RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3967
(324 letters)
>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat
domain; Found in inhibitors of apoptosis proteins (IAPs)
and other proteins. In higher eukaryotes, BIR domains
inhibit apoptosis by acting as direct inhibitors of the
caspase family of protease enzymes. In yeast, BIR
domains are involved in regulating cytokinesis. This
novel fold is stabilized by zinc tetrahedrally
coordinated by one histidine and three cysteine residues
and resembles a classical zinc finger.
Length = 69
Score = 101 bits (254), Expect = 2e-27
Identities = 39/69 (56%), Positives = 51/69 (73%)
Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
E+RL++F +WPISL++ P L EAGF+YTG+ D+ CF CG LK+WE DDPW EH RW
Sbjct: 1 EARLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRW 60
Query: 236 FSSCPYVKL 244
+CP+V L
Sbjct: 61 SPNCPFVLL 69
Score = 88.5 bits (220), Expect = 2e-22
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 8/74 (10%)
Query: 41 DRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPL 99
RL +FKN WP++ ++ +++A AGFY+ G+ D+VKC FCG+EL W GDDP
Sbjct: 2 ARLKTFKN-WPISLKVTPEKLAEAGFYYTGRG------DEVKCFFCGLELKNWEPGDDPW 54
Query: 100 KDHEKWSPNCWFLR 113
++H++WSPNC F+
Sbjct: 55 EEHKRWSPNCPFVL 68
>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain. BIR stands for
'Baculovirus Inhibitor of apoptosis protein Repeat'. It
is found repeated in inhibitor of apoptosis proteins
(IAPs), and in fact it is also known as IAP repeat.
These domains characteristically have a number of
invariant residues, including 3 conserved cysteines and
one conserved histidine that coordinate a zinc ion. They
are usually made up of 4-5 alpha helices and a
three-stranded beta-sheet. BIR is also found in other
proteins known as BIR-domain-containing proteins
(BIRPs), such as Survivin.
Length = 69
Score = 100 bits (250), Expect = 7e-27
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 178 RLRSFDSWPISLRLKPVT---LTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHAR 234
RL +F +WPI+L+ + L EAGF+YTG D+ CF CG L +WE DDPW EH R
Sbjct: 1 RLATFKNWPIALKQAKPSPEKLAEAGFYYTGTGDRVRCFYCGLELDNWEPDDDPWEEHKR 60
Query: 235 WFSSCPYVK 243
W +CP+V
Sbjct: 61 WSPNCPFVL 69
Score = 81.9 bits (203), Expect = 5e-20
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 11/76 (14%)
Query: 42 RLDSFKNSWPLTY----LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDD 97
RL +FKN WP+ S +++A AGFY+ G D V+C +CG+EL W DD
Sbjct: 1 RLATFKN-WPIALKQAKPSPEKLAEAGFYYTGTG------DRVRCFYCGLELDNWEPDDD 53
Query: 98 PLKDHEKWSPNCWFLR 113
P ++H++WSPNC F+
Sbjct: 54 PWEEHKRWSPNCPFVL 69
>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein
repeat. Domain found in inhibitor of apoptosis proteins
(IAPs) and other proteins. Acts as a direct inhibitor of
caspase enzymes.
Length = 71
Score = 98.9 bits (247), Expect = 2e-26
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
+ E+RL++F +WP + + P L EAGF+YTG D+ CF CGG L +WE DDPW EH
Sbjct: 1 SEEARLKTFQNWPYNSKCTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHK 60
Query: 234 RWFSSCPYVKL 244
+W +CP+V+
Sbjct: 61 KWSPNCPFVRN 71
Score = 86.2 bits (214), Expect = 2e-21
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 8/74 (10%)
Query: 42 RLDSFKNSWP-LTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLK 100
RL +F+N WP + + +Q+A AGFY+ G D+VKC FCG EL W GDDP +
Sbjct: 5 RLKTFQN-WPYNSKCTPEQLAEAGFYYTGVG------DEVKCFFCGGELDNWEPGDDPWE 57
Query: 101 DHEKWSPNCWFLRR 114
+H+KWSPNC F+R
Sbjct: 58 EHKKWSPNCPFVRN 71
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger).
Length = 49
Score = 42.0 bits (99), Expect = 9e-06
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 297 DGRLCKICYQREMGVVFLPCGHIVAC 322
+ LC IC +R VVFLPCGH+ C
Sbjct: 1 EDDLCVICLERPRNVVFLPCGHLCLC 26
>gnl|CDD|165290 PHA02987, PHA02987, Ig domain OX-2-like protein; Provisional.
Length = 189
Score = 28.3 bits (63), Expect = 4.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 116 KKGNTESAGYDTCGSLIIEPPKSKSE 141
KK N AGY CG +I++ K+K E
Sbjct: 51 KKNNKTIAGYGPCGPVIVDKFKNKIE 76
>gnl|CDD|111665 pfam02792, Mago_nashi, Mago nashi protein. This family was
originally identified in Drosophila and called mago
nashi, it is a strict maternal effect,
grandchildless-like, gene. The human homologue has been
shown to interact with an RNA binding protein. An RNAi
knockout of the C. elegans homologue causes
masculinization of the germ line (Mog phenotype)
hermaphrodites, suggesting it is involved in
hermaphrodite germ-line sex determination. Mago nashi
has been found to be part of the exon-exon junction
complex that binds 20 nucleotides upstream of exon-exon
junctions.
Length = 143
Score = 27.5 bits (61), Expect = 5.2
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 252 NQVIGHKEVANDPITLQPLHYIAETSTAVKPTACSQDDKRPEPNSDGR 299
N + KE+ + L+ + I + S +K D+ PEP+ DG+
Sbjct: 39 NDTLIRKEMFVSELVLKEVKRIVDDSEIIK----EDDENWPEPDKDGK 82
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 28.7 bits (64), Expect = 5.3
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 266 TLQPLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKI 303
+PL ++ DK E N L I
Sbjct: 85 VPKPLKFLRPNY----LDLLEIYDKWLEGNKKRWLADI 118
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 25.5 bits (56), Expect = 5.9
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 297 DGRLCKICYQREMG-VVFLPCGHIV 320
+ C IC VV PCGH+
Sbjct: 1 EELECPICLDLLRDPVVLTPCGHVF 25
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 24.8 bits (54), Expect = 9.6
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 301 CKICYQREMG-VVFLPCGHIV 320
C IC + + V LPCGH
Sbjct: 1 CPICLEEYLKDPVILPCGHTF 21
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain.
Length = 46
Score = 25.0 bits (55), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 301 CKIC---YQREMGVVFLPCGHI 319
C IC ++ VV LPCGH+
Sbjct: 3 CPICLDEFEPGEEVVVLPCGHV 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.438
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,022,468
Number of extensions: 1435762
Number of successful extensions: 958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 18
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)