RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3967
(324 letters)
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP,
livin) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 133 bits (336), Expect = 5e-40
Identities = 44/88 (50%), Positives = 57/88 (64%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
PAFP + E RL SF WP++ + P L AGFF+TG D+ CF C GGL+ W+ D
Sbjct: 2 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 61
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPWTEHA+WF C ++ KGQE+IN +
Sbjct: 62 DPWTEHAKWFPGCQFLLRSKGQEYINNI 89
Score = 86.8 bits (215), Expect = 3e-22
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
M E RL SF + WPLT + + +AAAGF+ G + D V+C FC L W
Sbjct: 6 GMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGHQ------DKVRCFFCYGGLQSWK 58
Query: 94 QGDDPLKDHEKWSPNCWFLRRLKK 117
+GDDP +H KW P C FL R K
Sbjct: 59 RGDDPWTEHAKWFPGCQFLLRSKG 82
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 105
Score = 133 bits (337), Expect = 6e-40
Identities = 47/89 (52%), Positives = 62/89 (69%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P +P YA +RLR+F++WP +L+ KP L EAGFFYTG D+ CF CGGGL W + D
Sbjct: 5 PQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDND 64
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQVI 255
+PW +HA W S C +VKL+KGQ +I+ V
Sbjct: 65 EPWEQHALWLSQCRFVKLMKGQLYIDTVA 93
Score = 86.1 bits (213), Expect = 1e-21
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
+ +E RL +F+ WP Q+A AGF++ G D V+C CG L
Sbjct: 6 QYPEYAIETARLRTFEA-WPRNLKQKPHQLAEAGFFYTGVG------DRVRCFSCGGGLM 58
Query: 91 KWVQGDDPLKDHEKWSPNCWFLRRLK 116
W D+P + H W C F++ +K
Sbjct: 59 DWNDNDEPWEQHALWLSQCRFVKLMK 84
>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 128 bits (323), Expect = 7e-38
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P+ A YE+R+ +F +W S+ L AGF+ G+ D+ CF CGGGL W+ ++
Sbjct: 8 PRNPSMADYEARIFTFGTWIYSV--NKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 65
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
DPW +HA+W+ C Y+ KGQE+IN +
Sbjct: 66 DPWEQHAKWYPGCKYLLEQKGQEYINNI 93
Score = 85.3 bits (211), Expect = 1e-21
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 35 NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
+M R+ +F W + ++ +Q+A AGFY LG+ D VKC CG L W
Sbjct: 12 SMADYEARIFTFGT-WIYS-VNKEQLARAGFYALGEG------DKVKCFHCGGGLTDWKP 63
Query: 95 GDDPLKDHEKWSPNCWFLRRLK 116
+DP + H KW P C +L K
Sbjct: 64 SEDPWEQHAKWYPGCKYLLEQK 85
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 122 bits (308), Expect = 9e-36
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
T+ +R+R+F WP S+ ++P L AGF+Y G+ D CF C GGL+ WE DDPW EHA
Sbjct: 3 THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 62
Query: 234 RWFSSCPYVKLVKGQEFINQV 254
+WF C ++ +KGQEF++++
Sbjct: 63 KWFPRCEFLIRMKGQEFVDEI 83
Score = 82.6 bits (204), Expect = 1e-20
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 36 MTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
M R+ +F WP + + +Q+A+AGFY++G+ DDVKC C L W
Sbjct: 1 MQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFCCDGGLRCWES 53
Query: 95 GDDPLKDHEKWSPNCWFLRRLK 116
GDDP +H KW P C FL R+K
Sbjct: 54 GDDPWVEHAKWFPRCEFLIRMK 75
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 115 bits (289), Expect = 8e-33
Identities = 36/76 (47%), Positives = 45/76 (59%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
P P + E+RL+SF +WP L P L AG +YTG DQ CF CGG LK+WE D
Sbjct: 29 PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 88
Query: 227 DPWTEHARWFSSCPYV 242
W+EH R F +C +V
Sbjct: 89 RAWSEHRRHFPNCFFV 104
Score = 83.8 bits (207), Expect = 9e-21
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 35 NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
M E RL SF+N +L+ +++A+AG Y+ G D V+C CG +L W
Sbjct: 33 AMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIG------DQVQCFACGGKLKNWEP 86
Query: 95 GDDPLKDHEKWSPNCWFLR 113
GD +H + PNC+F+
Sbjct: 87 GDRAWSEHRRHFPNCFFVL 105
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 108 bits (271), Expect = 8e-30
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 167 PAFPNYATYESRLRSFDSWPIS--LRLKPVTLTEAGFFYTGKA---DQTLCFRCGGGLKH 221
P + R+ +F +WP P + EAGF + D CF C L+
Sbjct: 3 PPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEG 62
Query: 222 WEETDDPWTEHARWFSSCPYVKLVKGQEFIN 252
WE DDP EH + S C ++ + K E +
Sbjct: 63 WEPDDDPIEEHKKHSSGCAFLSVKKQFEELT 93
Score = 89.3 bits (221), Expect = 1e-22
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 36 MTLECDRLDSFKNSWPLT---YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKW 92
L+ R+ +FKN WP + ++MA AGF + D +C FC EL W
Sbjct: 8 PFLKDHRISTFKN-WPFLEGCACTPERMAEAGFIHCPTENEP---DLAQCFFCFKELEGW 63
Query: 93 VQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQ 148
DDP+++H+K S C FL +KK E + L ++ ++K+++++ +
Sbjct: 64 EPDDDPIEEHKKHSSGCAFL-SVKKQFEELTLGE---FLKLDRERAKNKIAKETNN 115
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 97
Score = 102 bits (256), Expect = 4e-28
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 171 NYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWT 230
+ E+RL++F WP+ L L + G ++T D+ CF CG + WE+ D P
Sbjct: 2 DLNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 60
Query: 231 EHARWFSSCPYVK 243
EH RW +CP ++
Sbjct: 61 EHQRWSPNCPLLR 73
Score = 92.6 bits (230), Expect = 2e-24
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 35 NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
++ E RL +F + WPL +L +Q+A G YF D VKC FCG+E+G W Q
Sbjct: 2 DLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHAG------DKVKCFFCGVEIGSWEQ 54
Query: 95 GDDPLKDHEKWSPNCWFLRRLKKGN 119
D P+ +H++WSPNC LRR N
Sbjct: 55 EDQPVPEHQRWSPNCPLLRRRTTNN 79
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 33.4 bits (76), Expect = 0.004
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 287 QDDKRPEPNSDGRLCKICYQREMGVVFLPCGHI 319
Q + E S +LCKIC + + V PCGH+
Sbjct: 12 QYELYCEMGSTFQLCKICAENDKDVKIEPCGHL 44
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 27.1 bits (60), Expect = 0.62
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 194 VTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHAR-------WFSSCPYVKLVK 246
VT A + Y + + L F+ G L+ T+ W + S YV
Sbjct: 2 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSN-YVAPSD 60
Query: 247 GQE 249
+
Sbjct: 61 SIQ 63
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 26.4 bits (58), Expect = 0.76
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 301 CKICYQREMGVVFLPCGHI 319
C+ C LPC H
Sbjct: 9 CQQCQAEAKCPKLLPCLHT 27
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 26.0 bits (57), Expect = 0.97
Identities = 8/44 (18%), Positives = 12/44 (27%)
Query: 199 AGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
A + Y Q L RC + ++ W Y
Sbjct: 3 ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYA 46
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 26.4 bits (58), Expect = 1.8
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 192 KPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHAR-----WFSSCPYVKLVK 246
PV A + Y + L F G + + D W + F S YVK+
Sbjct: 32 HPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSN-YVKMTT 90
Query: 247 GQE 249
Sbjct: 91 DSS 93
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 25.4 bits (55), Expect = 4.8
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 301 CKICYQREMGVVFLPCGHI 319
C IC + V C HI
Sbjct: 24 CPICLELIKEPVSTKCDHI 42
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 24.5 bits (53), Expect = 5.2
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 301 CKICYQR-EMGVVFLPCGHI 319
C IC + + LPC H
Sbjct: 8 CPICLEDPSNYSMALPCLHA 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.438
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,259,249
Number of extensions: 57434
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 25
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)