RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3967
(324 letters)
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger,
apoptosis, cytoplasm, metal-binding, polymorphism, zinc,
zinc-finger, alternative splicing, hydrolase, protease;
1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A*
2uvl_A
Length = 97
Score = 138 bits (350), Expect = 1e-41
Identities = 40/93 (43%), Positives = 60/93 (64%)
Query: 164 NSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWE 223
S + + T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE
Sbjct: 3 GSSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWE 62
Query: 224 ETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
DDPW EHA+WF C ++ +KGQEF++++ G
Sbjct: 63 SGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQG 95
Score = 88.0 bits (218), Expect = 5e-22
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
+M R+ +F WP + + +Q+A+AGFY++G+ DDVKC C L
Sbjct: 7 SNLSMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFCCDGGLR 59
Query: 91 KWVQGDDPLKDHEKWSPNCWFLRRLK 116
W GDDP +H KW P C FL R+K
Sbjct: 60 CWESGDDPWVEHAKWFPRCEFLIRMK 85
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A
1jd6_A 1q4q_A
Length = 124
Score = 139 bits (351), Expect = 3e-41
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 160 GIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGL 219
N P +P YA +RLR+F++WP +L+ KP L EAGFFYTG D+ CF CGGGL
Sbjct: 11 AASGNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGL 70
Query: 220 KHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
W + D+PW +HA W S C +VKL+KGQ +I+ V
Sbjct: 71 MDWNDNDEPWEQHALWLSQCRFVKLMKGQLYIDTVAA 107
Score = 84.3 bits (208), Expect = 2e-20
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
+ +E RL +F+ WP Q+A AGF++ G D V+C CG L
Sbjct: 19 QYPEYAIETARLRTFEA-WPRNLKQKPHQLAEAGFFYTGVG------DRVRCFSCGGGLM 71
Query: 91 KWVQGDDPLKDHEKWSPNCWFLRRLK 116
W D+P + H W C F++ +K
Sbjct: 72 DWNDNDEPWEQHALWLSQCRFVKLMK 97
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide
complex, apoptosis inhibition, peptidomimetic, small
molecule, drug design, inhibitor/apoptosis complex; HET:
BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A*
3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A*
1oxn_A* 1oxq_A* 1oy7_A*
Length = 133
Score = 138 bits (349), Expect = 7e-41
Identities = 49/117 (41%), Positives = 64/117 (54%)
Query: 138 SKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLT 197
S EV + E G + PAFP + E RL SF WP++ + P L
Sbjct: 11 SSGEVPRGSHMLETEEEEEEGAGATLSRGPAFPGMGSEELRLASFYDWPLTAEVPPELLA 70
Query: 198 EAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
AGFF+TG D+ CF C GGL+ W+ DDPWTEHA+WF C ++ KGQE+IN +
Sbjct: 71 AAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINNI 127
Score = 85.9 bits (212), Expect = 7e-21
Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 11 HLPPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLG 69
H+ T + L + M E RL SF + WPLT + + +AAAGF+ G
Sbjct: 20 HMLETEEEEEEGAGATLSRGPAFPGMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTG 78
Query: 70 KKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLK 116
+ D V+C FC L W +GDDP +H KW P C FL R K
Sbjct: 79 HQ------DKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSK 119
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif,
apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB:
3oz1_A*
Length = 122
Score = 137 bits (346), Expect = 1e-40
Identities = 40/101 (39%), Positives = 61/101 (60%)
Query: 156 LEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRC 215
+E + + T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C
Sbjct: 1 MENSLETLRFSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCC 60
Query: 216 GGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
GGL+ WE DDPW EHA+WF C ++ +KGQEF++++ G
Sbjct: 61 DGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQG 101
Score = 87.4 bits (216), Expect = 1e-21
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
+M R+ +F WP + + +Q+A+AGFY++G+ DDVKC C L
Sbjct: 13 SNLSMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFCCDGGLR 65
Query: 91 KWVQGDDPLKDHEKWSPNCWFLRRLK 116
W GDDP +H KW P C FL R+K
Sbjct: 66 CWESGDDPWVEHAKWFPRCEFLIRMK 91
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo
sapiens}
Length = 106
Score = 134 bits (339), Expect = 9e-40
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 166 PPAFPNYATYESRLRSFDSWPISLR-LKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEE 224
Y E+RL SF +WP ++ + P L+EAGF +TGK D CF CGG L +WEE
Sbjct: 12 RGGKMRYQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEE 71
Query: 225 TDDPWTEHARWFSSCPYVKLVKGQEFINQVI 255
DDPW EHA+WF C +++ K E I Q I
Sbjct: 72 GDDPWKEHAKWFPKCEFLRSKKSSEEITQYI 102
Score = 89.2 bits (221), Expect = 2e-22
Identities = 38/88 (43%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 32 RKQNMTLECDRLDSFKNSWPLTY--LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIEL 89
K E RL SF+N WP +S ++ AGF F GK+ D V+C CG L
Sbjct: 14 GKMRYQEEEARLASFRN-WPFYVQGISPCVLSEAGFVFTGKQ------DTVQCFSCGGCL 66
Query: 90 GKWVQGDDPLKDHEKWSPNCWFLRRLKK 117
G W +GDDP K+H KW P C FLR K
Sbjct: 67 GNWEEGDDPWKEHAKWFPKCEFLRSKKS 94
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small
molecule drug discovery, structur drug design, ligase,
metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB:
1nw9_A 2vsl_A
Length = 95
Score = 131 bits (331), Expect = 1e-38
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 6 PRNPSMADYEARIFTFGTWIYSV--NKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 63
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 64 DPWEQHAKWYPGCKYLLEQKGQEYINNI 91
Score = 86.0 bits (213), Expect = 2e-21
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
+M R+ +F W + ++ +Q+A AGFY LG+ D VKC CG L W
Sbjct: 10 SMADYEARIFTFGT-WIYS-VNKEQLARAGFYALGEG------DKVKCFHCGGGLTDWKP 61
Query: 95 GDDPLKDHEKWSPNCWFLRRLK 116
+DP + H KW P C +L K
Sbjct: 62 SEDPWEQHAKWYPGCKYLLEQK 83
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle,
zinc-binding domain, apoptosis/apoptosis inhibitor
complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB:
3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A*
3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Length = 121
Score = 129 bits (326), Expect = 1e-37
Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 162 HKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKH 221
+ + P P+ A YE+R+ +F +W S+ L AGF+ G+ D+ CF CGGGL
Sbjct: 15 NSTNLPRNPSMADYEARIFTFGTWIYSV--NKEQLARAGFYALGEGDKVKCFHCGGGLTD 72
Query: 222 WEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPIT 266
W+ ++DPW +HA+W+ C Y+ KGQE+IN + + +
Sbjct: 73 WKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVR 117
Score = 83.9 bits (207), Expect = 3e-20
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 17 MNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRF 76
++ +R+ + M R+ +F W + ++ +Q+A AGFY LG+
Sbjct: 7 VSSDRNFPNSTNLPRNPS-MADYEARIFTFGT-WIYS-VNKEQLARAGFYALGEG----- 58
Query: 77 SDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLK 116
D VKC CG L W +DP + H KW P C +L K
Sbjct: 59 -DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQK 97
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling
protein/apoptosis complex; 1.80A {Homo sapiens} PDB:
2pop_B
Length = 94
Score = 114 bits (288), Expect = 2e-32
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 164 NSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWE 223
+ +RL++F ++P + TL AGF YTG+ D CF C + W+
Sbjct: 10 ADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQ 69
Query: 224 ETDDPWTEHARWFSSCPYVK 243
D H + +C ++
Sbjct: 70 YGDSAVGRHRKVSPNCRFIN 89
Score = 88.8 bits (220), Expect = 2e-22
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 19 DNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLT-YLSAKQMAAAGFYFLGKKENGRFS 77
+ T D +++ E +RL +F N +P +SA +A AGF + G+
Sbjct: 2 SHMKTCVPADIN-KEEEFVEEFNRLKTFAN-FPSGSPVSASTLARAGFLYTGEG------ 53
Query: 78 DDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLK 116
D V+C C + +W GD + H K SPNC F+
Sbjct: 54 DTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFY 92
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis,
cytoplasm, polymorphism, zinc, zinc-FIN metal binding
protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Length = 85
Score = 114 bits (287), Expect = 3e-32
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
+ +++ R+ ++ ++P + + +L AGF+YTG D+ CF CG L +W+ D
Sbjct: 4 GSKYDFSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGD 63
Query: 227 DPWTEHARWFSSCPYVKLVK 246
P +H + + SC +++ +
Sbjct: 64 SPIQKHKQLYPSCSFIQNLV 83
Score = 87.6 bits (217), Expect = 5e-22
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 33 KQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGK 91
K + + E R+ ++ +P +S + +A AGFY+ G D VKC CG+ L
Sbjct: 6 KYDFSCELYRMSTYST-FPAGVPVSERSLARAGFYYTGVN------DKVKCFCCGLMLDN 58
Query: 92 WVQGDDPLKDHEKWSPNCWFLRRLK 116
W GD P++ H++ P+C F++ L
Sbjct: 59 WKLGDSPIQKHKQLYPSCSFIQNLV 83
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4;
protease-inhibitor, apoptosis-hydrolase complex; 2.40A
{Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Length = 141
Score = 115 bits (288), Expect = 9e-32
Identities = 38/110 (34%), Positives = 55/110 (50%)
Query: 140 SEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEA 199
+ S + + ++ + + + I P P + E+RL+SF +WP L P L A
Sbjct: 9 ALDRPSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASA 68
Query: 200 GFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQE 249
G +YTG DQ CF CGG LK+WE D W+EH R F +C +V
Sbjct: 69 GLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNLNI 118
Score = 80.9 bits (199), Expect = 6e-19
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 17 MNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRF 76
+ + R M E RL SF+N +L+ +++A+AG Y+ G
Sbjct: 22 LRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIG----- 76
Query: 77 SDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESA 123
D V+C CG +L W D +H + PNC+F+ +
Sbjct: 77 -DQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNLNIRSES 122
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor;
apoptosis, signaling protein, zinc binding; 2.50A {Homo
sapiens}
Length = 111
Score = 113 bits (284), Expect = 1e-31
Identities = 21/98 (21%), Positives = 35/98 (35%)
Query: 146 CSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTG 205
V + +RL++F ++P + TL AGF YTG
Sbjct: 9 HHSSGLVPRGSHMKTCVPADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTG 68
Query: 206 KADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK 243
+ D CF C + W+ D H + +C ++
Sbjct: 69 EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFIN 106
Score = 89.3 bits (221), Expect = 2e-22
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 13 PPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKE 72
+ T D +++ E +RL +F N + +SA +A AGF + G+
Sbjct: 13 GLVPRGSHMKTCVPADIN-KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEG- 70
Query: 73 NGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRL 115
D V+C C + +W GD + H K SPNC F+
Sbjct: 71 -----DTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGF 108
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle,
long helix, protein complex, alternative splicing,
apoptosis, cell cycle, cell division; HET: MES; 1.40A
{Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A
4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A*
3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A*
3uik_A 3uij_A 1m4m_A 2rax_A ...
Length = 142
Score = 113 bits (283), Expect = 4e-31
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 164 NSPPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFYTGKA---DQTLCFRCGGG 218
+ P + R+ +F +WP P + EAGF + D CF C
Sbjct: 4 PTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKE 63
Query: 219 LKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQ 253
L+ WE DDP EH + S C ++ + K E +
Sbjct: 64 LEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTL 98
Score = 88.6 bits (219), Expect = 7e-22
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 35 NMTLECDRLDSFKNSWPLT---YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGK 91
L+ R+ +FKN WP + ++MA AGF + D +C FC EL
Sbjct: 11 QPFLKDHRISTFKN-WPFLEGCACTPERMAEAGFIHCPTENEP---DLAQCFFCFKELEG 66
Query: 92 WVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
W DDP+++H+K S C FL +KK E + L ++ ++K+++++ + +
Sbjct: 67 WEPDDDPIEEHKKHSSGCAFL-SVKKQFEELTLGE---FLKLDRERAKNKIAKETNNKKK 122
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila
melanogaster}
Length = 136
Score = 112 bits (282), Expect = 6e-31
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 142 VSQSCSQPNQVV---SSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTE 198
++ V ++ +L + + + E+RL++F WP+ L L +
Sbjct: 1 MASVVPIAFDQVDNNTNATQLFKNNINKTRMNDLNREETRLKTFTDWPLD-WLDKRQLAQ 59
Query: 199 AGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQ 248
G ++T D+ CF CG + WE+ D P EH RW +CP ++
Sbjct: 60 TGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTTN 109
Score = 97.8 bits (243), Expect = 3e-25
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 14 PTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKEN 73
N N + ++K R ++ E RL +F + WPL +L +Q+A G YF
Sbjct: 13 DNNTNATQLFKNNINKT-RMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHAG-- 68
Query: 74 GRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGN 119
D VKC FCG+E+G W Q D P+ +H++WSPNC LRR N
Sbjct: 69 ----DKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTTNN 110
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A
{Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A
3sip_E
Length = 116
Score = 108 bits (271), Expect = 1e-29
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEE 224
+ + E+RL++F WP+ L L + G ++T D+ CF CG + WE+
Sbjct: 5 NKTRMNDLNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQ 63
Query: 225 TDDPWTEHARWFSSCPYVKLVKGQ 248
D P EH RW +CP ++
Sbjct: 64 EDQPVPEHQRWSPNCPLLRRRTTN 87
Score = 98.5 bits (245), Expect = 7e-26
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 18/110 (16%)
Query: 31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
+R ++ E RL +F + WPL +L +Q+A G YF D VKC FCG+E+G
Sbjct: 7 TRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHAG------DKVKCFFCGVEIG 59
Query: 91 KWVQGDDPLKDHEKWSPNCWFLRRLKKGN-----------TESAGYDTCG 129
W Q D P+ +H++WSPNC LRR N YD CG
Sbjct: 60 SWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPINAEALDRILPPISYDICG 109
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 113 bits (282), Expect = 5e-29
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 171 NYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWT 230
+ T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE DDPW
Sbjct: 2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61
Query: 231 EHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQP 269
EHA+WF C ++ +KGQEF++++ G + + P
Sbjct: 62 EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTP 100
Score = 105 bits (260), Expect = 5e-26
Identities = 61/338 (18%), Positives = 107/338 (31%), Gaps = 70/338 (20%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
+M R+ +F WP + + +Q+A+AGFY++G+ DDVKC C L W
Sbjct: 2 SMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFSCDGGLRCWE 54
Query: 94 QGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVV 153
GDDP +H KW P C FL R+K G + + P ++ + +
Sbjct: 55 SGDDPWVEHAKWFPRCEFLIRMK-------GQEFVDEIQGRYPHLLEQLLSTPPIIHYGP 107
Query: 154 SSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCF 213
+ N +S L + + + + G Y D
Sbjct: 108 GE------SSSEDAVMMNTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSAL 161
Query: 214 RCGGGLKHWEETDDPW--------------------------------------TEHARW 235
K EE + +
Sbjct: 162 LNAEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHD 221
Query: 236 FSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAVK-----------PTA 284
++ +E I+ ++ A + + + +
Sbjct: 222 IIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVS 281
Query: 285 CSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
+++ + R CK+C +E+ VVF+PCGH+V C
Sbjct: 282 GLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVC 319
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 49.8 bits (119), Expect = 2e-08
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 276 TSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
+ ++ +++ + +LCKIC R + +VF+PCGH+V C
Sbjct: 3 SGSSGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTC 49
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 49.0 bits (117), Expect = 4e-08
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 296 SDGRLCKICYQREMGVVFLPCGHIVAC 322
+ LC +C + E+ F PCGH V C
Sbjct: 16 KEAMLCMVCCEEEINSTFCPCGHTVCC 42
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 48.6 bits (116), Expect = 4e-08
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 286 SQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
S + + C +C + V LPC H C
Sbjct: 3 SGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLC 39
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 39.4 bits (92), Expect = 6e-05
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 293 EPNSDGRLCKICYQREMGVVFLP--CGHIVAC 322
P + C IC R + GH++AC
Sbjct: 3 LPLNAIEPCVICQGRPKNGCIVHGKTGHLMAC 34
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 37.5 bits (87), Expect = 3e-04
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 295 NSDGRLCKICY--QREMGVVFLPCGHIVAC 322
+ + C +C R+ ++ GH+V C
Sbjct: 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTC 33
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 36.3 bits (83), Expect = 0.012
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 287 QDDKRPEPNSDGRLCKICYQREMGVVFLPCGHI 319
Q + E S +LCKIC + + V PCGH+
Sbjct: 321 QYELYCEMGSTFQLCKICAENDKDVKIEPCGHL 353
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.15
Identities = 44/299 (14%), Positives = 77/299 (25%), Gaps = 102/299 (34%)
Query: 40 CDRL-DSFKNSWPLTY--------------LSAKQMAAAGFYFLG-------KKENGRFS 77
+L + F P L K FLG + G+F
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--------FLGYVSSLVEPSKVGQFD 81
Query: 78 DDVKCIFCGIELGKWVQGDDP-------LKDHEKWSPNCWFLRRLKKGNTESAGYDTCGS 130
+ E +++G+D L++++ +K
Sbjct: 82 QVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDT--------TLVKTKELIKNYITARIM 132
Query: 131 LIIEPPK-SKSEVSQSCSQPN---------QVVSSLEKLGIHKNSPPAFPN----YATYE 176
K S S + ++ + N Q G N+ F Y TY
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ--------G---NTDDYFEELRDLYQTYH 181
Query: 177 SRLRSFDSWPISLRLKPV--TLTEAGFFYTGKADQTLCFRCGGGLKHWEET-----DDPW 229
+ + L + T +A +T + + W E D +
Sbjct: 182 VLVGDLIK-FSAETLSELIRTTLDAEKVFTQGLN----------ILEWLENPSNTPDKDY 230
Query: 230 TEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAVKPTACSQD 288
SCP + ++ Q + H V + P + A T SQ
Sbjct: 231 LLSI--PISCPLIGVI--Q------LAHYVVTAKLLGFTPGELRSYLKGA---TGHSQG 276
Score = 32.7 bits (74), Expect = 0.17
Identities = 38/236 (16%), Positives = 67/236 (28%), Gaps = 71/236 (30%)
Query: 48 NSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKC--IFCGIELGKWVQGDDPLKDHEKW 105
+SW ++S ++ F F+G V+C + L + D ++ +
Sbjct: 287 DSWESFFVSVRKAITVLF-FIG----------VRCYEAYPNTSLPPSILEDS--LENNEG 333
Query: 106 SPNCWF-LRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVS----SLEKLG 160
P+ + L + + T L P + E+S N VVS SL L
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHL---PAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 161 --IHKNSPPAFPN--YATYESRLRSFDSW--PISLR-----LKPVT------LTEAGF-- 201
+ K P+ + + R F + P++ L P + L +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 202 -----------FYTGK-------------ADQTLCFRCGGGLKHWEETDDPWTEHA 233
+ G D + WE T H
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV-----KWETTTQFKATHI 501
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.82
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 151 QVVSSLE-KLGIHK-NSPPAFPNYATYE 176
Q + L+ L ++ +S PA AT E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 28.7 bits (63), Expect = 3.1
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAV 280
+ DDP+ W P + + QE + + ++ + + P I
Sbjct: 162 IYGPKDDPYHSAPNWRLPYPDKEAAQLQELVA--VANENEVDFVWAIHPGQDIKWNKEDR 219
Query: 281 K 281
Sbjct: 220 D 220
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 25.3 bits (56), Expect = 6.0
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 295 NSDGRLCKICY----QREMGVVFLPCGHI--VACV 323
+S C IC + LPCGH+ C
Sbjct: 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCY 36
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease,
lincl, zymogen, P exopeptidase, endopeptidase, S53
family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB:
3ee6_A*
Length = 544
Score = 27.2 bits (59), Expect = 8.5
Identities = 15/83 (18%), Positives = 22/83 (26%)
Query: 181 SFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCP 240
S+ SL + TL F G + +S P
Sbjct: 305 SYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASSP 364
Query: 241 YVKLVKGQEFINQVIGHKEVAND 263
YV V G F + E+ +
Sbjct: 365 YVTTVGGTSFQEPFLITNEIVDY 387
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 25.2 bits (55), Expect = 9.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 294 PNSDGRLCKICYQREMGVVFLPCGHI 319
P+ C IC Q + V LPC H+
Sbjct: 11 PSLTVPECAICLQTCVHPVSLPCKHV 36
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 26.9 bits (58), Expect = 9.6
Identities = 10/97 (10%), Positives = 20/97 (20%)
Query: 133 IEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLK 192
+E S + ++ + E + P A S + P +
Sbjct: 178 VEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGP 237
Query: 193 PVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPW 229
L G +K +
Sbjct: 238 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQ 274
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.438
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,932,673
Number of extensions: 274613
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 54
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)