BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3968
(1080 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/440 (51%), Positives = 298/440 (67%), Gaps = 4/440 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 42 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 101
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + E A EF + G P++ K
Sbjct: 102 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 161
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A + ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 162 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 221
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 222 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 281
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGLTQEK-ISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L E+ + Q+K I+ G
Sbjct: 282 -SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 340
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 400
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + KM R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 401 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 460
Query: 420 PTKNRAQKLLNYLGTVLVNG 439
P+ +R K L Y+G V +NG
Sbjct: 461 PSLDRGTKTLEYIGNVTING 480
Score = 233 bits (593), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 184/322 (57%), Gaps = 6/322 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP+AA LIG ++ SG G+ + SM
Sbjct: 713 DMAGLLKPKAAYELIGELK-SAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 771
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE + +KS N ++
Sbjct: 772 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFE--SDIKSPNTEI 829
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KV PSSKVVGD A +M
Sbjct: 830 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYM 889
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 890 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 949
Query: 710 LPPFDFGKLKTEL-QERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L +E+ T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 950 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1009
Query: 769 PKVGEEFEVKIQPPQGFRQILK 790
+ GE E++I +G R I+K
Sbjct: 1010 MRNGETVEIEID--KGKRLIIK 1029
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%)
Query: 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPF 837
KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLATRVR+ D++ I+
Sbjct: 504 KIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASK 563
Query: 838 VAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTN 897
A F + +SLE WGGATFDVA FL E PWERLE +RK IPN+ FQMLLR +NAVGY N
Sbjct: 564 TADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKN 623
Query: 898 YPDNEMH 904
YPDN +H
Sbjct: 624 YPDNVIH 630
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + +
Sbjct: 611 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 670
Query: 1029 XXXISYTGDVSDPSKKK-YDLKYYQNLADELVKAGTHVLCIK 1069
I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 671 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 712
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV+K
Sbjct: 1067 NVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK 1126
Query: 964 SI 965
+
Sbjct: 1127 QV 1128
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/440 (51%), Positives = 298/440 (67%), Gaps = 4/440 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 42 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 101
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + E A EF + G P++ K
Sbjct: 102 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 161
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A + ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 162 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 221
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 222 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 281
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGLTQEK-ISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L E+ + Q+K I+ G
Sbjct: 282 -SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 340
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 400
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + KM R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 401 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 460
Query: 420 PTKNRAQKLLNYLGTVLVNG 439
P+ +R K L Y+G V +NG
Sbjct: 461 PSLDRGTKTLEYIGNVTING 480
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 185/322 (57%), Gaps = 6/322 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP+AA LIG ++ SG G+ + SM
Sbjct: 713 DMAGLLKPKAAYELIGELK-SAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 771
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE + +KS N ++
Sbjct: 772 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFE--SDIKSPNTEI 829
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KVTPSSKVVGD A +M
Sbjct: 830 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYM 889
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 890 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 949
Query: 710 LPPFDFGKLKTEL-QERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L +E+ T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 950 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1009
Query: 769 PKVGEEFEVKIQPPQGFRQILK 790
+ GE E++I +G R I+K
Sbjct: 1010 MRNGETVEIEID--KGKRLIIK 1029
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 91/127 (71%)
Query: 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPF 837
KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLATRVR+ D++ I+
Sbjct: 504 KIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASK 563
Query: 838 VAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTN 897
A F + +SLE WGG TFDVA FL E PWERLE +RK IPN+ FQMLLR +NAVGY N
Sbjct: 564 TADVFKDGFSLEMWGGTTFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKN 623
Query: 898 YPDNEMH 904
YPDN +H
Sbjct: 624 YPDNVIH 630
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + +
Sbjct: 611 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 670
Query: 1029 XXXISYTGDVSDPSKKK-YDLKYYQNLADELVKAGTHVLCIK 1069
I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 671 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 712
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV+K
Sbjct: 1067 NVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK 1126
Query: 964 SI 965
+
Sbjct: 1127 QV 1128
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/440 (51%), Positives = 298/440 (67%), Gaps = 4/440 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 65 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 124
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + E A EF + G P++ K
Sbjct: 125 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 184
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A + ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 185 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 244
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 245 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 304
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGLTQEK-ISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L E+ + Q+K I+ G
Sbjct: 305 -SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 363
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 364 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 423
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + KM R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 424 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 483
Query: 420 PTKNRAQKLLNYLGTVLVNG 439
P+ +R K L Y+G V +NG
Sbjct: 484 PSLDRGTKTLEYIGNVTING 503
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 185/322 (57%), Gaps = 6/322 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP+AA LIG ++ SG G+ + SM
Sbjct: 736 DMAGLLKPKAAYELIGELK-SAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 794
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE + +KS N ++
Sbjct: 795 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFE--SDIKSPNTEI 852
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KVTPSSKVVGD A +M
Sbjct: 853 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYM 912
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 913 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 972
Query: 710 LPPFDFGKLKTEL-QERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L +E+ T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 973 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1032
Query: 769 PKVGEEFEVKIQPPQGFRQILK 790
+ GE E++I +G R I+K
Sbjct: 1033 MRNGETVEIEID--KGKRLIIK 1052
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%)
Query: 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPF 837
KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLATRVR+ D++ I+
Sbjct: 527 KIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASK 586
Query: 838 VAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTN 897
A F + +SLE WGGATFDVA FL E PWERLE +RK IPN+ FQMLLR +NAVGY N
Sbjct: 587 TADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKN 646
Query: 898 YPDNEMH 904
YPDN +H
Sbjct: 647 YPDNVIH 653
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + +
Sbjct: 634 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 693
Query: 1029 XXXISYTGDVSDPSKKK-YDLKYYQNLADELVKAGTHVLCIK 1069
I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 694 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 735
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV+K
Sbjct: 1090 NVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK 1149
Query: 964 SI 965
+
Sbjct: 1150 QV 1151
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/440 (51%), Positives = 298/440 (67%), Gaps = 4/440 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 42 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 101
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + E A EF + G P++ K
Sbjct: 102 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 161
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A + ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 162 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 221
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 222 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 281
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGLTQEK-ISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L E+ + Q+K I+ G
Sbjct: 282 -SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 340
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 400
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + KM R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 401 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 460
Query: 420 PTKNRAQKLLNYLGTVLVNG 439
P+ +R K L Y+G V +NG
Sbjct: 461 PSLDRGTKTLEYIGNVTING 480
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 185/322 (57%), Gaps = 6/322 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP+AA LIG ++ SG G+ + SM
Sbjct: 713 DMAGLLKPKAAYELIGELK-SAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 771
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE + +KS N ++
Sbjct: 772 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFE--SDIKSPNTEI 829
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KVTPSSKVVGD A +M
Sbjct: 830 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYM 889
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 890 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 949
Query: 710 LPPFDFGKLKTEL-QERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L +E+ T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 950 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1009
Query: 769 PKVGEEFEVKIQPPQGFRQILK 790
+ GE E++I +G R I+K
Sbjct: 1010 MRNGETVEIEID--KGKRLIIK 1029
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%)
Query: 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPF 837
KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLATRVR+ D++ I+
Sbjct: 504 KIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASK 563
Query: 838 VAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTN 897
A F + +SLE WGGATFDVA FL E PWERLE +RK IPN+ FQMLLR +NAVGY N
Sbjct: 564 TADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKN 623
Query: 898 YPDNEMH 904
YPDN +H
Sbjct: 624 YPDNVIH 630
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + +
Sbjct: 611 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 670
Query: 1029 XXXISYTGDVSDPSKKK-YDLKYYQNLADELVKAGTHVLCIK 1069
I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 671 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 712
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV+K
Sbjct: 1067 NVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK 1126
Query: 964 SI 965
+
Sbjct: 1127 QV 1128
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/440 (51%), Positives = 298/440 (67%), Gaps = 4/440 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 65 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 124
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + E A EF + G P++ K
Sbjct: 125 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 184
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A + ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 185 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 244
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 245 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 304
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGLTQEK-ISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L E+ + Q+K I+ G
Sbjct: 305 -SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 363
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 364 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 423
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + KM R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 424 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 483
Query: 420 PTKNRAQKLLNYLGTVLVNG 439
P+ +R K L Y+G V +NG
Sbjct: 484 PSLDRGTKTLEYIGNVTING 503
Score = 234 bits (598), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 185/322 (57%), Gaps = 6/322 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP+AA LIG ++ SG G+ + SM
Sbjct: 736 DMAGLLKPKAAYELIGELK-SAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 794
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE + +KS N ++
Sbjct: 795 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFE--SDIKSPNTEI 852
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KVTPSSKVVGD A +M
Sbjct: 853 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYM 912
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 913 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 972
Query: 710 LPPFDFGKLKTEL-QERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L +E+ T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 973 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1032
Query: 769 PKVGEEFEVKIQPPQGFRQILK 790
+ GE E++I +G R I+K
Sbjct: 1033 MRNGETVEIEID--KGKRLIIK 1052
Score = 162 bits (411), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%)
Query: 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPF 837
KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLATRVR+ D++ I+
Sbjct: 527 KIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASK 586
Query: 838 VAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTN 897
A F + +SLE WGGATFDVA FL E PWERLE +RK IPN+ FQMLLR +NAVGY N
Sbjct: 587 TADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKN 646
Query: 898 YPDNEMH 904
YPDN +H
Sbjct: 647 YPDNVIH 653
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + +
Sbjct: 634 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 693
Query: 1029 XXXISYTGDVSDPSKKK-YDLKYYQNLADELVKAGTHVLCIK 1069
I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 694 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 735
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV+K
Sbjct: 1090 NVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK 1149
Query: 964 SI 965
+
Sbjct: 1150 QV 1151
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 454 bits (1168), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/440 (51%), Positives = 298/440 (67%), Gaps = 4/440 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 65 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 124
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + E A EF + G P++ K
Sbjct: 125 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 184
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A + ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 185 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 244
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 245 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 304
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGLTQEK-ISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L E+ + Q+K I+ G
Sbjct: 305 -SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 363
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 364 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGAGVRLDAGDGFQGAEISPYYDSLLVKLST 423
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + KM R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 424 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 483
Query: 420 PTKNRAQKLLNYLGTVLVNG 439
P+ +R K L Y+G V +NG
Sbjct: 484 PSLDRGTKTLEYIGNVTING 503
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 185/322 (57%), Gaps = 6/322 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP+AA LIG ++ SG G+ + SM
Sbjct: 736 DMAGLLKPKAAYELIGELK-SAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 794
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE + +KS N ++
Sbjct: 795 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFE--SDIKSPNTEI 852
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KVTPSSKVVGD A +M
Sbjct: 853 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYM 912
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 913 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 972
Query: 710 LPPFDFGKLKTEL-QERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L +E+ T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 973 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1032
Query: 769 PKVGEEFEVKIQPPQGFRQILK 790
+ GE E++I +G R I+K
Sbjct: 1033 MRNGETVEIEID--KGKRLIIK 1052
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%)
Query: 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPF 837
KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLATRVR+ D++ I+
Sbjct: 527 KIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASK 586
Query: 838 VAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTN 897
A F + +SLE WGGATFDVA FL E PWERLE +RK IPN+ FQMLLR +NAVGY N
Sbjct: 587 TADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKN 646
Query: 898 YPDNEMH 904
YPDN +H
Sbjct: 647 YPDNVIH 653
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + +
Sbjct: 634 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 693
Query: 1029 XXXISYTGDVSDPSKKK-YDLKYYQNLADELVKAGTHVLCIK 1069
I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 694 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 735
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV+K
Sbjct: 1090 NVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK 1149
Query: 964 SI 965
+
Sbjct: 1150 QV 1151
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/440 (50%), Positives = 298/440 (67%), Gaps = 4/440 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 65 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 124
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + E A EF + G P++ K
Sbjct: 125 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 184
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A + ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 185 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 244
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 245 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 304
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGLTQEK-ISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L E+ + Q+K I+ G
Sbjct: 305 -SGDEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 363
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 364 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 423
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + +M R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 424 HAISFKQAEEEMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 483
Query: 420 PTKNRAQKLLNYLGTVLVNG 439
P+ +R K L Y+G V +NG
Sbjct: 484 PSLDRGTKTLEYIGNVTING 503
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 185/322 (57%), Gaps = 6/322 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP+AA LIG ++ SG G+ + SM
Sbjct: 736 DMAGLLKPKAAYELIGELK-SAVDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 794
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE + +KS N ++
Sbjct: 795 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFE--SDIKSPNTEI 852
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KVTPSSKVVGD A +M
Sbjct: 853 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYM 912
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 913 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 972
Query: 710 LPPFDFGKLKTEL-QERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L +E+ T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 973 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1032
Query: 769 PKVGEEFEVKIQPPQGFRQILK 790
+ GE E++I +G R I+K
Sbjct: 1033 MRNGETVEIEID--KGKRLIIK 1052
Score = 162 bits (411), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 92/127 (72%)
Query: 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPF 837
KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLATRVR+ D++ I+
Sbjct: 527 KIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASK 586
Query: 838 VAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTN 897
A F + +SLE WGGATFDVA FL E PWERLE +RK IPN+ FQMLLR +NAVGY N
Sbjct: 587 TADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKN 646
Query: 898 YPDNEMH 904
YPDN +H
Sbjct: 647 YPDNVIH 653
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + +
Sbjct: 634 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 693
Query: 1029 XXXISYTGDVSDPSKKK-YDLKYYQNLADELVKAGTHVLCIK 1069
I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 694 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 735
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV+K
Sbjct: 1090 NVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIK 1149
Query: 964 SI 965
+
Sbjct: 1150 QV 1151
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/418 (54%), Positives = 288/418 (68%), Gaps = 4/418 (0%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
HR KADE+YLVG+G P+EAYL+I II +AK +DVDAIHPGYGFLSE FA+ + G
Sbjct: 45 HRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEG 104
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKA 123
I FIGP+ + GDKV AR AA+++ E+ + F +G P+I KA
Sbjct: 105 IIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKA 164
Query: 124 AYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAG 183
A +V+E F+RA SEAKAAFG+ +++EK IE P+HIEVQ+LGD G
Sbjct: 165 ALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEG 224
Query: 184 NVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCD 243
N+VHLYERDCSVQRRHQKVVE+AP+ L +R ++ + AV+L + VGY NAGTVEFL
Sbjct: 225 NIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVS 284
Query: 244 ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGL-TQEKISPQGF 300
+FYFIEVN R+QVEHT+TE ITG+D+VQSQI +A+G +L E+G+ QE I G+
Sbjct: 285 -GDEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGY 343
Query: 301 AIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAH 360
AIQ RVTTEDP NF PDTG+I +RSG G G+RLD + F GA+I+PYYDSLLVK+
Sbjct: 344 AIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTW 403
Query: 361 AADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTL 418
A + + KM R LREFR+RG+KTNIPFL NV+ + KF++G DT FID P+LF
Sbjct: 404 ALTFEQAARKMLRNLREFRIRGIKTNIPFLENVVQHPKFLSGEYDTSFIDTTPELFVF 461
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/449 (48%), Positives = 288/449 (64%), Gaps = 10/449 (2%)
Query: 1 MHMHRQKADESYLVGKG------LPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSD 54
+ +HR KADESY VG+G L P+E+YL+I E+IRVAK + DAIHPGYG LSE +
Sbjct: 50 LALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPE 109
Query: 55 FAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLK 114
F A AGI FIGP ++Q+G+KVAAR AI E +
Sbjct: 110 FVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAA 169
Query: 115 YGLPVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIE 174
G PV+ KA++ D+ + A EA AAFG +++EK +ER RH+E
Sbjct: 170 IGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVE 229
Query: 175 VQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSN 234
Q+LGD GNVVHL+ERDCSVQRR+QKVVE APAP+L R ++ ++K+A Y
Sbjct: 230 SQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIG 289
Query: 235 AGTVEFLCD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGL- 290
AGTVE+L D ++G+FYFIEVN R+QVEHTVTE +TG+D+V++QI + +G + P+ G+
Sbjct: 290 AGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVP 349
Query: 291 TQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYY 350
QE I G A+QCRVTTEDP NF PD GRI +RS G GIRLDG ++++GAII+ YY
Sbjct: 350 NQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYY 409
Query: 351 DSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFID 410
D LLVKV A A + + ++M+RALREFR+RGV TN+ FL ++ + KF + + T FID
Sbjct: 410 DPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFID 469
Query: 411 ENPQLFTLQPTKNRAQKLLNYLGTVLVNG 439
P+LF ++RA KLL YL V VNG
Sbjct: 470 TTPELFQQVKRQDRATKLLTYLADVTVNG 498
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 178/317 (56%), Gaps = 4/317 (1%)
Query: 465 LINTFDMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXX 524
+I DMAGLLKP AAK+L A+RE SG A+++A
Sbjct: 725 IIAVXDMAGLLKPAAAKVLFKALRE-ATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDA 783
Query: 525 XXXSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKS 584
++SG TSQP +G++V +L GS+ D GLD I S YWE R YA FE + +K
Sbjct: 784 AMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFE--SDLKG 841
Query: 585 GNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGD 644
++VYL+E+PGGQ+TNL+ QA SLGL + V +AY +AN + GDI+KV PSSKVVGD
Sbjct: 842 PASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVAPSSKVVGD 901
Query: 645 FAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG 704
A MV LT +V++ E+SFP+SVV L+G +G P G+PE L+ K LK
Sbjct: 902 MALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTV 961
Query: 705 RPGASLPPFDFGKLKTELQER-HPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTR 763
RPG+ L D + ++++ E +D + S +YP+V D+ +++GPV L T
Sbjct: 962 RPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTP 1021
Query: 764 IFLTGPKVGEEFEVKIQ 780
+ G GEE I+
Sbjct: 1022 AYFYGLADGEELFADIE 1038
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 88/118 (74%)
Query: 784 GFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFN 843
G +Q+L + GP+ F + +R K +LL DTT RD HQSLLATR+R++D+ +I+ +H
Sbjct: 528 GTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALP 587
Query: 844 NLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDN 901
NL SLE WGGATFDV++RFL E PWERL +R+ PN+ QMLLRGAN VGYTNYPDN
Sbjct: 588 NLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDN 645
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 65/100 (65%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRGAN VGYTNYPDNVV F + + G+D+FRVFD LN++ N+ +
Sbjct: 629 MLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLC 688
Query: 1029 XXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068
I YTGD+ + ++ KYDLKYY NLA EL KAG H++ +
Sbjct: 689 EAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAV 728
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 911 KSVPG---QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
K+ PG VGAPMPG + + V G V G LV + AMKME + A G + +
Sbjct: 1089 KAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEV 1146
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/449 (48%), Positives = 288/449 (64%), Gaps = 10/449 (2%)
Query: 1 MHMHRQKADESYLVGKG------LPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSD 54
+ +HR KADESY VG+G L P+E+YL+I E+IRVAK + DAIHPGYG LSE +
Sbjct: 50 LALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPE 109
Query: 55 FAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLK 114
F A AGI FIGP ++Q+G+KVAAR AI E +
Sbjct: 110 FVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAA 169
Query: 115 YGLPVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIE 174
G PV+ KA++ D+ + A EA AAFG +++EK +ER RH+E
Sbjct: 170 IGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVE 229
Query: 175 VQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSN 234
Q+LGD GNVVHL+ERDCSVQRR+QKVVE APAP+L R ++ ++K+A Y
Sbjct: 230 SQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIG 289
Query: 235 AGTVEFLCD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL--PELGL- 290
AGTVE+L D ++G+FYFIEVN R+QVEHTVTE +TG+D+V++QI + +G + P+ G+
Sbjct: 290 AGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVP 349
Query: 291 TQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYY 350
QE I G A+QCRVTTEDP NF PD GRI +RS G GIRLDG ++++GAII+ YY
Sbjct: 350 NQEDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYY 409
Query: 351 DSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFID 410
D LLVKV A A + + ++M+RALREFR+RGV TN+ FL ++ + KF + + T FID
Sbjct: 410 DPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFID 469
Query: 411 ENPQLFTLQPTKNRAQKLLNYLGTVLVNG 439
P+LF ++RA KLL YL V VNG
Sbjct: 470 TTPELFQQVKRQDRATKLLTYLADVTVNG 498
Score = 215 bits (548), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/317 (40%), Positives = 179/317 (56%), Gaps = 4/317 (1%)
Query: 465 LINTFDMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXX 524
+I DMAGLLKP AAK+L A+RE SG A+++A
Sbjct: 725 IIAVXDMAGLLKPAAAKVLFKALRE-ATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDA 783
Query: 525 XXXSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKS 584
++SG TSQP +G++V +L GS+ D GLD I S YWE R YA FE + +K
Sbjct: 784 AMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFE--SDLKG 841
Query: 585 GNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGD 644
++VYL+E+PGGQ+TNL+ QA SLGL + V +AY +AN + GDI+KVTPSSKVVGD
Sbjct: 842 PASEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGD 901
Query: 645 FAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG 704
A MV LT +V++ E+SFP+SVV L+G +G P G+PE L+ K LK
Sbjct: 902 MALMMVSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTV 961
Query: 705 RPGASLPPFDFGKLKTELQER-HPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTR 763
RPG+ L D + ++++ E +D + S +YP+V D+ +++GPV L T
Sbjct: 962 RPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTP 1021
Query: 764 IFLTGPKVGEEFEVKIQ 780
+ G GEE I+
Sbjct: 1022 AYFYGLADGEELFADIE 1038
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 88/118 (74%)
Query: 784 GFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFN 843
G +Q+L + GP+ F + +R K +LL DTT RD HQSLLATR+R++D+ +I+ +H
Sbjct: 528 GTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALP 587
Query: 844 NLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDN 901
NL SLE WGGATFDV++RFL E PWERL +R+ PN+ QMLLRGAN VGYTNYPDN
Sbjct: 588 NLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDN 645
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 65/100 (65%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRGAN VGYTNYPDNVV F + + G+D+FRVFD LN++ N+ +
Sbjct: 629 MLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLC 688
Query: 1029 XXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068
I YTGD+ + ++ KYDLKYY NLA EL KAG H++ +
Sbjct: 689 EAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAV 728
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 911 KSVPG---QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
K+ PG VGAPMPG + + V G V G LV + AMKME + A G + +
Sbjct: 1089 KAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEV 1146
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 230/312 (73%), Gaps = 1/312 (0%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP A +L+ ++R++ SGAGVA+M+AC SM
Sbjct: 282 DMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSM 341
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SGMTSQPSMGA+VA +G+ +DT + ++ + YS YWE R LYA F+CT TMKSGN+DV
Sbjct: 342 SGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDV 401
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y NEIPGGQYTNL FQA+S+GLG F++VKKAY EAN +LGD+IKVTPSSK+VGD AQFM
Sbjct: 402 YENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFM 461
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L+ E A+AEELSFP+SVVEFLQG IG P+ GFPEP RSKVLKD+PR+EGRPGAS
Sbjct: 462 VQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGAS 521
Query: 710 LPPFDFGKLKTELQERH-PEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
LPP D L+ EL +RH E T DV+SAA+YP V + F +FGP+D L+TR+FL G
Sbjct: 522 LPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQG 581
Query: 769 PKVGEEFEVKIQ 780
PK+ EEFEV+++
Sbjct: 582 PKIAEEFEVELE 593
Score = 216 bits (549), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 108/121 (89%)
Query: 781 PPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAH 840
PP GFR IL +GPE FA+AVR + LLLMDTTFRDAHQSLLATRVR+HDL KI+P+VAH
Sbjct: 77 PPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAH 136
Query: 841 KFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
F+ L+S+ENWGGATFDVA+RFL+ECPW RL+E+R+ IPNIPFQMLLRGANAVGYTNYPD
Sbjct: 137 NFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPD 196
Query: 901 N 901
N
Sbjct: 197 N 197
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 84/109 (77%)
Query: 961 VVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXX 1020
++ +I MLLRGANAVGYTNYPDNVV+KFC+++ + GMDVFRVFDSLNYLPN++L
Sbjct: 173 LIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEA 232
Query: 1021 XXXXXXXXXXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIK 1069
ISYTGDV+DPS+ KY L+YY LA+ELV+AGTH+LCIK
Sbjct: 233 AGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIK 281
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 902 EMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGV 961
EMH HPKA K V GQ+GAPMPG V++I+V G KV KG L VLSAMKME VV +P++G
Sbjct: 637 EMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGT 696
Query: 962 VKSIDAS--MLLRGANAV 977
V+ + + M L G + +
Sbjct: 697 VRKVHVTKDMTLEGDDLI 714
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 409 IDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPS 441
+DENP+LF L+P +NRAQKLL+YLG V+VNGP+
Sbjct: 21 MDENPELFQLRPAQNRAQKLLHYLGHVMVNGPT 53
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 230/312 (73%), Gaps = 1/312 (0%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXSM 529
DMAGLLKP A +L+ ++R++ SGAGVA+M+AC SM
Sbjct: 282 DMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSM 341
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SGMTSQPSMGA+VA +G+ +DT + ++ + YS YWE R LYA F+CT TMKSGN+DV
Sbjct: 342 SGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDV 401
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y NEIPGGQYTNL FQA+S+GLG F++VKKAY EAN +LGD+IKVTPSSK+VGD AQFM
Sbjct: 402 YENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFM 461
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L+ E A+AEELSFP+SVVEFLQG IG P+ GFPEP RSKVLKD+PR+EGRPGAS
Sbjct: 462 VQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGAS 521
Query: 710 LPPFDFGKLKTELQERH-PEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
LPP D L+ EL +RH E T DV+SAA+YP V + F +FGP+D L+TR+FL G
Sbjct: 522 LPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQG 581
Query: 769 PKVGEEFEVKIQ 780
PK+ EEFEV+++
Sbjct: 582 PKIAEEFEVELE 593
Score = 216 bits (549), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 94/121 (77%), Positives = 108/121 (89%)
Query: 781 PPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAH 840
PP GFR IL +GPE FA+AVR + LLLMDTTFRDAHQSLLATRVR+HDL KI+P+VAH
Sbjct: 77 PPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAH 136
Query: 841 KFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
F+ L+S+ENWGGATFDVA+RFL+ECPW RL+E+R+ IPNIPFQMLLRGANAVGYTNYPD
Sbjct: 137 NFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPD 196
Query: 901 N 901
N
Sbjct: 197 N 197
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 83/108 (76%)
Query: 961 VVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXX 1020
++ +I MLLRGANAVGYTNYPDNVV+KFC+++ + GMDVFRVFDSLNYLPN++L
Sbjct: 173 LIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEA 232
Query: 1021 XXXXXXXXXXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068
ISYTGDV+DPS+ KY L+YY LA+ELV+AGTH+LCI
Sbjct: 233 AGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCI 280
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 54/78 (69%), Gaps = 2/78 (2%)
Query: 902 EMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGV 961
EMH HPKA K V GQ+GAPMPG V++I+V G KV KG L VLSAMKME VV +P++G
Sbjct: 637 EMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGT 696
Query: 962 VKSIDAS--MLLRGANAV 977
V+ + + M L G + +
Sbjct: 697 VRKVHVTKDMTLEGDDLI 714
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 409 IDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPS 441
+DENP+LF L+P +NRAQKLL+YLG V+VNGP+
Sbjct: 21 MDENPELFQLRPAQNRAQKLLHYLGHVMVNGPT 53
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 347 bits (890), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 176/416 (42%), Positives = 256/416 (61%), Gaps = 6/416 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H + ADE+Y++G P++ YLN II +A E DAIHPGYGFL+E ++FA+ +AG
Sbjct: 41 HVKLADEAYMIGTD--PLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAG 98
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKA 123
I FIGP V++ MGDK +++ + EEA + G PV+ KA
Sbjct: 99 ITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKA 158
Query: 124 AYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAG 183
E++ +N+++AS EA+ AFG G + +EKFIE P+HIE Q+LGDK G
Sbjct: 159 TAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHG 218
Query: 184 NVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCD 243
NV+HL ERDCS+QRR+QK+VEIAP+ L R ++ K AK +GY NAGT+EF+ D
Sbjct: 219 NVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIAD 278
Query: 244 ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQ 303
+ G YFIE+N R+QVEH V+E +TG+D+V+ QI++A G L + QE + G+AI+
Sbjct: 279 QEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLT---IKQEDVKFNGYAIE 335
Query: 304 CRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAAD 363
CR+ EDP KNF P T IE + G GIR++ A+A G ++PYYDS++ K+I A
Sbjct: 336 CRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHAAA-RGFEVTPYYDSMIAKLITWAPT 394
Query: 364 LQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
+ +M AL + + GVKT IP L+N++ + F G T +++E+P++F +
Sbjct: 395 WDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVFEYE 450
>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
Complexed With Amppnp
Length = 451
Score = 332 bits (850), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 176/411 (42%), Positives = 245/411 (59%), Gaps = 6/411 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+H Q ADE+Y VG L ++YLNIP I+ +A D +HPGYGFL+E +DFA+
Sbjct: 39 LHTQIADEAYCVGPTLSK-DSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEAC 97
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
++FIGPS +Q+MG K A+ I + EA + K G PVI K
Sbjct: 98 QLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIK 157
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A +++E F+ EA+ AFGNG +++EKFIE RHIE+Q++GD
Sbjct: 158 ATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSY 217
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GNV+HL ERDC++QRR QK+VE AP+P LD R +M + AV+ AK V Y NAGT+EF+
Sbjct: 218 GNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIY 277
Query: 243 D-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFA 301
D +FYF+E+N R+QVEH VTE +TG+DLV+ Q++VA G LP QE I G A
Sbjct: 278 DLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLP---YKQEDIKLTGHA 334
Query: 302 IQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHA 361
I+ R+ E+P KNF P G+IE + + G G+R++ A + I PYYDS++ K+I H
Sbjct: 335 IEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESA-CYTNYTIPPYYDSMVAKLIIHE 393
Query: 362 ADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412
+ RAL EF V G+ T IPF + +L N F +G +T F+++N
Sbjct: 394 PTRDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSGKFNTNFLEQN 444
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 306 bits (785), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/410 (40%), Positives = 246/410 (60%), Gaps = 8/410 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
MH ADES +G P ++YL IP II A+ AIHPGYGFL+E +DFA+ + +
Sbjct: 40 MHLSLADESVCIGPA-PATQSYLQIPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERS 98
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEE-AMEFCLKYGLPVIF 121
G F+GP+ V++ MGDKV+A+ A + EE A+ + G PVI
Sbjct: 99 GFTFVGPTAEVIRLMGDKVSAKDAMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVII 158
Query: 122 KAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDK 181
KAA ++ ++ + +EA AAFGN +++EKF+ PRH+EVQ+L D
Sbjct: 159 KAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDG 218
Query: 182 AGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241
GN +HL +RDCS+QRRHQKV+E APAP +D R ++ V+ +GY AGT EFL
Sbjct: 219 QGNAIHLGDRDCSLQRRHQKVIEEAPAPGIDEKARQEVFARCVQACIEIGYRGAGTFEFL 278
Query: 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFA 301
E+G+FYFIE+N R+QVEH V+E +TGVD+V+ +R+A G +L + QE + +G A
Sbjct: 279 Y-ENGRFYFIEMNTRVQVEHPVSEMVTGVDIVKEMLRIASG---EKLSIRQEDVVIRGHA 334
Query: 302 IQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHA 361
++CR+ EDP K F P G+++ F + G G+R+D + ++G + P YDSL+ KVI +
Sbjct: 335 LECRINAEDP-KTFMPSPGKVKHFHAPGGNGVRVD-SHLYSGYSVPPNYDSLVGKVITYG 392
Query: 362 ADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
AD + A+M AL E V G+KTN +++ + F G V+ +++++
Sbjct: 393 ADRDEALARMRNALDELIVDGIKTNTELHKDLVRDAAFCKGGVNIHYLEK 442
>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-coa
Carboxylase (pcc)
Length = 681
Score = 299 bits (766), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 170/435 (39%), Positives = 249/435 (57%), Gaps = 26/435 (5%)
Query: 3 MHRQKADESYLVGKGLPPV-EAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLD 61
+H Q ADE+ +G PP ++Y+ I +++ + A+HPGYGFLSE S FA+A+
Sbjct: 40 LHVQMADEAVHIGP--PPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEA 97
Query: 62 AGIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIF 121
G+ F+GP ++ MGDK+ +++ A ++ +EA++ + G PV+
Sbjct: 98 EGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMI 157
Query: 122 KAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDK 181
KA+ ++ E FQ + +EA +FG+ +FIEKF+ +PRHIE+Q+L D
Sbjct: 158 KASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDS 217
Query: 182 AGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241
GN ++L ER+CS+QRR+QKVVE AP+P LD R M + AV LAK VGY++AGTVEF+
Sbjct: 218 HGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFI 277
Query: 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFA 301
D FYF+E+N RLQVEH VTE ITGVDLV+ IRVA G L +TQ + G+A
Sbjct: 278 VDGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAG---EPLSITQGDVKLTGWA 334
Query: 302 IQCRVTTEDPAKNFQPDTGRIEVFR------------SGEGMGIRLDGASA-------FA 342
I+ R+ EDP + F P GR+ +R +G+ G G +A +
Sbjct: 335 IENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTGVYE 394
Query: 343 GAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNG 402
G IS YYD ++ K+ A ++ M AL F V G+ N+PFL V+ + KF++G
Sbjct: 395 GGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISG 454
Query: 403 AVDTYFI-DENPQLF 416
+ T FI +E P+ F
Sbjct: 455 DMTTAFIAEEYPEGF 469
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGY 979
PMPG ++++ V+VG +V++G AL + AMKME +++A +GVV I+AS G
Sbjct: 618 PMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINAS--------AGN 669
Query: 980 TNYPDNVVYKF 990
+ D+V+ +F
Sbjct: 670 SLAVDDVIMEF 680
>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazoles Series
pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Benzimidazole Series
Length = 486
Score = 299 bits (765), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 62 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 120
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 121 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 180
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 181 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 240
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 241 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 300
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 301 -ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 356
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 357 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 414
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 415 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 463
>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 298 bits (764), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 61 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 119
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 120 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 179
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 180 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 239
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 240 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 299
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 300 -ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 355
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 356 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 413
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 414 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 462
>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 469
Score = 298 bits (764), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 61 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 119
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 120 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 179
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 180 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 239
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 240 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 299
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 300 -ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 355
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 356 ECRINAEDP-NTFLPSPGKITRFHAPGGAGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 413
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 414 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 462
>pdb|3RV4|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase R16e Mutant
In Complex With Mg-Adp And Bicarbonate
Length = 452
Score = 298 bits (764), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 44 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 102
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 103 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 162
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 163 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 222
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 223 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 282
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 283 -ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 338
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 339 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 396
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 397 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|3RUP|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RUP|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And Two Ca Ions
pdb|3RV3|A Chain A, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
pdb|3RV3|B Chain B, Crystal Structure Of E.Coli Biotin Carboxylase In Complex
With Two Adp And One Mg Ion
Length = 452
Score = 298 bits (764), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 44 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 102
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 103 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 162
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 163 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 222
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 223 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 282
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 283 -ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 338
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 339 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 396
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 397 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
Biotin, Bicarbonate, Adp And Mg Ion
Length = 444
Score = 298 bits (763), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 41 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 219
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 220 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 279
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 280 -ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 335
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 336 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 393
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 394 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
Subunit Of Acetyl-Coa Carboxylase
pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amppnp And Adp
pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Atp Analog, Adpcf2p.
pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 1
pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 2
pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
Complex With Potent Inhibitor 3
pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With Amino-Oxazole Fragment Series
pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
Quinazolinone Fragment
pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Triazine-2,4-Diamine Fragment
pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
Ylamine Fragment
pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Amino-Thiazole-Pyrimidine Fragment
pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
Complex With The Imidazole-Pyrimidine Inhibitor
Length = 449
Score = 298 bits (763), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 41 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 219
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 220 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 279
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 280 -ENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 335
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 336 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 393
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 394 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
pdb|1DV2|B Chain B, The Structure Of Biotin Carboxylase, Mutant E288k,
Complexed With Atp
Length = 452
Score = 296 bits (759), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 158/409 (38%), Positives = 242/409 (59%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 44 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 102
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 103 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 162
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 163 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 222
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 223 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 282
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFI++N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 283 -ENGEFYFIKMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 338
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 339 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 396
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 397 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 445
>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
Length = 444
Score = 296 bits (757), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 158/409 (38%), Positives = 241/409 (58%), Gaps = 8/409 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +G
Sbjct: 41 HVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSG 99
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXX-XXXXXEEAMEFCLKYGLPVIFK 122
FIGP ++ MGDKV+A A + ++ + G PVI K
Sbjct: 100 FIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIK 159
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 160 ASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQ 219
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 220 GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLF 279
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E+G+FYFIE+N R+QV H VTE ITGVDL++ Q+R+A G L + QE++ +G A+
Sbjct: 280 -ENGEFYFIEMNTRIQVAHPVTEMITGVDLIKEQLRIAAGQP---LSIKQEEVHVRGHAV 335
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP F P G+I F + G G+R + + +AG + PYYDS++ K+I +
Sbjct: 336 ECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWE-SHIYAGYTVPPYYDSMIGKLICYGE 393
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 394 NRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEK 442
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 296 bits (757), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 170/407 (41%), Positives = 238/407 (58%), Gaps = 6/407 (1%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H +AD + +G G P ++YL II A + AIHPGYGFLSE +DFA+A +AG
Sbjct: 47 HVAEADIAVDLG-GAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAG 105
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKA 123
+ F+GP + MG K AA+ ++ E + G PV+ KA
Sbjct: 106 LLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKA 165
Query: 124 AYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAG 183
A + ++ E A EAKAAFG+ M +EK++ +PRH+E+Q+ D+ G
Sbjct: 166 AAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHG 225
Query: 184 NVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCD 243
+ ++L ERDCS+QRRHQKVVE APAP L +R M + AV+ A+ +GY AGTVEFL D
Sbjct: 226 HCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLD 285
Query: 244 ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQ 303
E GQF+F+E+N RLQVEH VTE ITG+DLV QIRVA G LP LTQE++ G AI+
Sbjct: 286 ERGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEALP---LTQEQVPLNGHAIE 342
Query: 304 CRVTTEDPAKNFQPDTGRIEVFR-SGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
R+ EDP +F P +GR+ ++R + G G R+D + G +SP+YD +L K+IA
Sbjct: 343 VRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVD-SGVREGDEVSPFYDPMLAKLIAWGE 401
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFI 409
+ + ++ L E V G++TN+ FL +L + F +DT FI
Sbjct: 402 TREEARQRLLAMLAETSVGGLRTNLAFLRRILGHPAFAAAELDTGFI 448
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
G + APM GS++ + V+ G VE GA LVVL AMKME ++AP GVVK++ S
Sbjct: 583 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCS 636
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 276 bits (705), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 164/407 (40%), Positives = 230/407 (56%), Gaps = 7/407 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
++ + AD S +GK E+YLNIP II A+ + DAI PGYGFLSE +F +
Sbjct: 44 LYLKYADASICIGKARSS-ESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKH 102
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFK 122
I+FIGPS DK A+Q + E A + + G PVI K
Sbjct: 103 NIKFIGPSVEAXNLXSDKSKAKQVXQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILK 162
Query: 123 AAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
AA +D+E+ + A SEA AFG+G + EK+I+ PRHIEVQ++GD
Sbjct: 163 AAAGGGGRGXRVVENEKDLEKAYWSAESEAXTAFGDGTXYXEKYIQNPRHIEVQVIGDSF 222
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GNV+H+ ERDCS QRRHQK++E +PA LD R ++ + A+K AK +GY AGT EFL
Sbjct: 223 GNVIHVGERDCSXQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLV 282
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
D++ FYFIE N RLQVEH V+E ++G+D+++ I+VAEG LP +QE I G +I
Sbjct: 283 DKNLDFYFIEXNTRLQVEHCVSEXVSGIDIIEQXIKVAEGYALP----SQESIKLNGHSI 338
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+T ED +K F P G+I + G +R + + + + YYDS + K++ A
Sbjct: 339 ECRITAED-SKTFLPSPGKITKYIPPAGRNVRXE-SHCYQDYSVPAYYDSXIGKLVVWAE 396
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFI 409
D + AK AL E + G+KT F L+ N F+N DT ++
Sbjct: 397 DRNKAIAKXKVALDELLISGIKTTKDFHLSXXENPDFINNNYDTNYL 443
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/410 (36%), Positives = 222/410 (54%), Gaps = 13/410 (3%)
Query: 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG 63
H AD S + G E YL+I +II AK+ AI PGYGFLSE +DF+
Sbjct: 70 HVTDADFSVAL-HGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQEN 128
Query: 64 IRFIGPSPYVVQQMGDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKA 123
I F+GPS ++++G K +AR+ A + +EA E K PV+ K+
Sbjct: 129 IVFVGPSGDAIRKLGLKHSAREIA-ERAKVPLVPGSGLIKDAKEAKEVAKKLEYPVMVKS 187
Query: 124 AYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAG 183
+D+E F+ + K+ FG+ +F+E+F+ RH+E+Q++GD G
Sbjct: 188 TAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFG 247
Query: 184 NVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCD 243
+ + ERDCS+QRR+QKV+E PAP+L R KM + +L + Y AGTVEF+ D
Sbjct: 248 KAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYD 307
Query: 244 ES-GQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
E +FYF+EVNARLQVEH +TE +TG+DLV+ +R+A + P+ T KI G +I
Sbjct: 308 EQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDS-PDFDNT--KIEVSGASI 364
Query: 303 QCRVTTEDPAKNFQPDTGRIE--VFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAH 360
+ R+ E+P K+F+P G++ F S R+D G +S YD L K+I H
Sbjct: 365 EARLYAENPVKDFRPSPGQLTSVSFPSWA----RVD-TWVKKGTNVSAEYDPTLAKIIVH 419
Query: 361 AADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFID 410
D + K+N+AL E V G TNI +L ++ +++ F V T +D
Sbjct: 420 GKDRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAKVATKVLD 469
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 932 VGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
VGD VE G ++++ AMK EMVV A G V I
Sbjct: 1185 VGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKI 1218
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 212/453 (46%), Gaps = 56/453 (12%)
Query: 7 KADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRF 66
K + Y+ G P Y N+ I+ +AK V A+ G+G SE + + G+ F
Sbjct: 108 KMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAF 167
Query: 67 IGPSPYVVQQMGDKVAAR---------------------------QAAIDSXXXXXXXXX 99
+GP + +GDK+A+ Q
Sbjct: 168 LGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 227
Query: 100 XXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNG 159
+E +E + G P++ KA+ ED F++ SE +
Sbjct: 228 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS---- 283
Query: 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKM 219
+F+ K + RH+EVQ+L D+ GN V L+ RDCS+QRRHQK+VE APA + + M
Sbjct: 284 PIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFM 343
Query: 220 TDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRV 279
A++LAK VGY +AGTVE+L + G F+F+E+N RLQVEH TE I V+L +Q+++
Sbjct: 344 EQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQI 403
Query: 280 AEGMTLPEL-------GLTQEKISP------------QGFAIQCRVTTEDPAKNFQPDTG 320
A G+ L L G + ++P +G I R+T+E+P + F+P +G
Sbjct: 404 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSG 463
Query: 321 RIEV--FRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREF 378
++ FRS + + S A + + DS + + + + + M AL+E
Sbjct: 464 TVQELNFRSSKNVWGYF---SVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKEL 520
Query: 379 RVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFID 410
+RG +T + +L+N+L + F N +DT ++D
Sbjct: 521 SIRGDFRTTVEYLINLLETESFQNNDIDTGWLD 553
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 212/453 (46%), Gaps = 56/453 (12%)
Query: 7 KADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRF 66
K + Y+ G P Y N+ I+ +AK V A+ G+G SE + + G+ F
Sbjct: 92 KMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAF 151
Query: 67 IGPSPYVVQQMGDKVAAR---------------------------QAAIDSXXXXXXXXX 99
+GP + +GDK+A+ Q
Sbjct: 152 LGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 211
Query: 100 XXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNG 159
+E +E + G P++ KA+ ED F++ SE +
Sbjct: 212 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS---- 267
Query: 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKM 219
+F+ K + RH+EVQ+L D+ GN V L+ RDCS+QRRHQK+VE APA + + M
Sbjct: 268 PIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFM 327
Query: 220 TDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRV 279
A++LAK VGY +AGTVE+L + G F+F+E+N RLQVEH TE I V+L +Q+++
Sbjct: 328 EQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQI 387
Query: 280 AEGMTLPEL-------GLTQEKISP------------QGFAIQCRVTTEDPAKNFQPDTG 320
A G+ L L G + ++P +G I R+T+E+P + F+P +G
Sbjct: 388 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSG 447
Query: 321 RIEV--FRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREF 378
++ FRS + + S A + + DS + + + + + M AL+E
Sbjct: 448 TVQELNFRSSKNVWGYF---SVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKEL 504
Query: 379 RVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFID 410
+RG +T + +L+N+L + F N +DT ++D
Sbjct: 505 SIRGDFRTTVEYLINLLETESFQNNDIDTGWLD 537
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 212/453 (46%), Gaps = 56/453 (12%)
Query: 7 KADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRF 66
K + Y+ G P Y N+ I+ +AK V A+ G+G SE + + G+ F
Sbjct: 102 KMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAF 161
Query: 67 IGPSPYVVQQMGDKVAAR---------------------------QAAIDSXXXXXXXXX 99
+GP + +GDK+A+ Q
Sbjct: 162 LGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 221
Query: 100 XXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNG 159
+E +E + G P++ KA+ ED F++ SE +
Sbjct: 222 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS---- 277
Query: 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKM 219
+F+ K + RH+EVQ+L D+ GN V L+ RDCS+QRRHQK+VE APA + + M
Sbjct: 278 PIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFM 337
Query: 220 TDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRV 279
A++LAK VGY +AGTVE+L + G F+F+E+N RLQVEH TE I V+L +Q+++
Sbjct: 338 EQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQI 397
Query: 280 AEGMTLPEL-------GLTQEKISP------------QGFAIQCRVTTEDPAKNFQPDTG 320
A G+ L L G + ++P +G I R+T+E+P + F+P +G
Sbjct: 398 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSG 457
Query: 321 RIEV--FRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREF 378
++ FRS + + S A + + DS + + + + + M AL+E
Sbjct: 458 TVQELNFRSSKNVWGYF---SVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKEL 514
Query: 379 RVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFID 410
+RG +T + +L+N+L + F N +DT ++D
Sbjct: 515 SIRGDFRTTVEYLINLLETESFQNNDIDTGWLD 547
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 193 bits (491), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 212/453 (46%), Gaps = 56/453 (12%)
Query: 7 KADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRF 66
K + Y+ G P Y N+ I+ +AK V A+ G+G SE + + G+ F
Sbjct: 108 KMADHYVPVPGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAF 167
Query: 67 IGPSPYVVQQMGDKVAAR---------------------------QAAIDSXXXXXXXXX 99
+GP + +GDK+A+ Q
Sbjct: 168 LGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 227
Query: 100 XXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNG 159
+E +E + G P++ KA+ ED F++ SE +
Sbjct: 228 GCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS---- 283
Query: 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKM 219
+F+ K + RH+EVQ+L D+ GN V L+ RDCS+QRRHQK+VE APA + + M
Sbjct: 284 PIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAIFEFM 343
Query: 220 TDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRV 279
A++LAK VGY +AGTVE+L + G F+F+E+N RLQVEH TE I V+L +Q+++
Sbjct: 344 EQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQI 403
Query: 280 AEGMTLPEL-------GLTQEKISP------------QGFAIQCRVTTEDPAKNFQPDTG 320
A G+ L L G + ++P +G I R+T+E+P + F+P +G
Sbjct: 404 AMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSG 463
Query: 321 RIEV--FRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREF 378
++ FRS + + S A + + DS + + + + + M AL+E
Sbjct: 464 TVQELNFRSSKNVWGYF---SVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALKEL 520
Query: 379 RVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFID 410
+RG +T + +L+N+L + F N +DT ++D
Sbjct: 521 SIRGDFRTTVEYLINLLETESFQNNDIDTGWLD 553
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 190 bits (482), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 131/452 (28%), Positives = 215/452 (47%), Gaps = 55/452 (12%)
Query: 7 KADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRF 66
K + Y+ G P Y N+ I+ +AK V A+ G+G SE + +L GI F
Sbjct: 93 KMADHYVPVPGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAF 152
Query: 67 IGPSPYVVQQMGDKVA----ARQAAIDSXXXXXXXXXXXXXXXE---------------- 106
+GP + +GDK+A A+ A I + +
Sbjct: 153 MGPPSQAMWALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKG 212
Query: 107 ------EAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGA 160
+ ++ + G PV+ KA+ +D F++ +E +
Sbjct: 213 YVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGS----P 268
Query: 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMT 220
+F+ + ++ RH+EVQ+L D+ GN + L+ RDCSVQRRHQK++E APA V M
Sbjct: 269 IFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQRRHQKIIEEAPATIATPAVFEHME 328
Query: 221 DLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVA 280
AVKLAK VGY +AGTVE+L + G FYF+E+N RLQVEH TE + V+L +Q+++A
Sbjct: 329 QCAVKLAKMVGYVSAGTVEYLYSQDGSFYFLELNPRLQVEHPCTEMVADVNLPAAQLQIA 388
Query: 281 EGMTLPEL-------GLTQEKIS------------PQGFAIQCRVTTEDPAKNFQPDTGR 321
G+ L + G++ S P+G I R+T+E+P + F+P +G
Sbjct: 389 MGIPLYRIKDIRMMYGVSPWGDSPIDFEDSAHVPCPRGHVIAARITSENPDEGFKPSSGT 448
Query: 322 IEV--FRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFR 379
++ FRS + + A+A + + DS + + + + + M AL+E
Sbjct: 449 VQELNFRSNKNVWGYFSVAAAGG---LHEFADSQFGHCFSWGENREEAISNMVVALKELS 505
Query: 380 VRG-VKTNIPFLLNVLTNQKFVNGAVDTYFID 410
+RG +T + +L+ +L + F +DT ++D
Sbjct: 506 IRGDFRTTVEYLIKLLETESFQMNRIDTGWLD 537
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 128/444 (28%), Positives = 209/444 (47%), Gaps = 63/444 (14%)
Query: 24 YLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG--IRFIGPSPYVVQQMGDKV 81
Y N+ I+ +A+ DVDA+ G+G SE + + + + FIGP ++ +GDK+
Sbjct: 115 YANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKI 174
Query: 82 AARQAA--------------IDSXXXXXXXXXXXX----------XXXEEAMEFCLKYGL 117
++ A +D+ E+ ++ + G
Sbjct: 175 SSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGF 234
Query: 118 PVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQL 177
PV+ KA+ + ED + +A++E + +FI K R RH+EVQL
Sbjct: 235 PVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRARHLEVQL 290
Query: 178 LGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT 237
L D+ G + L+ RDCSVQRRHQK++E AP ++M AV+L K VGY +AGT
Sbjct: 291 LADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGT 350
Query: 238 VEFL-CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPEL-------G 289
VE+L + G+FYF+E+N RLQVEH TE ++GV+L +Q+++A G+ + + G
Sbjct: 351 VEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYG 410
Query: 290 LT-------------------QEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEV--FRSG 328
+ Q + P+G CR+T+EDP F+P G + FRS
Sbjct: 411 MNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSS 470
Query: 329 EGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG-VKTNI 387
+ S I + DS + A + Q+S M AL+E +RG +T +
Sbjct: 471 SNVWGYF---SVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTV 527
Query: 388 PFLLNVLTNQKFVNGAVDTYFIDE 411
+L+ +L + F + + T ++D+
Sbjct: 528 EYLIKLLETEDFEDNTITTGWLDD 551
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 128/444 (28%), Positives = 209/444 (47%), Gaps = 63/444 (14%)
Query: 24 YLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG--IRFIGPSPYVVQQMGDKV 81
Y N+ I+ +A+ DVDA+ G+G SE + + + + FIGP ++ +GDK+
Sbjct: 116 YANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKI 175
Query: 82 AARQAA--------------IDSXXXXXXXXXXXX----------XXXEEAMEFCLKYGL 117
++ A +D+ E+ ++ + G
Sbjct: 176 SSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGF 235
Query: 118 PVIFKAAYXXXXXXXXXXXKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQL 177
PV+ KA+ + ED + +A++E + +FI K R RH+EVQL
Sbjct: 236 PVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRARHLEVQL 291
Query: 178 LGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT 237
L D+ G + L+ RDCSVQRRHQK++E AP ++M AV+L K VGY +AGT
Sbjct: 292 LADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYVSAGT 351
Query: 238 VEFL-CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPEL-------G 289
VE+L + G+FYF+E+N RLQVEH TE ++GV+L +Q+++A G+ + + G
Sbjct: 352 VEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRTLYG 411
Query: 290 LT-------------------QEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEV--FRSG 328
+ Q + P+G CR+T+EDP F+P G + FRS
Sbjct: 412 MNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSS 471
Query: 329 EGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG-VKTNI 387
+ S I + DS + A + Q+S M AL+E +RG +T +
Sbjct: 472 SNVWGYF---SVGNNGNIHSFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTV 528
Query: 388 PFLLNVLTNQKFVNGAVDTYFIDE 411
+L+ +L + F + + T ++D+
Sbjct: 529 EYLIKLLETEDFEDNTITTGWLDD 552
>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
pdb|2NX9|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
Length = 464
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 6/99 (6%)
Query: 805 KSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNL--YSLENWGGATFDVALRF 862
K + + D RDAHQSL ATR+R D+L I A + + + +SLE WGGATFD +RF
Sbjct: 6 KRVGVTDVVLRDAHQSLFATRLRIDDMLPI----AQQLDQIGYWSLECWGGATFDSCIRF 61
Query: 863 LHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDN 901
L E PW+RL +++ +PN P QMLLRG N +GY +Y D+
Sbjct: 62 LGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADD 100
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 135/302 (44%), Gaps = 40/302 (13%)
Query: 470 DMAGLLKPRAAKLLIGAIREKXXXXXXXXXXXXXSGAGVASM--IACXXXXXXXXXXXXX 527
DMAG+L P AA+ L+ ++++ S AG+A M +
Sbjct: 179 DMAGILTPYAAEELVSTLKKQVDVELHLHCH---STAGLADMTLLKAIEAGVDRVDTAIS 235
Query: 528 SMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNA 587
SMSG P+ ++VA+LQG+ DTGLD+ + +AY+ R+ Y FE MK +A
Sbjct: 236 SMSGTYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHAFE--GMMKGSDA 293
Query: 588 DVYLNEIPGGQYTNLQFQAYSLG----LGEFFEDVKKAYREANLLLGDIIKVTPSSKVVG 643
+ + ++PGG TN++ Q L E++ + E LG + VTP+S++VG
Sbjct: 294 RILVAQVPGGMLTNMESQLKQQNALDKLDLVLEEIPRVREE----LGFLPLVTPTSQIVG 349
Query: 644 DFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEP----LRSKVLKDM 699
A V N + E K++ + G + Y P P L+++VL
Sbjct: 350 TQA---VINVVLGERY----------KTITKETSGVLKGEYGKTPAPVNTELQARVLAGA 396
Query: 700 PRIEGRP----GASLPPFDFGKLKTELQERH---PEATDRDVMSAALYPQVTEDYLTFRE 752
I RP A +P ++ + +E+H E DV++ AL+ QV +L R
Sbjct: 397 EAITCRPADLIAAEMPTLQ-DRVLQQAKEQHITLAENAIDDVLTIALFDQVGWKFLANRH 455
Query: 753 SF 754
+
Sbjct: 456 NL 457
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRG N +GY +Y D+VV F + +V+ GMDVFRVFD++N + N+
Sbjct: 84 MLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHA 143
Query: 1029 XXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIK 1069
+ YT + ++L+ + ++A +L + G + +K
Sbjct: 144 QGTLCYT------TSPVHNLQTWVDVAQQLAELGVDSIALK 178
>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Oxaloacetate
Length = 539
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 801 VRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860
V + + + + + RDAHQSL+ATR+ D++ + +S+E WGGAT+D +
Sbjct: 19 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADI--DAAGYWSVECWGGATYDSCI 76
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
RFL+E PWERL RK +PN QMLLRG N +GY +Y D
Sbjct: 77 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYND 116
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 122/320 (38%), Gaps = 25/320 (7%)
Query: 470 DMAGLLKPRAAKLLIGAIREKX-XXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXS 528
DMA LLKP+ A +I AI++ +G S++ S
Sbjct: 196 DMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS 255
Query: 529 MSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNAD 588
MS +V L+G+ T LD + +++ R Y FE T + +
Sbjct: 256 MSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLV---DTS 312
Query: 589 VYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQF 648
++ ++IPGG +N++ Q + G + ++V G VTPSS++VG A F
Sbjct: 313 IFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVF 372
Query: 649 MVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG---- 704
N + E + + EF +G Y P KV+K G
Sbjct: 373 ---NVMMGE----------YKRMTGEFADIMLGY-YGASPADRDPKVVKLAEEQSGKKPI 418
Query: 705 --RPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDT 762
RP LPP + K + TD DV++ AL+PQV + R GP T
Sbjct: 419 TQRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHRAE-GPHSVALT 477
Query: 763 RIFLTGPKVGEEFEVKIQPP 782
L G+E + + P
Sbjct: 478 DAQLKAEAEGDEKSLAVAGP 497
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRG N +GY +Y D VV +F D S + GMDVFRVFD++N N+
Sbjct: 101 MLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHA 160
Query: 1029 XXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIK-VRILLSP 1076
I YT + ++ Y LA +L+ G + +K + LL P
Sbjct: 161 QGTICYT------ISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKP 203
>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit,
Met186ile
Length = 539
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 801 VRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860
V + + + + + RDAHQSL+ATR+ D++ + +S+E WGGAT+D +
Sbjct: 19 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADI--DAAGYWSVECWGGATYDSCI 76
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
RFL+E PWERL RK +PN QMLLRG N +GY +Y D
Sbjct: 77 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYND 116
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 123/324 (37%), Gaps = 25/324 (7%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKX-XXXXXXXXXXXXSGAGVASMIACXXXXXXXXXX 524
I D+A LLKP+ A +I AI++ +G S++
Sbjct: 192 IALXDIAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDT 251
Query: 525 XXXSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKS 584
SMS +V L+G+ T LD + +++ R Y FE T +
Sbjct: 252 AISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLV-- 309
Query: 585 GNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGD 644
+ ++ ++IPGG +N++ Q + G + ++V G VTPSS++VG
Sbjct: 310 -DTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGT 368
Query: 645 FAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG 704
A F N + E + + EF +G Y P KV+K G
Sbjct: 369 QAVF---NVMMGE----------YKRMTGEFADIMLGY-YGASPADRDPKVVKLAEEQSG 414
Query: 705 ------RPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVD 758
RP LPP + K + TD DV++ AL+PQV + R GP
Sbjct: 415 KKPITQRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHRAE-GPHS 473
Query: 759 KLDTRIFLTGPKVGEEFEVKIQPP 782
T L G+E + + P
Sbjct: 474 VALTDAQLKAEAEGDEKSLAVAGP 497
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRG N +GY +Y D VV +F D S + GMDVFRVFD++N N+
Sbjct: 101 MLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHA 160
Query: 1029 XXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI-KVRILLSP 1076
I YT + ++ Y LA +L+ G + + + LL P
Sbjct: 161 QGTICYT------ISPVHTVEGYVKLAGQLLDMGADSIALXDIAALLKP 203
>pdb|1RQH|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Pyruvic Acid
Length = 472
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 801 VRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860
V + + + + + RDAHQSL+ATR+ D++ + +S+E WGGAT+D +
Sbjct: 5 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADI--DAAGYWSVECWGGATYDSCI 62
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
RFL+E PWERL RK +PN QMLLRG N +GY +Y D
Sbjct: 63 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYND 102
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 24/289 (8%)
Query: 470 DMAGLLKPRAAKLLIGAIREKX-XXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXS 528
DMA LLKP+ A +I AI++ +G S++ S
Sbjct: 183 DMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS 242
Query: 529 MSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNAD 588
MS +V L+G+ T LD + +++ R Y FE T + +
Sbjct: 243 MSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLV---DTS 299
Query: 589 VYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQF 648
++ ++IPGG +N++ Q + G + ++V G VTPSS++VG A F
Sbjct: 300 IFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVF 359
Query: 649 MVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG---- 704
N + E + + EF +G Y P KV+K G
Sbjct: 360 ---NVMMGE----------YKRMTGEFADIMLGY-YGASPADRDPKVVKLAEEQSGKKPI 405
Query: 705 --RPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFR 751
RP LPP + K + TD DV++ AL+PQV + R
Sbjct: 406 TQRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHR 454
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRG N +GY +Y D VV +F D S + GMDVFRVFD++N N+
Sbjct: 87 MLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHA 146
Query: 1029 XXXISYT 1035
I YT
Sbjct: 147 QGTICYT 153
>pdb|1RR2|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To 2- Ketobutyric Acid
Length = 473
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query: 801 VRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860
V + + + + + RDAHQSL+ATR+ D++ + +S+E WGGAT+D +
Sbjct: 6 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADI--DAAGYWSVECWGGATYDSCI 63
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
RFL+E PWERL RK +PN QMLLRG N +GY +Y D
Sbjct: 64 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYND 103
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 24/289 (8%)
Query: 470 DMAGLLKPRAAKLLIGAIREKX-XXXXXXXXXXXXSGAGVASMIACXXXXXXXXXXXXXS 528
DMA LLKP+ A +I AI++ +G S++ S
Sbjct: 184 DMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS 243
Query: 529 MSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNAD 588
MS +V L+G+ T LD + +++ R Y FE T + +
Sbjct: 244 MSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLV---DTS 300
Query: 589 VYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQF 648
++ ++IPGG +N++ Q + G + ++V G VTPSS++VG A F
Sbjct: 301 IFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVF 360
Query: 649 MVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG---- 704
N + E + + EF +G Y P KV+K G
Sbjct: 361 ---NVMMGE----------YKRMTGEFADIMLGY-YGASPADRDPKVVKLAEEQSGKKPI 406
Query: 705 --RPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFR 751
RP LPP + K + TD DV++ AL+PQV + R
Sbjct: 407 TQRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHR 455
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 36/67 (53%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRG N +GY +Y D VV +F D S + GMDVFRVFD++N N+
Sbjct: 88 MLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHA 147
Query: 1029 XXXISYT 1035
I YT
Sbjct: 148 QGTICYT 154
>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
A59t
Length = 539
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query: 801 VRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860
V + + + + + RDAHQSL+ATR+ D++ + +S+E WGG T+D +
Sbjct: 19 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADI--DAAGYWSVECWGGTTYDSCI 76
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
RFL+E PWERL RK +PN QMLLRG N +GY +Y D
Sbjct: 77 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYND 116
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 123/324 (37%), Gaps = 25/324 (7%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKX-XXXXXXXXXXXXSGAGVASMIACXXXXXXXXXX 524
I DMA LLKP+ A +I AI++ +G S++
Sbjct: 192 IALXDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDT 251
Query: 525 XXXSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKS 584
SMS +V L+G+ T LD + +++ R Y FE T +
Sbjct: 252 AISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLV-- 309
Query: 585 GNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGD 644
+ ++ ++IPGG +N++ Q + G + ++V G VTPSS++VG
Sbjct: 310 -DTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGT 368
Query: 645 FAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG 704
A F N + E + + EF +G Y P KV+K G
Sbjct: 369 QAVF---NVMMGE----------YKRMTGEFADIMLGY-YGASPADRDPKVVKLAEEQSG 414
Query: 705 ------RPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVD 758
RP LPP + K + TD DV++ AL+PQV + R GP
Sbjct: 415 KKPITQRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHRAE-GPHS 473
Query: 759 KLDTRIFLTGPKVGEEFEVKIQPP 782
T L G+E + + P
Sbjct: 474 VALTDAQLKAEAEGDEKSLAVAGP 497
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILXXXXXXXXXXXX 1028
MLLRG N +GY +Y D VV +F D S + GMDVFRVFD++N N+
Sbjct: 101 MLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHA 160
Query: 1029 XXXISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI-KVRILLSP 1076
I YT + ++ Y LA +L+ G + + + LL P
Sbjct: 161 QGTICYT------ISPVHTVEGYVKLAGQLLDMGADSIALXDMAALLKP 203
>pdb|1RQB|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Length = 539
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 801 VRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860
V + + + + + RDAHQSL ATR D + + +S+E WGGAT+D +
Sbjct: 19 VSEPREVGITELVLRDAHQSLXATRXAXEDXVGACADI--DAAGYWSVECWGGATYDSCI 76
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPD 900
RFL+E PWERL RK PN Q LLRG N +GY +Y D
Sbjct: 77 RFLNEDPWERLRTFRKLXPNSRLQXLLRGQNLLGYRHYND 116
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 107/293 (36%), Gaps = 24/293 (8%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREK-XXXXXXXXXXXXXSGAGVASMIACXXXXXXXXXX 524
I D A LLKP+ A +I AI++ +G S+
Sbjct: 192 IALXDXAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLXKAIEAGVDVVDT 251
Query: 525 XXXSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKS 584
S S +V L+G+ T LD + +++ R Y FE T +
Sbjct: 252 AISSXSLGPGHNPTESVAEXLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLV-- 309
Query: 585 GNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGD 644
+ ++ ++IPGG +N + Q + G + ++V G VTPSS++VG
Sbjct: 310 -DTSIFKSQIPGGXLSNXESQLRAQGAEDKXDEVXAEVPRVRKAAGFPPLVTPSSQIVGT 368
Query: 645 FAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG 704
A F V + + EF +G Y P KV+K G
Sbjct: 369 QAVFNVXXG-------------EYKRXTGEFADIXLGY-YGASPADRDPKVVKLAEEQSG 414
Query: 705 ------RPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFR 751
RP LPP + K + TD DV++ AL+PQV + R
Sbjct: 415 KKPITQRPADLLPPEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHR 467
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 970 LLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLN 1009
LLRG N +GY +Y D VV +F D S + G DVFRVFD+ N
Sbjct: 102 LLRGQNLLGYRHYNDEVVDRFVDKSAENGXDVFRVFDAXN 141
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 133/333 (39%), Gaps = 40/333 (12%)
Query: 26 NIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQ 85
++ EI+R+ K V + G L A+A+ AG+ IG SP + + D+ +
Sbjct: 625 DVLEIVRIEKPKGVIVQYGGQTPLK----LARALEAAGVPVIGTSPDAIDRAEDRERFQH 680
Query: 86 AAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENF 145
A E A+E + G P++ +A+Y D+ F
Sbjct: 681 AV--ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYF 738
Query: 146 QRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD--------------KAGNVVHLYER 191
Q A S + A + ++ F++ ++V + D +AG VH +
Sbjct: 739 QTAVSVSNDA----PVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAG--VHSGDS 792
Query: 192 DCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFI 251
CS+ PA L +++ M KLA + V+F ++ + Y I
Sbjct: 793 ACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLI 840
Query: 252 EVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDP 311
EVN R + TGV L + RV G +L E G+T+E I P ++++ V +
Sbjct: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPY-YSVKEVVLPFNK 899
Query: 312 AKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGA 344
P G E+ +GE MG+ A AFA A
Sbjct: 900 FPGVDPLLGP-EMRSTGEVMGVGRTFAEAFAKA 931
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 132/333 (39%), Gaps = 40/333 (12%)
Query: 26 NIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQ 85
++ EI+R+ K V + G L A+A+ AG+ IG SP + + D+ +
Sbjct: 625 DVLEIVRIEKPKGVIVQYGGQTPLK----LARALEAAGVPVIGTSPDAIDRAEDRERFQH 680
Query: 86 AAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENF 145
A E A+E + G P++ + +Y D+ F
Sbjct: 681 AV--ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYF 738
Query: 146 QRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD--------------KAGNVVHLYER 191
Q A S + A + ++ F++ ++V + D +AG VH +
Sbjct: 739 QTAVSVSNDA----PVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAG--VHSGDS 792
Query: 192 DCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFI 251
CS+ PA L +++ M KLA + V+F ++ + Y I
Sbjct: 793 ACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLI 840
Query: 252 EVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDP 311
EVN R + TGV L + RV G +L E G+T+E I P ++++ V +
Sbjct: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPY-YSVKEVVLPFNK 899
Query: 312 AKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGA 344
P G E+ +GE MG+ A AFA A
Sbjct: 900 FPGVDPLLGP-EMRSTGEVMGVGRTFAEAFAKA 931
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 132/333 (39%), Gaps = 40/333 (12%)
Query: 26 NIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQ 85
++ EI+R+ K V + G L A+A+ AG+ IG SP + + D+ +
Sbjct: 625 DVLEIVRIEKPKGVIVQYGGQTPLK----LARALEAAGVPVIGTSPDAIDRAEDRERFQH 680
Query: 86 AAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXKMEDVEENF 145
A E A+E + G P++ + +Y D+ F
Sbjct: 681 AV--ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYF 738
Query: 146 QRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD--------------KAGNVVHLYER 191
Q A S + A + ++ F++ ++V + D +AG VH +
Sbjct: 739 QTAVSVSNDA----PVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAG--VHSGDS 792
Query: 192 DCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFI 251
CS+ PA L +++ M KLA + V+F ++ + Y I
Sbjct: 793 ACSL-----------PAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAV-KNNEVYLI 840
Query: 252 EVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDP 311
EVN R + TGV L + RV G +L E G+T+E I P ++++ V +
Sbjct: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPY-YSVKEVVLPFNK 899
Query: 312 AKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGA 344
P G E+ +GE MG+ A AFA A
Sbjct: 900 FPGVDPLLGP-EMRSTGEVMGVGRTFAEAFAKA 931
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
V APMPG V+ + V+VGD+V G L+VL AMKME + +P GVVK I
Sbjct: 8 VSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRI 56
>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa
Carboxylase Alpha Subunit
Length = 108
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 78 GDKVAARQAAIDSXXXXXXXXXXXXXXXEEAMEFCLKYGLPVIFKAAYXXXXXXXXXXXK 137
GDK+ ++ A + EEA+ + G PV+ KA+
Sbjct: 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 138 MEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHI 173
E+ + F+ +S EA ++FG+ + IEKFI+ PRHI
Sbjct: 67 DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102
>pdb|2EJM|A Chain A, Solution Structure Of Ruh-072, An Apo-Biotnyl Domain Form
Human Acetyl Coenzyme A Carboxylase
Length = 99
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
APM G++ ++ VK GDKV+ G +L+V+ AMKME +++P G VK +
Sbjct: 19 APMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKV 65
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
A K+ G++ AP+ G+V +I VK GD V+ G ++VL AMKME + AP G V+ +
Sbjct: 3 AGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV 59
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
A K+ G++ AP+ G+V +I VK GD V+ G ++VL AMKME + AP G V+ +
Sbjct: 10 AGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV 66
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
V M G++ ++ VK GD++EKG + +L +MKME+ + A G+VK +
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEV 50
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
+PMPG V+ + VK GD V +G + V+ AMKM+ + A G VKS+
Sbjct: 30 SPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSV 76
>pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr,
Minimized Average Structure
pdb|1IYV|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
Structures
Length = 79
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDASM 969
G V+E+ VK GD +E LVVL + K M V +P GVVKS+ +
Sbjct: 13 GEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59
>pdb|4E4T|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
pdb|4E4T|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase, Atpase Subunit From Burkholderia Ambifaria
Length = 419
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 3/146 (2%)
Query: 141 VEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQ-LLGDKAGNVVHLYERDCSVQRRH 199
V + R + +A AA G +EK + P EV L+ A + +V
Sbjct: 189 VRVSTAREARDAHAALGGVPCVLEKRL--PLKYEVSALIARGADGRSAAFPLAQNVHHNG 246
Query: 200 QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQV 259
+ I PAP D + AV++A +GY VEF E G F E+ R
Sbjct: 247 ILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHN 306
Query: 260 EHTVTEEITGVDLVQSQIRVAEGMTL 285
T + + Q+R M L
Sbjct: 307 SGHYTVDACATSQFEQQVRAMTRMPL 332
>pdb|1LBM|A Chain A, Crystal Structure Of Phosphoribosyl Anthranilate Isomerase
(Prai) In Complex With Reduced
1-(O-Carboxyphenylamino)-1-Deoxyribulose 5- Phosphate
(Rcdrp)
pdb|1NSJ|A Chain A, Crystal Structure Of Phosphoribosyl Anthranilate Isomerase
From Thermotoga Maritima
Length = 205
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 889 GANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEK---GAALVVL 945
GA+AVG+ YP ++ +I P+ A+ ++ +P V + V V ++ EK A+ V L
Sbjct: 22 GADAVGFVFYPKSKRYISPEDAR----RISVELPPFVFRVGVFVNEEPEKILDVASYVQL 77
Query: 946 SAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPD 984
+A+++ + P++ K + ++++ AVG +N D
Sbjct: 78 NAVQLHG--EEPIELCRKIAERILVIK---AVGVSNERD 111
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDASM 969
+V P V E+ VKVGDKV +L+ + K M V AP GVVK + ++
Sbjct: 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNV 57
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 925 VMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
V E+ VKVGDKV +L+ + K M V AP GVVK +
Sbjct: 17 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 608 SLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQN 652
++G+ E E VK+ R L++ D+I + P V DFA F+++
Sbjct: 79 NMGIEEQVEQVKRVKRAERLIVEDVITIAPDETV--DFALFLMEK 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,689,590
Number of Sequences: 62578
Number of extensions: 1144469
Number of successful extensions: 3182
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2851
Number of HSP's gapped (non-prelim): 167
length of query: 1080
length of database: 14,973,337
effective HSP length: 109
effective length of query: 971
effective length of database: 8,152,335
effective search space: 7915917285
effective search space used: 7915917285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)