb|1XB0|A Chain A, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|B Chain B, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|C Chain C, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|D Chain D, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|E Chain E, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB0|F Chain F, Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|A Chain A, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|B Chain B, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|C Chain C, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|D Chain D, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|E Chain E, The Structure Of The Bir Domain Of Iap-Like Protein 2
pdb|1XB1|F Chain F, The Structure Of The Bir Domain Of Iap-Like Protein 2
Length = 108
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ YE+RL +F +W S+ + L AGF+ G+ D+ CF CGGGL +W+ +
Sbjct: 9 PRNPSMTGYEARLITFGTWMYSVNKE--QLARAGFYAIGQEDKVQCFHCGGGLANWKPKE 66
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KG E+IN +
Sbjct: 67 DPWEQHAKWYPGCKYLLEEKGHEYINNI 94
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGK 91
R +MT RL +F +W + ++ +Q+A AGFY +G++ D V+C CG L
Sbjct: 10 RNPSMTGYEARLITF-GTWMYS-VNKEQLARAGFYAIGQE------DKVQCFHCGGGLAN 61
Query: 92 WVQGDDPLKDHEKWSPNCWFL 112
W +DP + H KW P C +L
Sbjct: 62 WKPKEDPWEQHAKWYPGCKYL 82
>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|B Chain B, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|C Chain C, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|D Chain D, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|E Chain E, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
pdb|3SIQ|F Chain F, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain
Length = 136
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 19 DNRSTSTLLDKC----SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENG 74
DN + +T L K +R ++ E RL +F + WPL +L +Q+A G YF
Sbjct: 13 DNNTNATQLFKNNINKTRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA---- 67
Query: 75 RFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNT 120
D VKC FCG+E+G W Q D P+ +H++WSPNC LRR N
Sbjct: 68 --GDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTTNNV 111
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
E+RL++F WP+ L L + G ++T D+ CF CG + WE+ D P EH RW
Sbjct: 38 ETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRW 96
Query: 236 FSSCPYVK 243
+CP ++
Sbjct: 97 SPNCPLLR 104
>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex
pdb|3SIP|F Chain F, Crystal Structure Of Drice And Diap1-Bir1 Complex
Length = 115
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
+R ++ E RL +F + WPL +L +Q+A G YF D VKC FCG+E+G
Sbjct: 6 TRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA------GDKVKCFFCGVEIG 58
Query: 91 KWVQGDDPLKDHEKWSPNCWFLRRLKKGNT-----------ESAGYDTCGS 130
W Q D P+ +H++WSPNC LRR N YD CG+
Sbjct: 59 SWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPINAEALDRILPPISYDICGA 109
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
E+RL++F WP+ L L + G ++T D+ CF CG + WE+ D P EH RW
Sbjct: 15 ETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRW 73
Query: 236 FSSCPYVK 243
+CP ++
Sbjct: 74 SPNCPLLR 81
>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide
pdb|1SE0|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Grim Peptide
Length = 116
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
+R ++ E RL +F + WPL +L +Q+A G YF D VKC FCG+E+G
Sbjct: 7 TRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA------GDKVKCFFCGVEIG 59
Query: 91 KWVQGDDPLKDHEKWSPNCWFLRRLKKGNT-----------ESAGYDTCGS 130
W Q D P+ +H++WSPNC LRR N YD CG+
Sbjct: 60 SWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPINAEALDRILPPISYDICGA 110
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
E+RL++F WP+ L L + G ++T D+ CF CG + WE+ D P EH RW
Sbjct: 16 ETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRW 74
Query: 236 FSSCPYVK 243
+CP ++
Sbjct: 75 SPNCPLLR 82
>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap
Length = 117
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%)
Query: 145 SCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYT 204
S + + ++ + + + I P P + E+RL+SF +WP L P L AG +YT
Sbjct: 10 SETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYT 69
Query: 205 GKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
G DQ CF CGG LK+WE D W+EH R F +C +V
Sbjct: 70 GIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 107
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWP-LTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
R M E RL SF+N WP +L+ +++A+AG Y+ G D V+C CG +L
Sbjct: 33 RNPAMYSEEARLKSFQN-WPDYAHLTPRELASAGLYYTG------IGDQVQCFACGGKLK 85
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
W GD +H + PNC+F+
Sbjct: 86 NWEPGDRAWSEHRRHFPNCFFV 107
>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|F Chain F, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 121
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%)
Query: 145 SCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYT 204
S + + ++ + + + I P P + E+RL+SF +WP L P L AG +YT
Sbjct: 14 SETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYT 73
Query: 205 GKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
G DQ CF CGG LK+WE D W+EH R F +C +V
Sbjct: 74 GIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 111
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWP-LTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
R M E RL SF+N WP +L+ +++A+AG Y+ G D V+C CG +L
Sbjct: 37 RNPAMYSEEARLKSFQN-WPDYAHLTPRELASAGLYYTG------IGDQVQCFACGGKLK 89
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
W GD +H + PNC+F+
Sbjct: 90 NWEPGDRAWSEHRRHFPNCFFV 111
>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|D Chain D, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 141
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 45/76 (59%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P + E+RL+SF +WP L P L AG +YTG DQ CF CGG LK+WE D
Sbjct: 36 PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 95
Query: 227 DPWTEHARWFSSCPYV 242
W+EH R F +C +V
Sbjct: 96 RAWSEHRRHFPNCFFV 111
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWP-LTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
R M E RL SF+N WP +L+ +++A+AG Y+ G D V+C CG +L
Sbjct: 37 RNPAMYSEEARLKSFQN-WPDYAHLTPRELASAGLYYTG------IGDQVQCFCCGGKLK 89
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
W D +H + PNC+F+
Sbjct: 90 NWEPCDRAWSEHRRHFPNCFFV 111
>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|D Chain D, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 119
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 147 SQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGK 206
+ + ++ + + + I P P E+RL+SF +WP L P L AG +YTG
Sbjct: 12 THADYLLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGI 71
Query: 207 ADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
DQ CF CGG LK+WE D W+EH R F +C +V
Sbjct: 72 GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWP-LTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
R M E RL SF+N WP +L+ +++A+AG Y+ G D V+C CG +L
Sbjct: 33 RNPAMYCEEARLKSFQN-WPDYAHLTPRELASAGLYYTG------IGDQVQCFCCGGKLK 85
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
W D +H + PNC+F+
Sbjct: 86 NWEPCDRAWSEHRRHFPNCFFV 107
>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|F Chain F, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 117
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 147 SQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGK 206
+ + ++ + + + I P P E+RL+SF +WP L P L AG +YTG
Sbjct: 12 THADYLLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGI 71
Query: 207 ADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
DQ CF CGG LK+WE D W+EH R F +C +V
Sbjct: 72 GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWP-LTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
R M E RL SF+N WP +L+ +++A+AG Y+ G D V+C CG +L
Sbjct: 33 RNPAMYCEEARLKSFQN-WPDYAHLTPRELASAGLYYTG------IGDQVQCFCCGGKLK 85
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
W D +H + PNC+F+
Sbjct: 86 NWEPCDRAWSEHRRHFPNCFFV 107
>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex
pdb|3M0D|D Chain D, Crystal Structure Of The Traf1:traf2:ciap2 Complex
Length = 75
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 178 RLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFS 237
R+ ++ ++P + + +L AGF+YTG D+ CF CG L +W+ D P +H + +
Sbjct: 8 RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEKHKKLYP 67
Query: 238 SCPYVK 243
SC +V+
Sbjct: 68 SCRFVQ 73
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 55 LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR 114
+S + +A AGFY+ G +D VKC CG+ L W +GD P + H+K P+C F++
Sbjct: 21 VSERSLARAGFYYTG------VNDKVKCFCCGLMLDNWKRGDSPTEKHKKLYPSCRFVQS 74
Query: 115 L 115
L
Sbjct: 75 L 75
>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1
pdb|3M1D|B Chain B, Structure Of Bir1 From Ciap1
Length = 85
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 178 RLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFS 237
R+ ++ ++P + + +L AGF+YTG D+ CF CG L +W+ D P +H + +
Sbjct: 15 RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYP 74
Query: 238 SCPYVK 243
SC +++
Sbjct: 75 SCSFIQ 80
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 33 KQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKW 92
K + + E R+ ++ +S + +A AGFY+ G +D VKC CG+ L W
Sbjct: 6 KYDFSCELYRMSTYSTFPAGVPVSERSLARAGFYYTG------VNDKVKCFCCGLMLDNW 59
Query: 93 VQGDDPLKDHEKWSPNCWFLRRL 115
GD P++ H++ P+C F++ L
Sbjct: 60 KLGDSPIQKHKQLYPSCSFIQNL 82
>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|C Chain C, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|B Chain B, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
pdb|2QRA|A Chain A, Crystal Structure Of Xiap Bir1 Domain (p21 Form)
Length = 111
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
++++ E +RL +F N + +SA +A AGF + G+ D V+C C +
Sbjct: 30 NKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVD 83
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
+W GD + H K SPNC F+
Sbjct: 84 RWQYGDSAVGRHRKVSPNCRFI 105
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 177 SRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWF 236
+RL++F ++P + TL AGF YTG+ D CF C + W+ D H +
Sbjct: 40 NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 99
Query: 237 SSCPYV 242
+C ++
Sbjct: 100 PNCRFI 105
>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form)
Length = 94
Score = 49.3 bits (116), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
++++ E +RL +F N + +SA +A AGF + G+ D V+C C +
Sbjct: 13 NKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVD 66
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
+W GD + H K SPNC F+
Sbjct: 67 RWQYGDSAVGRHRKVSPNCRFI 88
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 177 SRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWF 236
+RL++F ++P + TL AGF YTG+ D CF C + W+ D H +
Sbjct: 23 NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 237 SSCPYV 242
+C ++
Sbjct: 83 PNCRFI 88
>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex
pdb|2POP|D Chain D, The Crystal Structure Of Tab1 And Bir1 Complex
Length = 95
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
++++ E +RL +F N + +SA +A AGF + G+ D V+C C +
Sbjct: 13 NKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVD 66
Query: 91 KWVQGDDPLKDHEKWSPNCWFL 112
+W GD + H K SPNC F+
Sbjct: 67 RWQYGDSAVGRHRKVSPNCRFI 88
Score = 47.8 bits (112), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 177 SRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWF 236
+RL++F ++P + TL AGF YTG+ D CF C + W+ D H +
Sbjct: 23 NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 237 SSCPYV 242
+C ++
Sbjct: 83 PNCRFI 88
>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIJ|B Chain B, Crystal Structure Of Human Survivin K62yH80W MUTANT IN
COMPLEX WITH SmacDIABLO(1-15) Peptide
pdb|3UIK|A Chain A, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
pdb|3UIK|B Chain B, Crystal Structure Of Human Survivin Mutant K62yH80W IN
COMPLEX WITH H3(1-10) Peptide
Length = 143
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 19 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFYELEGWEPDDDP 74
Query: 99 LKDHEKWSPNCWFL 112
+++H+KWS C FL
Sbjct: 75 IEEHKKWSSGCAFL 88
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 8 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELE 66
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH +W S C ++ + K
Sbjct: 67 GWEPDDDPIEEHKKWSSGCAFLSVKK 92
>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex
Length = 145
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 160 GIHKNSPPAFPNYATY--ESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLC 212
G H +P P + + + R+ +F +WP P + EAGF + + D C
Sbjct: 1 GSHMGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQC 60
Query: 213 FRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVK 246
F C L+ WE DDP EH + S C ++ + K
Sbjct: 61 FFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK 94
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 21 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDP 76
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 77 IEEHKKHSSGCAFL 90
>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|E Chain E, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
pdb|2RAX|X Chain X, Crystal Structure Of Borealin (20-78) Bound To Survivin
(1-120)
Length = 123
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 160 GIHKNSPPAFPNYATY--ESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLC 212
G H +P P + + + R+ +F +WP P + EAGF + + D C
Sbjct: 1 GSHMGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQC 60
Query: 213 FRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVK 246
F C L+ WE DDP EH + S C ++ + K
Sbjct: 61 FFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK 94
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 21 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDP 76
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 77 IEEHKKHSSGCAFL 90
>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEE|C Chain C, Crystal Structure Of Human Survivin K62a Mutant Bound To
N-Terminal Histone H3
pdb|3UEG|A Chain A, Crystal Structure Of Human Survivin K62a Mutant
pdb|3UEG|B Chain B, Crystal Structure Of Human Survivin K62a Mutant
Length = 146
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 11 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELE 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH + S C ++ + K
Sbjct: 70 GWEPDDDPIEEHKKHSSGCAFLSVKK 95
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 22 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFAELEGWEPDDDP 77
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 78 IEEHKKHSSGCAFL 91
>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
pdb|1F3H|B Chain B, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
Length = 142
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 7 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELE 65
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH + S C ++ + K
Sbjct: 66 GWEPDDDPIEEHKKHSSGCAFLSVKK 91
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 18 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDMAQCFFCFKELEGWEPDDDP 73
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 74 IEEHKKHSSGCAFL 87
>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant
pdb|3UEI|B Chain B, Crystal Structure Of Human Survivin E65a Mutant
Length = 146
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 22 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELAGWEPDDDP 77
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 78 IEEHKKHSSGCAFL 91
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L
Sbjct: 11 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELA 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH + S C ++ + K
Sbjct: 70 GWEPDDDPIEEHKKHSSGCAFLSVKK 95
>pdb|1M4M|A Chain A, Mouse Survivin
Length = 140
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W D+P
Sbjct: 18 RIATFKN-WPFLEDCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDNP 73
Query: 99 LKDHEKWSPNCWFL 112
+++H K SP C FL
Sbjct: 74 IEEHRKHSPGCAFL 87
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 178 RLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLKHWEETDDPWTEH 232
R+ +F +WP P + EAGF + + D CF C L+ WE D+P EH
Sbjct: 18 RIATFKNWPFLEDCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDNPIEEH 77
Query: 233 ARWFSSCPYVKLVKGQE 249
+ C ++ + K E
Sbjct: 78 RKHSPGCAFLTVKKQME 94
>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3.
pdb|3UED|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UED|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
Phosphorylated On Threonine-3 (C2 Space Group).
pdb|3UEF|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group).
pdb|3UEF|C Chain C, Crystal Structure Of Human Survivin Bound To Histone H3
(C2 Space Group)
Length = 146
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 11 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH + S C ++ + K
Sbjct: 70 GWEPDDDPIEEHKKHSSGCAFLSVKK 95
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 22 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDP 77
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 78 IEEHKKHSSGCAFL 91
>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens
pdb|1E31|B Chain B, Survivin Dimer H. Sapiens
pdb|2QFA|A Chain A, Crystal Structure Of A Survivin-Borealin-Incenp Core
Complex
pdb|4A0I|A Chain A, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0I|B Chain B, Crystal Structure Of Survivin Bound To The N-Terminal Tail
Of Hsgo1
pdb|4A0J|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0J|B Chain B, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
pdb|4A0N|A Chain A, Crystal Structure Of Survivin Bound To The Phosphorylated
N- Terminal Tail Of Histone H3
Length = 142
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 7 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH + S C ++ + K
Sbjct: 66 GWEPDDDPIEEHKKHSSGCAFLSVKK 91
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 18 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDP 73
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 74 IEEHKKHSSGCAFL 87
>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant
pdb|3UEH|B Chain B, Crystal Structure Of Human Survivin H80a Mutant
Length = 146
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 11 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH + S C ++ + K
Sbjct: 70 GWEPDDDPIEEHKKASSGCAFLSVKK 95
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 22 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDP 77
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 78 IEEHKKASSGCAFL 91
>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|B Chain B, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIH|A Chain A, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UIH|B Chain B, Crystal Structure Of Human Survivin In Complex With
SmacDIABLO(1-15) Peptide
pdb|3UII|A Chain A, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
pdb|3UII|B Chain B, Crystal Structure Of Human Survivin In Complex With
H3(1-10) Peptide
Length = 143
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 8 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 66
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
WE DDP EH + S C ++ + K
Sbjct: 67 GWEPDDDPIEEHKKHSSGCAFLSVKK 92
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 19 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDP 74
Query: 99 LKDHEKWSPNCWFL 112
+++H+K S C FL
Sbjct: 75 IEEHKKHSSGCAFL 88
>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin
pdb|1XOX|B Chain B, Solution Structure Of Human Survivin
Length = 117
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
PPA+ + + R+ +F +WP P + EAGF + + D CF C L+
Sbjct: 7 PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVKGQE 249
WE DDP EH + S C ++ + K E
Sbjct: 66 GWEPDDDPIEEHKKHSSGCAFLSVKKQFE 94
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 42 RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
R+ +FKN WP A ++MA AGF + D +C FC EL W DDP
Sbjct: 18 RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDP 73
Query: 99 LKDHEKWSPNCWFLRRLKKGNTESAG 124
+++H+K S C FL K+ + G
Sbjct: 74 IEEHKKHSSGCAFLSVKKQFEELTLG 99
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
+LCKIC R + +VF+PCGH+V C
Sbjct: 26 KLCKICMDRNIAIVFVPCGHLVTC 49
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
+LCKIC R + +VF+PCGH+V C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTC 48
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
+LCKIC R + +VF+PCGH+V C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTC 48
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
R CK+C +E+ +VF+PCGH+V C
Sbjct: 25 RTCKVCMDKEVSIVFIPCGHLVVC 48
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 36.2 bits (82), Expect = 0.026, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 299 RLCKICYQREMGVVFLPCGHIV 320
R CK+C R + +VF+PCGH+V
Sbjct: 14 RTCKVCLDRAVSIVFVPCGHLV 35
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 297 DGRLCKICYQREMGVVFLPCGHIVAC 322
+ LC +C + E+ F PCGH V C
Sbjct: 17 EAMLCMVCCEEEINSTFCPCGHTVCC 42
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 70 KKENGRFSDDVKCIFCGIELGKWVQGDDPL----------KDHEKWSPNCWFLRRLKKGN 119
K E GR+ D CI C + + +W G P+ + W P R+ K N
Sbjct: 333 KVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEK--FRQTK--N 388
Query: 120 TESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVV---SSLEKLGIHKNSPPAFPNYATYE 176
+S LI+ S SE ++ + V + EK+G H N A P +
Sbjct: 389 KDSV-------LIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEW- 440
Query: 177 SRLRSFDSWPISLRLK 192
S R + I+ LK
Sbjct: 441 SYHRDYRETQITKLLK 456
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 25/136 (18%)
Query: 70 KKENGRFSDDVKCIFCGIELGKWVQGDDPL----------KDHEKWSPNCWFLRRLKKGN 119
K E GR+ D CI C + + +W G P+ + W P R+ K N
Sbjct: 333 KVEQGRYDDIRVCIGCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEK--FRQTK--N 388
Query: 120 TESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVV---SSLEKLGIHKNSPPAFPNYATYE 176
+S LI+ S SE ++ + V + EK+G H N A P +
Sbjct: 389 KDSV-------LIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEW- 440
Query: 177 SRLRSFDSWPISLRLK 192
S R + I+ LK
Sbjct: 441 SYHRDYRETQITKLLK 456
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 199 AGFFYTGKADQTLCFRCGGGLKHWEETDDPW--TEHARWFSSCP--YVKLVKGQEFINQV 254
A F YTG+ Q L FR G L+ E W EH P Y+ L G E QV
Sbjct: 15 ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE--KQV 72
Query: 255 IG 256
+G
Sbjct: 73 VG 74
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 293 EPNSDGRLCKICYQREMGVVFLPCGHIV 320
E S +LCKIC + + V PCGH++
Sbjct: 333 EMGSTFQLCKICAENDKDVKIEPCGHLM 360
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 293 EPNSDGRLCKICYQREMGVVFLPCGHIV 320
E S +LCKIC + + V PCGH++
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLM 356
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 293 EPNSDGRLCKICYQREMGVVFLPCGHIV 320
E S +LCKIC + + V PCGH++
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLM 356
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 293 EPNSDGRLCKICYQREMGVVFLPCGHIV 320
E S +LCKIC + + V PCGH++
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLM 354
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 293 EPNSDGRLCKICYQREMGVVFLPCGHIV 320
E S +LCKIC + + V PCGH++
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLM 354
>pdb|3FE4|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Vi
pdb|3FE4|B Chain B, Crystal Structure Of Human Carbonic Anhydrase Vi
Length = 278
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVKGQ--EFINQVIGH--KEVANDPITLQPL-HYIAE 275
H T P TE+ WF +VKL + Q + N ++ H K + ND QPL H + E
Sbjct: 197 HGSLTTPPCTENVHWFVLADFVKLSRTQVWKLENSLLDHRNKTIHNDYRRTQPLNHRVVE 256
Query: 276 TS 277
++
Sbjct: 257 SN 258
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 293 EPNSDGRLCKICYQREMGVVFLPCGHIVA 321
E S +LCKIC + + V PCGH++
Sbjct: 22 EMGSTFQLCKICAENDKDVKIEPCGHLMC 50
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 293 EPNSDGRLCKICYQREMGVVFLPCGHIVA 321
E S +LCKIC + + V PCGH++
Sbjct: 19 EMGSTFQLCKICAENDKDVKIEPCGHLMC 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,622,344
Number of Sequences: 62578
Number of extensions: 450370
Number of successful extensions: 946
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 128
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)