Query psy3968
Match_columns 1080
No_of_seqs 989 out of 6061
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:55:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1038 PycA Pyruvate carboxyl 100.0 6E-192 1E-196 1627.2 85.9 899 1-981 43-1148(1149)
2 KOG0369|consensus 100.0 1E-184 2E-189 1536.0 80.1 905 1-982 69-1176(1176)
3 TIGR01235 pyruv_carbox pyruvat 100.0 2E-171 5E-176 1615.3 96.5 899 1-981 35-1143(1143)
4 PRK12999 pyruvate carboxylase; 100.0 7E-166 2E-170 1574.7 98.1 898 1-981 41-1145(1146)
5 COG4770 Acetyl/propionyl-CoA c 100.0 5.4E-97 1E-101 830.6 52.1 411 1-416 38-449 (645)
6 PRK14042 pyruvate carboxylase 100.0 6.2E-96 1E-100 869.5 41.6 422 462-981 166-594 (596)
7 KOG0238|consensus 100.0 8.3E-93 1.8E-97 782.0 48.3 415 1-420 34-450 (670)
8 TIGR01108 oadA oxaloacetate de 100.0 2E-91 4.4E-96 836.3 37.8 426 451-977 149-582 (582)
9 PRK09282 pyruvate carboxylase 100.0 1.2E-90 2.6E-95 832.3 42.7 420 462-981 166-591 (592)
10 PRK14040 oxaloacetate decarbox 100.0 2.1E-89 4.5E-94 819.2 40.0 423 451-980 155-592 (593)
11 COG5016 Pyruvate/oxaloacetate 100.0 1.6E-79 3.4E-84 665.9 17.7 326 413-753 112-449 (472)
12 PRK12581 oxaloacetate decarbox 100.0 4.1E-75 8.8E-80 670.5 27.4 292 453-759 165-461 (468)
13 COG0439 AccC Biotin carboxylas 100.0 3.3E-72 7.2E-77 645.7 43.0 407 2-413 39-445 (449)
14 PRK12330 oxaloacetate decarbox 100.0 4E-74 8.7E-79 668.1 27.0 293 449-754 153-451 (499)
15 PRK14041 oxaloacetate decarbox 100.0 2.8E-74 6.1E-79 669.3 25.2 290 449-753 151-442 (467)
16 PRK12331 oxaloacetate decarbox 100.0 8.1E-74 1.8E-78 665.5 26.5 292 449-753 152-446 (448)
17 PRK08654 pyruvate carboxylase 100.0 3E-71 6.4E-76 659.9 47.6 411 1-417 38-448 (499)
18 PRK07178 pyruvate carboxylase 100.0 1.9E-67 4.1E-72 627.4 49.0 420 1-426 38-457 (472)
19 PRK08463 acetyl-CoA carboxylas 100.0 9E-66 1.9E-70 613.5 48.3 411 1-417 38-450 (478)
20 PRK12833 acetyl-CoA carboxylas 100.0 1.4E-65 3.1E-70 610.5 47.8 406 1-412 41-447 (467)
21 TIGR02712 urea_carbox urea car 100.0 4.6E-63 1E-67 635.3 64.9 403 2-412 38-443 (1201)
22 PRK05586 biotin carboxylase; V 100.0 6.4E-63 1.4E-67 586.3 47.2 407 1-412 38-444 (447)
23 TIGR00514 accC acetyl-CoA carb 100.0 5E-62 1.1E-66 579.3 49.2 407 1-412 38-444 (449)
24 PRK08462 biotin carboxylase; V 100.0 4.2E-60 9.2E-65 562.7 48.4 405 1-412 40-444 (445)
25 KOG0368|consensus 100.0 1.5E-60 3.3E-65 569.1 43.0 405 1-411 101-549 (2196)
26 PRK08591 acetyl-CoA carboxylas 100.0 1.5E-59 3.4E-64 559.2 48.0 406 2-412 39-444 (451)
27 PF02436 PYC_OADA: Conserved c 100.0 4.1E-56 9E-61 460.7 9.6 195 589-800 1-196 (196)
28 PRK06111 acetyl-CoA carboxylas 100.0 1.7E-51 3.7E-56 490.2 48.0 405 2-412 39-443 (450)
29 COG1038 PycA Pyruvate carboxyl 100.0 1.8E-52 4E-57 480.8 5.6 214 780-1077 509-723 (1149)
30 COG5016 Pyruvate/oxaloacetate 100.0 2.9E-51 6.3E-56 445.6 3.5 182 804-1077 3-185 (472)
31 KOG0369|consensus 100.0 8.9E-49 1.9E-53 441.3 6.7 215 779-1077 532-747 (1176)
32 TIGR01235 pyruv_carbox pyruvat 100.0 4.5E-47 9.7E-52 482.5 7.6 214 781-1078 505-719 (1143)
33 PF02786 CPSase_L_D2: Carbamoy 100.0 1.6E-37 3.4E-42 329.9 25.4 209 79-287 1-210 (211)
34 PRK14042 pyruvate carboxylase 100.0 9.5E-40 2.1E-44 389.3 7.0 181 805-1077 2-183 (596)
35 PLN02735 carbamoyl-phosphate s 100.0 2.4E-36 5.2E-41 387.6 35.4 356 2-375 622-995 (1102)
36 PRK12581 oxaloacetate decarbox 100.0 6.6E-39 1.4E-43 370.4 6.8 183 803-1077 9-192 (468)
37 PRK12999 pyruvate carboxylase; 100.0 1.4E-38 3E-43 407.4 7.8 213 781-1077 507-720 (1146)
38 PLN02257 phosphoribosylamine-- 100.0 1E-34 2.2E-39 340.9 38.7 355 22-389 46-422 (434)
39 PRK13790 phosphoribosylamine-- 100.0 1.3E-34 2.7E-39 336.4 37.7 345 23-389 12-373 (379)
40 PRK13789 phosphoribosylamine-- 100.0 2.2E-34 4.9E-39 337.9 37.4 351 22-389 52-423 (426)
41 TIGR01142 purT phosphoribosylg 100.0 7.8E-34 1.7E-38 331.3 39.1 347 1-381 33-380 (380)
42 PRK00885 phosphoribosylamine-- 100.0 1.3E-33 2.7E-38 333.5 38.2 347 22-389 46-415 (420)
43 PRK12330 oxaloacetate decarbox 100.0 3.9E-37 8.6E-42 358.8 6.3 182 804-1077 2-184 (499)
44 TIGR01369 CPSaseII_lrg carbamo 100.0 1.1E-33 2.5E-38 364.6 38.8 355 3-398 55-427 (1050)
45 PRK09288 purT phosphoribosylgl 100.0 6.2E-33 1.3E-37 325.4 38.7 347 2-382 47-394 (395)
46 PLN02948 phosphoribosylaminoim 100.0 4.5E-33 9.8E-38 336.7 38.1 343 2-381 57-402 (577)
47 PLN02735 carbamoyl-phosphate s 100.0 9.8E-33 2.1E-37 354.4 38.6 356 4-398 73-448 (1102)
48 TIGR00877 purD phosphoribosyla 100.0 2E-32 4.3E-37 323.9 38.2 348 22-389 48-419 (423)
49 PRK06395 phosphoribosylamine-- 100.0 2.3E-32 5E-37 321.7 37.2 347 23-389 50-419 (435)
50 PRK06019 phosphoribosylaminoim 100.0 5.3E-32 1.1E-36 314.3 38.0 329 2-376 37-366 (372)
51 PRK05784 phosphoribosylamine-- 100.0 3.2E-31 6.9E-36 314.2 37.6 354 23-389 54-443 (486)
52 TIGR01161 purK phosphoribosyla 100.0 9.6E-31 2.1E-35 302.0 36.2 262 1-287 33-295 (352)
53 PRK02186 argininosuccinate lya 100.0 1.4E-30 3.1E-35 332.1 41.1 330 23-381 54-395 (887)
54 COG0151 PurD Phosphoribosylami 100.0 2.2E-30 4.7E-35 289.0 34.6 349 25-389 50-420 (428)
55 PRK14040 oxaloacetate decarbox 100.0 1.1E-33 2.5E-38 339.4 7.1 182 804-1077 2-184 (593)
56 PRK05294 carB carbamoyl phosph 100.0 2.2E-30 4.8E-35 335.5 37.6 357 4-398 57-429 (1066)
57 PRK05294 carB carbamoyl phosph 100.0 1.3E-30 2.9E-35 337.5 34.4 299 26-334 617-916 (1066)
58 PRK12815 carB carbamoyl phosph 100.0 3.8E-30 8.2E-35 332.1 38.2 352 6-398 59-429 (1068)
59 TIGR01369 CPSaseII_lrg carbamo 100.0 2.4E-30 5.2E-35 333.9 36.2 300 25-335 616-917 (1050)
60 PRK07206 hypothetical protein; 100.0 2.8E-30 6.1E-35 305.0 33.1 331 24-375 56-405 (416)
61 PRK12815 carB carbamoyl phosph 100.0 4.8E-30 1E-34 331.2 37.9 325 3-375 604-930 (1068)
62 COG0458 CarB Carbamoylphosphat 100.0 2E-29 4.3E-34 281.1 30.8 334 6-377 47-389 (400)
63 PRK12767 carbamoyl phosphate s 100.0 2.3E-28 4.9E-33 279.4 31.4 259 2-286 37-298 (326)
64 PRK09282 pyruvate carboxylase 100.0 2.2E-31 4.7E-36 320.7 6.2 181 805-1077 2-183 (592)
65 PRK06524 biotin carboxylase-li 100.0 7.3E-28 1.6E-32 279.4 32.5 247 28-286 94-356 (493)
66 PF15632 ATPgrasp_Ter: ATP-gra 100.0 3.4E-28 7.5E-33 272.1 28.6 262 2-287 35-310 (329)
67 COG0027 PurT Formate-dependent 100.0 2.6E-27 5.6E-32 251.1 29.8 347 1-382 46-394 (394)
68 PRK14041 oxaloacetate decarbox 100.0 1.7E-30 3.7E-35 303.1 5.8 180 806-1077 2-182 (467)
69 PRK12331 oxaloacetate decarbox 100.0 4.7E-30 1E-34 299.4 6.7 181 805-1077 2-183 (448)
70 TIGR01108 oadA oxaloacetate de 100.0 2.2E-29 4.8E-34 302.4 5.8 177 809-1077 1-178 (582)
71 PRK14569 D-alanyl-alanine synt 100.0 2.2E-26 4.8E-31 259.1 28.0 236 31-280 49-292 (296)
72 COG0026 PurK Phosphoribosylami 99.9 2.3E-25 5.1E-30 245.7 33.5 332 1-377 35-367 (375)
73 PRK12344 putative alpha-isopro 99.9 1.1E-27 2.3E-32 286.3 16.4 236 402-651 100-385 (524)
74 PLN02321 2-isopropylmalate syn 99.9 1.8E-27 3.8E-32 285.6 16.9 224 402-628 184-459 (632)
75 PLN03228 methylthioalkylmalate 99.9 1.6E-27 3.4E-32 280.3 15.5 187 440-628 228-458 (503)
76 PRK01966 ddl D-alanyl-alanine 99.9 3.3E-26 7.1E-31 261.9 25.7 231 38-279 81-327 (333)
77 PRK00915 2-isopropylmalate syn 99.9 2.5E-27 5.4E-32 283.5 16.0 254 368-628 58-363 (513)
78 TIGR02660 nifV_homocitr homoci 99.9 4.2E-27 9E-32 271.5 16.6 255 365-628 52-348 (365)
79 TIGR00973 leuA_bact 2-isopropy 99.9 5.8E-27 1.3E-31 278.4 15.9 255 367-628 54-360 (494)
80 PRK11858 aksA trans-homoaconit 99.9 8.7E-27 1.9E-31 269.6 16.9 186 440-628 134-351 (378)
81 PLN02746 hydroxymethylglutaryl 99.9 7.8E-27 1.7E-31 263.0 13.6 133 440-572 186-326 (347)
82 PRK14568 vanB D-alanine--D-lac 99.9 2.6E-25 5.6E-30 255.6 26.2 229 37-277 89-334 (343)
83 PRK01372 ddl D-alanine--D-alan 99.9 4.9E-25 1.1E-29 249.5 27.5 241 29-279 47-296 (304)
84 PRK14570 D-alanyl-alanine synt 99.9 5.7E-25 1.2E-29 253.2 27.7 234 37-278 86-341 (364)
85 PRK05692 hydroxymethylglutaryl 99.9 1.4E-26 2.9E-31 257.6 13.7 133 440-572 144-284 (287)
86 PRK14572 D-alanyl-alanine synt 99.9 8.1E-25 1.7E-29 251.8 26.9 232 37-279 87-341 (347)
87 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.1E-24 2.4E-29 247.9 26.8 234 37-280 62-312 (315)
88 PRK09389 (R)-citramalate synth 99.9 5.9E-26 1.3E-30 269.1 16.3 221 403-627 89-348 (488)
89 TIGR00977 LeuA_rel 2-isopropyl 99.9 5.8E-26 1.3E-30 270.8 16.1 225 402-631 96-370 (526)
90 COG0119 LeuA Isopropylmalate/h 99.9 4.2E-26 9.2E-31 262.7 14.0 247 379-629 70-358 (409)
91 TIGR02090 LEU1_arch isopropylm 99.9 6.1E-26 1.3E-30 261.2 15.1 181 443-628 133-347 (363)
92 cd07938 DRE_TIM_HMGL 3-hydroxy 99.9 3.9E-26 8.4E-31 252.8 12.3 128 440-567 138-273 (274)
93 cd07945 DRE_TIM_CMS Leptospira 99.9 4.6E-26 1E-30 252.5 12.8 136 440-577 138-276 (280)
94 KOG0237|consensus 99.9 7E-24 1.5E-28 239.5 29.3 350 24-389 54-424 (788)
95 TIGR00970 leuA_yeast 2-isoprop 99.9 3E-25 6.6E-30 266.7 14.4 206 363-571 76-315 (564)
96 PRK06849 hypothetical protein; 99.9 2.9E-24 6.2E-29 251.5 21.9 241 3-265 43-284 (389)
97 PRK03739 2-isopropylmalate syn 99.9 6.2E-25 1.3E-29 263.4 15.5 209 361-572 77-317 (552)
98 cd07939 DRE_TIM_NifV Streptomy 99.9 3.4E-25 7.3E-30 244.6 11.8 128 440-568 128-258 (259)
99 cd07940 DRE_TIM_IPMS 2-isoprop 99.9 2.5E-25 5.4E-30 246.9 10.4 128 440-567 132-267 (268)
100 PRK14571 D-alanyl-alanine synt 99.9 4E-23 8.8E-28 233.3 28.3 223 37-275 52-287 (299)
101 cd07937 DRE_TIM_PC_TC_5S Pyruv 99.9 4.1E-25 8.9E-30 245.3 10.1 131 445-576 143-275 (275)
102 PRK14573 bifunctional D-alanyl 99.9 5.4E-23 1.2E-27 261.1 29.1 233 37-278 525-781 (809)
103 PF02785 Biotin_carb_C: Biotin 99.9 5E-25 1.1E-29 207.2 7.2 107 303-410 1-107 (107)
104 PRK14847 hypothetical protein; 99.9 4.5E-24 9.8E-29 237.6 14.2 215 360-578 78-325 (333)
105 cd07943 DRE_TIM_HOA 4-hydroxy- 99.9 3.4E-24 7.3E-29 237.2 12.5 123 446-568 136-260 (263)
106 COG2232 Predicted ATP-dependen 99.9 8.7E-23 1.9E-27 218.6 22.3 298 24-379 67-373 (389)
107 KOG2368|consensus 99.9 1.5E-25 3.4E-30 226.7 1.1 179 375-571 107-297 (316)
108 cd07942 DRE_TIM_LeuA Mycobacte 99.9 2.1E-24 4.5E-29 238.5 10.0 130 439-568 140-284 (284)
109 PF13535 ATP-grasp_4: ATP-gras 99.9 3.6E-23 7.8E-28 215.9 17.7 177 76-261 1-183 (184)
110 smart00878 Biotin_carb_C Bioti 99.9 8.3E-24 1.8E-28 199.4 9.4 107 303-410 1-107 (107)
111 KOG2367|consensus 99.9 3.4E-23 7.4E-28 230.1 13.3 218 357-577 101-338 (560)
112 cd07947 DRE_TIM_Re_CS Clostrid 99.9 2.8E-23 6.2E-28 229.5 10.8 106 462-567 161-278 (279)
113 cd07944 DRE_TIM_HOA_like 4-hyd 99.9 1.8E-23 4E-28 230.7 8.8 112 462-574 150-264 (266)
114 cd07948 DRE_TIM_HCS Saccharomy 99.9 3.9E-23 8.5E-28 227.0 10.3 117 450-567 140-261 (262)
115 TIGR00768 rimK_fam alpha-L-glu 99.9 1.2E-21 2.6E-26 218.5 22.4 227 38-279 48-276 (277)
116 KOG0370|consensus 99.9 1.7E-21 3.7E-26 228.6 22.3 336 25-375 980-1319(1435)
117 cd03174 DRE_TIM_metallolyase D 99.9 1.1E-22 2.4E-27 225.6 10.8 120 448-567 143-264 (265)
118 cd07941 DRE_TIM_LeuA3 Desulfob 99.9 7.4E-23 1.6E-27 227.2 9.0 106 462-567 163-272 (273)
119 PRK08195 4-hyroxy-2-oxovalerat 99.9 1.3E-22 2.9E-27 230.5 10.4 121 449-569 142-265 (337)
120 TIGR02144 LysX_arch Lysine bio 99.9 1.5E-20 3.4E-25 210.2 25.6 229 38-282 47-277 (280)
121 PRK10446 ribosomal protein S6 99.9 1E-20 2.2E-25 213.8 23.4 224 37-283 56-289 (300)
122 TIGR03217 4OH_2_O_val_ald 4-hy 99.9 2.6E-22 5.7E-27 227.5 9.3 107 462-568 155-263 (333)
123 PF00682 HMGL-like: HMGL-like 99.9 9.1E-23 2E-27 222.7 4.4 187 360-549 38-237 (237)
124 PF07478 Dala_Dala_lig_C: D-al 99.8 3.6E-20 7.8E-25 196.6 18.6 186 86-279 1-201 (203)
125 PF02222 ATP-grasp: ATP-grasp 99.8 7.9E-20 1.7E-24 187.8 20.1 167 87-265 1-169 (172)
126 PRK13277 5-formaminoimidazole- 99.8 1.9E-19 4.2E-24 201.3 24.8 255 6-286 59-349 (366)
127 PRK13278 purP 5-formaminoimida 99.8 2E-19 4.2E-24 204.8 25.3 228 5-260 58-315 (358)
128 KOG0370|consensus 99.8 4.2E-21 9.2E-26 225.2 9.4 335 6-384 429-776 (1435)
129 COG1181 DdlA D-alanine-D-alani 99.8 1.6E-18 3.5E-23 194.8 25.3 233 37-279 60-312 (317)
130 PF01071 GARS_A: Phosphoribosy 99.8 3.7E-18 7.9E-23 177.1 18.8 176 78-259 1-191 (194)
131 PRK14016 cyanophycin synthetas 99.8 1.5E-17 3.3E-22 207.3 24.2 250 2-281 146-472 (727)
132 cd07937 DRE_TIM_PC_TC_5S Pyruv 99.8 1.9E-19 4.2E-24 200.0 5.5 177 809-1077 1-178 (275)
133 PF02655 ATP-grasp_3: ATP-gras 99.8 2.9E-18 6.4E-23 175.9 12.8 158 77-260 1-161 (161)
134 TIGR03103 trio_acet_GNAT GNAT- 99.8 2.9E-18 6.3E-23 207.4 14.9 248 9-280 227-540 (547)
135 COG0511 AccB Biotin carboxyl c 99.8 1.8E-18 4E-23 171.9 9.5 69 913-981 69-139 (140)
136 COG0189 RimK Glutathione synth 99.7 6E-16 1.3E-20 174.5 23.0 228 37-280 77-311 (318)
137 PF08443 RimK: RimK-like ATP-g 99.7 1.6E-16 3.5E-21 167.6 15.3 183 77-279 1-189 (190)
138 COG1821 Predicted ATP-utilizin 99.6 1.1E-14 2.3E-19 151.8 18.5 207 38-283 73-282 (307)
139 PRK06549 acetyl-CoA carboxylas 99.6 3.9E-15 8.6E-20 144.7 12.8 68 913-980 60-129 (130)
140 COG3919 Predicted ATP-grasp en 99.6 5.2E-15 1.1E-19 156.4 12.4 238 27-283 60-313 (415)
141 PRK05641 putative acetyl-CoA c 99.6 7.1E-15 1.5E-19 147.4 12.6 69 913-981 83-153 (153)
142 PRK05889 putative acetyl-CoA c 99.6 7.5E-15 1.6E-19 129.3 9.1 66 916-981 4-71 (71)
143 TIGR02146 LysS_fung_arch homoc 99.6 4.8E-14 1E-18 162.7 17.5 160 464-626 154-343 (344)
144 TIGR02068 cya_phycin_syn cyano 99.6 1.4E-13 2.9E-18 175.4 23.1 200 69-281 203-471 (864)
145 PRK12458 glutathione synthetas 99.6 2.5E-13 5.4E-18 155.5 21.8 220 38-282 79-323 (338)
146 TIGR01435 glu_cys_lig_rel glut 99.5 1.7E-13 3.7E-18 167.8 20.8 198 69-279 465-735 (737)
147 PRK02471 bifunctional glutamat 99.5 3.1E-13 6.7E-18 168.3 19.9 241 25-279 432-749 (752)
148 PRK06748 hypothetical protein; 99.5 7.8E-14 1.7E-18 124.5 8.9 66 916-981 6-74 (83)
149 PRK08225 acetyl-CoA carboxylas 99.5 1.4E-13 3E-18 121.0 9.1 67 915-981 2-70 (70)
150 PF00364 Biotin_lipoyl: Biotin 99.5 5.6E-14 1.2E-18 124.7 6.7 65 916-980 2-74 (74)
151 TIGR00531 BCCP acetyl-CoA carb 99.4 2E-13 4.4E-18 138.2 9.1 68 914-981 80-156 (156)
152 PLN02941 inositol-tetrakisphos 99.4 1.2E-11 2.7E-16 139.4 22.2 211 28-259 39-306 (328)
153 cd07943 DRE_TIM_HOA 4-hydroxy- 99.4 2.3E-13 5.1E-18 150.8 8.0 82 989-1078 89-171 (263)
154 TIGR01380 glut_syn glutathione 99.4 1.7E-11 3.7E-16 139.3 22.7 219 38-280 78-308 (312)
155 PRK05246 glutathione synthetas 99.4 2.6E-11 5.6E-16 138.2 22.8 221 38-282 79-311 (316)
156 PLN02983 biotin carboxyl carri 99.4 1.6E-12 3.6E-17 137.8 10.0 71 911-981 194-273 (274)
157 PRK06302 acetyl-CoA carboxylas 99.4 1.3E-12 2.9E-17 132.3 8.8 69 913-981 78-155 (155)
158 PRK05692 hydroxymethylglutaryl 99.3 2.5E-12 5.4E-17 143.6 9.5 85 991-1077 85-184 (287)
159 TIGR03217 4OH_2_O_val_ald 4-hy 99.3 2.8E-12 6.1E-17 145.9 8.0 81 989-1077 91-172 (333)
160 TIGR02291 rimK_rel_E_lig alpha 99.3 9.2E-11 2E-15 131.5 19.9 203 69-280 27-292 (317)
161 PRK07051 hypothetical protein; 99.3 5.8E-12 1.3E-16 113.5 7.9 67 915-981 4-79 (80)
162 PRK08195 4-hyroxy-2-oxovalerat 99.3 4.4E-12 9.6E-17 144.7 8.5 81 989-1077 92-173 (337)
163 PRK05704 dihydrolipoamide succ 99.2 4.2E-11 9.2E-16 139.7 9.2 91 922-1012 16-141 (407)
164 cd07944 DRE_TIM_HOA_like 4-hyd 99.2 2.4E-11 5.3E-16 134.6 6.9 81 989-1077 86-167 (266)
165 COG1759 5-formaminoimidazole-4 99.2 1.3E-09 2.9E-14 117.8 19.4 234 7-263 60-321 (361)
166 cd06850 biotinyl_domain The bi 99.2 1.1E-10 2.4E-15 101.0 8.5 65 916-980 1-67 (67)
167 PF00289 CPSase_L_chain: Carba 99.1 6.1E-11 1.3E-15 113.2 6.7 73 1-74 38-110 (110)
168 TIGR01347 sucB 2-oxoglutarate 99.1 3.3E-10 7.2E-15 131.9 9.3 87 922-1008 14-135 (403)
169 cd07940 DRE_TIM_IPMS 2-isoprop 99.0 3.3E-10 7.2E-15 126.1 7.6 79 991-1077 75-172 (268)
170 PLN02226 2-oxoglutarate dehydr 99.0 6.2E-10 1.3E-14 129.9 8.5 60 922-981 105-166 (463)
171 cd06663 Biotinyl_lipoyl_domain 99.0 1.7E-09 3.7E-14 95.7 8.4 59 922-980 13-73 (73)
172 COG0508 AceF Pyruvate/2-oxoglu 99.0 9.1E-10 2E-14 128.5 8.1 85 921-1005 14-134 (404)
173 cd07938 DRE_TIM_HMGL 3-hydroxy 99.0 1.6E-09 3.5E-14 120.5 9.1 86 990-1077 78-178 (274)
174 PTZ00144 dihydrolipoamide succ 98.9 1.5E-09 3.2E-14 126.0 8.4 60 922-981 58-119 (418)
175 PLN02528 2-oxoisovalerate dehy 98.9 2.7E-09 5.8E-14 125.2 10.0 85 923-1007 13-133 (416)
176 PRK14875 acetoin dehydrogenase 98.9 2.2E-09 4.8E-14 124.7 8.0 62 921-982 15-78 (371)
177 PRK11854 aceF pyruvate dehydro 98.9 2.4E-09 5.3E-14 132.2 8.6 62 920-981 216-279 (633)
178 cd03174 DRE_TIM_metallolyase D 98.9 2E-09 4.3E-14 119.6 5.9 84 988-1077 77-175 (265)
179 PF14398 ATPgrasp_YheCD: YheC/ 98.9 8.9E-08 1.9E-12 106.1 18.2 184 60-259 5-235 (262)
180 TIGR01348 PDHac_trf_long pyruv 98.8 5.4E-09 1.2E-13 126.8 8.9 60 922-981 129-190 (546)
181 cd07939 DRE_TIM_NifV Streptomy 98.8 4E-09 8.6E-14 116.9 6.4 79 991-1077 75-168 (259)
182 PRK12344 putative alpha-isopro 98.8 7.1E-09 1.5E-13 125.0 8.7 80 992-1077 92-187 (524)
183 TIGR02660 nifV_homocitr homoci 98.8 4.4E-09 9.5E-14 122.1 6.7 79 991-1077 78-171 (365)
184 PF14397 ATPgrasp_ST: Sugar-tr 98.8 2.3E-07 5E-12 104.0 20.2 186 69-257 16-258 (285)
185 TIGR02090 LEU1_arch isopropylm 98.8 6.1E-09 1.3E-13 120.7 6.7 81 989-1077 75-170 (363)
186 TIGR01016 sucCoAbeta succinyl- 98.8 2.5E-07 5.4E-12 108.6 20.1 175 79-255 4-216 (386)
187 PRK00696 sucC succinyl-CoA syn 98.8 1.9E-07 4E-12 109.7 19.0 109 79-189 4-125 (388)
188 PRK11858 aksA trans-homoaconit 98.8 1.1E-08 2.4E-13 119.2 8.3 81 989-1077 79-174 (378)
189 PRK11855 dihydrolipoamide acet 98.7 2.2E-08 4.8E-13 122.1 9.1 59 923-981 133-193 (547)
190 cd07941 DRE_TIM_LeuA3 Desulfob 98.7 5.8E-08 1.3E-12 108.4 9.6 82 990-1077 83-180 (273)
191 PRK11856 branched-chain alpha- 98.6 7.6E-08 1.7E-12 113.7 9.6 84 922-1005 16-146 (411)
192 PRK11854 aceF pyruvate dehydro 98.6 7.2E-08 1.6E-12 119.3 8.5 62 922-983 14-77 (633)
193 TIGR01349 PDHac_trf_mito pyruv 98.6 1.5E-07 3.2E-12 111.2 9.3 59 922-980 13-74 (435)
194 TIGR01348 PDHac_trf_long pyruv 98.5 2.6E-07 5.6E-12 112.3 9.1 65 918-982 9-75 (546)
195 PLN02744 dihydrolipoyllysine-r 98.5 2.9E-07 6.3E-12 110.1 9.0 58 923-980 127-187 (539)
196 TIGR02927 SucB_Actino 2-oxoglu 98.5 2.2E-07 4.7E-12 113.8 8.1 61 921-981 148-210 (590)
197 PLN02746 hydroxymethylglutaryl 98.4 4.9E-07 1.1E-11 103.1 8.9 84 992-1077 128-226 (347)
198 PRK09389 (R)-citramalate synth 98.3 1.2E-06 2.5E-11 105.2 7.3 79 991-1077 79-172 (488)
199 PF13549 ATP-grasp_5: ATP-gras 98.3 6.1E-06 1.3E-10 88.8 11.8 173 79-257 11-207 (222)
200 cd06849 lipoyl_domain Lipoyl d 98.2 4.1E-06 9E-11 72.6 8.2 62 919-980 11-74 (74)
201 PRK11855 dihydrolipoamide acet 98.2 2.3E-06 4.9E-11 104.7 8.3 60 922-981 15-76 (547)
202 PF00682 HMGL-like: HMGL-like 98.2 3.1E-06 6.8E-11 92.6 8.4 88 982-1077 64-166 (237)
203 KOG0558|consensus 98.2 9.3E-07 2E-11 96.1 3.9 95 923-1017 79-204 (474)
204 COG0045 SucC Succinyl-CoA synt 98.2 1.7E-05 3.7E-10 89.4 13.6 106 80-187 5-120 (387)
205 cd07948 DRE_TIM_HCS Saccharomy 98.2 4.5E-06 9.7E-11 92.5 8.7 79 991-1077 77-170 (262)
206 PLN00124 succinyl-CoA ligase [ 98.2 6.2E-05 1.3E-09 88.4 18.0 105 79-186 31-158 (422)
207 PF02955 GSH-S_ATP: Prokaryoti 98.1 1.3E-05 2.8E-10 82.8 10.9 144 94-256 12-161 (173)
208 PRK00915 2-isopropylmalate syn 98.1 4.6E-06 9.9E-11 101.0 8.4 83 987-1077 81-178 (513)
209 PRK11892 pyruvate dehydrogenas 98.1 4.6E-06 9.9E-11 99.1 8.1 60 923-982 17-79 (464)
210 PRK14046 malate--CoA ligase su 98.1 9.9E-05 2.1E-09 86.5 18.7 108 80-189 5-125 (392)
211 PRK13380 glycine cleavage syst 98.1 2.5E-06 5.3E-11 85.4 4.3 69 916-984 37-115 (144)
212 TIGR02927 SucB_Actino 2-oxoglu 98.0 7.1E-06 1.5E-10 100.7 7.8 61 922-982 16-78 (590)
213 KOG0557|consensus 97.9 1.5E-05 3.2E-10 91.2 7.1 63 919-981 48-114 (470)
214 PLN02235 ATP citrate (pro-S)-l 97.9 0.00034 7.4E-09 81.3 18.2 106 81-187 9-131 (423)
215 PF08442 ATP-grasp_2: ATP-gras 97.9 1.8E-05 3.8E-10 84.0 6.3 103 80-184 4-118 (202)
216 cd06848 GCS_H Glycine cleavage 97.9 2.2E-05 4.8E-10 73.5 5.6 52 917-968 23-75 (96)
217 TIGR03077 not_gcvH glycine cle 97.7 4.6E-05 9.9E-10 72.7 5.3 48 921-968 28-76 (110)
218 PF13533 Biotin_lipoyl_2: Biot 97.7 4.5E-05 9.8E-10 62.3 4.3 36 916-951 4-39 (50)
219 PF05770 Ins134_P3_kin: Inosit 97.7 0.00032 6.9E-09 78.8 12.0 174 62-258 77-290 (307)
220 KOG0559|consensus 97.6 2E-05 4.4E-10 86.5 0.6 59 923-981 87-147 (457)
221 PRK01202 glycine cleavage syst 97.5 9.6E-05 2.1E-09 72.6 5.1 69 917-985 31-109 (127)
222 PF14305 ATPgrasp_TupA: TupA-l 97.5 0.002 4.3E-08 70.6 15.9 179 72-260 13-221 (239)
223 TIGR00527 gcvH glycine cleavag 97.5 7.3E-05 1.6E-09 73.5 3.9 67 918-984 31-107 (127)
224 PRK00624 glycine cleavage syst 97.5 0.00019 4.2E-09 68.8 5.7 49 920-968 29-78 (114)
225 PLN02321 2-isopropylmalate syn 97.4 0.00039 8.4E-09 85.3 9.6 58 1013-1077 211-269 (632)
226 PRK09783 copper/silver efflux 97.4 0.00039 8.5E-09 82.3 8.6 73 913-985 122-245 (409)
227 PF02750 Synapsin_C: Synapsin, 97.3 0.0051 1.1E-07 63.6 14.2 166 69-255 1-176 (203)
228 PLN03228 methylthioalkylmalate 97.2 0.00044 9.5E-09 82.9 6.8 70 995-1077 198-268 (503)
229 TIGR00998 8a0101 efflux pump m 97.2 0.00053 1.2E-08 79.0 7.2 36 913-948 41-76 (334)
230 TIGR00977 LeuA_rel 2-isopropyl 97.2 0.0007 1.5E-08 82.2 8.2 60 1012-1077 122-183 (526)
231 PF03133 TTL: Tubulin-tyrosine 97.1 0.0026 5.6E-08 72.0 11.2 44 118-170 67-110 (292)
232 PRK10476 multidrug resistance 97.1 0.00093 2E-08 77.5 6.9 34 914-947 48-81 (346)
233 TIGR00973 leuA_bact 2-isopropy 97.1 0.00097 2.1E-08 80.5 7.2 58 1012-1077 117-175 (494)
234 PRK10559 p-hydroxybenzoic acid 97.0 0.001 2.2E-08 75.8 6.9 70 916-985 49-190 (310)
235 TIGR01730 RND_mfp RND family e 97.0 0.00081 1.8E-08 76.7 6.0 71 915-985 27-170 (322)
236 PRK03598 putative efflux pump 96.9 0.0015 3.2E-08 75.4 6.3 32 916-947 45-76 (331)
237 cd07947 DRE_TIM_Re_CS Clostrid 96.8 0.0037 8E-08 70.0 8.2 62 1013-1077 116-179 (279)
238 PRK15136 multidrug efflux syst 96.7 0.0025 5.3E-08 75.1 6.9 34 914-947 61-94 (390)
239 PRK09578 periplasmic multidrug 96.7 0.0022 4.8E-08 75.5 6.4 71 915-985 64-209 (385)
240 cd07945 DRE_TIM_CMS Leptospira 96.7 0.0037 8E-08 70.1 7.8 82 991-1077 80-176 (280)
241 KOG3895|consensus 96.4 0.02 4.4E-07 63.4 10.7 201 35-255 152-365 (488)
242 PRK15030 multidrug efflux syst 96.4 0.0049 1.1E-07 72.9 6.5 71 914-984 65-210 (397)
243 PRK11578 macrolide transporter 96.4 0.0053 1.1E-07 71.9 6.7 34 914-947 61-94 (370)
244 TIGR03309 matur_yqeB selenium- 96.4 0.0082 1.8E-07 65.1 7.4 63 915-982 165-228 (256)
245 PRK11556 multidrug efflux syst 96.4 0.0053 1.1E-07 73.0 6.6 72 913-984 86-232 (415)
246 PF06973 DUF1297: Domain of un 96.3 0.015 3.3E-07 59.5 8.6 102 159-263 21-148 (188)
247 PF13375 RnfC_N: RnfC Barrel s 96.3 0.022 4.8E-07 53.7 9.1 45 923-968 39-83 (101)
248 PRK09859 multidrug efflux syst 96.3 0.0052 1.1E-07 72.4 6.0 71 915-985 62-207 (385)
249 PF01597 GCV_H: Glycine cleava 96.2 0.0084 1.8E-07 58.7 5.7 46 923-968 31-77 (122)
250 COG0509 GcvH Glycine cleavage 96.0 0.0076 1.7E-07 58.6 4.2 49 920-968 36-85 (131)
251 PRK08225 acetyl-CoA carboxylas 96.0 0.0093 2E-07 52.3 4.4 33 914-946 38-70 (70)
252 COG3608 Predicted deacylase [G 95.8 0.02 4.4E-07 64.5 7.2 67 914-981 256-325 (331)
253 PRK05889 putative acetyl-CoA c 95.7 0.013 2.9E-07 51.5 4.2 33 914-946 39-71 (71)
254 TIGR02146 LysS_fung_arch homoc 95.6 0.033 7.3E-07 64.4 8.5 57 1013-1077 111-168 (344)
255 PF02844 GARS_N: Phosphoribosy 95.5 0.015 3.2E-07 54.6 4.0 52 23-76 47-99 (100)
256 PF12700 HlyD_2: HlyD family s 95.4 0.014 3E-07 66.8 4.5 33 914-947 21-53 (328)
257 cd06252 M14_ASTE_ASPA_like_2 A 95.4 0.041 8.9E-07 63.0 8.2 66 915-981 245-314 (316)
258 PRK07051 hypothetical protein; 95.4 0.02 4.4E-07 51.6 4.4 32 915-946 48-79 (80)
259 COG0511 AccB Biotin carboxyl c 95.3 0.018 3.8E-07 57.8 3.9 34 914-947 107-140 (140)
260 cd06251 M14_ASTE_ASPA_like_1 A 95.2 0.046 1E-06 61.7 7.8 65 915-980 220-286 (287)
261 cd06253 M14_ASTE_ASPA_like_3 A 95.2 0.046 9.9E-07 62.0 7.6 67 913-980 228-297 (298)
262 TIGR02994 ectoine_eutE ectoine 95.1 0.053 1.1E-06 62.2 7.7 64 916-980 257-324 (325)
263 PRK06748 hypothetical protein; 95.0 0.034 7.4E-07 50.3 4.7 33 916-948 44-76 (83)
264 PF02843 GARS_C: Phosphoribosy 94.8 0.14 2.9E-06 47.7 8.2 80 299-389 4-90 (93)
265 PF13533 Biotin_lipoyl_2: Biot 94.8 0.038 8.2E-07 45.1 3.9 35 952-986 3-39 (50)
266 PRK12784 hypothetical protein; 94.8 0.16 3.4E-06 44.5 7.7 67 915-981 6-75 (84)
267 PF11379 DUF3182: Protein of u 94.6 0.33 7.1E-06 54.6 11.8 145 32-189 59-205 (355)
268 PF14243 DUF4343: Domain of un 94.5 0.44 9.6E-06 47.2 11.5 113 117-256 2-115 (130)
269 COG0119 LeuA Isopropylmalate/h 94.4 0.079 1.7E-06 62.4 6.9 55 1014-1077 119-175 (409)
270 cd06254 M14_ASTE_ASPA_like_4 A 94.3 0.065 1.4E-06 60.5 6.0 65 913-978 222-288 (288)
271 PRK14847 hypothetical protein; 94.1 0.12 2.6E-06 59.0 7.4 74 994-1077 139-222 (333)
272 cd06250 M14_PaAOTO_like An unc 93.9 0.13 2.7E-06 60.0 7.2 66 914-980 289-358 (359)
273 PF00364 Biotin_lipoyl: Biotin 93.8 0.056 1.2E-06 48.0 3.2 31 915-945 44-74 (74)
274 cd06850 biotinyl_domain The bi 92.3 0.17 3.6E-06 43.2 3.9 31 915-945 37-67 (67)
275 KOG2156|consensus 92.2 0.57 1.2E-05 55.0 9.1 66 91-170 279-345 (662)
276 PF14403 CP_ATPgrasp_2: Circul 92.1 0.45 9.8E-06 56.4 8.5 135 25-170 200-386 (445)
277 PRK06549 acetyl-CoA carboxylas 92.0 0.19 4.1E-06 49.6 4.3 32 914-945 98-129 (130)
278 TIGR02971 heterocyst_DevB ABC 91.9 0.14 3E-06 58.9 3.9 33 916-948 15-50 (327)
279 PF00529 HlyD: HlyD family sec 91.7 0.11 2.4E-06 58.7 2.9 33 916-948 3-35 (305)
280 PF13437 HlyD_3: HlyD family s 91.5 0.29 6.3E-06 46.2 5.0 32 917-948 2-33 (105)
281 PF05896 NQRA: Na(+)-transloca 91.3 0.28 6E-06 53.8 5.0 51 917-968 32-82 (257)
282 PRK06302 acetyl-CoA carboxylas 91.2 0.22 4.7E-06 50.9 4.0 33 914-946 123-155 (155)
283 TIGR00531 BCCP acetyl-CoA carb 91.1 0.23 5E-06 50.8 4.0 33 914-946 124-156 (156)
284 TIGR01843 type_I_hlyD type I s 91.0 0.16 3.5E-06 60.2 3.3 40 914-953 43-82 (423)
285 TIGR01936 nqrA NADH:ubiquinone 90.8 0.2 4.3E-06 59.7 3.8 44 922-966 37-80 (447)
286 TIGR03794 NHPM_micro_HlyD NHPM 90.3 0.26 5.6E-06 58.8 4.2 34 914-947 58-91 (421)
287 cd06663 Biotinyl_lipoyl_domain 90.1 0.35 7.6E-06 42.5 3.8 32 914-945 42-73 (73)
288 PRK05352 Na(+)-translocating N 89.6 0.3 6.5E-06 58.4 3.9 43 923-966 39-81 (448)
289 PF06898 YqfD: Putative stage 89.5 0.74 1.6E-05 54.3 7.0 75 870-963 162-245 (385)
290 KOG2157|consensus 89.2 1.4 3.1E-05 52.9 9.1 54 116-170 199-252 (497)
291 PRK05641 putative acetyl-CoA c 88.9 0.46 1E-05 48.3 4.1 31 915-945 122-152 (153)
292 PF07065 D123: D123; InterPro 88.2 9.3 0.0002 43.4 14.3 141 106-258 75-240 (299)
293 PRK05849 hypothetical protein; 88.0 24 0.00052 45.3 19.2 175 76-255 7-214 (783)
294 PLN02983 biotin carboxyl carri 87.8 0.54 1.2E-05 51.3 4.0 33 914-946 241-273 (274)
295 TIGR02876 spore_yqfD sporulati 87.6 1.6 3.4E-05 51.4 8.0 59 870-944 158-223 (382)
296 KOG0559|consensus 87.5 0.45 9.7E-06 53.4 3.2 33 915-947 116-148 (457)
297 PRK14875 acetoin dehydrogenase 86.6 0.71 1.5E-05 53.5 4.6 35 915-949 46-80 (371)
298 TIGR01000 bacteriocin_acc bact 86.6 0.58 1.3E-05 56.5 3.8 36 916-951 61-96 (457)
299 COG4656 RnfC Predicted NADH:ub 86.6 1.2 2.7E-05 52.9 6.3 41 926-968 45-85 (529)
300 TIGR03551 F420_cofH 7,8-dideme 86.2 13 0.00029 43.1 14.7 183 462-656 85-300 (343)
301 PF09891 DUF2118: Uncharacteri 86.1 0.85 1.8E-05 46.0 4.0 47 920-966 86-133 (150)
302 COG1726 NqrA Na+-transporting 86.0 1.1 2.4E-05 50.4 5.2 41 926-968 41-82 (447)
303 PLN02226 2-oxoglutarate dehydr 85.9 0.79 1.7E-05 54.7 4.3 34 914-947 134-167 (463)
304 cd06255 M14_ASTE_ASPA_like_5 A 85.7 1.5 3.3E-05 49.6 6.5 51 914-965 231-283 (293)
305 COG2190 NagE Phosphotransferas 85.3 1.1 2.4E-05 45.4 4.3 24 927-950 90-113 (156)
306 TIGR01945 rnfC electron transp 85.1 0.71 1.5E-05 55.3 3.5 44 923-967 40-83 (435)
307 TIGR00830 PTBA PTS system, glu 83.9 1.6 3.4E-05 42.7 4.7 14 915-928 36-49 (121)
308 PTZ00144 dihydrolipoamide succ 83.2 1.2 2.6E-05 52.7 4.3 34 915-948 88-121 (418)
309 KOG2799|consensus 83.1 4.5 9.8E-05 45.9 8.3 70 78-149 25-106 (434)
310 KOG3373|consensus 83.0 0.76 1.6E-05 46.1 2.1 62 923-984 80-151 (172)
311 PRK11556 multidrug efflux syst 82.3 5 0.00011 47.9 9.1 60 924-984 61-122 (415)
312 PRK05035 electron transport co 82.3 1.1 2.3E-05 56.6 3.6 44 923-967 46-89 (695)
313 PF04952 AstE_AspA: Succinylgl 80.9 2.7 5.9E-05 47.4 6.0 67 913-980 219-289 (292)
314 PF00358 PTS_EIIA_1: phosphoen 80.3 1.5 3.3E-05 43.5 3.2 14 915-928 40-53 (132)
315 PF06849 DUF1246: Protein of u 80.2 1.3 2.9E-05 42.8 2.6 80 7-97 40-122 (124)
316 PRK09439 PTS system glucose-sp 80.2 2.4 5.1E-05 43.9 4.6 14 915-928 58-71 (169)
317 TIGR00970 leuA_yeast 2-isoprop 80.0 3.6 7.8E-05 50.9 6.9 73 995-1077 134-219 (564)
318 TIGR00998 8a0101 efflux pump m 79.4 2.6 5.7E-05 48.4 5.3 35 914-948 204-238 (334)
319 PRK04165 acetyl-CoA decarbonyl 78.4 29 0.00063 41.6 13.6 73 464-552 129-204 (450)
320 PRK10476 multidrug resistance 78.4 2.4 5.2E-05 49.2 4.6 36 914-949 208-243 (346)
321 TIGR00999 8a0102 Membrane Fusi 77.8 1.5 3.2E-05 48.6 2.5 41 916-956 90-133 (265)
322 TIGR01303 IMP_DH_rel_1 IMP deh 77.1 15 0.00032 44.6 10.8 62 465-532 240-301 (475)
323 TIGR02712 urea_carbox urea car 76.9 2.2 4.8E-05 57.4 4.1 65 911-981 1129-1201(1201)
324 PF01645 Glu_synthase: Conserv 76.8 7.8 0.00017 45.2 8.1 97 461-567 170-267 (368)
325 PRK10559 p-hydroxybenzoic acid 76.5 3.5 7.7E-05 47.1 5.2 33 914-946 154-186 (310)
326 PRK05820 deoA thymidine phosph 76.5 1.8E+02 0.0039 35.0 20.4 187 474-696 50-277 (440)
327 PRK15136 multidrug efflux syst 76.4 2.6 5.6E-05 49.8 4.2 34 914-947 215-248 (390)
328 COG1566 EmrA Multidrug resista 76.0 2.7 5.9E-05 48.6 4.0 31 916-946 55-85 (352)
329 PRK15030 multidrug efflux syst 75.6 2 4.3E-05 50.9 2.9 43 941-984 56-100 (397)
330 PF01551 Peptidase_M23: Peptid 75.6 3 6.5E-05 38.7 3.6 16 915-930 14-29 (96)
331 PRK05704 dihydrolipoamide succ 75.0 3.3 7.2E-05 49.1 4.5 36 914-949 45-80 (407)
332 PRK09859 multidrug efflux syst 74.8 2.9 6.3E-05 49.3 4.1 58 925-983 36-95 (385)
333 PRK09578 periplasmic multidrug 74.6 3.3 7.1E-05 48.8 4.4 55 928-983 41-97 (385)
334 TIGR01730 RND_mfp RND family e 73.8 4.2 9.2E-05 46.2 5.0 35 914-948 134-168 (322)
335 TIGR01347 sucB 2-oxoglutarate 73.8 3.7 8E-05 48.7 4.5 35 914-948 43-77 (403)
336 PRK09439 PTS system glucose-sp 73.6 6.7 0.00015 40.7 5.8 49 915-967 21-73 (169)
337 cd06849 lipoyl_domain Lipoyl d 73.3 4.2 9E-05 34.3 3.7 31 915-945 44-74 (74)
338 cd01568 QPRTase_NadC Quinolina 73.3 43 0.00093 37.5 12.6 185 332-564 56-246 (269)
339 KOG1057|consensus 72.6 1.9 4.2E-05 52.9 1.8 189 55-255 106-321 (1018)
340 PF13437 HlyD_3: HlyD family s 72.5 3.9 8.4E-05 38.4 3.6 33 953-985 1-35 (105)
341 COG0508 AceF Pyruvate/2-oxoglu 72.5 3.9 8.4E-05 48.5 4.3 34 915-948 46-79 (404)
342 PRK03598 putative efflux pump 72.2 3.8 8.3E-05 47.2 4.1 36 913-948 202-237 (331)
343 COG0845 AcrA Membrane-fusion p 71.1 3.7 7.9E-05 47.0 3.7 32 916-947 68-99 (372)
344 TIGR03794 NHPM_micro_HlyD NHPM 71.0 5.1 0.00011 47.8 5.0 33 915-947 254-286 (421)
345 PRK05848 nicotinate-nucleotide 70.7 44 0.00095 37.5 11.8 174 339-564 63-248 (273)
346 PRK09783 copper/silver efflux 70.6 4.3 9.2E-05 48.4 4.1 34 915-948 210-243 (409)
347 PF07831 PYNP_C: Pyrimidine nu 70.1 3.5 7.5E-05 36.8 2.4 22 926-947 34-55 (75)
348 TIGR01334 modD putative molybd 68.5 39 0.00085 38.0 10.8 176 333-564 60-254 (277)
349 COG0069 GltB Glutamate synthas 67.6 14 0.0003 44.4 7.4 134 443-601 248-386 (485)
350 TIGR02049 gshA_ferroox glutama 67.4 16 0.00034 42.1 7.4 65 84-169 246-313 (403)
351 TIGR01843 type_I_hlyD type I s 67.0 4.6 9.9E-05 47.9 3.4 47 914-960 271-322 (423)
352 PRK07360 FO synthase subunit 2 66.2 36 0.00079 40.0 10.6 180 462-656 106-322 (371)
353 cd01572 QPRTase Quinolinate ph 66.0 1.5E+02 0.0032 33.3 14.8 178 332-564 57-245 (268)
354 cd00210 PTS_IIA_glc PTS_IIA, P 65.0 9.7 0.00021 37.4 4.6 28 969-1005 90-117 (124)
355 PF00529 HlyD: HlyD family sec 64.9 7.7 0.00017 43.7 4.6 33 952-984 2-36 (305)
356 TIGR01995 PTS-II-ABC-beta PTS 64.6 9.5 0.00021 47.8 5.6 28 923-950 543-570 (610)
357 PRK06843 inosine 5-monophospha 63.3 30 0.00066 40.9 9.1 59 462-526 164-223 (404)
358 PRK09824 PTS system beta-gluco 63.1 10 0.00022 47.4 5.5 29 923-951 559-587 (627)
359 COG4770 Acetyl/propionyl-CoA c 63.0 7 0.00015 47.1 3.7 68 909-981 570-644 (645)
360 COG4072 Uncharacterized protei 62.5 15 0.00033 36.0 5.2 49 917-965 94-143 (161)
361 PRK05878 pyruvate phosphate di 61.7 1.9E+02 0.0041 35.8 15.7 40 213-255 257-296 (530)
362 PLN02528 2-oxoisovalerate dehy 61.6 9.2 0.0002 45.6 4.5 36 914-949 41-76 (416)
363 PRK08444 hypothetical protein; 60.6 2E+02 0.0043 33.7 15.1 154 462-639 95-284 (353)
364 KOG1447|consensus 60.1 46 0.001 36.5 8.8 100 80-181 24-142 (412)
365 PRK07428 nicotinate-nucleotide 60.0 2.4E+02 0.0053 31.9 15.1 230 273-564 13-262 (288)
366 COG0269 SgbH 3-hexulose-6-phos 59.9 19 0.00041 38.6 6.0 65 990-1068 72-136 (217)
367 COG2100 Predicted Fe-S oxidore 59.4 1.1E+02 0.0023 35.0 11.7 80 475-568 173-253 (414)
368 TIGR03699 mena_SCO4550 menaqui 58.7 1.5E+02 0.0033 34.2 13.9 199 462-686 87-332 (340)
369 TIGR01349 PDHac_trf_mito pyruv 58.0 12 0.00025 45.0 4.5 35 915-949 43-78 (435)
370 PRK13753 dihydropteroate synth 58.0 86 0.0019 35.3 11.0 54 480-545 65-118 (279)
371 cd00210 PTS_IIA_glc PTS_IIA, P 57.8 10 0.00022 37.3 3.3 27 921-947 77-103 (124)
372 PRK11578 macrolide transporter 57.7 19 0.00042 42.1 6.3 58 925-983 36-95 (370)
373 PRK11856 branched-chain alpha- 57.2 12 0.00027 44.5 4.6 35 915-949 46-80 (411)
374 PRK06096 molybdenum transport 57.0 91 0.002 35.2 11.1 178 333-564 61-255 (284)
375 PF09370 TIM-br_sig_trns: TIM- 56.6 95 0.0021 34.5 10.7 116 20-153 90-209 (268)
376 PTZ00170 D-ribulose-5-phosphat 56.3 17 0.00037 39.7 5.1 74 473-554 43-119 (228)
377 PF04131 NanE: Putative N-acet 55.4 39 0.00085 35.6 7.2 65 462-533 63-127 (192)
378 PF08886 GshA: Glutamate-cyste 55.3 13 0.00028 43.0 4.0 66 83-169 248-316 (404)
379 PRK05567 inosine 5'-monophosph 55.2 48 0.001 40.5 9.3 48 477-528 253-300 (486)
380 TIGR00343 pyridoxal 5'-phospha 55.1 80 0.0017 35.4 10.0 57 462-529 88-145 (287)
381 KOG3111|consensus 54.7 19 0.00042 37.7 4.8 61 478-546 154-214 (224)
382 cd01571 NAPRTase_B Nicotinate 54.6 2.3E+02 0.005 32.3 14.1 184 341-565 59-265 (302)
383 TIGR01000 bacteriocin_acc bact 54.2 11 0.00023 45.7 3.5 32 914-945 316-348 (457)
384 PRK10255 PTS system N-acetyl g 53.8 14 0.00031 46.2 4.5 20 927-946 583-602 (648)
385 PRK08385 nicotinate-nucleotide 52.9 2.2E+02 0.0048 32.1 13.3 181 332-564 57-250 (278)
386 COG1566 EmrA Multidrug resista 52.7 12 0.00025 43.6 3.2 38 913-950 207-245 (352)
387 PRK11750 gltB glutamate syntha 51.4 26 0.00056 47.5 6.4 94 443-539 941-1039(1485)
388 PF02749 QRPTase_N: Quinolinat 51.1 13 0.00029 34.0 2.8 25 923-947 44-68 (88)
389 TIGR03700 mena_SCO4494 putativ 51.0 4.3E+02 0.0092 30.8 15.9 155 462-633 94-279 (351)
390 TIGR00423 radical SAM domain p 49.8 2.2E+02 0.0047 32.5 13.0 178 462-656 51-264 (309)
391 PRK09016 quinolinate phosphori 49.6 3.5E+02 0.0076 30.8 14.1 179 330-564 82-271 (296)
392 PRK10255 PTS system N-acetyl g 49.4 34 0.00075 43.0 6.8 50 915-968 499-552 (648)
393 TIGR03849 arch_ComA phosphosul 49.0 36 0.00078 37.3 6.0 98 970-1070 56-155 (237)
394 TIGR00078 nadC nicotinate-nucl 47.9 2.3E+02 0.005 31.7 12.4 172 339-564 59-241 (265)
395 PRK11892 pyruvate dehydrogenas 47.8 20 0.00043 43.4 4.3 34 915-948 46-80 (464)
396 TIGR02971 heterocyst_DevB ABC 47.4 21 0.00046 40.9 4.4 34 951-984 13-51 (327)
397 PRK07094 biotin synthase; Prov 46.6 4.1E+02 0.0088 30.3 14.8 144 462-631 85-249 (323)
398 PRK06464 phosphoenolpyruvate s 46.4 4.6E+02 0.0099 34.3 16.4 44 210-255 288-332 (795)
399 PF02817 E3_binding: e3 bindin 46.3 17 0.00036 28.2 2.2 16 989-1004 8-23 (39)
400 PF12700 HlyD_2: HlyD family s 45.8 18 0.00039 41.1 3.4 38 943-983 15-54 (328)
401 PRK08445 hypothetical protein; 45.4 1.9E+02 0.0041 33.7 11.7 210 462-684 88-335 (348)
402 cd04727 pdxS PdxS is a subunit 44.8 57 0.0012 36.5 6.9 57 462-529 86-143 (283)
403 PLN02744 dihydrolipoyllysine-r 44.8 21 0.00045 43.8 3.9 33 915-947 156-189 (539)
404 PRK09283 delta-aminolevulinic 44.4 56 0.0012 37.2 6.8 85 985-1070 59-166 (323)
405 PRK07896 nicotinate-nucleotide 43.9 5.3E+02 0.012 29.3 15.9 233 272-565 14-266 (289)
406 PRK09824 PTS system beta-gluco 43.7 33 0.00072 43.0 5.4 47 916-966 480-530 (627)
407 PRK10871 nlpD lipoprotein NlpD 42.6 27 0.00059 39.9 4.1 19 929-947 273-291 (319)
408 PF07831 PYNP_C: Pyrimidine nu 42.6 27 0.00059 31.1 3.3 39 957-995 30-69 (75)
409 cd00381 IMPDH IMPDH: The catal 42.5 1E+02 0.0022 35.6 8.8 47 476-526 118-164 (325)
410 cd00384 ALAD_PBGS Porphobilino 41.5 65 0.0014 36.5 6.7 85 985-1070 51-158 (314)
411 COG2190 NagE Phosphotransferas 40.9 32 0.00068 35.1 3.8 49 915-967 6-58 (156)
412 TIGR00999 8a0102 Membrane Fusi 40.5 28 0.0006 38.4 3.8 32 953-984 90-123 (265)
413 PTZ00314 inosine-5'-monophosph 40.1 1.2E+02 0.0026 37.2 9.3 58 470-532 260-317 (495)
414 PRK13813 orotidine 5'-phosphat 39.0 41 0.0009 36.0 4.8 65 482-552 45-109 (215)
415 PRK11613 folP dihydropteroate 38.5 1.5E+02 0.0032 33.5 9.1 138 501-640 34-221 (282)
416 PF07745 Glyco_hydro_53: Glyco 38.5 81 0.0018 36.5 7.2 91 989-1079 28-145 (332)
417 PRK12784 hypothetical protein; 38.2 44 0.00096 29.8 3.7 29 920-948 49-77 (84)
418 TIGR00830 PTBA PTS system, glu 38.1 64 0.0014 31.6 5.4 48 917-968 1-52 (121)
419 PF01702 TGT: Queuine tRNA-rib 38.0 67 0.0015 35.1 6.3 48 475-526 94-142 (238)
420 PF00358 PTS_EIIA_1: phosphoen 37.6 37 0.0008 33.8 3.7 49 916-968 4-56 (132)
421 TIGR00262 trpA tryptophan synt 37.6 1.1E+02 0.0024 33.9 8.0 82 970-1070 33-123 (256)
422 TIGR01302 IMP_dehydrog inosine 37.5 98 0.0021 37.4 8.0 46 478-527 250-295 (450)
423 PF00809 Pterin_bind: Pterin b 37.2 1.7E+02 0.0036 31.5 9.0 134 478-641 57-207 (210)
424 TIGR03128 RuMP_HxlA 3-hexulose 36.8 57 0.0012 34.6 5.3 70 480-556 39-109 (206)
425 COG2108 Uncharacterized conser 36.7 1E+02 0.0022 35.3 7.2 90 475-569 91-184 (353)
426 TIGR01995 PTS-II-ABC-beta PTS 36.5 54 0.0012 41.2 5.8 48 916-967 464-515 (610)
427 PRK09234 fbiC FO synthase; Rev 36.5 5E+02 0.011 34.1 14.5 179 462-656 572-787 (843)
428 TIGR01496 DHPS dihydropteroate 36.1 64 0.0014 35.9 5.8 42 479-526 62-103 (257)
429 cd01134 V_A-ATPase_A V/A-type 34.8 3.5E+02 0.0075 31.7 11.3 40 929-968 54-96 (369)
430 TIGR02645 ARCH_P_rylase putati 34.7 41 0.00089 40.7 4.1 63 475-537 133-204 (493)
431 cd02811 IDI-2_FMN Isopentenyl- 34.4 1.2E+02 0.0027 34.9 7.9 49 479-531 165-213 (326)
432 PRK04350 thymidine phosphoryla 33.7 43 0.00094 40.5 4.1 63 475-537 128-199 (490)
433 COG4942 Membrane-bound metallo 33.7 29 0.00063 40.9 2.6 21 927-947 372-392 (420)
434 cd02808 GltS_FMN Glutamate syn 33.6 1.5E+02 0.0032 35.2 8.6 60 474-537 195-255 (392)
435 TIGR02643 T_phosphoryl thymidi 33.5 41 0.00089 40.1 3.8 82 475-562 50-144 (437)
436 COG1181 DdlA D-alanine-D-alani 33.4 4.7 0.0001 46.2 -3.8 108 73-186 45-156 (317)
437 PRK11637 AmiB activator; Provi 33.0 41 0.00089 40.3 3.8 15 914-928 339-353 (428)
438 COG0191 Fba Fructose/tagatose 32.3 83 0.0018 35.4 5.7 65 477-546 60-126 (286)
439 TIGR01290 nifB nitrogenase cof 32.2 1.9E+02 0.004 35.0 9.2 93 474-569 91-215 (442)
440 PRK05437 isopentenyl pyrophosp 31.8 1.5E+02 0.0032 34.7 8.0 57 478-539 172-228 (352)
441 PRK09195 gatY tagatose-bisphos 31.7 82 0.0018 35.6 5.7 48 477-527 59-108 (284)
442 PRK05628 coproporphyrinogen II 31.5 8.7E+02 0.019 28.4 14.6 85 465-551 62-159 (375)
443 PRK04180 pyridoxal biosynthesi 31.2 1.5E+02 0.0033 33.4 7.5 48 470-525 101-148 (293)
444 TIGR00433 bioB biotin syntheta 31.2 4.6E+02 0.01 29.3 11.9 147 462-631 77-241 (296)
445 TIGR03327 AMP_phos AMP phospho 30.4 51 0.0011 40.0 3.9 61 475-537 134-205 (500)
446 TIGR00381 cdhD CO dehydrogenas 30.3 6.9E+02 0.015 29.5 12.8 132 462-643 152-317 (389)
447 KOG2367|consensus 30.2 20 0.00044 42.3 0.6 55 1016-1077 178-233 (560)
448 PF10281 Ish1: Putative stress 30.1 1.2E+02 0.0027 23.1 4.7 32 79-114 5-36 (38)
449 TIGR03586 PseI pseudaminic aci 29.8 2.7E+02 0.0058 32.2 9.5 95 51-169 78-172 (327)
450 PF01820 Dala_Dala_lig_N: D-al 29.4 47 0.001 32.2 2.9 34 36-69 83-117 (117)
451 TIGR03309 matur_yqeB selenium- 28.8 57 0.0012 36.0 3.7 32 950-982 163-196 (256)
452 PRK07535 methyltetrahydrofolat 28.7 6.3E+02 0.014 28.2 12.0 136 476-643 53-202 (261)
453 TIGR02026 BchE magnesium-proto 28.3 4.1E+02 0.0089 32.5 11.5 134 464-612 241-393 (497)
454 PF06898 YqfD: Putative stage 27.9 61 0.0013 38.3 4.1 56 917-979 162-226 (385)
455 PRK08446 coproporphyrinogen II 27.9 1E+03 0.022 27.7 14.7 86 465-551 54-149 (350)
456 TIGR01858 tag_bisphos_ald clas 27.8 1E+02 0.0023 34.7 5.6 49 476-527 56-106 (282)
457 COG0157 NadC Nicotinate-nucleo 27.8 64 0.0014 36.1 3.8 26 923-948 63-88 (280)
458 PRK05742 nicotinate-nucleotide 27.3 2.7E+02 0.0059 31.4 8.8 172 341-564 73-252 (277)
459 PRK12738 kbaY tagatose-bisphos 27.3 1.2E+02 0.0025 34.4 5.9 50 476-528 58-109 (286)
460 PRK14686 hypothetical protein; 27.3 1.6E+02 0.0034 28.8 6.1 44 217-260 9-60 (119)
461 KOG2544|consensus 27.2 1.4E+02 0.0031 35.5 6.5 137 478-640 494-654 (711)
462 PRK08508 biotin synthase; Prov 26.9 3.3E+02 0.0072 30.5 9.6 117 463-596 56-193 (279)
463 PRK13533 7-cyano-7-deazaguanin 26.8 42 0.00092 40.8 2.5 49 476-529 201-251 (487)
464 cd04823 ALAD_PBGS_aspartate_ri 26.6 1.7E+02 0.0036 33.4 6.8 86 985-1070 54-163 (320)
465 PRK06241 phosphoenolpyruvate s 26.5 1.6E+03 0.035 29.6 18.3 44 209-255 267-310 (871)
466 PRK05835 fructose-bisphosphate 26.5 1.2E+02 0.0026 34.7 5.9 52 476-529 57-110 (307)
467 PRK13762 tRNA-modifying enzyme 26.3 5.4E+02 0.012 29.6 11.3 135 475-634 143-296 (322)
468 COG1809 (2R)-phospho-3-sulfola 26.0 2.1E+02 0.0045 31.0 7.0 94 970-1067 75-171 (258)
469 PRK12737 gatY tagatose-bisphos 25.9 1.2E+02 0.0025 34.4 5.6 48 477-527 59-108 (284)
470 cd02810 DHOD_DHPD_FMN Dihydroo 25.8 2.5E+02 0.0054 31.5 8.4 73 989-1070 115-197 (289)
471 PRK06559 nicotinate-nucleotide 25.8 5E+02 0.011 29.5 10.5 202 268-522 6-221 (290)
472 PRK05305 phosphatidylserine de 25.7 1.8E+02 0.0038 31.2 6.8 56 912-968 51-108 (206)
473 cd02940 DHPD_FMN Dihydropyrimi 25.6 2.3E+02 0.0049 32.2 8.1 49 475-524 151-199 (299)
474 cd00947 TBP_aldolase_IIB Tagat 25.4 1.3E+02 0.0028 33.9 5.8 49 476-527 53-103 (276)
475 PRK15452 putative protease; Pr 25.4 1.1E+02 0.0023 37.0 5.5 55 1012-1073 46-100 (443)
476 COG0845 AcrA Membrane-fusion p 25.3 2.2E+02 0.0047 32.2 8.0 41 942-983 58-100 (372)
477 TIGR02876 spore_yqfD sporulati 25.2 85 0.0019 37.1 4.6 54 917-978 158-222 (382)
478 PRK13397 3-deoxy-7-phosphohept 25.1 5.5E+02 0.012 28.5 10.5 129 17-169 21-162 (250)
479 PF04174 CP_ATPgrasp_1: A circ 24.9 75 0.0016 36.7 3.9 59 89-150 263-322 (330)
480 cd01572 QPRTase Quinolinate ph 24.5 80 0.0017 35.4 4.0 26 922-947 56-81 (268)
481 TIGR03471 HpnJ hopanoid biosyn 24.3 6.4E+02 0.014 30.5 12.1 130 465-613 248-394 (472)
482 COG0826 Collagenase and relate 23.9 93 0.002 36.2 4.5 52 1012-1072 49-102 (347)
483 TIGR02151 IPP_isom_2 isopenten 23.8 2.6E+02 0.0056 32.4 8.1 47 478-526 165-211 (333)
484 cd04740 DHOD_1B_like Dihydroor 23.8 2.8E+02 0.006 31.3 8.3 49 475-524 137-185 (296)
485 PRK14674 hypothetical protein; 23.7 1.6E+02 0.0035 29.3 5.5 43 218-260 10-60 (133)
486 PRK07379 coproporphyrinogen II 23.6 2.4E+02 0.0052 33.5 8.0 63 465-529 69-136 (400)
487 TIGR03128 RuMP_HxlA 3-hexulose 23.6 1.7E+02 0.0036 31.0 6.1 63 992-1068 70-132 (206)
488 PRK05660 HemN family oxidoredu 23.3 8.5E+02 0.018 28.6 12.5 148 465-612 61-234 (378)
489 cd04736 MDH_FMN Mandelate dehy 23.3 2.1E+02 0.0045 33.6 7.1 45 480-529 224-268 (361)
490 PF03681 UPF0150: Uncharacteri 23.2 74 0.0016 25.4 2.5 21 357-377 24-44 (48)
491 cd02809 alpha_hydroxyacid_oxid 23.2 2.6E+02 0.0056 31.7 7.9 44 480-528 160-203 (299)
492 PRK07998 gatY putative fructos 23.0 1.7E+02 0.0037 33.1 6.2 48 476-526 58-107 (283)
493 PRK07259 dihydroorotate dehydr 22.9 3.3E+02 0.0071 30.8 8.7 50 475-525 140-189 (301)
494 PRK14607 bifunctional glutamin 22.8 6.8E+02 0.015 31.0 12.0 79 475-559 242-331 (534)
495 PRK08207 coproporphyrinogen II 22.6 1E+03 0.022 29.1 13.3 87 465-551 221-320 (488)
496 cd06910 M14_ASTE_ASPA_like_7 A 22.6 95 0.0021 34.8 4.2 45 930-980 226-272 (272)
497 cd00739 DHPS DHPS subgroup of 22.5 7.8E+02 0.017 27.3 11.3 41 479-525 63-103 (257)
498 PRK12857 fructose-1,6-bisphosp 22.3 1.7E+02 0.0037 33.1 6.0 47 478-527 60-108 (284)
499 TIGR03569 NeuB_NnaB N-acetylne 22.3 2.7E+02 0.0058 32.3 7.7 71 483-570 185-255 (329)
500 cd04722 TIM_phosphate_binding 22.1 3.6E+02 0.0079 27.3 8.3 66 462-531 83-149 (200)
No 1
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=6.1e-192 Score=1627.20 Aligned_cols=899 Identities=55% Similarity=0.896 Sum_probs=859.3
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
.|.|+..|||+|.+|.+..|.++||++|.|+++|++.++|+|||||||||||++|++.|.+.||.|+||+++.+..++||
T Consensus 43 ~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdK 122 (1149)
T COG1038 43 LSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDK 122 (1149)
T ss_pred chhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|..+.++|+|+.|++...+++.+++.+++++.|||+|||++.|+||||||+|+++++|.+++.++.++++++||+++
T Consensus 123 v~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~e 202 (1149)
T COG1038 123 VKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDE 202 (1149)
T ss_pred HHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
++||+||++|+|++||+++|.+|+++|+++|+||+||+||++++.+|++.++++++++|++.+.++++.+||.|++++||
T Consensus 203 VyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEF 282 (1149)
T COG1038 203 VYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEF 282 (1149)
T ss_pred EEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhccceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCC--CCCCCccc-cccCeEEEEeeeccCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLP--ELGLTQEK-ISPQGFAIQCRVTTEDPAKNFQP 317 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~--~l~~~~~~-i~~~g~ai~~ri~ae~p~~~f~p 317 (1080)
++|.+|++||||||||+|++|++||++||+|+++.|+.++.|..|+ ++++++.. |..+|+|+|||++.|||.++|.|
T Consensus 283 Lvd~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQi~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n~F~P 362 (1149)
T COG1038 283 LVDEDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQIHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPENGFIP 362 (1149)
T ss_pred EEcCCCcEEEEEecCceeeEEeeeeeeechhHHHHHHHHhccCccCCcccCCCccccccccceEEEEEeeccCcccCCCC
Confidence 9999999999999999999999999999999999999999999997 78876654 99999999999999999999999
Q ss_pred CCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccc
Q psy3968 318 DTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQ 397 (1080)
Q Consensus 318 ~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~ 397 (1080)
++|+|..++++++.|||+|.+..+.|..|+|+|||++.++.+||.|+++|++||.|+|.+++|+||+|||+||.++|.|+
T Consensus 363 DtGrI~aYRs~gGfGVRLD~Gn~~~GavItpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrIrGVkTNi~FL~~vl~h~ 442 (1149)
T COG1038 363 DTGRITAYRSAGGFGVRLDGGNAYAGAVITPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIRGVKTNIPFLEAVLNHP 442 (1149)
T ss_pred CCceEEEEecCCCceEEecCCcccccceeccccccceeeEeecCCCHHHHHHHHHHHHHHheecceecCcHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeeecCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCC------CCCC-------
Q psy3968 398 KFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEI------PLGK------- 464 (1080)
Q Consensus 398 ~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~------~~G~------- 464 (1080)
.|.+|+++|+||+++|+||.+....+|+++++.|++.|+||||. +..++..|..-.+..+.+ ..|+
T Consensus 443 ~F~~g~y~T~FId~tPeLf~~~~~~Dr~tK~L~yl~dvtVNg~P-~~~~r~kp~~~~~~~~~~~~~~~~~~Gtkq~Ld~~ 521 (1149)
T COG1038 443 DFRSGRYTTSFIDTTPELFQFPKSQDRGTKLLTYLADVTVNGFP-GLKSRPKPAYDDAKLPVINVSKPPPRGTKQILDEL 521 (1149)
T ss_pred ccccCcceeeeccCCHHHhccccccchhHHHHHHHHHheecCCC-ccCCCCCcccccccCCcccccCCCCccHHHHHHhh
Confidence 99999999999999999999999999999999999999999974 333344444333322211 1231
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 522 GP~~fa~wvr~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL~EdPWeRL~ 601 (1149)
T COG1038 522 GPEGFARWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFLKEDPWERLE 601 (1149)
T ss_pred ChHHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHhccCHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 602 ~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~gkv~EatiCYTG 681 (1149)
T COG1038 602 RLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAGKVAEATICYTG 681 (1149)
T ss_pred HHHHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcchhhhhhHHHHHHhcCCeEEEEEEecc
Confidence
Q ss_pred ----------------------------eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHH
Q psy3968 465 ----------------------------LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAE 516 (1080)
Q Consensus 465 ----------------------------~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~ 516 (1080)
.|.||||+|++.|..++.||++||+.+ ++|||+|+|||.|.++|++++|++
T Consensus 682 Dildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~aA~~ 760 (1149)
T COG1038 682 DILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVE 760 (1149)
T ss_pred ccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHHHHHHHH
Confidence 123999999999999999999999999 999999999999999999999999
Q ss_pred cCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCC
Q psy3968 517 AGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPG 596 (1080)
Q Consensus 517 aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPG 596 (1080)
||||+||+++++|+|.||||++.+++++|.+..+++++|.+.+..++.||+.+|..|.+||+ .++++++.||.|+|||
T Consensus 761 AGvDivD~A~~smsG~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR~~Ya~FEs--~lkgp~~eVY~HEmPG 838 (1149)
T COG1038 761 AGVDIVDVAMASMSGLTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRKLYAPFES--GLKGPATEVYLHEMPG 838 (1149)
T ss_pred cCCchhhhhhhhccCCCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhc--CCCCCCcceeeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred chhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhh
Q psy3968 597 GQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFL 676 (1080)
Q Consensus 597 G~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~ 676 (1080)
||+|||++|++.+|+.+||+||.+.|.+|+++||++++|||||++||++|+|||+|.||.+++.+++..+.||+||+.|+
T Consensus 839 GQ~tNLk~QA~slGLg~Rw~evk~~Y~~vN~mfGdivKVTPSSKVVGDmAl~MV~n~Lt~~dv~~~~~~l~fPdSVv~ff 918 (1149)
T COG1038 839 GQLTNLKQQARSLGLGDRWEEVKEAYREVNRMFGDIVKVTPSSKVVGDLALFMVQNDLTEEDVENDANDLDFPDSVVSFF 918 (1149)
T ss_pred cccccHHHHHHhccchhhHHHHHHHHHHHHHHhCCceEecccchhHHHHHHHHHhcCCCHHHHhcccccCCCcHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHHHHHHhcC
Q psy3968 677 QGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYLTFRESFG 755 (1080)
Q Consensus 677 ~G~~G~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~~~~~~~~ 755 (1080)
+|..|+|||+||++|++++|||++++++||+.++||.||++.|++|+++.++ .+|.|+++|+|||+++++|.++|+.||
T Consensus 919 ~G~lGqP~gGfPe~Lqk~vLkg~~p~t~Rpg~~l~~~d~~a~r~~l~~~~~~~~~d~d~~sy~lyPkvf~dy~~~~~~yG 998 (1149)
T COG1038 919 RGELGQPPGGFPEPLQKKVLKGREPLTDRPGELLEPADFEAIRKELEEKLGREVSDQDVASYLLYPKVFEDYQKHRETYG 998 (1149)
T ss_pred hcccCCCCCCCCHHHHHHHhcCCCccccCccccCCccchHHHHHHHHHHhCCCchhHHHHHHHhcchhHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999886 899999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccc
Q psy3968 756 PVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKIS 835 (1080)
Q Consensus 756 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 835 (1080)
+++.|||+.||+|++.|||++|++++|| +++|++ .++ +++++.
T Consensus 999 d~S~L~t~~ff~gm~~gEe~~v~ie~Gk-----------tLii~l---------------------~ai----ge~d~~- 1041 (1149)
T COG1038 999 DVSVLPTPTFFYGLRPGEEIEVEIEKGK-----------TLIIKL---------------------QAI----GEPDEK- 1041 (1149)
T ss_pred CccccCcchhhccCCCCceEEEEecCCc-----------EEEEEe---------------------ccc----CCCCcC-
Confidence 9999999999999999999999999999 999999 555 666666
Q ss_pred hhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCC
Q psy3968 836 PFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPG 915 (1080)
Q Consensus 836 ~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1080)
|. ++++|++||++|++ .|.+++. ......+++++++|++
T Consensus 1042 ----------------G~--------------r~v~felNGq~R~i----~v~Drs~-------~~~~~~r~KAd~~Np~ 1080 (1149)
T COG1038 1042 ----------------GM--------------RTVYFELNGQPREI----KVKDRSV-------GSSVVARRKADPGNPG 1080 (1149)
T ss_pred ----------------Cc--------------EEEEEEeCCceeee----eeccccc-------ccccccccccCCCCcc
Confidence 77 89999999999999 8888765 3345678899999999
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
||.|||||+|+++.|++||+|++||+|+++||||||+.|.||.+|+|++++|+ ++|..||+|+.++
T Consensus 1081 higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1081 HIGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred ccCCCCCCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 99999999999999999999999999999999999999999999999999999 9999999999874
No 2
>KOG0369|consensus
Probab=100.00 E-value=1e-184 Score=1536.04 Aligned_cols=905 Identities=71% Similarity=1.097 Sum_probs=880.2
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+|+|+..|||+|.+|.+.+|+.+|+.+++|+++|+++++|+|||||||+||+..|+++|..+|+.|+||+++.+..++||
T Consensus 69 ~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDK 148 (1176)
T KOG0369|consen 69 LSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDK 148 (1176)
T ss_pred hhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|.++.++|+|+.|++..++++.+|+.+|+.+.|+|+|+|+++|+||+|+|+|++.++++++++++.+++..+||++.
T Consensus 149 v~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~ 228 (1176)
T KOG0369|consen 149 VAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGT 228 (1176)
T ss_pred HHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCce
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
++||+|++.|+|++||.++|.+|+++|+++|+|++||+||++++++|++.++++++++|...+.++++..||.+++++||
T Consensus 229 ~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEF 308 (1176)
T KOG0369|consen 229 LFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEF 308 (1176)
T ss_pred eeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
++|..|++||||||||+|++|+++|.+||+|++.+++++|.|.+|+++++.|+.|..+|++|+||++.|||.++|.|++|
T Consensus 309 LvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vAeG~tLp~lgl~QdkI~trG~aIQCRvTTEDPa~~FqPdtG 388 (1176)
T KOG0369|consen 309 LVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVAEGASLPDLGLTQDKITTRGFAIQCRVTTEDPAKGFQPDTG 388 (1176)
T ss_pred EEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhhcCCCcccccccccceeecceEEEEEEeccCccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
+|++++++++.|+|+|.+.++.|+.|+|+|||++.++++.|.|.+.+.++|.|+|.+++|||++|||+||.++|.++.|.
T Consensus 389 riEVfRSgeGmGiRLD~asafaGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiRGVKTNIpFllnvL~n~~Fl 468 (1176)
T KOG0369|consen 389 RIEVFRSGEGMGIRLDGASAFAGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIRGVKTNIPFLLNVLTNPVFL 468 (1176)
T ss_pred eEEEEEeCCCceEeecCccccccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhcceecCcHHHHHHhcCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCC----------------
Q psy3968 401 NGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGK---------------- 464 (1080)
Q Consensus 401 ~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~---------------- 464 (1080)
.|.+||.|||++|+||+++..++|+++++.|++.+.|||++.|.+...+|..+.++++.++.|+
T Consensus 469 ~g~~~T~FIDe~PeLFq~~psqNRAQKLL~Ylg~v~VNGpstp~~~~l~p~~~~p~vP~~~~~~~pp~G~R~vLl~~GP~ 548 (1176)
T KOG0369|consen 469 EGTVDTTFIDETPELFQLKPSQNRAQKLLHYLGDVAVNGPSTPGQTGLPPLKSSPVVPHLPDGTGPPKGWRDVLLEEGPE 548 (1176)
T ss_pred eeeeeeEEecCChHHhccccchhHHHHHHHHHHHhhccCCCCCCcCCCCcccCCCCCCcccCCCCCCccHHHHHHhhCHH
Confidence 9999999999999999999999999999999999999999999999999999999888765321
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 549 ~FAk~VRn~~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVamRFLhEcPWeRL~~lR 628 (1176)
T KOG0369|consen 549 EFAKAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVAMRFLHECPWERLRELR 628 (1176)
T ss_pred HHHHHHhcCCCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHHHHHHhcChHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 629 kliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~lpnl~lGmeAagkAGGVVEAai~YtGDv~ 708 (1176)
T KOG0369|consen 629 KLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYLPNLLLGMEAAGKAGGVVEAAICYTGDVL 708 (1176)
T ss_pred HhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhhhhhhhhhHhhhhccCCeEEEEEeeccccC
Confidence
Q ss_pred -------------------------eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCC
Q psy3968 465 -------------------------LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGA 519 (1080)
Q Consensus 465 -------------------------~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~ 519 (1080)
.+|||||+|++.|..++-||.+||.++|++|||+|+|||.|.|+|+++++.+|||
T Consensus 709 dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGA 788 (1176)
T KOG0369|consen 709 DPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGA 788 (1176)
T ss_pred CcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCC
Confidence 2269999999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchh
Q psy3968 520 DVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQY 599 (1080)
Q Consensus 520 ~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~ 599 (1080)
|.||+++.+|+|-|+||++..+++.|+++..+|+++++.+.+++.||++.|..|.||+...++++.++.||.|+||||||
T Consensus 789 DVVDvA~dSMSGmTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~LYapFe~tttmksgn~dVY~hEIPGGQy 868 (1176)
T KOG0369|consen 789 DVVDVAVDSMSGMTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLLYAPFECTTTMKSGNSDVYQHEIPGGQY 868 (1176)
T ss_pred ceeeeecccccccccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhhhchhhhcccccCCCcchhhccCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccc
Q psy3968 600 TNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGA 679 (1080)
Q Consensus 600 snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~ 679 (1080)
+||+.|+-++|+.+.|+||++.|.+.+.+||++++|||+|+|||++|+|||+|.|+.+...++++.++||++|++|++|+
T Consensus 869 TNL~FQA~slGLG~q~~evKkaYrEAN~lLGDiiKVTPsSKvVGDLAQFMVqN~Lt~~~~~~rA~~LsFP~SVvdf~qG~ 948 (1176)
T KOG0369|consen 869 TNLQFQAFSLGLGEQFAEVKKAYREANLLLGDIIKVTPSSKVVGDLAQFMVQNKLTRDDVERRAEELSFPKSVVDFFQGL 948 (1176)
T ss_pred eeeeeehhhccchhhHHHHHHHHHHHHHHhhCeeeeccchhhHHHHHHHHHhcCCCHHHHHHHhhhcCCcHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCCCChHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q psy3968 680 IGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDK 759 (1080)
Q Consensus 680 ~G~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~ed~l~~~~~p~~~~~f~~~~~~~~~~~~ 759 (1080)
.|+|+|+||++++.++|++++++++||+..++|.||+++++||.++++..+++||++|+|||+|+++|.++|.+|||+++
T Consensus 949 iGqP~gGFPEPlRs~VLk~~~r~~gRPG~~l~p~Dldai~keL~e~~~~~s~~Dv~sy~myP~Vf~~f~~fr~~yG~ld~ 1028 (1176)
T KOG0369|consen 949 IGQPYGGFPEPLRSKVLKGKPRLTGRPGAELPPLDLDAIRKELQERHGDVSECDVASYAMYPRVFEDFQKFRETYGPLDK 1028 (1176)
T ss_pred cCCCCCCCCchhHHHHhcCCCccCCCCCCcCCccCHHHHHHHHHHhcCCCcHHHhhhhhhccHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhh
Q psy3968 760 LDTRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVA 839 (1080)
Q Consensus 760 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1080)
|||+.|+.|++++|||+|+++.|| +.+||+ +|+ ++.++.
T Consensus 1029 lpTr~FL~~pe~~EE~~Veie~GK-----------TL~ik~---------------------lAv----g~~~~~----- 1067 (1176)
T KOG0369|consen 1029 LPTRLFLTGPEIAEEFEVEIEQGK-----------TLIIKL---------------------LAV----GDLLKK----- 1067 (1176)
T ss_pred cchhhhccCCCcCceEEEEeccCc-----------EEEEEe---------------------eec----cccccc-----
Confidence 999999999999999999999999 999999 666 544433
Q ss_pred hccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccC
Q psy3968 840 HKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGA 919 (1080)
Q Consensus 840 ~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a 919 (1080)
.|. ++++|++||+.|.+ .+.+..+ ......+|+|++++.++|.|
T Consensus 1068 -----------~Gq--------------ReVfFeLNGqlR~i----~v~Dk~a-------~ke~v~~PkA~~~~~g~igA 1111 (1176)
T KOG0369|consen 1068 -----------TGQ--------------REVFFELNGQLRSI----RVADKEA-------AKEIVTRPKADPGVKGHIGA 1111 (1176)
T ss_pred -----------CCc--------------eEEEEEecCceeeE----Eeechhh-------hhhhcccccCCCCCcccccC
Confidence 266 89999999999999 8887765 55677899999999999999
Q ss_pred CCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 920 Pm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
||||+|+++.|++|++|++||+|+++.|||||+.|.||.+|+|+++.+. ++|++||+++++++
T Consensus 1112 PMpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1112 PMPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred CCCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 9999999999999999999999999999999999999999999999999 99999999998863
No 3
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=2.3e-171 Score=1615.31 Aligned_cols=899 Identities=59% Similarity=0.925 Sum_probs=837.8
Q ss_pred CCcchhccceEEEccCC--CCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhc
Q psy3968 1 MHMHRQKADESYLVGKG--LPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMG 78 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~--~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~ 78 (1080)
+|+|+++||++|+++++ ..+..+|+|++.|+++|+++++|+|||||||++|+..+++.|++.|++|+||++++++.++
T Consensus 35 ~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~ 114 (1143)
T TIGR01235 35 LSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLG 114 (1143)
T ss_pred cCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCcccCCCHHHHHHhc
Confidence 37899999999999765 3567899999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN 158 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~ 158 (1080)
||..++++++++|||+||++...+.+.+++.++++++|||+||||+.|+||+|+++|++.+||.++++.+.+++...|++
T Consensus 115 DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~ 194 (1143)
T TIGR01235 115 DKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGN 194 (1143)
T ss_pred CHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999985446789999999999999999999999999999999999999999999999988888999
Q ss_pred CcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Q psy3968 159 GAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTV 238 (1080)
Q Consensus 159 ~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 238 (1080)
+.++||+||+|++|+++++++|++|+++++++|+|+.++++++..+.+|++.++++.+++|++.+.++++++||.|+++|
T Consensus 195 ~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie~aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gtV 274 (1143)
T TIGR01235 195 DEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVEVAPAPYLSREVRDEIAEYAVKLAKAVNYINAGTV 274 (1143)
T ss_pred CcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCC--CCCC-CccccccCeEEEEeeeccCCCCCCC
Q psy3968 239 EFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLP--ELGL-TQEKISPQGFAIQCRVTTEDPAKNF 315 (1080)
Q Consensus 239 Efivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~--~l~~-~~~~i~~~g~ai~~ri~ae~p~~~f 315 (1080)
||++|++|++||||||||++++|++++.++|+|+++.+++++.|.+++ ++++ .|+.+..+|++|+||+++|||.++|
T Consensus 275 EFlvd~dg~~yfIEVNPRiqveh~vTe~vtGiDlv~~qi~iA~G~~L~~~~~~~~~q~~~~~~g~ai~~ri~~edp~~~f 354 (1143)
T TIGR01235 275 EFLVDNDGKFYFIEVNPRIQVEHTVTEEITGIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGYAIQCRVTTEDPANNF 354 (1143)
T ss_pred EEEEeCCCcEEEEEeecCCCcchhHHHHHhCcHHHHHHHHHHcCCCCCccccCCCcccccCCCcEEEEEEEeeecCCCCc
Confidence 999998889999999999999999999999999999999999999998 5554 5778889999999999999999999
Q ss_pred CCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcc
Q psy3968 316 QPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLT 395 (1080)
Q Consensus 316 ~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~ 395 (1080)
.|++|+|..+++|+++|+|+|++..++|+.|+++|||+++|+|++|+||++|+++|.|+|++++|+|++|||+||+++|.
T Consensus 355 ~p~~g~i~~~~~~~g~gvr~d~~~~~~g~~v~~~yds~~~k~~~~~~~~~~a~~~~~~al~e~~i~gv~tn~~~l~~~l~ 434 (1143)
T TIGR01235 355 QPDTGRIEAYRSAGGFGIRLDGGNSYAGAIITPYYDSLLVKVSAWASTPEEAAAKMDRALREFRIRGVKTNIPFLENVLG 434 (1143)
T ss_pred ccCCcEeeEEecCCCCCeEecccccCCCCCcCCcccchhhhheeeCCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhc
Confidence 99999999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCceeeeeecCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCC-------CCCC----
Q psy3968 396 NQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEI-------PLGK---- 464 (1080)
Q Consensus 396 ~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~-------~~G~---- 464 (1080)
||+|++|+++|+||+++|+||.+....+|+++++.|++.+.|||+..... +.++....+.++.+ +.|+
T Consensus 435 ~~~f~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 513 (1143)
T TIGR01235 435 HPKFLDGSYDTRFIDTTPELFQFVKSQDRATKLLTYLADVTVNGHPEAKD-KLKPLENAPRVVVLYADQNPVPRGTKQIL 513 (1143)
T ss_pred CHhhcCCCccchhhhcChhhcCCCcccchhhhHHhHhheeEecCCCCcCC-CCCCCCCCCCCCCCCcccCCCCCChHHHH
Confidence 99999999999999999999999999999999999999999999843111 11111111111111 1221
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 514 ~~~g~~~~~~~~~~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwe 593 (1143)
T TIGR01235 514 DEKGPEGFAEWVRNQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWE 593 (1143)
T ss_pred HhhCHHHHHHHHHhcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 594 rl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~ 673 (1143)
T TIGR01235 594 RLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAIC 673 (1143)
T ss_pred HHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEE
Confidence
Q ss_pred -------------------------------eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHH
Q psy3968 465 -------------------------------LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIA 513 (1080)
Q Consensus 465 -------------------------------~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~ 513 (1080)
+|+||||+|+++|.++++||++||+++ ++||++|||||+|+|+||+++
T Consensus 674 yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~la 752 (1143)
T TIGR01235 674 YTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLA 752 (1143)
T ss_pred EeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHH
Confidence 447999999999999999999999999 899999999999999999999
Q ss_pred HHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccC
Q psy3968 514 CAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNE 593 (1080)
Q Consensus 514 Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 593 (1080)
|++||||+||+|++|||||+|||++|+++++|+++|++|++|+++|.++++||+++|.+|.+|+. .+.++|+.+|.||
T Consensus 753 A~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~~y~~~~~--~~~~~~~~v~~~~ 830 (1143)
T TIGR01235 753 AVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRNLYAAFES--DLKGPASEVYLHE 830 (1143)
T ss_pred HHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCC--CCcCCCcCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999987 4689999999999
Q ss_pred CCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHH
Q psy3968 594 IPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVV 673 (1080)
Q Consensus 594 iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~ 673 (1080)
|||||||||++||+++|+.|||+||+++|++||++|||||||||+||||||||+|||+|+|+++++.++++|++||+||+
T Consensus 831 ~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~~~VTP~Sq~vg~~A~~~v~~~l~~~~v~~~~~~~~~~~~v~ 910 (1143)
T TIGR01235 831 MPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDIVKVTPSSKVVGDMALFMVSNDLTVDDVVEPAEELSFPDSVV 910 (1143)
T ss_pred CCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCceECChhHhHHHHHHHHHHhccChhhhccccccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HhhccccCCCCCCCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHHHHHH
Q psy3968 674 EFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYLTFRE 752 (1080)
Q Consensus 674 ~~~~G~~G~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~~~~~ 752 (1080)
+|++|+||+||+|||++++++||++++++++||+++++|.||++++++++++++. .+|||+|+|+|||+++.+|+++|+
T Consensus 911 ~~~~G~~G~pp~~~~~~~~~~vl~~~~~~~~rp~~~l~p~~~~~~~~~~~~~~~~~~~~ed~~~y~~~p~v~~~~~~~~~ 990 (1143)
T TIGR01235 911 EFLKGDIGQPHGGFPEPLQKKVLKGEKPITVRPGSLLEPADLDAIRKDLQEKHEREVSDFDVASYAMYPKVFTDFAKARD 990 (1143)
T ss_pred HHhCcCCCCCCCCCCHHHHHHHhCCCCCCcCCccccCCcccHHHHHHHHHHHhcCCCCHHHHHHHHcCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776 899999999999999999999999
Q ss_pred hcCCCCCCCccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceeccccccc
Q psy3968 753 SFGPVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLL 832 (1080)
Q Consensus 753 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 832 (1080)
+||+++.|||+.||+|++.+||++|++++|| +++|++ .++ ++++
T Consensus 991 ~~g~~~~~~~~~~~~g~~~~~e~~v~~~~g~-----------~~~i~~---------------------~~~----~~~~ 1034 (1143)
T TIGR01235 991 TYGPVSVLPTPAFFYGLADGEEIEVDIEKGK-----------TLIIKL---------------------QAV----GATD 1034 (1143)
T ss_pred hcCCccccccccccccCCCCcEEEEEecCCc-----------EEEEEe---------------------ccc----cccC
Confidence 9999999999999999999999999999899 999998 444 3333
Q ss_pred ccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCC
Q psy3968 833 KISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKS 912 (1080)
Q Consensus 833 ~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1080)
+. |. +++++++||+.+++ .+.+.+. ......++++++.
T Consensus 1035 ~~-----------------g~--------------r~v~fElNGq~reV----~V~D~s~-------~~~~~~~~KAd~~ 1072 (1143)
T TIGR01235 1035 SQ-----------------GE--------------REVFFELNGQPRRI----KVPDRSH-------KAEAAVRRKADPG 1072 (1143)
T ss_pred CC-----------------Cc--------------EEEEEEECCeEEEE----EecCccc-------ccccccccccccc
Confidence 33 44 88999999999998 6666543 2223446678889
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
++++|.|||||+|++|+|++||+|++||+|++|||||||++|.||.+|+|++++++ +.|+.|++|++|+
T Consensus 1073 ~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1073 NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999874
No 4
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=7.2e-166 Score=1574.66 Aligned_cols=898 Identities=55% Similarity=0.895 Sum_probs=833.4
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+|+|+++||++|+++++..+.++|+|++.|+++|+++++|+|||+|||++|+..+++.|++.|++|+||++++++.++||
T Consensus 41 ~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK 120 (1146)
T PRK12999 41 LSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDK 120 (1146)
T ss_pred CCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCH
Confidence 47999999999999876567789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+||++...+.+.+++.++++++|||+|+||+.|+||+|+++|++.+||.++++.+.+++...|+++.
T Consensus 121 ~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~ 200 (1146)
T PRK12999 121 VAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDE 200 (1146)
T ss_pred HHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999987533688999999999999999999999999999999999999999999999988888898899
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|+++++++|++|+++++++++|++++++++.++.+|++.++++.++++++.+.++++++||+|++++||
T Consensus 201 vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~ie~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gtVEf 280 (1146)
T PRK12999 201 VYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEIAPAPGLSEELRERICEAAVKLARAVGYVNAGTVEF 280 (1146)
T ss_pred EEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCC---CccccccCeEEEEeeeccCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGL---TQEKISPQGFAIQCRVTTEDPAKNFQP 317 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~---~~~~i~~~g~ai~~ri~ae~p~~~f~p 317 (1080)
+++++|++||||||||++++|++++.++|+|++++++++++|.+++...+ .|+.+..+|++|+||+++|||.++|.|
T Consensus 281 lvd~dg~~yfIEINpRlqveh~vte~~tGvDlv~~~iriA~G~~l~~~~~~~~~q~~~~~~g~Ai~~ri~aedp~~~f~P 360 (1146)
T PRK12999 281 LVDADGNFYFIEVNPRIQVEHTVTEEVTGIDIVQSQILIAEGATLHDLEIGIPSQEDIRLRGYAIQCRITTEDPANNFMP 360 (1146)
T ss_pred EEECCCCEEEEEEECCCCCcchHHHHHhCcCHHHHHHHHHCCCCCCccccccccccccccceeEEEEEEEeecCccCccC
Confidence 99988789999999999999999999999999999999999999876543 577788889999999999999999999
Q ss_pred CCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccc
Q psy3968 318 DTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQ 397 (1080)
Q Consensus 318 ~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~ 397 (1080)
++|+|..++.|+++|+|+|.+..+.|..++++||+++++||++|+|+++|+++|.+||++++|+|++|||+||+++|.||
T Consensus 361 ~~G~i~~~~~p~~~~vr~d~~~~~~g~~v~~~~Ds~l~kvi~~g~~~~~A~~~~~~aL~~~~i~gv~tn~~~l~~~~~~~ 440 (1146)
T PRK12999 361 DTGRITAYRSPGGFGVRLDGGNAFAGAEITPYYDSLLVKLTAWGRTFEQAVARMRRALREFRIRGVKTNIPFLENVLKHP 440 (1146)
T ss_pred CCcEEEEEEcCCCCcEEeeccccCCCCeeCCCccCCceEEEEEcCCHHHHHHHHHHHHhhcEEecccCcHHHHHHHhCCH
Confidence 99999999999999999999877899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeeecCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCC------CCCC-------
Q psy3968 398 KFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEI------PLGK------- 464 (1080)
Q Consensus 398 ~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~------~~G~------- 464 (1080)
+|++|+++|+||+++|+||.++...+++++++.|++.+.|||+..... .++....+.++.+ +.|+
T Consensus 441 ~f~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1146)
T PRK12999 441 DFRAGDYTTSFIDETPELFDFPKRRDRGTKLLTYIADVTVNGFPGVKK--KPPVFPDPRLPKVDLSAPPPAGTKQILDEL 518 (1146)
T ss_pred hhcCCCccchhhhcChhhhhCCcccccHHHHHhhhheeEEeCCCCccC--CCCCCCCCCCCCCCCCCCCCCchHHHhhhc
Confidence 999999999999999999999999999999999999999999843211 1111111111111 0121
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 519 g~~~~~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~ 598 (1146)
T PRK12999 519 GPEGFADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLA 598 (1146)
T ss_pred CHHHHHHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 599 ~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg 678 (1146)
T PRK12999 599 ELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTG 678 (1146)
T ss_pred HHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEe
Confidence
Q ss_pred ----------------------------eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHH
Q psy3968 465 ----------------------------LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAE 516 (1080)
Q Consensus 465 ----------------------------~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~ 516 (1080)
+|+||||+|+++|.++++||++||+++ ++||++|||||+|||+||+++|++
T Consensus 679 ~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~ 757 (1146)
T PRK12999 679 DILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAE 757 (1146)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHH
Confidence 447999999999999999999999999 899999999999999999999999
Q ss_pred cCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCC
Q psy3968 517 AGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPG 596 (1080)
Q Consensus 517 aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPG 596 (1080)
||||+||+|++|||+|+|||+||+++++|+.+|++|++|++.|.++++||+++|++|.+|++ .+.++++++|.|||||
T Consensus 758 aGad~vD~av~glg~~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~~~~~--~~~~~~~~v~~~~~PG 835 (1146)
T PRK12999 758 AGVDIVDVAVASMSGLTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYAPFES--GLKSPTTEVYLHEMPG 835 (1146)
T ss_pred hCCCEEEecchhhcCCcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhhccCC--CCCCCCcCeEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 4689999999999999
Q ss_pred chhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhh
Q psy3968 597 GQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFL 676 (1080)
Q Consensus 597 G~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~ 676 (1080)
||||||++||+++|+.|||+||+++|++||++|||||||||+||||||||+|||+|.|+.+++.+++++++||+||++|+
T Consensus 836 G~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~ 915 (1146)
T PRK12999 836 GQYSNLKQQARALGLGDRFEEVKEMYAAVNRMFGDIVKVTPSSKVVGDMALFMVQNGLTPEDVYEPGEDLDFPDSVVSFL 915 (1146)
T ss_pred cccchHHHHHHHCChHhHHHHHHHHHHHHHHHcCCCceeCccchhhHHHHHHHHhhccchhhhhccCceeeCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988887889999999999
Q ss_pred ccccCCCCCCCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHHHHHHhcC
Q psy3968 677 QGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYLTFRESFG 755 (1080)
Q Consensus 677 ~G~~G~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~~~~~~~~ 755 (1080)
+|+||+||+|||++++++||+|++++++||+++++|.||+++++++.+++++ .+|||+|+|+|||+++.+|+++|++||
T Consensus 916 ~G~~G~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g 995 (1146)
T PRK12999 916 KGELGQPPGGFPEPLQKKVLKGEEPITVRPGELLEPVDFEAERAELEEKLGREVTDRDVLSYLLYPKVFEDYIKHREEYG 995 (1146)
T ss_pred CcCCCCCCCCCCHHHHHHHhCCCCCCcCChhhhCCcccHHHHHHHHHHHhcCCCCHHHHHHHHhCcHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998999999999998876 899999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccc
Q psy3968 756 PVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKIS 835 (1080)
Q Consensus 756 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 835 (1080)
+++.|||+.||+|+++|||+++++++|| +++|++ .++ ++.++.
T Consensus 996 ~~~~~~~~~~~~g~~~~e~~~~~~~~gk-----------~~~i~~---------------------~~~----~~~~~~- 1038 (1146)
T PRK12999 996 DVSVLPTPTFFYGLRPGEEIEVEIEPGK-----------TLIIKL---------------------EAI----GEPDED- 1038 (1146)
T ss_pred CcccCCCchhhcccCcCceEEeecCCCc-----------eeEEEe---------------------ecc----cCcccC-
Confidence 9999999999999999999999999999 888888 444 333332
Q ss_pred hhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCC
Q psy3968 836 PFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPG 915 (1080)
Q Consensus 836 ~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1080)
|. +++++++||+.++| .+.+.+.. .....++++++.++.
T Consensus 1039 ----------------g~--------------~~~~~~vnG~~~~V----~v~d~~~~-------~~~~~~~~a~~~~~~ 1077 (1146)
T PRK12999 1039 ----------------GM--------------RTVYFELNGQPREV----QVRDRSVK-------STVAAREKADPGNPG 1077 (1146)
T ss_pred ----------------Cc--------------EEEEEEECCEEEEE----EEecCccc-------cccccccccCCCCCc
Confidence 44 88999999999999 77765431 112345667788899
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+|.|||||+|++|+|++||.|++||+|+++||||||++|.||.+|+|+++.++ +.|+.|++|++|+
T Consensus 1078 ~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1078 HVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEeCCceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999998 9999999999884
No 5
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=100.00 E-value=5.4e-97 Score=830.61 Aligned_cols=411 Identities=51% Similarity=0.871 Sum_probs=402.5
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|+++|||+|.||+. ++.+|||+++.|++.|++.+.++|||||||||||+.|+++|++.|+.|+||++.+++.++||
T Consensus 38 ~A~hV~~ADEAv~iGpa-paaeSYL~~dkIi~Aa~~tGA~AIHPGYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK 116 (645)
T COG4770 38 DALHVRMADEAVHIGPA-PAAESYLDIDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDK 116 (645)
T ss_pred CchhhhhcchhhhcCCC-chhhhhccHHHHHHHHHHhCcccccCCccccccCHHHHHHHHHCCcEEECCCHHHHHHhccH
Confidence 58999999999999875 77899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|.++.++|+|+.|++...+.+.+++..+++++|||++||++.|+||+||+++++.+|+.++++.++++++.+||++.
T Consensus 117 ~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddr 196 (645)
T COG4770 117 IAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDR 196 (645)
T ss_pred HHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCce
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+|||+|+..|||+++|+++|++|+++++++|+||+||+|||+++.+|+|.++++++++|.+.+.+++++.||.|.++|||
T Consensus 197 v~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEF 276 (645)
T COG4770 197 VFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEF 276 (645)
T ss_pred EehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++.++.|||+|||+|+|++|++||.+||+||+++|++++.|++|+ +.|++++.+||++++|+|+|||.++|.|++|
T Consensus 277 ivd~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA~GekL~---~~Q~di~l~GhAiE~RiyAEDp~r~FLPs~G 353 (645)
T COG4770 277 IVDADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVASGEKLP---FTQDDIPLNGHAIEARIYAEDPARGFLPSTG 353 (645)
T ss_pred EEcCCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHhcCCcCC---cccccccccceeEEEEEeccCcccCccCCCc
Confidence 9999999999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
++..++.|.++++|+|++ +..|+.|+++|||||+|+|+||.||++|++++.++|+++.|.|+.||++||+.++.||.|+
T Consensus 354 ~l~~~~~P~~~~vRvDsG-V~~G~~Is~~YDpMiAKLi~~G~dR~eAl~rl~~AL~~~~v~Gi~tn~~Fl~al~~~~~F~ 432 (645)
T COG4770 354 RLTRYRPPAGPGVRVDSG-VREGDEISPFYDPMIAKLIVHGADREEALDRLRRALAEFEVEGIATNIPFLRALMADPRFR 432 (645)
T ss_pred eeEeecCCCCCceecccC-cccCCccccccchHHHHHhhcCCCHHHHHHHHHHHHHhhEecCccccHHHHHHHhcCcccc
Confidence 999999999999999997 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC-cccc
Q psy3968 401 NGAVDTYFIDEN-PQLF 416 (1080)
Q Consensus 401 ~g~~~T~fie~~-~elf 416 (1080)
.|..+|.||.++ +++|
T Consensus 433 ~g~~~T~~i~r~~~~~~ 449 (645)
T COG4770 433 GGDLDTGFIAREIEDLF 449 (645)
T ss_pred cCCCcceeeeecccccc
Confidence 999999999875 5555
No 6
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=6.2e-96 Score=869.53 Aligned_cols=422 Identities=28% Similarity=0.428 Sum_probs=386.5
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHH
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGA 540 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~ 540 (1080)
+| ++||||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|++||||+||+|++|||+|+|||+||+
T Consensus 166 ~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~ 244 (596)
T PRK14042 166 MGCDSIAIKDMAGLLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEA 244 (596)
T ss_pred cCCCEEEeCCcccCCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHH
Confidence 67 7999999999999999999999999998 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHH
Q psy3968 541 VVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKK 620 (1080)
Q Consensus 541 ~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~ 620 (1080)
++++|+.+|++|++|+++|.++++||+++|++|.+|++ .+.++|+.+|.|||||||+|||++||+++|+.|||+||++
T Consensus 245 lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~--~~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~~ev~~ 322 (596)
T PRK14042 245 LVAALTDTPYDTELDLNILLEIDDYFKAVRKKYSQFES--EAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDAVHK 322 (596)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhcCC--ccccCCcceeecCCCcchhhHHHHHHHHCCcHhHHHHHHH
Confidence 99999999999999999999999999999999999976 4678999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCCCChhHHhhhhcCCC
Q psy3968 621 AYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMP 700 (1080)
Q Consensus 621 ~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~~~~~~~~~~l~~~~ 700 (1080)
||++||++|||||||||+|||||+||+| |+|+|+|| ++||+||++|++|+||+||+|||++++++||++++
T Consensus 323 e~~~v~~~lG~~~~VTP~Sqivg~qA~~---Nvl~g~r~------~~~~~~v~~~~~G~~G~pp~~~~~~l~~~il~~~~ 393 (596)
T PRK14042 323 EIPRVRKDLGYPPLVTPTSQVVGTQAVI---NVLTGERY------KTITNEVKLYCQGKYGTPPGKISSALRKKAIGRTE 393 (596)
T ss_pred HHHHHHHHcCCCCeECCcCcEEEEEehh---hccChhhe------eECCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCC
Confidence 9999999999999999999999999977 77899986 58999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcchHHHHHHHHhhCCCCChHHHHHHhcCChhhHHHHHHHHhcCCCCCCCccccccCCCCCc----eEE
Q psy3968 701 RIEGRPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTGPKVGE----EFE 776 (1080)
Q Consensus 701 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~ed~l~~~~~p~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~ 776 (1080)
++++||+++++| +++++++++.+. ..+|||||+|+|||+++.+|+++|++ ...+|++.|++|++.++ ||+
T Consensus 394 ~~~~rp~~~~~~-~~~~~~~~~~~~--~~~~ed~l~y~l~p~v~~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~~ 467 (596)
T PRK14042 394 VIEVRPGDLLPN-ELDQLQNEISDL--ALSDEDVLLYAMFPEIGRQFLEQRKN---NQLIPEPLLTQSSAPDNSVMSEFD 467 (596)
T ss_pred CCcCCccccCCc-CHHHHHHHHhhc--cCCHHHHHHHHhCcHHHHHHHHHHhc---cccCCccccccccccCCCCceEEE
Confidence 999999999997 899999998875 47999999999999999999999987 45788999888877666 889
Q ss_pred EEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccc
Q psy3968 777 VKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATF 856 (1080)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~ 856 (1080)
|+ .+|| +++|++ .++ ++ .+ .|.
T Consensus 468 v~-~~Gk-----------~~~Ikl---------------------~~~----g~-~~-----------------~G~--- 489 (596)
T PRK14042 468 II-LHGE-----------SYHVKV---------------------AGY----GM-IE-----------------HGQ--- 489 (596)
T ss_pred EE-ECCE-----------EEEEEE---------------------ecc----cc-cc-----------------CCc---
Confidence 98 4598 899998 333 11 11 144
Q ss_pred hheecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCee
Q psy3968 857 DVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKV 936 (1080)
Q Consensus 857 ~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V 936 (1080)
+++++++||+.+.+ .+.+.++ ......++++++.++++|+|||||+|++|+|++||.|
T Consensus 490 -----------r~v~fevng~~r~v----~v~d~~~-------~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~Gd~V 547 (596)
T PRK14042 490 -----------QSCFLWVDGVPEEV----VVQHSEL-------HDKIERSSVNNKIGPGDITVAIPGSIIAIHVSAGDEV 547 (596)
T ss_pred -----------eEEEEEEcCcccee----ecccccc-------cccccccccCCCCCCCeEecCcceEEEEEEeCCCCEe
Confidence 89999999999988 5555433 1222345567778899999999999999999999999
Q ss_pred ecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 937 EKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 937 ~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
++||+|++|||||||++|+||.+|+|++++++ +.|..|++|+.|+
T Consensus 548 ~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 548 KAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred CCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 99999999999999999999999999999999 9999999999985
No 7
>KOG0238|consensus
Probab=100.00 E-value=8.3e-93 Score=781.99 Aligned_cols=415 Identities=47% Similarity=0.792 Sum_probs=403.9
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+|+|+++||++||+|++ +...+||+.+.|++.|++.++.+|||||||||||..|++.|+..|+.|+||++.+++.++||
T Consensus 34 ~SlHVk~ADeav~ig~a-~~~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K 112 (670)
T KOG0238|consen 34 NSLHVKMADEAVCIGPA-PAAQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAEFAELCEDAGITFIGPPPSAIRDMGDK 112 (670)
T ss_pred ccceeecccceeecCCC-chhhhhhhHHHHHHHHHhcCCceecCCccccccchHHHHHHHHcCCeEECCCHHHHHHhcch
Confidence 68999999999999875 67799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
...|++++++|+|+.|++.....|.+++.+.++++|||+|||+..|+||+|+|++.+++|+++.++.+++++.++||++.
T Consensus 113 ~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~ 192 (670)
T KOG0238|consen 113 STSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDG 192 (670)
T ss_pred HHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcch
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+.|||+++|+++|++|+.+++++|+|++||++|++++.+|+|.++++.+.+|.+.|+++++++||.|+++|||
T Consensus 193 ~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEF 272 (670)
T KOG0238|consen 193 MLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEF 272 (670)
T ss_pred hhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
++|+.++|||+|||+|+|++|++||++||+||+++++++|.|++++ +.|+.+..+||+++||+|+|||.++|.|++|
T Consensus 273 i~D~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA~ge~lp---~~q~ei~l~GhafE~RiyAEdp~~~f~P~~G 349 (670)
T KOG0238|consen 273 IVDSKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVAAGEPLP---LKQEEIPLNGHAFEARIYAEDPYKGFLPSAG 349 (670)
T ss_pred EEcCCCcEEEEEeeceeeecccchhhccchHHHHHHHHHhcCCCCC---CCcceeeecceEEEEEEeecCCcccCCCCCc
Confidence 9999999999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred ceEEEEcCC-cceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccc
Q psy3968 321 RIEVFRSGE-GMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKF 399 (1080)
Q Consensus 321 ~i~~~~~~~-~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F 399 (1080)
++..+..|. .+++|+|++ +++|+.|+++|||+|+++++||.||++|+.++.++|++..|+|+.|||+||++++.|+.|
T Consensus 350 ~L~~~~~p~~~~~vRvdtg-V~~g~~vs~~YDpmiaKlvvwg~dR~~Al~kl~~aL~~~~I~Gv~tnI~~l~~i~~~~~F 428 (670)
T KOG0238|consen 350 RLVYYSFPGHSPGVRVDTG-VRSGDEVSIHYDPMIAKLVVWGKDREEALNKLKDALDNYVIRGVPTNIDFLRDIISHPEF 428 (670)
T ss_pred cceeeccCCCCCCeeeecC-cccCCcccccccchheeeeEecCCHHHHHHHHHHHHhhcEEecCccchHHHHHHhcChhh
Confidence 999998885 689999997 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeecCC-ccccccCC
Q psy3968 400 VNGAVDTYFIDEN-PQLFTLQP 420 (1080)
Q Consensus 400 ~~g~~~T~fie~~-~elf~~~~ 420 (1080)
..|+++|.||.++ +++|....
T Consensus 429 ~~g~V~T~fi~~~~~elf~~~~ 450 (670)
T KOG0238|consen 429 AKGNVSTKFIPEHQPELFAPES 450 (670)
T ss_pred hcCccccccchhcCccccCccc
Confidence 9999999999887 77776644
No 8
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=2e-91 Score=836.28 Aligned_cols=426 Identities=29% Similarity=0.423 Sum_probs=371.7
Q ss_pred CCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCC
Q psy3968 451 AEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528 (1080)
Q Consensus 451 ~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~g 528 (1080)
+++..++..+. +| ++|+||||+|+++|.+++++|++||+.+ ++||++|||||+|||+||+++|++|||++||+|++|
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~G 227 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISS 227 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEecccc
Confidence 33444444333 67 7999999999999999999999999999 599999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHH
Q psy3968 529 MSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYS 608 (1080)
Q Consensus 529 lg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~ 608 (1080)
||+|+|||+||+++++|+.+|++|++|+++|.++++||++++++|.+|++ .++++++++|.|||||||+|||++||++
T Consensus 228 lG~~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~~Y~~~~~--~~~~~~~~v~~~e~pGG~~snl~~ql~~ 305 (582)
T TIGR01108 228 MSGGTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRKKYSQFEG--QLKGPDSRILVAQVPGGMLSNLESQLKE 305 (582)
T ss_pred ccccccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHhhcCCC--cccCCCccEEEEcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 4789999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCCCC
Q psy3968 609 LGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFP 688 (1080)
Q Consensus 609 ~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~~~ 688 (1080)
+|+.|+|++|+++|++||++|||||||||+|||||+||+| |+|+|+|| +++|+||++|++|+||+||+|||
T Consensus 306 ~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~---nvl~~~r~------~~~~~~~~~~~~G~~G~~p~~~~ 376 (582)
T TIGR01108 306 QNALDKLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVL---NVLTGERY------KTITKETKGYLKGEYGRTPAPIN 376 (582)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeECCccHHHHHHHHH---hhcCHHhh------eeCCHHHHHHhCcCCCCCCCCCC
Confidence 9999999999999999999999999999999999999987 66799987 48999999999999999999999
Q ss_pred hhHHhhhhcCCCcc-cCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHHHHHHhcCCCCCCCccccc
Q psy3968 689 EPLRSKVLKDMPRI-EGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFL 766 (1080)
Q Consensus 689 ~~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~~~~~~~~~~~~~~~~~~~ 766 (1080)
++++++||++++++ ++||+++++| +|+++|++|+++++. .+|||||+|+|||+++.+|+++|++| .|+
T Consensus 377 ~~~~~~~l~~~~~~~~~rp~~~~~~-~~~~~~~~~~~~~~~~~~~e~~l~~~~~p~~~~~~~~~~~~~---------~~~ 446 (582)
T TIGR01108 377 AELQRKILGDEKPIVDCRPADLLEP-ELDKLRAEVREAGAEKNSIEDVLTYALFPQVGLKFLENRHNP---------AAF 446 (582)
T ss_pred HHHHHHHhCCCCCcCCCCcccccCc-hHHHHHHHHHHhcccCCCHHHHHHHHhccHHHHHHHHhhhcc---------ccc
Confidence 99999999998888 9999999999 599999999998766 79999999999999999999999875 466
Q ss_pred cCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccc
Q psy3968 767 TGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLY 846 (1080)
Q Consensus 767 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (1080)
+|+++++++. + .++++ .+. ++++.
T Consensus 447 ~~~~~~~~~~---~---------------~~~~~---------------------~~~-----~~~~~------------ 470 (582)
T TIGR01108 447 EPKPEEKVIE---Q---------------EHAQV---------------------VGK-----YEETH------------ 470 (582)
T ss_pred cCCCCcchhh---h---------------hhhhc---------------------ccc-----ccccC------------
Confidence 7777776544 1 12222 111 00111
Q ss_pred eeeccCCccchheecccccCCeEEEEEECCccccccccceeccccccccccC-C-CCccccCCCcCCCCCCcccCCCCeE
Q psy3968 847 SLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNY-P-DNEMHIHPKAAKSVPGQVGAPMPGS 924 (1080)
Q Consensus 847 ~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~v~aPm~G~ 924 (1080)
| .+++++++||+.+.| .+.+.+....... . ......+++++.+++++|+|||||+
T Consensus 471 -----g--------------~~~~~~~vnG~~~~V----~v~d~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~ 527 (582)
T TIGR01108 471 -----A--------------SGSYTVEVEGKAFVV----KVSPGGDVSQITASAPANTSGGTVAAKAGAGTPVTAPIAGS 527 (582)
T ss_pred -----C--------------ceEEEEEECCEEEEE----EEcCCccccccccccccccccccccCCCCCCCeEeCCccEE
Confidence 2 378899999999999 6665543211110 0 1111134456677889999999999
Q ss_pred EEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCcee
Q psy3968 925 VMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAV 977 (1080)
Q Consensus 925 v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l 977 (1080)
|++|+|++||+|++||+|++|||||||++|.||.+|+|+++.++ +.|+.|++|
T Consensus 528 v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 528 IVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred EEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 99999999999999999999999999999999999999999999 999999976
No 9
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=1.2e-90 Score=832.34 Aligned_cols=420 Identities=31% Similarity=0.455 Sum_probs=388.0
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHH
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGA 540 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~ 540 (1080)
+| ++|+||||+|+++|.++++||+++|+++ ++||++|||||.|||+||+++|++||||+||+|++|||+|+|||+||+
T Consensus 166 ~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~agn~~~e~ 244 (592)
T PRK09282 166 MGCDSICIKDMAGLLTPYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTES 244 (592)
T ss_pred cCCCEEEECCcCCCcCHHHHHHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHH
Confidence 56 7999999999999999999999999999 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHH
Q psy3968 541 VVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKK 620 (1080)
Q Consensus 541 ~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~ 620 (1080)
++++|+..|+++++|++.|.++++||+++++.|.+|++ .++++++++|.|||||||+|||++||+++|++|+|++|++
T Consensus 245 vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~--~~~~~~~~v~~~~~pGg~~snl~~q~~~~g~~d~~~~vl~ 322 (592)
T PRK09282 245 MVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFES--EFTIVDTRVLIHQVPGGMISNLVSQLKEQNALDKLDEVLE 322 (592)
T ss_pred HHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCC--ccccCCccEEEEcCCCcHHHHHHHHHHHCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999886 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCCCChhHHhhhhcCCC
Q psy3968 621 AYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMP 700 (1080)
Q Consensus 621 ~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~~~~~~~~~~l~~~~ 700 (1080)
+|++||++|||||||||+|||||+||+||| ++|+| |++||+||++|++|+||+||+|||++++++||++++
T Consensus 323 e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nv---~~~~~------~~~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~ 393 (592)
T PRK09282 323 EIPRVREDLGYPPLVTPTSQIVGTQAVLNV---LTGER------YKVITKEVKDYVKGLYGRPPAPINEELRKKIIGDEE 393 (592)
T ss_pred HHHHHHHHcCCCCeECChhHhHHHHHHHHH---HcCCc------cccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCC
Confidence 999999999999999999999999999865 46676 469999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcchHHHHHHHHhhCCCCCh-HHHHHHhcCChhhHHHHHHHHhcCCCC--CCCccccccCCCCCceEEE
Q psy3968 701 RIEGRPGASLPPFDFGKLKTELQERHPEATD-RDVMSAALYPQVTEDYLTFRESFGPVD--KLDTRIFLTGPKVGEEFEV 777 (1080)
Q Consensus 701 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~-ed~l~~~~~p~~~~~f~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~ 777 (1080)
++++||+++++| +|+++|+++++.++ ++ ||||+|+|||+++.+|+++|++||+++ .+||+.|+.|++.++++++
T Consensus 394 ~~~~rp~~~~~p-~~~~~~~~~~~~~~--~~~e~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (592)
T PRK09282 394 PITCRPADLLEP-ELEKARKEAEELGK--SEKEDVLTYALFPQIAKKFLEEREAGELKPEPEPKEAAAAGAEGIPTEFKV 470 (592)
T ss_pred CCcCCcccccCC-CHHHHHHHHHHHhc--CCHHHHHHHHhCcHHHHHHHHHHhccCCcccccCCccccccCCCCCeEEEE
Confidence 999999999999 99999999998764 44 999999999999999999999999987 8999999999999999999
Q ss_pred EecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccch
Q psy3968 778 KIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFD 857 (1080)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~ 857 (1080)
.++ || +++|++ .++ +++
T Consensus 471 ~i~-Gk-----------~~~i~~---------------------~~~----g~~-------------------------- 487 (592)
T PRK09282 471 EVD-GE-----------KYEVKI---------------------EGV----KAE-------------------------- 487 (592)
T ss_pred EEC-CE-----------EEEEEE---------------------eec----cCC--------------------------
Confidence 998 99 899998 322 110
Q ss_pred heecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeee
Q psy3968 858 VALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVE 937 (1080)
Q Consensus 858 ~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~ 937 (1080)
+.+++.+++||+.+++ .+.+.+.. ....++++.++..|+|||+|+|++|+|++||.|+
T Consensus 488 --------~~r~~~~~~ng~~~~v----~v~d~~~~----------~~~~~~~~~~~~~V~Ap~~G~v~~~~V~~Gd~V~ 545 (592)
T PRK09282 488 --------GKRPFYLRVDGMPEEV----VVEPLKEI----------VVGGRPRASAPGAVTSPMPGTVVKVKVKEGDKVK 545 (592)
T ss_pred --------CcceEEEEecCceeee----eccCcccc----------cccccCCCCCCceEeCCCcEEEEEEEeCCCCEEC
Confidence 1278899999999998 55554321 0011566778899999999999999999999999
Q ss_pred cCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 938 KGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 938 ~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+||+|++||+|||+++|+||.+|+|+++.++ +.|+.|++|++|+
T Consensus 546 ~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 546 AGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 9999999999999999999999999999999 9999999999885
No 10
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.1e-89 Score=819.18 Aligned_cols=423 Identities=28% Similarity=0.402 Sum_probs=365.9
Q ss_pred CCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCC
Q psy3968 451 AEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528 (1080)
Q Consensus 451 ~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~g 528 (1080)
+++...+..+. +| ++|+||||+|+++|.++++||++||+.+ ++||++|||||+|||+||+++|++|||++||+|++|
T Consensus 155 ~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~g 233 (593)
T PRK14040 155 QTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISS 233 (593)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEEecccc
Confidence 34444444444 78 8999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHH
Q psy3968 529 MSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYS 608 (1080)
Q Consensus 529 lg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~ 608 (1080)
||+|+|||++|+++++|+.+|+++++|++.|.++++||+++++.|.+|++ .++++++++|.|||||||+|||.+||++
T Consensus 234 lG~~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~Y~~~~~--~~~~~~~~v~~~e~PGG~~Snl~~ql~~ 311 (593)
T PRK14040 234 MSMTYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVRKKYAKFEG--QLKGVDSRILVAQVPGGMLTNMESQLKE 311 (593)
T ss_pred ccccccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHhccCCc--ccccCcccEEEEcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 4789999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCCCC
Q psy3968 609 LGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFP 688 (1080)
Q Consensus 609 ~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~~~ 688 (1080)
+|+.|+|++|+++|++||++|||||||||+|||||+||+| |+|+|+|| +++|+||++|++|+||+||+|||
T Consensus 312 ~g~~~~~~evl~e~~~v~~~lG~~~~VTP~Sqivg~~A~~---N~l~~~r~------~~~~~~v~~~~~G~~G~~p~~~~ 382 (593)
T PRK14040 312 QGAADKLDEVLAEIPRVREDLGFIPLVTPTSQIVGTQAVL---NVLTGERY------KTITKETAGVLKGEYGATPAPVN 382 (593)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeECChhHHHHHHHHH---hcCChHhh------eeCCHHHHHHhCcCCCCCCCCCC
Confidence 9999999999999999999999999999999999999987 77899987 49999999999999999999999
Q ss_pred hhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhC---CC-C---ChHHHHHHhcCChhhHHHHHHHHhcCCCCCCC
Q psy3968 689 EPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERH---PE-A---TDRDVMSAALYPQVTEDYLTFRESFGPVDKLD 761 (1080)
Q Consensus 689 ~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~---~~-~---~~ed~l~~~~~p~~~~~f~~~~~~~~~~~~~~ 761 (1080)
++++++||++++++++||+++++| +|+++|+++++++ +. . ++||||+|+|||+++.+|+++|++
T Consensus 383 ~~~~~~~l~~~~~~~~rp~~~~~p-~~~~~~~~~~~~~~~~~~~~~~e~~e~~l~~~~~p~v~~~f~~~~~~-------- 453 (593)
T PRK14040 383 AELQARVLEGAEPITCRPADLLAP-ELDKLEAELRRQAQEKGITLAENAIDDVLTYALFPQIGLKFLENRHN-------- 453 (593)
T ss_pred HHHHHHHhCCCCCCcCChhhhcCc-hHHHHHHHHHHHhhhcCCCcccCCHHHHHHHHhccHHHHHHHHhhcc--------
Confidence 999999999999999999999999 5999999998765 32 3 458999999999999999999974
Q ss_pred ccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhc
Q psy3968 762 TRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHK 841 (1080)
Q Consensus 762 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1080)
+.||.|++.+++..+. +. ..
T Consensus 454 -~~~~~~~~~~~~~~~~---~~-----------------------------------------------~~--------- 473 (593)
T PRK14040 454 -PAAFEPVPQAEAAQPA---AK-----------------------------------------------AE--------- 473 (593)
T ss_pred -cccccCCCcccccccc---cc-----------------------------------------------CC---------
Confidence 3566666655432211 00 00
Q ss_pred cCccceeeccCCccchheecccccCCeEEEEEECCccccccccceecccccc--ccccC-CCCccccCCCc-CCCCCCcc
Q psy3968 842 FNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAV--GYTNY-PDNEMHIHPKA-AKSVPGQV 917 (1080)
Q Consensus 842 ~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~--~~~~~-~~~~~~~~~~~-~~~~~~~v 917 (1080)
...++++.+++||+.+.+ .+.+.+.. ..... .......++++ +++++.+|
T Consensus 474 ----------------------e~g~~~~~~~vnG~~~~V----~v~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~V 527 (593)
T PRK14040 474 ----------------------PAGSETYTVEVEGKAYVV----KVSEGGDISQITPAAPAAAPAAAAAAAPAAAAGEPV 527 (593)
T ss_pred ----------------------CCCCeEEEEEECCEEEEE----EECCCCccccccccccccccccccccccCCCCCceE
Confidence 012267888889988888 66554310 00000 00111112233 45567799
Q ss_pred cCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 918 GAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 918 ~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
+|||+|+|++|+|++||.|++||+|++||||||+++|.||.+|+|+++.++ +.|..|++|++|
T Consensus 528 ~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 592 (593)
T PRK14040 528 TAPLAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTL 592 (593)
T ss_pred ECCccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEe
Confidence 999999999999999999999999999999999999999999999999999 999999999987
No 11
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.6e-79 Score=665.90 Aligned_cols=326 Identities=32% Similarity=0.466 Sum_probs=289.2
Q ss_pred ccccccCCcchHHHHHHHhhheeeecCC----CCCCCCCCCCCCCC----CCCCCCC-CC-CeeeeccccCccChHHHHH
Q psy3968 413 PQLFTLQPTKNRAQKLLNYLGTVLVNGP----STPLATPLLPAEVT----PPVPEIP-LG-KLINTFDMAGLLKPRAAKL 482 (1080)
Q Consensus 413 ~elf~~~~~~dra~~L~~yla~V~Vng~----~~p~~~~~~~~~~~----~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~ 482 (1080)
.+.|++....+..+.+..++.++...|- ...|. .+|.+.. .++.++. +| ++||||||+|+++|..+|+
T Consensus 112 idvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT--~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~aye 189 (472)
T COG5016 112 IDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYT--TSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYE 189 (472)
T ss_pred CcEEEechhccchhHHHHHHHHHHhcCceeEEEEEec--cCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHH
Confidence 5567766666666666666666553331 01121 2233322 2333444 89 8999999999999999999
Q ss_pred HHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHH
Q psy3968 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAY 562 (1080)
Q Consensus 483 lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~ 562 (1080)
||+++|+.+ ++||++|||+|.|||.+++++|++||||+||+++++|++++|||++|+++++|++++++||+|++.+.++
T Consensus 190 lVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~ 268 (472)
T COG5016 190 LVKAIKKEL-PVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEI 268 (472)
T ss_pred HHHHHHHhc-CCeeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHH
Confidence 999999999 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc-CCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchh
Q psy3968 563 SAYWEQTRQLY-APFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKV 641 (1080)
Q Consensus 563 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqi 641 (1080)
++||.++|++| .-|+. ...++|++++.|||||||+|||.+||++||++|+++||++|+||||+||||||+|||+|||
T Consensus 269 ~~yf~~vrkkY~~~~~~--~~~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eVLeEvprVredlGypPLVTPtSQi 346 (472)
T COG5016 269 AEYFREVRKKYKGLLEP--QAKGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEVLEEVPRVREDLGYPPLVTPTSQI 346 (472)
T ss_pred HHHHHHHHHHHhhccCc--cccCCCCcceEeeCChHHHHHHHHHHHHcchhhHHHHHHHHhHHHHhhcCCCCccCchhhh
Confidence 99999999999 45555 3577899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCCCChhHHhhhhcC-CCcccCCCCCCCCCcchHHHHH
Q psy3968 642 VGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKD-MPRIEGRPGASLPPFDFGKLKT 720 (1080)
Q Consensus 642 vg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~~~~~~~~~~l~~-~~~~~~~p~~~~~~~~~~~~~~ 720 (1080)
||+||++ |||+|||| +.|++|+++|++|+|||||+|++++++++||++ .++++|||+|+++| +++++++
T Consensus 347 VGtQAvl---NVl~GerY------K~It~E~~~yv~G~YGrtPapi~~el~~~ilg~~~~~i~~RpADll~p-e~~k~k~ 416 (472)
T COG5016 347 VGTQAVL---NVLTGERY------KVITKETKDYVKGLYGRTPAPINAELIEKILGDEEKPITCRPADLLEP-ELDKLKK 416 (472)
T ss_pred hhHHHHH---HHHhcchh------hHHHHHHHHHhccccCCCCCCCCHHHHHHHhCCCCCcccCChhhhcch-HHHHHHH
Confidence 9999966 66799997 489999999999999999999999999999999 58999999999999 8999999
Q ss_pred HHHhhCCCCChHHHHHHhcCChhhHHHHHHHHh
Q psy3968 721 ELQERHPEATDRDVMSAALYPQVTEDYLTFRES 753 (1080)
Q Consensus 721 ~l~~~~~~~~~ed~l~~~~~p~~~~~f~~~~~~ 753 (1080)
|+++.+....+||||+|||||+++.+||+.|.+
T Consensus 417 e~~~~~~~~~eeDVLtyalfp~va~~Fl~~r~~ 449 (472)
T COG5016 417 ELEELAIEEEEEDVLTYALFPQVAKKFLEGREK 449 (472)
T ss_pred HHHHHhhhcccccchhhhhhHHHHHHHHhcccc
Confidence 999987667789999999999999999999975
No 12
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=4.1e-75 Score=670.46 Aligned_cols=292 Identities=30% Similarity=0.411 Sum_probs=274.0
Q ss_pred CCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCC
Q psy3968 453 VTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMS 530 (1080)
Q Consensus 453 ~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg 530 (1080)
+...+..+. +| ++|+||||+|+++|.++++||+++|+. +++||++|+|||+|||+||+++|++||||+||+|++|||
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g 243 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFS 243 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccC
Confidence 344444444 89 899999999999999999999999985 589999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---CCccCCCCcCCcceeccCCCCchhhcHHHHHH
Q psy3968 531 GMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAP---FECTTTMKSGNADVYLNEIPGGQYTNLQFQAY 607 (1080)
Q Consensus 531 ~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~ 607 (1080)
+++|||++|+++++|+.+|++|++|+++|.++++||+++|++|.| |++ ...++|+.+|.|||||||+|||++||+
T Consensus 244 ~gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~~~~~~~~--~~~~~d~~v~~hqiPGGm~snl~~Ql~ 321 (468)
T PRK12581 244 EGTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYLADGILDP--SLLFPDPRTLQYQVPGGMLSNMLSQLK 321 (468)
T ss_pred CCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcccccCCC--ccCCCCcceeeCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 665 467899999999999999999999999
Q ss_pred HCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCCC
Q psy3968 608 SLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGF 687 (1080)
Q Consensus 608 ~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~~ 687 (1080)
++|+.|||+||++|+++||++|||||||||+|||||+||+|||+ +|+|| ++||+||++|++|+||+||+||
T Consensus 322 ~~g~~dr~~ev~~e~~~V~~~lG~p~~VTP~Sqivg~qA~~nV~---~g~ry------~~~~~ev~~~~~G~yG~~p~~~ 392 (468)
T PRK12581 322 QANAESKLEEVLAEVPRVRKDLGYPPLVTPLSQMVGTQAAMNVI---LGKPY------QMVSKEIKQYLAGDYGKTPAPV 392 (468)
T ss_pred HCCcHhhHHHHHHHHHHHHHHcCCCCEECChhHHHHHHHHHHHH---cCCCc------hhCCHHHHHHhCcCCCCCCCCC
Confidence 99999999999999999999999999999999999999998776 55775 5999999999999999999999
Q ss_pred ChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCCCChHHHHHHhcCChhhHHHHHHHHhcCCCCC
Q psy3968 688 PEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDK 759 (1080)
Q Consensus 688 ~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~ed~l~~~~~p~~~~~f~~~~~~~~~~~~ 759 (1080)
|++++++||++++++++||+++++| +++++|+|+.+.. .+|||||+|+|||+++.+|+++|++||++.+
T Consensus 393 ~~el~~~il~~~~~~~~rp~~~l~p-~~~~~r~~~~~~~--~~~edvl~~~l~p~v~~~f~~~~~~~~~~~~ 461 (468)
T PRK12581 393 NEDLKRSQIGSAPVTTNRPADQLSP-EFEVLKAEVADLA--QTDEDVLTYALFPSVAKPFLTTKYQTDDVIK 461 (468)
T ss_pred CHHHHHHHhCCCCCCCCCcccccCc-cHHHHHHHHhhhc--CCHHHHHHHHcCcHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999999 8999999998754 6999999999999999999999999998754
No 13
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=100.00 E-value=3.3e-72 Score=645.74 Aligned_cols=407 Identities=52% Similarity=0.887 Sum_probs=394.2
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|+++|||+++++| .+..++|+|++.++..|++.++|+|||||||++||..|++.|++.|+.|+||++++++.++||.
T Consensus 39 ~~~~~~adeav~i~~-~~~~~syl~i~~ii~~a~~~gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~ 117 (449)
T COG0439 39 ALHVALADEAVCIGP-APSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKI 117 (449)
T ss_pred chhhhhCceEEEcCC-ccchhhhhhHHHHHHHHHhcCCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHH
Confidence 679999999999984 5778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.+|++++++|||++|++...+.+.+++.++++++||||||||+.|+||+||++|++.+||.+++..+.+++...|+++.+
T Consensus 118 ~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v 197 (449)
T COG0439 118 TARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRV 197 (449)
T ss_pred HHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999997555788899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
++|+||++++|+++|+++|++|+++++++|+|+.++++|++++.+|++.++++.+.++.+.+.++++.+||+|++|+||+
T Consensus 198 ~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl 277 (449)
T COG0439 198 YLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFL 277 (449)
T ss_pred EeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceeeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCc
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGR 321 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~ 321 (1080)
++.+|++||||||||+|++|++++++||+|++.+++++++|++++ +.|+++..+|++++||++++||.++|.|++|.
T Consensus 278 ~~~~~~~yfiEmN~Rlqveh~vte~vtGiDlv~~qi~ia~ge~l~---~~q~~~~~~g~aie~Ri~aedp~~~f~pspG~ 354 (449)
T COG0439 278 YDSNGEFYFIEMNTRLQVEHPVTEMVTGIDLVKEQIRIAAGEPLS---LKQEDIKFRGHAIECRINAEDPLGNFLPSPGK 354 (449)
T ss_pred EeCCCCEEEEEEecccccCccceehhhhhhHHHHHHHHHcCCCCC---CCCCcccccceeeeceeeccCCCCCcCCCCCe
Confidence 997778999999999999999999999999999999999998765 77888999999999999999999999999999
Q ss_pred eEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccC
Q psy3968 322 IEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVN 401 (1080)
Q Consensus 322 i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~ 401 (1080)
++.+..|+++|+|++.+ .+.|..++++|||+++|++++|.++++|+.+|.++|.++.|+|++||++|++++++++.|.+
T Consensus 355 i~~~~~P~g~gvr~d~~-~~~~~~i~~~yds~i~k~i~~~~~r~~ai~~~~~aL~e~~i~G~~t~~~~~~~~~~~~~~~~ 433 (449)
T COG0439 355 ITRYAPPGGPGVRVDSG-VYDGYRVPPYYDSMIGKVIVHGRTRDEAIARMRRALDELVIDGIKTNIPLLQEILRDPDFLA 433 (449)
T ss_pred eeeecCCCCCceEEEee-cccCcccCcchhhheeEEEEecCChHHHHHHHHHHHHheEecCccCChHHHHHHhcChHhhc
Confidence 99999999999999985 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeecCCc
Q psy3968 402 GAVDTYFIDENP 413 (1080)
Q Consensus 402 g~~~T~fie~~~ 413 (1080)
|+++|+|++++.
T Consensus 434 g~~~t~~l~~~~ 445 (449)
T COG0439 434 GDLDTHFLETHL 445 (449)
T ss_pred CCcchhhhhhcc
Confidence 999999999864
No 14
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=4e-74 Score=668.09 Aligned_cols=293 Identities=27% Similarity=0.389 Sum_probs=274.2
Q ss_pred CCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 449 LPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 449 ~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
+++++..++..+. +| ++||||||+|+++|.++++||++||+++| ++||++|||||+|||+||+++|++||||+||+|
T Consensus 153 t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDta 232 (499)
T PRK12330 153 TVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTA 232 (499)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEee
Confidence 3444445555444 88 89999999999999999999999999996 899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHH
Q psy3968 526 VDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQ 605 (1080)
Q Consensus 526 ~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~q 605 (1080)
++|||+++|||+||+++++|+.+|++|++|+++|.++++||+++|++|.+|+.. +.++++.++.|||||||+||+.+|
T Consensus 233 i~Glg~~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~~--~~~~d~~v~~~qiPGGm~snl~~Q 310 (499)
T PRK12330 233 ISSMSLGPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKEFESK--TTGVETEIFKSQIPGGMLSNMESQ 310 (499)
T ss_pred cccccccccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhccccc--ccCCCCccccCCCCCCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999864 578999999999999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCC
Q psy3968 606 AYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQ 685 (1080)
Q Consensus 606 l~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~ 685 (1080)
|+++|+.|||+||++|+++||++|||||||||+||||||||+|||+| | || +++|+||++|++|+||+||+
T Consensus 311 l~~~g~~d~~~ev~~e~~~Vr~~lG~~~~VTP~Sqivg~qA~~nv~~---g-ry------~~~~~e~~~~~~G~yG~~p~ 380 (499)
T PRK12330 311 LKQQGAGDRMDEVLEEVPRVRKDAGYPPLVTPSSQIVGTQAVFNVLM---G-RY------KVLTGEFADLMLGYYGETPG 380 (499)
T ss_pred HHHcChhhHHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHHc---C-cc------ccCCHHHHHHhCcCCCCCCC
Confidence 99999999999999999999999999999999999999999997765 4 54 68999999999999999999
Q ss_pred CCChhHHhhhh--cCCCcccCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHHHHHHhc
Q psy3968 686 GFPEPLRSKVL--KDMPRIEGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYLTFRESF 754 (1080)
Q Consensus 686 ~~~~~~~~~~l--~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~~~~~~~ 754 (1080)
||||+++++|+ +++++++|||+++++| +|+++|+++++.++. .+|||||+|+|||+++.+|+++|+++
T Consensus 381 ~~~~e~~~~~~~~~~~~~~~~rp~~~l~p-~~~~~~~~~~~~~~~~~~~edvl~y~l~p~v~~~f~~~~~~~ 451 (499)
T PRK12330 381 ERNPEVVEQAKKQAKKEPITCRPADLLEP-EWDKLRAEALALEGCDGSDEDVLTYALFPQVAPKFFATRAEG 451 (499)
T ss_pred CCCHHHHHHHHhhCCCCCCcCChhhhcCc-hHHHHHHHHHHhccCCCCHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 99999999996 6899999999999999 599999999998776 89999999999999999999999754
No 15
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.8e-74 Score=669.31 Aligned_cols=290 Identities=29% Similarity=0.427 Sum_probs=271.2
Q ss_pred CCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 449 LPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 449 ~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
+++++...+..+. +| ++||||||+|+++|.++++||++||+++ ++||++|+|||+|||+||+++|+++|||+||+|+
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv 229 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAI 229 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCCCEEEeec
Confidence 3444455555444 79 8999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHH
Q psy3968 527 DSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQA 606 (1080)
Q Consensus 527 ~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql 606 (1080)
+|||+|+|||+||+++++|+.+|++|++|+++|.++++||++++++|.+|++. +.++|+.+|.|||||||+|||++||
T Consensus 230 ~~~g~gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y~~~~~~--~~~~~~~v~~~q~PGG~~snl~~Ql 307 (467)
T PRK14041 230 SPFSMGTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVG--MKSPDSRILVSQIPGGMYSNLVKQL 307 (467)
T ss_pred cccCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCcCeeeCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999764 5889999999999999999999999
Q ss_pred HHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCC
Q psy3968 607 YSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQG 686 (1080)
Q Consensus 607 ~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~ 686 (1080)
+++|+.|||+||++||++||++|||||||||+||||||||+| |+|+|+|| ++||+||++|++|+||+||++
T Consensus 308 ~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~---Nvl~g~r~------~~~~~~~~~~~~G~~G~~p~~ 378 (467)
T PRK14041 308 KEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTSQIVGVQAVL---NVLTGERY------KRVTNETKNYVKGLYGRPPAP 378 (467)
T ss_pred HHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChhHHHHHHHHH---hhcChhhe------eeCCHHHHHHhCcCCCCCCCC
Confidence 999999999999999999999999999999999999999987 66789986 599999999999999999999
Q ss_pred CChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCCCChHHHHHHhcCChhhHHHHHHHHh
Q psy3968 687 FPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRES 753 (1080)
Q Consensus 687 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~ed~l~~~~~p~~~~~f~~~~~~ 753 (1080)
||++++++||++++++++||+++++| +++++|+++.. ...+|||||+|+|||+++.+|+++|++
T Consensus 379 ~~~~~~~~il~~~~~~~~rp~~~~~p-~~~~~~~~~~~--~~~~~e~~l~y~~~p~v~~~f~~~~~~ 442 (467)
T PRK14041 379 IDEELMKKILGDEKPIDCRPADLLEP-ELEKARKELGI--LAETDEDLLIYVILGEVGKKFLKKKYE 442 (467)
T ss_pred CCHHHHHHHhCCCCCCcCChhhccCc-hHHHHHHHhcc--cCCCHHHHHHHHcCcHHHHHHHHhccc
Confidence 99999999999999999999999999 59999998843 247999999999999999999999964
No 16
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=8.1e-74 Score=665.49 Aligned_cols=292 Identities=32% Similarity=0.502 Sum_probs=270.6
Q ss_pred CCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 449 LPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 449 ~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
+++++...+..+. +| ++|+||||+|+++|.++++||+++|+.+ ++||++|+|||+|||+||+++|++||||+||+|+
T Consensus 152 ~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~-~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv 230 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAV-TVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAI 230 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeec
Confidence 4445555555544 89 8999999999999999999999999999 5999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCC-ccCCCCcCCcceeccCCCCchhhcHHHH
Q psy3968 527 DSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFE-CTTTMKSGNADVYLNEIPGGQYTNLQFQ 605 (1080)
Q Consensus 527 ~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~iPGG~~snl~~q 605 (1080)
+|||+|+|||++|+++++|+.+|++|++|+++|.++++||++++++|..+. ......+.|+++|.|||||||+|||++|
T Consensus 231 ~glg~gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r~~y~~~~~~~~~~~~~~~~v~~~~~PGG~~snl~~q 310 (448)
T PRK12331 231 SPFAGGTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDHYREEGILNPKVKDVEPKTLIYQVPGGMLSNLLSQ 310 (448)
T ss_pred cccCCCcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCcccccCCcCeeecCCCcchHhHHHHH
Confidence 999999999999999999999999999999999999999999999997432 1123567899999999999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCC
Q psy3968 606 AYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQ 685 (1080)
Q Consensus 606 l~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~ 685 (1080)
|+++|++|||+||++|+++||++|||||||||+|||||+||+||| |+|+|| +++|+||++|++|+||+||+
T Consensus 311 l~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nv---l~g~r~------~~~~~~~~~~~~G~~G~~p~ 381 (448)
T PRK12331 311 LKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLSQMVGTQALMNV---ISGERY------KMVPNEIKDYVRGLYGRPPA 381 (448)
T ss_pred HHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHH---hcchhh------ccCCHHHHHHhCcCCCCCCC
Confidence 999999999999999999999999999999999999999998866 688886 58999999999999999999
Q ss_pred CCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCCCChHHHHHHhcCChhhHHHHHHHHh
Q psy3968 686 GFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRES 753 (1080)
Q Consensus 686 ~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~ed~l~~~~~p~~~~~f~~~~~~ 753 (1080)
|||++++++||++++++++||+++++| +++++|+++.+.. .+|||||+|+|||+++.+|+++|++
T Consensus 382 ~~~~~~~~~~l~~~~~~~~rp~~~~~p-~~~~~~~~~~~~~--~~~e~~l~y~~~p~v~~~~~~~~~~ 446 (448)
T PRK12331 382 PIAEEIKKKIIGDEEVITCRPADLIEP-QLEKLREEIAEYA--ESEEDVLSYALFPQQAKDFLGRRED 446 (448)
T ss_pred CCCHHHHHHHhCCCCCCcCChhhcCCc-cHHHHHHHHHHhc--CCHHHHHHHHcCcHHHHHHHHHhhc
Confidence 999999999999999999999999999 8999999998864 5899999999999999999999963
No 17
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=3e-71 Score=659.89 Aligned_cols=411 Identities=49% Similarity=0.850 Sum_probs=390.8
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|+++||++|+++++ ++..+|+|++.|+++|+++++|+|||||||++|+..+++.|++.|++|+||++++++.++||
T Consensus 38 ~a~~~~~AD~~~~i~~~-~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK 116 (499)
T PRK08654 38 NALFVKYADEAYPIGPA-PPSKSYLNIERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSK 116 (499)
T ss_pred cccchhhCCEEEEcCCC-CcccCccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCH
Confidence 46899999999999764 55679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+||++...+.+.+++.++++++|||+||||+.|+||+|+++|++.+||.++++.+.+++...|+++.
T Consensus 117 ~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~ 196 (499)
T PRK08654 117 INAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDST 196 (499)
T ss_pred HHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCe
Confidence 99999999999999998643478999999999999999999999999999999999999999999999888888899889
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|+++++++|++|+++++++|+|+.++++++.++.+|++.++++++++|.+.+.++++++||.|++++||
T Consensus 197 v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie~~Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEf 276 (499)
T PRK08654 197 VFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIEEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEF 276 (499)
T ss_pred EEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++ +|++||+|||||++++|++++.++|+|++++++++++|.+++ +.+..+..+|++++||+++|||.++|.|++|
T Consensus 277 l~~-~g~~yflEiNpRlqveh~vte~~tGvDlv~~~i~~A~G~~l~---~~~~~~~~~g~ai~~ri~ae~p~~~f~P~~G 352 (499)
T PRK08654 277 LYS-NGNFYFLEMNTRLQVEHPITEMVTGIDIVKEQIKIAAGEELS---FKQEDITIRGHAIECRINAEDPLNDFAPSPG 352 (499)
T ss_pred EEE-CCcEEEEEEECCCCCCCceeehhhCCCHHHHHHHHhcCCCCC---CcccccccceEEEEEEEEeecCccCcCCCCC
Confidence 997 577999999999999999999999999999999999999886 5566777889999999999999999999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
+|..+++|+++|+|+|++ ++.|+.++++|||++|+||++|+|+++|++++.++|+++.|+|++||++||+++|.|++|+
T Consensus 353 ~i~~~~~p~~~~vr~d~~-~~~g~~v~~~~ds~~ak~i~~g~~r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f~ 431 (499)
T PRK08654 353 KIKRYRSPGGPGVRVDSG-VHMGYEIPPYYDSMISKLIVWGRTREEAIARMRRALYEYVIVGVKTNIPFHKAVMENENFV 431 (499)
T ss_pred eEEEEEcCCCCCEEEECc-ccCCCCcCCccCchhheeeEeCCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhc
Confidence 999999999999999997 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCCccccc
Q psy3968 401 NGAVDTYFIDENPQLFT 417 (1080)
Q Consensus 401 ~g~~~T~fie~~~elf~ 417 (1080)
+|++||+||+++|++++
T Consensus 432 ~~~~~t~~~~~~~~~~~ 448 (499)
T PRK08654 432 RGNLHTHFIEEETTILE 448 (499)
T ss_pred CCCccchhhhcCHHHHH
Confidence 99999999999876654
No 18
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=100.00 E-value=1.9e-67 Score=627.43 Aligned_cols=420 Identities=47% Similarity=0.839 Sum_probs=394.0
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|+++||++|++++. +..+|+|.+.|+++|+++++|+|+|||||++|+..+++.+++.|++++||++++++.++||
T Consensus 38 ~a~~~~~aD~~~~i~~~--~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK 115 (472)
T PRK07178 38 HALHVKRADEAYSIGAD--PLAGYLNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDK 115 (472)
T ss_pred CCccHhhCCEEEEcCCC--chhhhcCHHHHHHHHHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCH
Confidence 36899999999999754 3489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+||++...+.+.+++.++++++|||+||||+.|+||+|+++|++.+||.++++.+.+++...+++.+
T Consensus 116 ~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~ 195 (472)
T PRK07178 116 TEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAE 195 (472)
T ss_pred HHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999998544578999999999999999999999999999999999999999999998888777788889
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||++++|++++++++++|+++++++++|+.++++++..+.+|++.++++.++++.+.+.++++++||.|++++||
T Consensus 196 v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e~~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf 275 (472)
T PRK07178 196 VFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEF 275 (472)
T ss_pred EEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 99999999989999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||+|||||++++|++++.++|+|++++++++++|++++ +.+..+..+|+++++|+++++|.++|.|+.|
T Consensus 276 ~~d~~g~~y~iEiNpRl~~~~~~te~~tGvdl~~~~ir~a~G~~l~---~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~g 352 (472)
T PRK07178 276 LLDADGEVYFMEMNTRVQVEHTITEEITGIDIVREQIRIASGLPLS---YKQEDIQHRGFALQFRINAEDPKNDFLPSFG 352 (472)
T ss_pred EEeCCCCEEEEEEeCCcCCCccceeeeeCcCHHHHHHHHHCCCCCC---CccccCCcceEEEEEEEeeecCCcCEecCce
Confidence 9988888999999999999999999999999999999999999886 4456677789999999999999999999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
++..+..|+++|+|+|++ .++|+.++++|||++|+||++|+|+++|++++.++|++++|+|++|||+||+++|.|++|+
T Consensus 353 ~i~~~~~~~~~~vr~d~~-~~~g~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~~ 431 (472)
T PRK07178 353 KITRYYAPGGPGVRTDTA-IYTGYTIPPYYDSMCAKLIVWALTWEEALDRGRRALDDMRVQGVKTTIPYYQEILRNPEFR 431 (472)
T ss_pred EEEEEEcCCCCCeEEEec-ccCCCEeCcccCCccceEEEEcCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcCHhhc
Confidence 999999999999999995 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCCccccccCCcchHHH
Q psy3968 401 NGAVDTYFIDENPQLFTLQPTKNRAQ 426 (1080)
Q Consensus 401 ~g~~~T~fie~~~elf~~~~~~dra~ 426 (1080)
+|+++|+||+++++++......++..
T Consensus 432 ~~~~~t~~~~~~~~~~~~~~~~~~~~ 457 (472)
T PRK07178 432 SGQFNTSFVESHPELTNYSIKRKPEE 457 (472)
T ss_pred CCCccchhHhcChhhhcCccccCHHH
Confidence 99999999999998877655444433
No 19
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=100.00 E-value=9e-66 Score=613.48 Aligned_cols=411 Identities=49% Similarity=0.837 Sum_probs=384.6
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
.++|+++||++|++++. +..+|+|.+.|+++|+++++|+|||++|+++|+..+++.|++.|++++||++++++.++||
T Consensus 38 ~~~~~~~AD~~~~i~~~--~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK 115 (478)
T PRK08463 38 ECLHVKIADEAYRIGTD--PIKGYLDVKRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNK 115 (478)
T ss_pred CCcchhhcCEEEEcCCC--chhcccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcH
Confidence 36899999999999753 3489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGP-ITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNG 159 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~-v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~ 159 (1080)
..+|++++++|||+||++... ..+.+++.++++++|||+|+||+.|+||+|+++|++.+||.++++.+..++...++++
T Consensus 116 ~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~ 195 (478)
T PRK08463 116 NIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNND 195 (478)
T ss_pred HHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999865322 3578999999999999999999999999999999999999999998877777778888
Q ss_pred cEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Q psy3968 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239 (1080)
Q Consensus 160 ~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 239 (1080)
.+++|+||+|++|+++++++++.|+++++++|+|+.++++++.++.+|++.+++++++++.+.+.++++++||.|++|+|
T Consensus 196 ~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~ie~~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~~vE 275 (478)
T PRK08463 196 EVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVIEIAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIE 275 (478)
T ss_pred cEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEE
Confidence 99999999988999999999988999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCC
Q psy3968 240 FLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDT 319 (1080)
Q Consensus 240 fivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~ 319 (1080)
|+++++|++||+|||||++++|++++.++|+|++++++++++|++++ +.+..+..+|+++++|+++++|.+.|.|++
T Consensus 276 f~~~~~~~~y~iEiN~R~~~~~~~te~~tGidlv~~~ir~a~G~~l~---~~~~~~~~~g~ai~~ri~ae~~~~~f~p~~ 352 (478)
T PRK08463 276 FLLDDYNRFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAGEILD---LEQSDIKPRGFAIEARITAENVWKNFIPSP 352 (478)
T ss_pred EEEcCCCCEEEEEEECCcCCCcceeeHhhCCCHHHHHHHHHcCCCCC---CccccCCCceEEEEEEEeccCcccCeecCC
Confidence 99998888999999999999999999999999999999999999875 445556678999999999999999999999
Q ss_pred CceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccc
Q psy3968 320 GRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKF 399 (1080)
Q Consensus 320 G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F 399 (1080)
|++..+..|.++++|++.+ ...|+.++++|||++|++|++|+|+++|++++.++|+++.|+|++||++||+++|.|++|
T Consensus 353 G~~~~~~~~~~~~vr~d~~-~~~g~~v~~~~d~~la~~i~~g~~r~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~f 431 (478)
T PRK08463 353 GKITEYYPALGPSVRVDSH-IYKDYTIPPYYDSMLAKLIVKATSYDLAVNKLERALKEFVIDGIRTTIPFLIAITKTREF 431 (478)
T ss_pred cEEEEEEcCCCCCeeEecc-ccCCCEeCcccccceeEEEEECCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHH
Confidence 9999999998899999985 688999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeecCC-ccccc
Q psy3968 400 VNGAVDTYFIDEN-PQLFT 417 (1080)
Q Consensus 400 ~~g~~~T~fie~~-~elf~ 417 (1080)
++|+++|+||+++ ++++.
T Consensus 432 ~~~~~~t~~~~~~~~~~~~ 450 (478)
T PRK08463 432 RRGYFDTSYIETHMQELLE 450 (478)
T ss_pred hCCCccchhhhhCchhhcc
Confidence 9999999999988 56654
No 20
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=100.00 E-value=1.4e-65 Score=610.53 Aligned_cols=406 Identities=45% Similarity=0.805 Sum_probs=382.1
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|.++||++++++|+ ....+|+|++.|+++|+++++|+|||++||++|+..+++.|++.|++++||+++++++++||
T Consensus 41 ~~~~~~~aD~~~~i~p~-~~~~~y~d~~~i~~~a~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK 119 (467)
T PRK12833 41 DSLAARMADEAVHIGPS-HAAKSYLNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDK 119 (467)
T ss_pred CChhHHhCCEEEecCCC-CccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCH
Confidence 36899999999999764 45679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+||++...+.+.+++.++++++|||+|+||..|+||+|+++|++.+||.++++.+.+++...|+++.
T Consensus 120 ~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~ 199 (467)
T PRK12833 120 ARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGG 199 (467)
T ss_pred HHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999998534688999999999999999999999999999999999999999999998887777788889
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
++||+||++++|+++++++|++ +++++++++|+.++++++..+.+|++.++++.++++.+.+.++++++||+|++++||
T Consensus 200 vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~e~~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf 278 (467)
T PRK12833 200 VYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEY 278 (467)
T ss_pred EEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCcceEEE
Confidence 9999999977999999999866 678889999999999999999999888999999999999999999999999999999
Q ss_pred EEcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCC
Q psy3968 241 LCDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDT 319 (1080)
Q Consensus 241 ivd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~ 319 (1080)
++++ +|++||||||||++++|++++.++|+|++++++++++|++++ +.+..+..+|+++++|+++++|.++|.|++
T Consensus 279 ~~~~~~g~~~~iEvNpR~~~~~~~te~~tGvdl~~~~i~~a~G~~l~---~~~~~~~~~g~ai~~ri~ae~~~~~~~p~~ 355 (467)
T PRK12833 279 LFDDARGEFYFIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLR---FAQGDIALRGAALECRINAEDPLRDFFPNP 355 (467)
T ss_pred EEecCCCCEEEEEEECCCCcchhhhHHHhCCCHHHHHHHHHCCCCCC---CCccccCcceEEEEEEEecccCCCCcccCC
Confidence 9985 678999999999999999999999999999999999999876 455667788999999999999999999999
Q ss_pred CceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccc
Q psy3968 320 GRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKF 399 (1080)
Q Consensus 320 G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F 399 (1080)
|.+..+.+|.++|+|++.+ .+.|+.++++|||++|+||++|+|+++|++++.++|++++|+|++||++||+++|.|++|
T Consensus 356 g~i~~~~~~~~~gvr~d~~-~~~G~~v~~~~ds~l~~vi~~g~~~~~a~~~~~~al~~~~i~g~~t~~~~~~~~~~~~~~ 434 (467)
T PRK12833 356 GRIDALVWPQGPGVRVDSL-LYPGYRVPPFYDSLLAKLIVHGEDRAAALARAARALRELRIDGMKTTAPLHRALLADADV 434 (467)
T ss_pred CEEEEEEcCCCCCeEEecc-eeCcCEeCCCcCcchheEEEEcCCHHHHHHHHHHHHHhcEeECccCCHHHHHHHhcChhh
Confidence 9999999999999999985 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeecCC
Q psy3968 400 VNGAVDTYFIDEN 412 (1080)
Q Consensus 400 ~~g~~~T~fie~~ 412 (1080)
++|+++|+||+++
T Consensus 435 ~~~~~~t~~~~~~ 447 (467)
T PRK12833 435 RAGRFHTNFLEAW 447 (467)
T ss_pred cCCCcccHHHHhh
Confidence 9999999999985
No 21
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=100.00 E-value=4.6e-63 Score=635.27 Aligned_cols=403 Identities=43% Similarity=0.728 Sum_probs=374.0
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|+++||++|+++++ +..++|+|.+.|+++|+++++|+|||++++++|+..++..|++.|++++||+++++++++||.
T Consensus 38 a~~v~~AD~~v~l~~~-~~~~sy~d~e~Il~~a~~~~idaIiPG~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~ 116 (1201)
T TIGR02712 38 SQHVLDADEAVCLGGA-PAAESYLDIDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKH 116 (1201)
T ss_pred ccchhhCCEEEEcCCC-CcccCCCCHHHHHHHHHHHCCCEEEeCCcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHH
Confidence 6889999999999763 556799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.+|++|+++|||+++++ ..+++.+++.+++++++||+||||..|+||+|+++|++.+|+.++++.+.+.+...|++..+
T Consensus 117 ~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~v 195 (1201)
T TIGR02712 117 TARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGV 195 (1201)
T ss_pred HHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99999999999998864 46789999999999999999999999999999999999999999999988777777888889
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
+||+||+|.+|+++++++|++|+++.+++++|+.++++++..+.+|++.++++.++++.+.+.+++++++|+|++++||+
T Consensus 196 lVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee~Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfi 275 (1201)
T TIGR02712 196 FLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFI 275 (1201)
T ss_pred EEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEE
Confidence 99999997799999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred EcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCcccc--ccCeEEEEeeeccCCCCCCCCCC
Q psy3968 242 CDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKI--SPQGFAIQCRVTTEDPAKNFQPD 318 (1080)
Q Consensus 242 vd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i--~~~g~ai~~ri~ae~p~~~f~p~ 318 (1080)
++. +|++||||||||+++++++++.++|+|++++++++++|.+++. .+... ...|+++++|+|+++|.++|.|+
T Consensus 276 ld~~~g~~y~lEVNpRlq~~~~lte~~tGvDlve~~ir~a~G~~~~~---~~~~~~~~~~g~ai~~riyae~p~~~~~p~ 352 (1201)
T TIGR02712 276 YDEARDEFYFLEVNTRLQVEHPVTEMVTGLDLVEWMIRIAAGELPDF---ASLNISLTPRGAAIEARVYAENPAKNFQPS 352 (1201)
T ss_pred EECCCCCEEEEEEECCcCcchhhHHHHhCCCHHHHHHHHHcCCCCCc---cccccccccceEEEEEEEeccCcccCcCCC
Confidence 986 4779999999999999999999999999999999999997652 22212 45799999999999999999999
Q ss_pred CCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccc
Q psy3968 319 TGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQK 398 (1080)
Q Consensus 319 ~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~ 398 (1080)
.|.++.+..|++ +|++.+ ...|..|++.||+++|+||++|+|+++|++++++++++++|+|+.||++||+.+|.++.
T Consensus 353 ~G~l~~v~~p~~--vrvd~~-v~~G~~V~~~~d~~la~vI~~g~~r~eA~~~~~~al~~i~i~G~~tn~~~l~~~~~~~~ 429 (1201)
T TIGR02712 353 PGLLTDVQFPDD--VRVDTW-VETGTEVSPEYDPMLAKIIVHGSDREDAILKLHQALAETRVYGIETNLDYLRSILSSET 429 (1201)
T ss_pred CceeeEEECCCe--EEEece-ecCCCEECCccCCCeEEEEEEECCHHHHHHHHHHHHhceEEcCcCcCHHHHHHHhcChh
Confidence 999887777754 888874 78999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeeeecCC
Q psy3968 399 FVNGAVDTYFIDEN 412 (1080)
Q Consensus 399 F~~g~~~T~fie~~ 412 (1080)
|++|+++|+||++.
T Consensus 430 ~~~~~~~t~~l~~~ 443 (1201)
T TIGR02712 430 FRSAQVSTRTLNSF 443 (1201)
T ss_pred hcCCCccchhhhhC
Confidence 99999999999864
No 22
>PRK05586 biotin carboxylase; Validated
Probab=100.00 E-value=6.4e-63 Score=586.26 Aligned_cols=407 Identities=50% Similarity=0.843 Sum_probs=382.2
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|.++||++|++++. ...++|+|++.|+++|+++++|+|+|++++++|+..++..++..|++++||+++++..++||
T Consensus 38 ~a~~~~~aD~~~~~~~~-~~~~~y~~~~~i~~~~~~~~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK 116 (447)
T PRK05586 38 DALHVQLADEAVCIGPA-SSKDSYLNIQNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNK 116 (447)
T ss_pred cCcchhhCCEEEEeCCC-ChhhcccCHHHHHHHHHHcCCCEEEcCccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCH
Confidence 46899999999998653 45578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+|+++...+.+.+++.+++++++||+||||..|+||+|+++|++.+||.++++.+.+++...++++.
T Consensus 117 ~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~ 196 (447)
T PRK05586 117 SNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDS 196 (447)
T ss_pred HHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCe
Confidence 99999999999999998544678999999999999999999999999999999999999999999998887777788789
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|++++++++..|+++++++++|+.++++++..+.+|++.+++++++++.+.+.+++++|||.|++++||
T Consensus 197 vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf 276 (447)
T PRK05586 197 MYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEF 276 (447)
T ss_pred EEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEE
Confidence 99999999989999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||+|||||+++++++++.++|+|+++.++++++|.+++ +.+..+...|+++++|+++++|...|.|..|
T Consensus 277 ~~~~~g~~~~iEvNpR~~~~~~~t~~~tGid~~~~~i~~a~G~~l~---~~~~~~~~~g~a~~~~i~a~~~~~~~~p~~G 353 (447)
T PRK05586 277 LLDKDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKIAYGEKLS---IKQEDIKINGHSIECRINAEDPKNGFMPCPG 353 (447)
T ss_pred EEcCCCCEEEEEEECCCCCCccceehhhCCCHHHHHHHHHcCCCCC---CcccccCcCceEEEEEeeccCcccCccCCCC
Confidence 9998899999999999999999999999999999999999999875 3445566789999999999999999999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
.+..+..|.+.++|++.+ ...|+.+++.||+++|+||++|+|+++|++++.++|+++.|+|++||++||+++|.|++|.
T Consensus 354 ~~~~~~~~~~~~vr~~~~-~~~g~~v~~~~~~~~~~vi~~g~~~~~a~~~~~~al~~~~~~g~~~~~~~~~~~~~~~~~~ 432 (447)
T PRK05586 354 KIEELYIPGGLGVRVDSA-VYSGYTIPPYYDSMIGKLIVYGKDREEAIQKMKRALGEFIIEGVNTNIDFQFIILEDEEFI 432 (447)
T ss_pred EEEEEEcCCCCCeEeecc-ccCCCccCCccCchhheeEEEcCCHHHHHHHHHHHHhhcEEECccCCHHHHHHHhCCHhhc
Confidence 999999999999999985 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC
Q psy3968 401 NGAVDTYFIDEN 412 (1080)
Q Consensus 401 ~g~~~T~fie~~ 412 (1080)
+|+++|+||+++
T Consensus 433 ~~~~~t~~~~~~ 444 (447)
T PRK05586 433 KGTYDTSFIEKK 444 (447)
T ss_pred CCccccHHhHhh
Confidence 999999999875
No 23
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=100.00 E-value=5e-62 Score=579.25 Aligned_cols=407 Identities=48% Similarity=0.831 Sum_probs=379.4
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|.++||++|++++. ....+|+|++.|+++|+++++|+|+|++|+++|+..+++.+++.|++++||+++++++++||
T Consensus 38 ~a~~~~~aD~~~~~~~~-~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK 116 (449)
T TIGR00514 38 DALHVLLADEAVCIGPA-PSAKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDK 116 (449)
T ss_pred cccccccCCEEEEcCCC-CchhchhCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCH
Confidence 46899999999999653 45578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++|+++|||+|+++...+.+.+++.+++++++||+|+||..|+||+|+++|++.+||.++++.+.+.+...++++.
T Consensus 117 ~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~ 196 (449)
T TIGR00514 117 VSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDG 196 (449)
T ss_pred HHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999997534678999999999999999999999999999999999999999999988776666677788
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
++||+||+|++|++++++.+++|+++.+++++|+.++++++..+..|++.++++..+++.+.+.++++++||+|++|+||
T Consensus 197 vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef 276 (449)
T TIGR00514 197 VYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEF 276 (449)
T ss_pred EEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEEECCCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEE
Confidence 99999999989999999999889999998889998888889999999888999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||+|||||+++++++++.++|+|+++.++++++|.+++ ..+..+..++++++++++++++.+.|.|+.|
T Consensus 277 ~~~~~g~~~viEiNpR~~~~~~~~~~~tGvdl~~~~i~~a~G~~l~---~~~~~~~~~~~a~~~~i~~~~~~~~~~p~~g 353 (449)
T TIGR00514 277 LLDKNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQIRIAAGEPLS---LKQEDVVVRGHAIECRINAEDPIKTFLPSPG 353 (449)
T ss_pred EEeCCCCEEEEEEECCCCCCcceeehhcCCcHHHHHHHHHCCCCCC---CccccCCCceEEEEEEeeccCCCCCeeeCCC
Confidence 9998888999999999999999999999999999999999999876 3344555679999999999999999999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
.+..+..|.++|+|++.+ ...|+.+++.||+++|+||++|+|+++|++++.+++++++|+|++|||+||+++|.|++|.
T Consensus 354 ~~~~~~~~~~~gv~~~~~-~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~tn~~~l~~~~~~~~f~ 432 (449)
T TIGR00514 354 RITRYLPPGGPGVRWDSH-VYSGYTVPPYYDSMIGKLITYGKTREVAIARMKRALSEFIIDGIKTTIPFHQRILEDENFQ 432 (449)
T ss_pred EEEEEEcCCCCCEeeccC-ccCCCEeCccccccceEEEEEcCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhcChhhc
Confidence 999999999999999985 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC
Q psy3968 401 NGAVDTYFIDEN 412 (1080)
Q Consensus 401 ~g~~~T~fie~~ 412 (1080)
+|++||+||+++
T Consensus 433 ~~~~~t~~~~~~ 444 (449)
T TIGR00514 433 HGGTNIHYLEKK 444 (449)
T ss_pred CCceeehhHhhh
Confidence 999999999875
No 24
>PRK08462 biotin carboxylase; Validated
Probab=100.00 E-value=4.2e-60 Score=562.65 Aligned_cols=405 Identities=48% Similarity=0.826 Sum_probs=374.3
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|.++||++|+++++ ...++|+|++.|+++|+++++|+|+|++|+++|+..+++.|+..|++++||+++++.+++||
T Consensus 40 ~~~~~~~ad~~~~~~~~-~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK 118 (445)
T PRK08462 40 DALYLKYADAKICIGGA-KSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDK 118 (445)
T ss_pred CCchhhhCCEEEEeCCC-chhcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCH
Confidence 47999999999999765 34579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++|+++|||+|+++...+.+.+++.+++++++||+|+||.+|+||+|+++|++.+||.+++..+..++...++++.
T Consensus 119 ~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~ 198 (445)
T PRK08462 119 SKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGT 198 (445)
T ss_pred HHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999997544678999999999999999999999999999999999999999999887776666677778
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|++++++++.+|+++++++++|+.++.+++..+.+|+..++++.++++.+.+.++++++||.|++++||
T Consensus 199 vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~ 278 (445)
T PRK08462 199 MYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIEESPAVVLDEKTRERLHETAIKAAKAIGYEGAGTFEF 278 (445)
T ss_pred EEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEE
Confidence 99999999889999999999889999999999999888888888899877999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||+|||||+++++.+++.++|+|++++++++++|.++++. .....+++++++++++++|. .|.|.+|
T Consensus 279 ~~~~~g~~~viEiNpR~~~~~~~~~~~~Gidl~~~~i~~a~G~~l~~~----~~~~~~~~a~~~~~~~~~~~-~~~p~~G 353 (445)
T PRK08462 279 LLDSNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEELPSQ----ESIKLKGHAIECRITAEDPK-KFYPSPG 353 (445)
T ss_pred EEeCCCCEEEEEEECCcCcCcceehhhhCCCHHHHHHHHHCCCCcccc----cccCCceeEEEEEeccCCCC-ceecccC
Confidence 999877899999999999998888899999999999999999987632 23446799999999999985 5889999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
.+..+..|.+.++|++.. ...|..+++.|++++|+||++|+|+++|++++.++++.++|+|++|||+||+++|.||+|+
T Consensus 354 ~l~~~~~~~~~~~r~~~~-~~~g~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~ 432 (445)
T PRK08462 354 KITKWIAPGGRNVRMDSH-AYAGYVVPPYYDSMIGKLIVWGEDRNRAIAKMKRALKEFKVEGIKTTIPFHLEMMENADFI 432 (445)
T ss_pred EEeEEEcCCCCCEEEccC-cCCCCEeChhhccCccEEEEEcCCHHHHHHHHHHHHHhcEEECccCCHHHHHHHhcChhhc
Confidence 999888888888999984 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC
Q psy3968 401 NGAVDTYFIDEN 412 (1080)
Q Consensus 401 ~g~~~T~fie~~ 412 (1080)
+|+++|+||++|
T Consensus 433 ~~~~~~~~~~~~ 444 (445)
T PRK08462 433 NNKYDTKYLEEH 444 (445)
T ss_pred CCceechhhhhc
Confidence 999999999865
No 25
>KOG0368|consensus
Probab=100.00 E-value=1.5e-60 Score=569.08 Aligned_cols=405 Identities=36% Similarity=0.608 Sum_probs=368.1
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
||-|.++||+.+.+|.| .+.+.|.|+|.|+++|++..+||||+|||..|||+.+.+.|...||.|+||+..++..++||
T Consensus 101 naeyIrmADqyvevPgG-tNnNNyANVdlIvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDK 179 (2196)
T KOG0368|consen 101 NAEYIRMADQYVEVPGG-TNNNNYANVDLIVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDK 179 (2196)
T ss_pred hHHHhhhhhheeeCCCC-CCCCCcccHHHHHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcch
Confidence 46789999998888654 77789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCC------------------------CCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEEC
Q psy3968 81 VAARQAAIDSGVPIVPGT------------------------PGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVR 136 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~------------------------~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~ 136 (1080)
....-.++.+|+|+.||+ ...+.+.+|..+.++.+|||+|||++.|+||+|+|.|+
T Consensus 180 I~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~ 259 (2196)
T KOG0368|consen 180 IASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVE 259 (2196)
T ss_pred HHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeecc
Confidence 999999999999999874 12356788999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHH
Q psy3968 137 KMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVR 216 (1080)
Q Consensus 137 s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~ 216 (1080)
+.+|+...|+++..+ +..+++++.+...+.||++||+++|..|+++.++.|||++||+||++++++|+...+.+..
T Consensus 260 n~ddF~~lf~qv~~E----vPGSPIFlMK~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEEAPatIap~etf 335 (2196)
T KOG0368|consen 260 NEDDFKALFKQVQNE----VPGSPIFLMKLADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEEAPATIAPPETF 335 (2196)
T ss_pred chHHHHHHHHHHHhh----CCCCceeeeecccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhhCCcccCCHHHH
Confidence 999999999998876 4578999999999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHcCCcceEEEEEEEcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCC------
Q psy3968 217 NKMTDLAVKLAKHVGYSNAGTVEFLCDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELG------ 289 (1080)
Q Consensus 217 ~~l~~~a~~i~~alg~~G~~~vEfivd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~------ 289 (1080)
++|.+.|.|+++..||.++++||+++.+ +|++||+|.|||+|++|+.||+++|+|++.+|+++|+|.|+..++
T Consensus 336 ~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~TEmis~VNlPAaQlQIAMGiPL~~I~dIR~lY 415 (2196)
T KOG0368|consen 336 KKMEQAAVRLAKLVGYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPTTEMISDVNLPAAQLQIAMGIPLHRIPDIRRLY 415 (2196)
T ss_pred HHHHHHHHHHHHhhcceecceEEEEEecCCCcEEEEecCccccccCCchhhhhcCCccHHHHHHHhCCchhhchHHHHHc
Confidence 9999999999999999999999999988 899999999999999999999999999999999999999985542
Q ss_pred -C-----------CccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEE
Q psy3968 290 -L-----------TQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKV 357 (1080)
Q Consensus 290 -~-----------~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~V 357 (1080)
+ .+..+.++||++.||++.|||..+|.|++|++..+...+...+.-.. .+-.|.-+-.+-||.+||+
T Consensus 416 g~~~~GdS~idfe~~~~p~pkgHciA~RITsEdPddgFkPSsG~v~eLnFrSssnvWgYF-SV~~~g~iHeFadSQFGHi 494 (2196)
T KOG0368|consen 416 GLEPTGDSPIDFENAKLPCPKGHCIAARITSEDPDDGFKPSSGTVQELNFRSSSNVWGYF-SVGNGGGIHEFADSQFGHI 494 (2196)
T ss_pred CCCCCCCCCCChhhccCCCCCceEEEEEeeccCCCCCcCCCCCeeEEeccCCCCCeeEEE-EecCCCceeecccccccee
Confidence 1 12245678999999999999999999999999876654433221111 2335566778889999999
Q ss_pred EEecCChHHHHHHHHHHhhccEEccc-ccCHHHHHHhcccccccCCceeeeeecC
Q psy3968 358 IAHAADLQSSCAKMNRALREFRVRGV-KTNIPFLLNVLTNQKFVNGAVDTYFIDE 411 (1080)
Q Consensus 358 ia~G~t~~eA~~~a~ral~~i~I~Gv-~tni~~l~~il~~~~F~~g~~~T~fie~ 411 (1080)
+++|++|++|++.|.-+|+++.|||- +|+++||.++|..++|++.+++|+|+|.
T Consensus 495 Fa~Ge~R~eAi~nMv~aLKelsIRgdFrT~VeYLI~LLet~dF~~N~i~TgWLD~ 549 (2196)
T KOG0368|consen 495 FAFGESRQEAIANMVVALKELSIRGDFRTTVEYLIDLLETEDFESNKIDTGWLDK 549 (2196)
T ss_pred eeecCcHHHHHHHHHHHHHheeeccccCchHHHHHHHHHhhhhhhccCcchhHHH
Confidence 99999999999999999999999994 9999999999999999999999999985
No 26
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.5e-59 Score=559.17 Aligned_cols=406 Identities=50% Similarity=0.876 Sum_probs=377.8
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|.++||+++++++. ...++|+|.+.|+++|+++++|+|+|++++++|+..++..+++.|++++||+++++..++||.
T Consensus 39 a~~~~~ad~~~~~~~~-~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~ 117 (451)
T PRK08591 39 ALHVQLADEAVCIGPA-PSKKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKV 117 (451)
T ss_pred CCCHhHCCEEEEeCCC-CcccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHH
Confidence 5788999999998653 455799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.+|++++++|||+|+++...+++.+++.+++++++||+|+||+.|+||+|+++|++.+||.++++.+.+++...++++.+
T Consensus 118 ~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~v 197 (451)
T PRK08591 118 TAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGV 197 (451)
T ss_pred HHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 99999999999999975346789999999999999999999999999999999999999999999988776666777889
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
++|+||+|++|+++++++|++|++++++.++|+.++.+++..+..|++.++++.++++.+.+.++++++||.|++++||+
T Consensus 198 lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~ 277 (451)
T PRK08591 198 YMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFL 277 (451)
T ss_pred EEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 99999998889999999999999999999999988888889999998789999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCc
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGR 321 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~ 321 (1080)
++++|++||+|||||+++++++++.++|+|+++.++++++|.+++. .+.....+++++++|+++++|...|.|..|.
T Consensus 278 ~~~~g~~~viEINpR~~~~~~~~~~~~Gvdl~~~~i~~a~G~~l~~---~~~~~~~~~~a~~~~i~a~~~~~~~~p~~g~ 354 (451)
T PRK08591 278 YEKNGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQIRIAAGEPLSI---KQEDIVFRGHAIECRINAEDPAKNFMPSPGK 354 (451)
T ss_pred EcCCCCEEEEEEECCCCccchhhhhhhCCCHHHHHHHHHCCCCCCC---cccccCcCceEEEEEEeeecCccCcccCCCE
Confidence 9988889999999999999999999999999999999999998762 3334556799999999999999999999999
Q ss_pred eEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccC
Q psy3968 322 IEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVN 401 (1080)
Q Consensus 322 i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~ 401 (1080)
+..+..|.++++|++.. ...|+.+++.||+++|+|+++|+|+++|.+++.+++++++|+|++||++||+++|.+++|++
T Consensus 355 ~~~~~~~~~~~v~~~~~-~~~g~~v~~~~~~~lg~vi~~g~~~~~~~~~~~~~l~~~~i~g~~tn~~~~~~~~~~~~f~~ 433 (451)
T PRK08591 355 ITRYHPPGGPGVRVDSA-VYTGYTIPPYYDSMIGKLIVHGETREEAIARMKRALSEFVIDGIKTTIPLHLRLLNDPNFQA 433 (451)
T ss_pred eeEEEcCCCCCeeeccc-ccCCCCcCccccCcceEEEEEcCCHHHHHHHHHHHHhhCEEECCCCCHHHHHHHhcCHhhhC
Confidence 99999998899999985 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeecCC
Q psy3968 402 GAVDTYFIDEN 412 (1080)
Q Consensus 402 g~~~T~fie~~ 412 (1080)
|++||+||+++
T Consensus 434 ~~~~t~~~~~~ 444 (451)
T PRK08591 434 GDYNIHYLEKK 444 (451)
T ss_pred CCcccHHHHhh
Confidence 99999999886
No 27
>PF02436 PYC_OADA: Conserved carboxylase domain; InterPro: IPR003379 This domain represents a conserved region in pyruvate carboxylase (PYC) (6.4.1.1 from EC), oxaloacetate decarboxylase alpha chain (OADA) (4.1.1.3 from EC), and transcarboxylase 5s subunit (2.1.3.1 from EC). The domain is found adjacent to the HMGL-like domain (IPR000891 from INTERPRO) and often close to the biotin_lipoyl domain (IPR000089 from INTERPRO) of biotin requiring enzymes.; PDB: 2NX9_B 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1S3H_A 1RQE_A 1U5J_A 1RQB_A 2QF7_B ....
Probab=100.00 E-value=4.1e-56 Score=460.70 Aligned_cols=195 Identities=49% Similarity=0.767 Sum_probs=167.0
Q ss_pred eeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccC
Q psy3968 589 VYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSF 668 (1080)
Q Consensus 589 v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~ 668 (1080)
||.|||||||+|||.+||+++|+.|||+||++||++||++|||||+|||||||||+||+|||+|.+.|+| |+++
T Consensus 1 V~~hqiPGG~~sNl~~Q~~~~g~~dr~~ev~~e~~~v~~~lG~~~~VTPsSqiVg~qA~~nV~~~~~g~r------~~~~ 74 (196)
T PF02436_consen 1 VYRHQIPGGMYSNLRQQLKELGLGDRFPEVLKEYPRVRKDLGYPPKVTPSSQIVGDQAVFNVLNGLLGER------YKDF 74 (196)
T ss_dssp HHHH---HHHHHHHHHHHHCTTTTTCHHHHHHHHHHHHHHTTS--SSTTHHHHHHHHHHHHHHTT-HHTT------TSS-
T ss_pred CceecCCchhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHhhhcCcc------ccch
Confidence 5789999999999999999999999999999999999999999999999999999999999998875544 6899
Q ss_pred cHHHHHhhccccCCCCCCCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHH
Q psy3968 669 PKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDY 747 (1080)
Q Consensus 669 ~~~~~~~~~G~~G~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f 747 (1080)
|+||++|++|+||+||++||++++++||++++++++||++.++|.||+++++++++++++ .||||+|||||||+++.+|
T Consensus 75 p~~v~~~~~G~~G~pp~~~~~~l~~~vl~~~~~i~~RP~~~l~p~d~~~~r~~l~~~~g~~~~dedvlsyal~P~v~~~f 154 (196)
T PF02436_consen 75 PDSVVDYLLGKYGKPPGGFPEELRKKVLKGEEPITGRPGDLLPPADLDKLRKELEEKAGREPTDEDVLSYALFPKVAEDF 154 (196)
T ss_dssp BHHHHHHHTTTT---TTSS-HHHHHHHHTTS---SSSGGGCS----HHHHHHHHHHHCTSTSCHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHhCcccCCCCCCCCHHHHHHHhcCCCCCCCCccccCChhhHHHHHHHHHHHcCCCCCHHHHHHHhcCchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887 8999999999999999999
Q ss_pred HHHHHhcCCCCCCCccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhh
Q psy3968 748 LTFRESFGPVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKA 800 (1080)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1080)
+++|+++|+++.+||+.|++|+++++|++|++++|| +++|++
T Consensus 155 ~~~~~~~g~~~~l~t~~~~~g~~~~ee~~v~l~~Gk-----------tl~vkl 196 (196)
T PF02436_consen 155 LKFRAKYGDVSVLPTPVFFYGLKPGEEISVELEPGK-----------TLIVKL 196 (196)
T ss_dssp HHHHHHHS-GGCS-HHHHHHHH-TTEEEEEESCTTE-----------EEEEEE
T ss_pred HHHHHhcCCCCcCCchhhhcCCCCCeEEEEEECCCc-----------EEEEeC
Confidence 999999999999999999999999999999999999 888764
No 28
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=100.00 E-value=1.7e-51 Score=490.24 Aligned_cols=405 Identities=47% Similarity=0.825 Sum_probs=360.3
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++.++||+++.++++ ...++|.|.+.++++|+++++|+|+|++++++|+..++..++..|++++|++++++++++||.
T Consensus 39 a~~~~~ad~~~~~~~~-~~~~~~~d~~~l~~~~~~~~id~I~p~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~ 117 (450)
T PRK06111 39 ALHVKMADEAYLIGGP-RVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKI 117 (450)
T ss_pred CcchhhCCEEEEcCCC-CccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHH
Confidence 4677889999998543 345789999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.++++|+++|||+|++....+.+.+++.++++.++||+|+||+.|+||+|+++|++.+|+.++++.+...+...++++++
T Consensus 118 ~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~ 197 (450)
T PRK06111 118 EARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEM 197 (450)
T ss_pred HHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999973345689999999999999999999999999999999999999999999876554445667789
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
++|+||+|++|++++++.+++|+++.++.+++...+++++..+.+|++.+++++.+++.+.+.++++++|++|++++||+
T Consensus 198 lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~ 277 (450)
T PRK06111 198 YIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFL 277 (450)
T ss_pred EEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEE
Confidence 99999999889999999998899888888888877777777888888778999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCc
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGR 321 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~ 321 (1080)
++++|++||+|||||+++++++++.++|+|+++.++++++|.+++ +.+......++++..++|++++. .+.|..|.
T Consensus 278 ~~~~g~~~viEiN~R~~~~~~~~~~~~Gvd~~~~~i~~~~G~~l~---~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~G~ 353 (450)
T PRK06111 278 VDEQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRIAAGEKLS---FTQDDIKRSGHAIEVRIYAEDPK-TFFPSPGK 353 (450)
T ss_pred EcCCCCEEEEEEECCcCCcchhhHHHhCcCHHHHHHHHhcCCCCC---CccccCCcCceEEEEEEecCCCC-CcccCCCe
Confidence 998888999999999999989999999999999999999999775 23333445678999999998764 45678898
Q ss_pred eEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccC
Q psy3968 322 IEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVN 401 (1080)
Q Consensus 322 i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~ 401 (1080)
+..+..+..++++++.. ...|..+.+.+++++|+|+++|+|+++|++++.++++.++|+|++||+++|+.+|+++.|.+
T Consensus 354 ~~~i~~~~~~~~~~~~~-~~~G~~v~~~~~~~lg~vi~~g~~~~ea~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 432 (450)
T PRK06111 354 ITDLTLPGGEGVRHDHA-VENGVTVTPFYDPMIAKLIAHGETREEAISRLHDALEELKVEGIKTNIPLLLQVLEDPVFKA 432 (450)
T ss_pred eCeEecCCCCCEEEEec-ccCCCEeChhhcccceEEEEEeCCHHHHHHHHHHHHHhCEEeCccCCHHHHHHHhcChhhcC
Confidence 86666666667887763 56799998888999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeecCC
Q psy3968 402 GAVDTYFIDEN 412 (1080)
Q Consensus 402 g~~~T~fie~~ 412 (1080)
|.++|.|++..
T Consensus 433 ~~~~~~~~~~~ 443 (450)
T PRK06111 433 GGYTTGFLTKQ 443 (450)
T ss_pred CcccchHHhhh
Confidence 99999999754
No 29
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=100.00 E-value=1.8e-52 Score=480.85 Aligned_cols=214 Identities=60% Similarity=1.009 Sum_probs=202.4
Q ss_pred cCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchhe
Q psy3968 780 QPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVA 859 (1080)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~ 859 (1080)
.+.+|+||+|+++||..+++|+|+++++++||||||||||||+|||||+.|+..+++.+++.+++.||+||||||||||+
T Consensus 509 ~~~~Gtkq~Ld~~GP~~fa~wvr~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVa 588 (1149)
T COG1038 509 PPPRGTKQILDELGPEGFARWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVA 588 (1149)
T ss_pred CCCccHHHHHHhhChHHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecC
Q psy3968 860 LRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKG 939 (1080)
Q Consensus 860 ~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g 939 (1080)
+|+|.|+||+++-.+......+++||.++..+
T Consensus 589 mRFL~EdPWeRL~~lRk~~PNvlfQMLLRgaN------------------------------------------------ 620 (1149)
T COG1038 589 MRFLKEDPWERLERLRKAVPNVLFQMLLRGAN------------------------------------------------ 620 (1149)
T ss_pred HHHhccCHHHHHHHHHHhCCchHHHHHhcccc------------------------------------------------
Confidence 99999999998777766677777777765544
Q ss_pred CEEEEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHH
Q psy3968 940 AALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGME 1019 (1080)
Q Consensus 940 ~~~~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~ 1019 (1080)
-++|-+|||++++.|++.|.+.|||+|||||+||||.||++||+
T Consensus 621 ------------------------------------~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNwv~~M~vaid 664 (1149)
T COG1038 621 ------------------------------------GVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNWVEQMRVAID 664 (1149)
T ss_pred ------------------------------------ccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcchhhhhhHHH
Confidence 46778899999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1020 AAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+|+++|+++|+|||||+|++||.+++||++||+++|+||+++|||+|+||| ||||+|.
T Consensus 665 AV~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~ 723 (1149)
T COG1038 665 AVREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPA 723 (1149)
T ss_pred HHHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHH
Confidence 999999999999999999999999999999999999999999999999999 9999996
No 30
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=2.9e-51 Score=445.61 Aligned_cols=182 Identities=49% Similarity=0.825 Sum_probs=166.5
Q ss_pred ccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccc
Q psy3968 804 NKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPF 883 (1080)
Q Consensus 804 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~ 883 (1080)
.|.|.+|||+||||||||+||||++.||++++..+|+. |+||+|+|||||||+|+|+|.||||+++.++.......|+
T Consensus 3 ~k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~--G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~L 80 (472)
T COG5016 3 MKKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKV--GYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKL 80 (472)
T ss_pred cceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhc--CeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHH
Confidence 46799999999999999999999999999997777764 8999999999999999999999999975555444444444
Q ss_pred cceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEe
Q psy3968 884 QMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963 (1080)
Q Consensus 884 q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~ 963 (1080)
||
T Consensus 81 QM------------------------------------------------------------------------------ 82 (472)
T COG5016 81 QM------------------------------------------------------------------------------ 82 (472)
T ss_pred HH------------------------------------------------------------------------------
Confidence 44
Q ss_pred EeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCC
Q psy3968 964 SIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSK 1043 (1080)
Q Consensus 964 ~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1080)
..++.++|.+-+|+|++|++|+++|.+||||++||||||||+|||+.|++++|+.|+|+|++||||+|
T Consensus 83 ------LlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~s------ 150 (472)
T COG5016 83 ------LLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTS------ 150 (472)
T ss_pred ------HHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccC------
Confidence 45667889999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1044 KKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
|+||++||+++||||++||+||||||| ||+|+|.
T Consensus 151 PvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~ 185 (472)
T COG5016 151 PVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPY 185 (472)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEeecccccCChH
Confidence 799999999999999999999999999 9999996
No 31
>KOG0369|consensus
Probab=100.00 E-value=8.9e-49 Score=441.30 Aligned_cols=215 Identities=75% Similarity=1.253 Sum_probs=204.2
Q ss_pred ecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchh
Q psy3968 779 IQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDV 858 (1080)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~ 858 (1080)
..+++|||++|-..||+.+.|.+||.+.++||||||||+||||+|||+|+.|+..++||..|.+.+.||+|+|||||||+
T Consensus 532 ~~pp~G~R~vLl~~GP~~FAk~VRn~~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDV 611 (1176)
T KOG0369|consen 532 TGPPKGWRDVLLEEGPEEFAKAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDV 611 (1176)
T ss_pred CCCCccHHHHHHhhCHHHHHHHHhcCCCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeec
Q psy3968 859 ALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEK 938 (1080)
Q Consensus 859 ~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~ 938 (1080)
++|+|+|.||+++-++......+|+||.++..+
T Consensus 612 amRFLhEcPWeRL~~lRkliPNIPFQmLLRGAN----------------------------------------------- 644 (1176)
T KOG0369|consen 612 AMRFLHECPWERLRELRKLIPNIPFQMLLRGAN----------------------------------------------- 644 (1176)
T ss_pred HHHHHhcChHHHHHHHHHhCCCCcHHHHhcccc-----------------------------------------------
Confidence 999999999998777777777778888765543
Q ss_pred CCEEEEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHH
Q psy3968 939 GAALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGM 1018 (1080)
Q Consensus 939 g~~~~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~ 1018 (1080)
-+++-+|||++|.+|+++|+++|+|++||||+|||+.||...+
T Consensus 645 -------------------------------------avgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~lpnl~lGm 687 (1176)
T KOG0369|consen 645 -------------------------------------AVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYLPNLLLGM 687 (1176)
T ss_pred -------------------------------------cccccCCChhHHHHHHHHHHhcCcceeeehhhhhhhhhhhhhH
Confidence 4678889999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1019 EAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++++|+.+|+|||||+|++||.+.+|+++||+++|++|+.||+|+||||| ||+|.|.
T Consensus 688 eAagkAGGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~ 747 (1176)
T KOG0369|consen 688 EAAGKAGGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPE 747 (1176)
T ss_pred hhhhccCCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHH
Confidence 9999999999999999999999999999999999999999999999999999 9999995
No 32
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=4.5e-47 Score=482.47 Aligned_cols=214 Identities=66% Similarity=1.050 Sum_probs=200.7
Q ss_pred CCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchhee
Q psy3968 781 PPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860 (1080)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~ 860 (1080)
.++|+||+|.++||+.+++|+|++|+|+|||||||||||||||||||+.||.++++.+++...|+||+|+|||||||+++
T Consensus 505 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~ 584 (1143)
T TIGR01235 505 VPRGTKQILDEKGPEGFAEWVRNQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAM 584 (1143)
T ss_pred CCCChHHHHHhhCHHHHHHHHHhcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCC
Q psy3968 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGA 940 (1080)
Q Consensus 861 r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~ 940 (1080)
|++.|+||+++.++......+|+||.
T Consensus 585 rfl~EdPwerl~~~r~~~pn~~~qml------------------------------------------------------ 610 (1143)
T TIGR01235 585 RFLHEDPWERLEDLRKGVPNILFQML------------------------------------------------------ 610 (1143)
T ss_pred HHhcCCHHHHHHHHHHhCCCCceeee------------------------------------------------------
Confidence 99999999976666555555566554
Q ss_pred EEEEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHH
Q psy3968 941 ALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEA 1020 (1080)
Q Consensus 941 ~~~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~ 1020 (1080)
+++.+++.+-+||++++++|+++|.++|||++||||+|||+|||+.++++
T Consensus 611 ------------------------------~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~ 660 (1143)
T TIGR01235 611 ------------------------------LRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDA 660 (1143)
T ss_pred ------------------------------eccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHH
Confidence 45566788889999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCCC
Q psy3968 1021 AGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPVN 1078 (1080)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~~ 1078 (1080)
+|++|+++|+|||||+|++||.+|+||++||+++|++|+++|||+||||| +|+++|..
T Consensus 661 ~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~ 719 (1143)
T TIGR01235 661 VAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAA 719 (1143)
T ss_pred HHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999 99999963
No 33
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=100.00 E-value=1.6e-37 Score=329.94 Aligned_cols=209 Identities=54% Similarity=0.856 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN 158 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~ 158 (1080)
||..++++++++|+|++|+....+++.+++.++++++|||++|||+.|+||+|++++++.++|.++++.+.+++..+|++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~ 80 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD 80 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence 89999999999999999996544599999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Q psy3968 159 GAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTV 238 (1080)
Q Consensus 159 ~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 238 (1080)
+++++|+|++|++|++|++++|+.|++++++.++|+.+++++++++++|++.++++.+++|++.+.++++++||.|.+|+
T Consensus 81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tv 160 (211)
T PF02786_consen 81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEAPAQTLSDEERQKLREAAKKIARALGYVGAGTV 160 (211)
T ss_dssp S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEeeccccchHHHHHHHHHHHHHHHhhCeeecceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCC
Q psy3968 239 EFLCDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPE 287 (1080)
Q Consensus 239 Efivd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~ 287 (1080)
||++++ ++++||||||||++.+|+++++++|+||+++++++++|.+|++
T Consensus 161 ef~~~~~~~~~y~lEvNpR~~~~~p~~e~~tg~dlv~~~~~ia~G~~L~e 210 (211)
T PF02786_consen 161 EFAVDPDDGEFYFLEVNPRLQREHPVTEKVTGYDLVRVQIRIALGEPLDE 210 (211)
T ss_dssp EEEEETTTTEEEEEEEESS--TTHHHHHHHHT--HHHHHHHHHTT--GSC
T ss_pred EEEEccCccceeeecccCCCCCcchHHHHHHCCCHHHHHHHHHCCCCCCC
Confidence 999997 7899999999999999999999999999999999999998863
No 34
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=9.5e-40 Score=389.28 Aligned_cols=181 Identities=43% Similarity=0.728 Sum_probs=164.8
Q ss_pred cceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCcccccccc
Q psy3968 805 KSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQ 884 (1080)
Q Consensus 805 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q 884 (1080)
++++||||||||||||+||+||++.||.++++.+|+ .|+|++|+|||+|||+++|++.|+||++...+......+++|
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~--~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lq 79 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDD--VGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLS 79 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHh--cCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceE
Confidence 578999999999999999999999999999999999 699999999999999999999999998654443333333333
Q ss_pred ceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeE
Q psy3968 885 MLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKS 964 (1080)
Q Consensus 885 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~ 964 (1080)
|
T Consensus 80 m------------------------------------------------------------------------------- 80 (596)
T PRK14042 80 M------------------------------------------------------------------------------- 80 (596)
T ss_pred E-------------------------------------------------------------------------------
Confidence 3
Q ss_pred eeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCC
Q psy3968 965 IDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKK 1044 (1080)
Q Consensus 965 ~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1080)
.+++.+++.+-+||++++++|+++|.++|||++||||+|||+|||+.+++++|++|+++|++||||+| |
T Consensus 81 -----L~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~s------p 149 (596)
T PRK14042 81 -----LLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTS------P 149 (596)
T ss_pred -----EeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCC------C
Confidence 45566678888999999999999999999999999999999999999999999999999999999996 6
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1045 KYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+||++||+++|++|+++|||+||||| +|+++|.
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~ 183 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPT 183 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHH
Confidence 99999999999999999999999999 9999996
No 35
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=2.4e-36 Score=387.59 Aligned_cols=356 Identities=21% Similarity=0.271 Sum_probs=284.1
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccc-------------ccHHHHHHHHHcCCcEeC
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLS-------------ERSDFAQAVLDAGIRFIG 68 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~ls-------------E~~~~a~~l~~~gi~~iG 68 (1080)
|.+..+||+.|.+ +++++.|+++|+++++|+|+|++|... |+..+++ +...|+.++|
T Consensus 622 std~~~aD~~y~~---------pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~-~~~~gi~i~G 691 (1102)
T PLN02735 622 STDYDTSDRLYFE---------PLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSA-SGNGNVKIWG 691 (1102)
T ss_pred cCCcccCCeEEEE---------eCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhh-hhcCCeEEEC
Confidence 4667889999986 466999999999999999999988322 1122222 2334899999
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHH
Q psy3968 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRA 148 (1080)
Q Consensus 69 ps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~ 148 (1080)
|+++++.++.||..++++++++|||+|++ ..+++.+++.++++++|||+||||++|+||+|+++|++.+||.++++.+
T Consensus 692 ~s~e~i~i~~DK~~~k~~l~~~GIp~p~~--~~v~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a 769 (1102)
T PLN02735 692 TSPDSIDAAEDRERFNAILNELKIEQPKG--GIARSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETA 769 (1102)
T ss_pred CCHHHHHHhcCHHHHHHHHHHcCCCCCCe--eEeCCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHH
Confidence 99999999999999999999999999998 5688999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecc--ccccccEEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3968 149 SSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCS--VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKL 226 (1080)
Q Consensus 149 ~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~--~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i 226 (1080)
.+. +++++++||+||++.+|+++++++|++|+++.....+.. ...+........|++.++++..+++++.+.++
T Consensus 770 ~~~----~~~~~vlVEefI~~g~Ei~V~vl~D~~G~vv~~~i~e~~~~~gvhsGds~~~~P~~~L~~e~~~~i~~~a~ki 845 (1102)
T PLN02735 770 VEV----DPERPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIPSSCLATIRDWTTKL 845 (1102)
T ss_pred HHh----cCCCCEEEEEecCCcEEEEEEEEECCCCCEEEecceEeeeccCccCCCccEEecCCCCCHHHHHHHHHHHHHH
Confidence 654 345689999999866999999999988887653222111 11111223345687789999999999999999
Q ss_pred HHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeee
Q psy3968 227 AKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRV 306 (1080)
Q Consensus 227 ~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri 306 (1080)
+++||+.|++++||+++++|++||+|||||+++++++++.++|+|+++.++++++|++|.++++.+... +..+++++++
T Consensus 846 ~~~L~~~G~~~vqf~v~~dg~~yviEiNpR~s~t~p~~~katGidl~~~~~~~~~G~~l~~~~~~~~~~-~~~~~vk~~v 924 (1102)
T PLN02735 846 AKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAIGHPLAKYASLVMSGKSLKDLGFTEEVI-PAHVSVKEAV 924 (1102)
T ss_pred HHHcCCcceeeEEEEEcCCCcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhhcCCCcccc-cCeEEEEecc
Confidence 999999999999999988888999999999999999999999999999999999999998887766543 3667999999
Q ss_pred ccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccC-CeeEEEEEec--CChHHHHHHHHHHh
Q psy3968 307 TTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYD-SLLVKVIAHA--ADLQSSCAKMNRAL 375 (1080)
Q Consensus 307 ~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~d-s~l~~Via~G--~t~~eA~~~a~ral 375 (1080)
++.+...+..+..|. ++.+.+++.|++.+...++.+..+++++. +.-|.++... .+..+....+++..
T Consensus 925 f~~~~~~~~d~~lg~-emkStGe~~g~~~~~~~a~~ka~~~~~~~~p~~g~vliSv~d~~K~~~~~~a~~L~ 995 (1102)
T PLN02735 925 LPFDKFQGCDVLLGP-EMRSTGEVMGIDYEFSKAFAKAQIAAGQRLPLSGTVFISLNDLTKPHLVPIARGFL 995 (1102)
T ss_pred CChhhCCCCCCCcce-EEEeCCceeeecCCHHHHHHHHHhcCCCccCCCCeEEEEEecCCchhHHHHHHHHH
Confidence 887776655555664 78888899999888766777766665432 2334444333 34555555444443
No 36
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=6.6e-39 Score=370.41 Aligned_cols=183 Identities=44% Similarity=0.773 Sum_probs=164.8
Q ss_pred cccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCcccccc
Q psy3968 803 QNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIP 882 (1080)
Q Consensus 803 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp 882 (1080)
++|+|.|||||||||||||+|+||++.|+.++++.+|+. |+|+||+|||+|||+|+|++.|+||++.-.+.-....++
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~--G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~ 86 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKI--GYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTR 86 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhc--CCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCc
Confidence 356799999999999999999999999999999999987 999999999999999999999999986433332222222
Q ss_pred ccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEE
Q psy3968 883 FQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVV 962 (1080)
Q Consensus 883 ~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v 962 (1080)
+|
T Consensus 87 lq------------------------------------------------------------------------------ 88 (468)
T PRK12581 87 LQ------------------------------------------------------------------------------ 88 (468)
T ss_pred ee------------------------------------------------------------------------------
Confidence 22
Q ss_pred eEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCC
Q psy3968 963 KSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPS 1042 (1080)
Q Consensus 963 ~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1080)
...++.+++++.+||+++++.|+++|.++|||++||||+|||+|||+.+++++|++|+++|++||||+|
T Consensus 89 ------mLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~s----- 157 (468)
T PRK12581 89 ------MLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTS----- 157 (468)
T ss_pred ------eeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeC-----
Confidence 335556788999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1043 KKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
|+||++||+++|++++++|||+||||| +|+++|.
T Consensus 158 -p~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~ 192 (468)
T PRK12581 158 -PVHTLNYYLSLVKELVEMGADSICIKDMAGILTPK 192 (468)
T ss_pred -CcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence 699999999999999999999999999 9999995
No 37
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=407.39 Aligned_cols=213 Identities=61% Similarity=0.998 Sum_probs=196.1
Q ss_pred CCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchhee
Q psy3968 781 PPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860 (1080)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~ 860 (1080)
+++|+||+|++.||+.+++|+|++|+|.||||||||||||++++||++.|+.++++.+++.++|+|+||+||++|||+++
T Consensus 507 ~~~~~~~~~~~~g~~~~~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~ 586 (1146)
T PRK12999 507 PPAGTKQILDELGPEGFADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAY 586 (1146)
T ss_pred CCCchHHHhhhcCHHHHHHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCC
Q psy3968 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGA 940 (1080)
Q Consensus 861 r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~ 940 (1080)
|++.++||++.-.+......+++|
T Consensus 587 r~l~e~p~erl~~~r~~~~~~~~q-------------------------------------------------------- 610 (1146)
T PRK12999 587 RFLKEDPWERLAELREAAPNVLFQ-------------------------------------------------------- 610 (1146)
T ss_pred cccCCCHHHHHHHHHHhCCCCeEE--------------------------------------------------------
Confidence 999999998643332222222222
Q ss_pred EEEEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHH
Q psy3968 941 ALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEA 1020 (1080)
Q Consensus 941 ~~~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~ 1020 (1080)
...++.+++.+-+||+++++.|++.|.++|||++||||+|||++||+.++++
T Consensus 611 ----------------------------~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~ 662 (1146)
T PRK12999 611 ----------------------------MLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDA 662 (1146)
T ss_pred ----------------------------EEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHH
Confidence 3455667788899999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1021 AGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+|++|+++|++||||+|++||.+++||++||+++|++|+++|||+||||| +|+++|.
T Consensus 663 vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~ 720 (1146)
T PRK12999 663 VRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPA 720 (1146)
T ss_pred HHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999 9999995
No 38
>PLN02257 phosphoribosylamine--glycine ligase
Probab=100.00 E-value=1e-34 Score=340.88 Aligned_cols=355 Identities=19% Similarity=0.216 Sum_probs=261.6
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC
Q psy3968 22 EAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP 101 (1080)
Q Consensus 22 ~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~ 101 (1080)
.++.|.+.|+++|+++++|+|+++++... ...+++.|+..|++++||+++++++++||..+|++|+++|||+|++ ..
T Consensus 46 ~~~~d~~~l~~~a~~~~id~vvvg~E~~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~--~~ 122 (434)
T PLN02257 46 LDISDSAAVISFCRKWGVGLVVVGPEAPL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKY--ET 122 (434)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCe--EE
Confidence 36788999999999999999999987322 1577888999999999999999999999999999999999999998 56
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEE
Q psy3968 102 ITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLG 179 (1080)
Q Consensus 102 v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~ 179 (1080)
+++.+++.+++++++||+||||..+++|+||+++++.+|+.++++.+... ..|+ +..++||+||+| +|+++.++.
T Consensus 123 ~~~~~e~~~~~~~~g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~--~~fg~~~~~vlIEefi~G-~E~Sv~~~~ 199 (434)
T PLN02257 123 FTDPAAAKKYIKEQGAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVK--GAFGSAGSEVVVEEFLDG-EEASFFALV 199 (434)
T ss_pred eCCHHHHHHHHHHcCCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CEEEEEEEE
Confidence 88999999999999999999999999999999999999999999887542 2344 358999999999 699999988
Q ss_pred ecCCcEEEEEee-ecc--c----cccccEEEEEcCCCCCCHHHHHHHH-HHHH---HHHHHcC--CcceEEEEEEEc-CC
Q psy3968 180 DKAGNVVHLYER-DCS--V----QRRHQKVVEIAPAPHLDINVRNKMT-DLAV---KLAKHVG--YSNAGTVEFLCD-ES 245 (1080)
Q Consensus 180 d~~G~vv~l~~r-~~~--~----~~~~~~~~~~~Pa~~l~~~~~~~l~-~~a~---~i~~alg--~~G~~~vEfivd-~d 245 (1080)
|+. .++.+..- +.. + ..+......++|++.++++..+++. +++. +.+++.| |.|..++||+++ .+
T Consensus 200 dG~-~~~pl~~~~dhkr~~d~d~g~ntggmg~~sp~p~l~~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~ 278 (434)
T PLN02257 200 DGE-NAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTPELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKS 278 (434)
T ss_pred CCC-cEEEEEeeeecccccCCCCCCCCCCCeeEecCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCC
Confidence 854 45444321 110 0 0112234457788778988888754 3343 4445655 458889999998 67
Q ss_pred CCEEEEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEE
Q psy3968 246 GQFYFIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEV 324 (1080)
Q Consensus 246 G~~~~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~ 324 (1080)
|++||||+|+|+|. ++..+...++.||++++++++.|. ++.+.+....-..-+..+...-||..+..++. ..|. ..
T Consensus 279 g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~-l~~~~~~~~~~~av~vv~a~~gYp~~~~~g~~-i~~~-~~ 355 (434)
T PLN02257 279 GLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGE-LSGVSLTWSPDSAMVVVMASNGYPGSYKKGTV-IKNL-DE 355 (434)
T ss_pred CCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCC-CCCCCceECCCceEEEEEcCCCCCCCCCCCCE-eeCC-cc
Confidence 78999999999997 466666669999999999999997 43322211111112233333334444443332 1121 10
Q ss_pred EEcCCcceEEEcC-Ccc--CCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 325 FRSGEGMGIRLDG-ASA--FAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 325 ~~~~~~~gvr~d~-~~~--~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
... ..+++.+.. +.. ..|..++.+ +|+..|++.|+|.++|+++++++++.|++.|. ++||..
T Consensus 356 ~~~-~~~~~~v~~a~~~~~~~~~~~t~g--gRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~DIg~ 422 (434)
T PLN02257 356 AEA-VAPGVKVFHAGTALDSDGNVVAAG--GRVLGVTAKGKDIAEARARAYDAVDQIDWPGGFFRRDIGW 422 (434)
T ss_pred ccc-cCCCCEEEECCceEccCCEEEECC--CeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhH
Confidence 000 001221211 111 245666666 89999999999999999999999999999997 899997
No 39
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.3e-34 Score=336.42 Aligned_cols=345 Identities=17% Similarity=0.231 Sum_probs=260.3
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
++.|.+.|+++|+++++|+|+++.+... ...+++.|++.|++++||+++++++++||..+|++|+++|||+|++ ..+
T Consensus 12 ~~~d~~~l~~~~~~~~id~vi~g~E~~l-~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~--~~~ 88 (379)
T PRK13790 12 SESDHQAILDFAKQQNVDWVVIGPEQPL-IDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADY--KEV 88 (379)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCE--EEE
Confidence 7889999999999999999999987422 2467888999999999999999999999999999999999999998 568
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecC
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~ 182 (1080)
.+.+++.+++++++||+||||..++||+||++|++.+|+.++++.+.... .++.++||+||+| .|+++.++.+++
T Consensus 89 ~~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~ 163 (379)
T PRK13790 89 ERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD 163 (379)
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence 89999999999999999999999999999999999999999998875321 1357999999999 899999998754
Q ss_pred CcEEE-EEeeecc------ccccccEEEEEcCCCCCCHHHHHHH-HHHHHHHHHHc---CC--cceEEEEEEEcCCCCEE
Q psy3968 183 GNVVH-LYERDCS------VQRRHQKVVEIAPAPHLDINVRNKM-TDLAVKLAKHV---GY--SNAGTVEFLCDESGQFY 249 (1080)
Q Consensus 183 G~vv~-l~~r~~~------~~~~~~~~~~~~Pa~~l~~~~~~~l-~~~a~~i~~al---g~--~G~~~vEfivd~dG~~~ 249 (1080)
..+.. ...++.. ...+.......+|++.++++..+++ .+++.+++++| |+ .|+.++||+++++| +|
T Consensus 164 ~~~~~~~~~~~~kr~~~~d~g~~tgg~~~~~p~~~l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~~g-~~ 242 (379)
T PRK13790 164 LAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDG-PK 242 (379)
T ss_pred EEEecccccccccccccCCCCCcCCCCceEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-eE
Confidence 32211 1111100 0001122334567767887776555 56666666666 54 68999999999777 99
Q ss_pred EEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcC
Q psy3968 250 FIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSG 328 (1080)
Q Consensus 250 ~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~ 328 (1080)
++|+|+|+|+ +..++...+|+|+++.++++++|.+++ +........+..+....||..+..+.. |......
T Consensus 243 viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g~~~~---~~~~~~~~~~v~~~s~gyp~~~~~~~~-----i~~~~~~ 314 (379)
T PRK13790 243 VIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTE---FKWKNESIVGVMLASKGYPDAYEKGHK-----VSGFDLN 314 (379)
T ss_pred EEEEEcccCCCcceeeecccCCCHHHHHHHHHcCCCCc---eeEcCCCEEEEEEccCCCCCCCCCCCe-----eeecCCC
Confidence 9999999998 555666668999999999999998643 222222234555555667766543322 1111100
Q ss_pred CcceEEEcCCc-cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 329 EGMGIRLDGAS-AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 329 ~~~gvr~d~~~-~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
. .+ ...+. ...|..++.+ +|++.|++.|+|.++|+++++++++.+.+.|. ++||..
T Consensus 315 ~--~~-~~~~~~~~~~~~~~~g--gRv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~R~dig~ 373 (379)
T PRK13790 315 E--NY-FVSGLKKQGDTFVTSG--GRVILAIGKGDNVQDAQRDAYEKVSQIQSDHLFYRHDIAN 373 (379)
T ss_pred C--eE-EECCccccCCeEEECC--CeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEeechhhh
Confidence 0 01 11111 1245566665 79999999999999999999999999999997 899987
No 40
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=2.2e-34 Score=337.91 Aligned_cols=351 Identities=18% Similarity=0.254 Sum_probs=258.7
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC
Q psy3968 22 EAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP 101 (1080)
Q Consensus 22 ~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~ 101 (1080)
-++.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++||+..++++++||..+|++|+++|||+|++ ..
T Consensus 52 ~~~~d~~~l~~~a~~~~iD~Vv~g~E~~l-~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~--~~ 128 (426)
T PRK13789 52 FSILDKSSVQSFLKSNPFDLIVVGPEDPL-VAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASY--KT 128 (426)
T ss_pred cCcCCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCe--Ee
Confidence 36789999999999999999999876322 1457788899999999999999999999999999999999999998 56
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC--CcEEEeeccCCCcEEEEEEEE
Q psy3968 102 ITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN--GAMFIEKFIERPRHIEVQLLG 179 (1080)
Q Consensus 102 v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~--~~vlVEeyI~G~~ei~v~vl~ 179 (1080)
+++.+++.+++++++||+||||..+++|+||++|++.+|+.++++.+.... .||+ ..++|||||+| +|+++.++.
T Consensus 129 ~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~--~~g~~~~~vlIEEfl~G-~E~Sv~~~~ 205 (426)
T PRK13789 129 FTEYSSSLSYLESEMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDK--KFGQSGNQVVIEEFMEG-QEASIFAIS 205 (426)
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhc--cccCCCCeEEEEECcCC-eEEEEEEEE
Confidence 889999999999999999999999999999999999999999999887542 2442 47999999999 899999998
Q ss_pred ecCCcEEEE-Eeeecccc------ccccEEEEEcCCCCCCHHHHHHHHH-HHHHHH---HHcC--CcceEEEEEEEcCCC
Q psy3968 180 DKAGNVVHL-YERDCSVQ------RRHQKVVEIAPAPHLDINVRNKMTD-LAVKLA---KHVG--YSNAGTVEFLCDESG 246 (1080)
Q Consensus 180 d~~G~vv~l-~~r~~~~~------~~~~~~~~~~Pa~~l~~~~~~~l~~-~a~~i~---~alg--~~G~~~vEfivd~dG 246 (1080)
++. .++.+ ..++.... .+......++|++.++++..+++.+ ++.+++ +++| |+|+.++||+++++|
T Consensus 206 dg~-~~~~lp~~~d~k~~~d~d~g~~tggmg~~~P~p~~~~~~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~~g 284 (426)
T PRK13789 206 DGD-SYFLLPAAQDHKRAFDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEG 284 (426)
T ss_pred CCC-EEEEccceEecccccCCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcCCC
Confidence 753 33322 11111110 1122345678987788888888765 444544 5546 789999999999888
Q ss_pred CEEEEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCc-eEE
Q psy3968 247 QFYFIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGR-IEV 324 (1080)
Q Consensus 247 ~~~~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~-i~~ 324 (1080)
++|++|+|+|+|. +.+.+....+.||++++++++.|+ ++...+. . ..++++...+.+..... .+..|. |.
T Consensus 285 ~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g~-l~~~~~~---~-~~~~s~~vv~a~~gyp~--~~~~g~~i~- 356 (426)
T PRK13789 285 EPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTGK-IKVVNLK---L-KQGAAAVVVLAAQGYPD--SYEKNIPLN- 356 (426)
T ss_pred CEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcCC-CCCCCce---e-cCCceEEEEECcCCcCC--CcCCCCEEe-
Confidence 8999999999987 333434445689999999999997 3322211 1 12334444443322111 112232 22
Q ss_pred EEcCCcceEEEcC-Cc-cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 325 FRSGEGMGIRLDG-AS-AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 325 ~~~~~~~gvr~d~-~~-~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
.......++++.. +. ...|..++.+ +|+..|++.|+|.++|+++++++++.+++.|. ++||..
T Consensus 357 ~~~~~~~~~~if~a~~~~~~~~~~t~g--gRvl~v~~~g~~~~~A~~~ay~~~~~i~~~~~~~R~Dig~ 423 (426)
T PRK13789 357 LPETSGQNVVLFHAGTKKKDGKVFSSG--GRILGIVAQGKDLKDSVDQAYSFLEKIQAPKTFYRKDIGR 423 (426)
T ss_pred ccCcCCCCcEEEEeeeeeeCCEEEeCC--CeEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEeccccc
Confidence 2111112333321 10 1245566555 79999999999999999999999999999997 888875
No 41
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=100.00 E-value=7.8e-34 Score=331.32 Aligned_cols=347 Identities=19% Similarity=0.200 Sum_probs=260.1
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++..++||+.|.+ +|.|.+.+.++|+++++|+|+|..+... ......+++.|+++ .+++++++++.||
T Consensus 33 ~~~~~~~ad~~~~~--------~~~d~~~l~~~~~~~~id~v~~~~e~v~--~~~~~~l~~~g~~~-~~~~~~~~~~~dK 101 (380)
T TIGR01142 33 NAPAMQVAHRSYVI--------NMLDGDALRAVIEREKPDYIVPEIEAIA--TDALFELEKEGYFV-VPNARATKLTMNR 101 (380)
T ss_pred CCchhhhCceEEEc--------CCCCHHHHHHHHHHhCCCEEEeccCccC--HHHHHHHHhcCCee-CCCHHHHHHhhCH
Confidence 35677889998876 4778999999999999999999887654 33445778889864 5899999999999
Q ss_pred HHHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCC
Q psy3968 81 VAARQAA-IDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNG 159 (1080)
Q Consensus 81 ~~~r~~l-~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~ 159 (1080)
..+++++ +++|||+|++ ..+++.+++.+++++++||+|+||.+|+||+|+++|++.+||.++++.+...+. ..++
T Consensus 102 ~~~~~~~~~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~ 177 (380)
T TIGR01142 102 EGIRRLAAEELGLPTSRY--MFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAG 177 (380)
T ss_pred HHHHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcc--CCCC
Confidence 9999985 8999999998 568899999999999999999999999999999999999999999988754221 1245
Q ss_pred cEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Q psy3968 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239 (1080)
Q Consensus 160 ~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 239 (1080)
++++|+||+|..|+++.++.+.+|++..... ...............|+ .++++..+++.+.+.+++++||+.|++++|
T Consensus 178 ~~ivEe~i~~~~E~sv~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~p~-~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie 255 (380)
T TIGR01142 178 RVIVEEFIDFDYEITLLTVRHVDGNTTFCAP-IGHRQIDGDYHESWQPQ-EMSEKALEEAQRIAKRITDALGGYGLFGVE 255 (380)
T ss_pred CEEEEEecCCCEEEEEEEEEcCCCCEEEecC-cceEEeCCeeEEEECCC-CCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Confidence 7999999997689999888776776443211 11122222333346777 589999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCC
Q psy3968 240 FLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDT 319 (1080)
Q Consensus 240 fivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~ 319 (1080)
|+++++ ++|++|||||++++...+....|+|+++.++++++|.+++.... .+.++...+.+.... .+.-..
T Consensus 256 ~~~~~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~r~~~G~~~~~~~~-------~~~~~~~~i~~~~~g-~~~~~~ 326 (380)
T TIGR01142 256 LFVKGD-EVIFSEVSPRPHDTGMVTLISQGLSEFALHVRAILGLPIPGIPQ-------LGPAASAVIKAKVTG-YSPAFR 326 (380)
T ss_pred EEEECC-cEEEEEeecCCCCCceEEeeecCCCHHHHHHHHHcCCCCCCccc-------cCCceEEEEEccccc-ccchhh
Confidence 999866 59999999999997555444569999999999999998864221 122333334433211 010001
Q ss_pred CceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEc
Q psy3968 320 GRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVR 381 (1080)
Q Consensus 320 G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~ 381 (1080)
|... ....+++++... ..+|. ....++|+|++.|+|.+++.+++.++++.++|+
T Consensus 327 ~~~~---~~~~~~~~~~~~-~k~~~----~~~~~~G~v~~~~~s~~~~~~~~~~~~~~i~~~ 380 (380)
T TIGR01142 327 GLEK---ALSVPNTQVRLF-GKPEA----YVGRRLGVALATAKSVEAARERAEEVAHAVEVR 380 (380)
T ss_pred HHHH---HHcCCCCEEEEC-CCCcC----CCCCcCEEEEEecCCHHHHHHHHHHHHhhccCC
Confidence 1111 111233333321 22332 123699999999999999999999999998875
No 42
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=1.3e-33 Score=333.51 Aligned_cols=347 Identities=21% Similarity=0.258 Sum_probs=253.0
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC
Q psy3968 22 EAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP 101 (1080)
Q Consensus 22 ~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~ 101 (1080)
.++.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++|++++++++++||..+|++|+++|||+|++ ..
T Consensus 46 ~~~~d~~~l~~~~~~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~ 122 (420)
T PRK00885 46 IDVTDIEALVAFAKEEGIDLTVVGPEAPL-VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAY--ET 122 (420)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCe--EE
Confidence 35688999999999999999999876322 2456778888999999999999999999999999999999999998 56
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEE
Q psy3968 102 ITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLG 179 (1080)
Q Consensus 102 v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~ 179 (1080)
+.+.+++.+++++++||+|+||..++||+|+++|++.+|+.++++.+.+.+ .++ ...++||+||+| +|+++.++.
T Consensus 123 ~~~~~~~~~~~~~~~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~vlvEe~i~G-~E~sv~~~~ 199 (420)
T PRK00885 123 FTDAEEALAYLDEKGAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGN--KFGDAGARVVIEEFLDG-EEASFFAFV 199 (420)
T ss_pred eCCHHHHHHHHHHcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcc--cccCCCCeEEEEEccCC-cEEEEEEEE
Confidence 899999999999999999999999999999999999999999998876532 122 357999999999 899999998
Q ss_pred ecCCcEEEEE-eeeccc------cccccEEEEEcCCCCCCHHHHHHHHH-HHHHH---HHHcC--CcceEEEEEEEcCCC
Q psy3968 180 DKAGNVVHLY-ERDCSV------QRRHQKVVEIAPAPHLDINVRNKMTD-LAVKL---AKHVG--YSNAGTVEFLCDESG 246 (1080)
Q Consensus 180 d~~G~vv~l~-~r~~~~------~~~~~~~~~~~Pa~~l~~~~~~~l~~-~a~~i---~~alg--~~G~~~vEfivd~dG 246 (1080)
+++ .+..+. .++... ..+.......+|++.++++..+++.+ ++.++ ++++| ++|++|+||+++++|
T Consensus 200 ~g~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~~g 278 (420)
T PRK00885 200 DGE-NVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITKDG 278 (420)
T ss_pred CCC-ceEeceeeEeeeecccCCCCCCCCCCceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEECCC
Confidence 754 443322 121110 01112234467876688777766654 55544 44545 579999999999777
Q ss_pred CEEEEEEeccCCCC-ccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEe----eeccCCCCCCCCCCCCc
Q psy3968 247 QFYFIEVNARLQVE-HTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQC----RVTTEDPAKNFQPDTGR 321 (1080)
Q Consensus 247 ~~~~iEvNpR~~g~-~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~----ri~ae~p~~~f~p~~G~ 321 (1080)
+|++|+|||+|+. +......++.|+++.+++++.|... ++.+.. .+..++.. +.|++++..+... .|.
T Consensus 279 -~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~~~-~~~~~~----~~~~a~~~~~~~~gy~~~~~~~~~i-~~~ 351 (420)
T PRK00885 279 -PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGKLD-EVELEW----DDRAAVGVVLAAKGYPGDYRKGDVI-TGL 351 (420)
T ss_pred -cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCCCC-CCCceE----CCCcEEEEEEeCCCCCCCCCCCCEe-ecc
Confidence 8999999999884 4344455678999999999999743 222211 12233333 3455444333221 111
Q ss_pred eEEEEcCCcceEEEcCCc-cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 322 IEVFRSGEGMGIRLDGAS-AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 322 i~~~~~~~~~gvr~d~~~-~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
. ......+.. .+. ...|..++.+ +|+++|++.|+|+++|+++++++++.+++.|. ++||.+
T Consensus 352 -~---~~~~~~~~~-~~~~~~~~~~~~~g--~R~~~vi~~g~t~~eA~~~a~~~~~~i~~~~~~~r~dig~ 415 (420)
T PRK00885 352 -E---AADADKVFH-AGTKLEDGKLVTNG--GRVLCVTALGDTLEEAQKRAYAALDKIDFDGGFYRRDIGY 415 (420)
T ss_pred -c---ccCCCEEEE-CceeccCCeEEEeC--CEEEEEEEecCCHHHHHHHHHHHHhccCCCCCEeechhhh
Confidence 0 000000111 010 1224455444 79999999999999999999999999999997 899987
No 43
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=3.9e-37 Score=358.82 Aligned_cols=182 Identities=42% Similarity=0.697 Sum_probs=163.7
Q ss_pred ccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccc
Q psy3968 804 NKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPF 883 (1080)
Q Consensus 804 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~ 883 (1080)
.|+|.||||||||||||++|+||++.|+.++++.+|+ .|+|+||+||++||++|+|++.|+||++...+.......++
T Consensus 2 ~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~--~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~l 79 (499)
T PRK12330 2 PRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDN--AGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRL 79 (499)
T ss_pred CCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHh--cCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeE
Confidence 4679999999999999999999999999999999998 58999999999999999999999999864333222222222
Q ss_pred cceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEe
Q psy3968 884 QMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963 (1080)
Q Consensus 884 q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~ 963 (1080)
|
T Consensus 80 q------------------------------------------------------------------------------- 80 (499)
T PRK12330 80 Q------------------------------------------------------------------------------- 80 (499)
T ss_pred E-------------------------------------------------------------------------------
Confidence 2
Q ss_pred EeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCC
Q psy3968 964 SIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSK 1043 (1080)
Q Consensus 964 ~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1080)
...++.+++.+-+|++++++.|+++|.++|||++||||+|||++||+.+++++|++|+|+|++||||+|
T Consensus 81 -----mL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~s------ 149 (499)
T PRK12330 81 -----MLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVS------ 149 (499)
T ss_pred -----EEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecC------
Confidence 346667788999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1044 KKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
|+||++||+++|++|+++|||+||||| +|+++|.
T Consensus 150 p~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~ 184 (499)
T PRK12330 150 PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQ 184 (499)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHH
Confidence 589999999999999999999999999 9999996
No 44
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=100.00 E-value=1.1e-33 Score=364.61 Aligned_cols=355 Identities=22% Similarity=0.328 Sum_probs=277.9
Q ss_pred cchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc-----ccccHHHHHHHHHcCCcEeCCcHHHHHHh
Q psy3968 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGF-----LSERSDFAQAVLDAGIRFIGPSPYVVQQM 77 (1080)
Q Consensus 3 ~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~-----lsE~~~~a~~l~~~gi~~iGps~eai~~~ 77 (1080)
.+..+||+.|..+ ++.+.+.++++++++|+|+|++|+ +++....+..++..|++++|++++++.++
T Consensus 55 ~~~~~aD~~y~~p---------~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~ 125 (1050)
T TIGR01369 55 TDPEMADKVYIEP---------LTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKA 125 (1050)
T ss_pred CChhcCCEEEECC---------CCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHh
Confidence 4667899998862 357899999999999999999874 22223345678889999999999999999
Q ss_pred cCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC
Q psy3968 78 GDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG 157 (1080)
Q Consensus 78 ~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g 157 (1080)
.||..+|++|+++|+|+|++ ..+++.+++.++++++|||+||||+.|.||+|+++|++.+||.+++..+...+ .
T Consensus 126 ~DK~~~k~~l~~~Gipvp~~--~~v~s~~e~~~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~ 199 (1050)
T TIGR01369 126 EDRELFREAMKEIGEPVPES--EIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----P 199 (1050)
T ss_pred CCHHHHHHHHHHCCCCCCCe--eecCCHHHHHHHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----C
Confidence 99999999999999999998 57899999999999999999999999999999999999999999888766432 1
Q ss_pred CCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeec--cccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcce
Q psy3968 158 NGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDC--SVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNA 235 (1080)
Q Consensus 158 ~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~--~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~ 235 (1080)
.++++||+||+|.+|+++++++|.+|+++.+...+. ....+.......+|+..++++..+++++.+.+++++||+.|.
T Consensus 200 ~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~~~~e~~~p~gvh~g~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~ 279 (1050)
T TIGR01369 200 INQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMGVHTGDSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGG 279 (1050)
T ss_pred CCcEEEEEcccCceEEEEEEEEeCCCCEEEEeeceeccCcceecCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcce
Confidence 358999999999889999999998888876522111 011123445667898778999999999999999999999999
Q ss_pred EEEEEEEcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCC
Q psy3968 236 GTVEFLCDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKN 314 (1080)
Q Consensus 236 ~~vEfivd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~ 314 (1080)
+++||++++ +|++|++|||||+++++.+++.++|+|+.+..+++++|.++.++.- .+ .| +++ ..
T Consensus 280 ~~Vef~l~~~~g~~~viEiNPR~~~s~~l~s~atG~pl~~~~~~~alG~~l~~~~n---~i--~g---------~~~-~~ 344 (1050)
T TIGR01369 280 CNVQFALNPDSGRYYVIEVNPRVSRSSALASKATGYPIAKVAAKLAVGYGLDELKN---PV--TG---------TTP-AS 344 (1050)
T ss_pred eEEEEEEECCCCcEEEEEeecCcCcchhhhhHHhCCCHHHHHHHHHcCCCchhhcC---CC--cC---------cCc-cc
Confidence 999999997 4789999999999998888899999999999999999998864321 01 11 222 24
Q ss_pred CCCCCCceEE--EEcCCcceEEEcCCccCCCceeccc--cCCeeEEEEEecCChHHHHHHHHHHhhccEEcccc------
Q psy3968 315 FQPDTGRIEV--FRSGEGMGIRLDGASAFAGAIISPY--YDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVK------ 384 (1080)
Q Consensus 315 f~p~~G~i~~--~~~~~~~gvr~d~~~~~~G~~i~~~--~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~------ 384 (1080)
|.|..+.+.. -+++-. .+.+.....+ + -.+|+|+++|+|+++|.+++.|+|+.- ..|+.
T Consensus 345 ~~p~~~~~~~k~p~~~~~---------~~~~~~~~~~~~~-k~~G~v~~~g~~~~ea~~ka~~~~~~~-~~~~~~~~~~~ 413 (1050)
T TIGR01369 345 FEPSLDYVVVKIPRWDFD---------KFAGVDRKLGTQM-KSVGEVMAIGRTFEEALQKALRSLEIG-ATGFDLPDREV 413 (1050)
T ss_pred cCcCCCeEEEEEEeCCCC---------CCCcccCCcCccc-ceeeEEEEECCCHHHHHHHHHHHhccC-CCCCCccccCC
Confidence 6677776443 223321 1222222222 1 159999999999999999999999763 34441
Q ss_pred cCHHHHHHhccccc
Q psy3968 385 TNIPFLLNVLTNQK 398 (1080)
Q Consensus 385 tni~~l~~il~~~~ 398 (1080)
.+-+-|.+.|.+|.
T Consensus 414 ~~~~~~~~~l~~~~ 427 (1050)
T TIGR01369 414 EPDEDLWRALKKPT 427 (1050)
T ss_pred CCHHHHHHhcCCCC
Confidence 12344667777764
No 45
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=100.00 E-value=6.2e-33 Score=325.41 Aligned_cols=347 Identities=20% Similarity=0.238 Sum_probs=256.5
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++..+||+.+.+ ++.|.+.++++|+++++|+|+|+.+... ......+++.|++++ |+++++++++||.
T Consensus 47 ~~~~~~ad~~~~~--------~~~d~~~l~~~~~~~~id~vi~~~e~~~--~~~~~~l~~~g~~~~-~~~~a~~~~~dK~ 115 (395)
T PRK09288 47 APAMQVAHRSHVI--------DMLDGDALRAVIEREKPDYIVPEIEAIA--TDALVELEKEGFNVV-PTARATRLTMNRE 115 (395)
T ss_pred CchHHhhhheEEC--------CCCCHHHHHHHHHHhCCCEEEEeeCcCC--HHHHHHHHhcCCeeC-CCHHHHHHHhCHH
Confidence 3455677877665 4678899999999999999999887543 233456677888764 8999999999999
Q ss_pred HHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAA-IDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l-~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+|+++ +++|||+|++ ..+++.+++.+++++++||+|+||..|++|+|+++|++.+|+.++++.+...++ -.+++
T Consensus 116 ~~k~~l~~~~gip~p~~--~~~~s~~~l~~~~~~~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~ 191 (395)
T PRK09288 116 GIRRLAAEELGLPTSPY--RFADSLEELRAAVEEIGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGR 191 (395)
T ss_pred HHHHHHHHhCCCCCCCc--eEECCHHHHHHHHHhcCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCC
Confidence 999999 4899999998 578999999999999999999999999999999999999999999988754321 11357
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
++||+||++..|+++.++.+++|....+.... .....+.......|+ .++++..+++.+++.+++++||+.|++|+||
T Consensus 192 ~lvEefi~~~~E~sv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~-~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~ 269 (395)
T PRK09288 192 VIVEEFIDFDYEITLLTVRAVDGGTHFCAPIG-HRQEDGDYRESWQPQ-PMSPAALEEAQEIAKKVTDALGGRGLFGVEL 269 (395)
T ss_pred EEEEEecCCCEEEEEEEEEcCCCCEEEecCcc-cEEECCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEE
Confidence 99999999558999999988665554432111 111112223335677 5899999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++ ++|++|+|||++++...+....|+|+++.+++.++|.++++..+ ...+..+.+++..... .....|
T Consensus 270 ~~~~~-~~~viEinpR~~~~~~~~~~~~g~~~~~~~~~~~lG~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~i~~ 340 (395)
T PRK09288 270 FVKGD-EVYFSEVSPRPHDTGMVTLISQNLSEFELHARAILGLPIPDIRL-------YSPAASAVILAEGESA-NPSFDG 340 (395)
T ss_pred EEeCC-eEEEEEecCCCCCCcceeeeecccCHHHHHHHHHcCCCCCcccc-------cCCceeEEEecccccc-ccchhh
Confidence 99876 59999999999996554433459999999999999988754332 1112233344432211 111112
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG 382 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~G 382 (1080)
...... .+|+++.. + |.. ......++|+|++.|+|.++|+++++++++.++|.|
T Consensus 341 ~~~~~~---~~g~~~~~---~-~k~-~~~~~~~lG~v~~~g~~~~~a~~~~~~~~~~i~~~~ 394 (395)
T PRK09288 341 LAEALA---VPGTDVRL---F-GKP-EIRGGRRMGVALATGEDVEEAREKAKEAASKVKVVG 394 (395)
T ss_pred HHHHhc---CCCCEEEE---e-cCC-CCCCCCeeEEEEeecCCHHHHHHHHHHHHhheeecc
Confidence 111111 22333211 1 111 122236999999999999999999999999999987
No 46
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=4.5e-33 Score=336.66 Aligned_cols=343 Identities=17% Similarity=0.193 Sum_probs=265.9
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++.++||+.+.. +|.|.+.+.++|++ +|+|....+... ....+.++..|+++ +|+++++.+++||.
T Consensus 57 apa~~~AD~~~v~--------~~~D~~~l~~~a~~--~dvIt~e~e~v~--~~~l~~le~~gi~v-~ps~~al~i~~DK~ 123 (577)
T PLN02948 57 CPASSVAARHVVG--------SFDDRAAVREFAKR--CDVLTVEIEHVD--VDTLEALEKQGVDV-QPKSSTIRIIQDKY 123 (577)
T ss_pred CchhhhCceeeeC--------CCCCHHHHHHHHHH--CCEEEEecCCCC--HHHHHHHHhcCCcc-CCCHHHHHHhcCHH
Confidence 5677888887764 68999999999997 788875544332 44557888899874 69999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+|++|+++|||+|+| ..+.+.+++.++++++|||+|+||..++ +|+|+++|++.+|+.++++.+.. + +..
T Consensus 124 ~~K~~l~~~GIptp~~--~~v~~~~el~~~~~~ig~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~-----~-~~~ 195 (577)
T PLN02948 124 AQKVHFSKHGIPLPEF--MEIDDLESAEKAGDLFGYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGG-----F-ERG 195 (577)
T ss_pred HHHHHHHHCCcCCCCe--EEeCCHHHHHHHHHhcCCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhC-----C-CCc
Confidence 9999999999999998 4688999999999999999999999877 79999999999999999887642 1 457
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||++.+|+++.++++.+|++..+ ...+..+.++.......|+ .++++.++++++++.+++++|++.|.+++||
T Consensus 196 vlvEefI~~~~EisV~v~r~~~G~i~~~-p~~E~~~~~~~~~~~~~Pa-~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEf 273 (577)
T PLN02948 196 LYAEKWAPFVKELAVMVARSRDGSTRCY-PVVETIHKDNICHVVEAPA-NVPWKVAKLATDVAEKAVGSLEGAGVFGVEL 273 (577)
T ss_pred EEEEecCCCCeEEEEEEEECCCCCEEEe-cCcccEEECCeeEEEEECC-CCCHHHHHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 9999999998999999998878876653 3333344444445556888 5999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCC-CCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPA-KNFQPDT 319 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~-~~f~p~~ 319 (1080)
+++++|++||+|||||++++.+++...+++|+++.++++++|.|++.... ...+++...+..++.. .++.+..
T Consensus 274 fv~~dG~v~v~EInpRpg~sGh~t~ea~~~s~fe~~vRa~lGlpl~~~~~------~~~~A~m~nl~g~~~~~~g~~~~~ 347 (577)
T PLN02948 274 FLLKDGQILLNEVAPRPHNSGHYTIEACYTSQFEQHLRAVLGLPLGDTSM------KVPAAIMYNILGEDEGEAGFRLAH 347 (577)
T ss_pred EEcCCCcEEEEEEeCCCCCCCceeeecccCCHHHHHHHHHcCCCCCCccc------cCCcEEEEEEeccccccccccchh
Confidence 99999999999999999986667677899999999999999999874322 1234566666655322 1232221
Q ss_pred -CceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEc
Q psy3968 320 -GRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVR 381 (1080)
Q Consensus 320 -G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~ 381 (1080)
+.......|.. .+++.. .++ ..+. .++|||++.|+|.++++++++.+++.+.+.
T Consensus 348 ~~~~~~~~~p~~-~v~~yg---k~~--~r~~--rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~ 402 (577)
T PLN02948 348 QLMGRALNIPGA-SVHWYG---KPE--MRKQ--RKMGHITVVGPSAAEVEARLDQLLAEESAD 402 (577)
T ss_pred hHHHHHhhCCCC-EEEEec---CCC--CCCC--CeeEEEEEecCCHHHHHHHHHHHHhhhccC
Confidence 21111122221 233321 122 2222 699999999999999999999999877643
No 47
>PLN02735 carbamoyl-phosphate synthase
Probab=100.00 E-value=9.8e-33 Score=354.38 Aligned_cols=356 Identities=21% Similarity=0.308 Sum_probs=270.9
Q ss_pred chhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc-ccccHH--H--HHHHHHcCCcEeCCcHHHHHHhc
Q psy3968 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGF-LSERSD--F--AQAVLDAGIRFIGPSPYVVQQMG 78 (1080)
Q Consensus 4 ~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~-lsE~~~--~--a~~l~~~gi~~iGps~eai~~~~ 78 (1080)
+..+||+.|.. .++.+.+.++++++++|+|+|++|. ..++.. + ...|+..|++++|++++++.++.
T Consensus 73 ~~~~aD~~yi~---------p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~ 143 (1102)
T PLN02735 73 DPETADRTYIA---------PMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAE 143 (1102)
T ss_pred ChhhCcEEEeC---------CCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhc
Confidence 34578988764 2356889999999999999998753 222211 1 24577899999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYG-LPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG 157 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ig-fPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g 157 (1080)
||..+|++|+++|||+|++ ..+.+.+++.++++++| ||+||||+++.||+|+.+|++.+||.++++.+... ..
T Consensus 144 DK~~~k~~l~~~GIpvp~~--~~v~s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~----s~ 217 (1102)
T PLN02735 144 DRELFKQAMEKIGLKTPPS--GIATTLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAA----SI 217 (1102)
T ss_pred CHHHHHHHHHHCCCCCCCe--eEeCCHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhc----CC
Confidence 9999999999999999998 56889999999999998 99999999999999999999999999999876542 22
Q ss_pred CCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeec--cccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-c
Q psy3968 158 NGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDC--SVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYS-N 234 (1080)
Q Consensus 158 ~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~--~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G 234 (1080)
+++++||+||.|.+|+++++++|..|+++.+...+. ...-+.......+|++.++++..+++++.+.+++++||++ |
T Consensus 218 ~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~v~~ie~~dp~gvh~G~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G 297 (1102)
T PLN02735 218 TSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECG 297 (1102)
T ss_pred CCeEEEEEecCCCeEEEEEEEEcCCCCEEEEeeEEEEcCCccccCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 568999999999889999999987777765432211 0111234456678987799999999999999999999994 9
Q ss_pred eEEEEEEEcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCC
Q psy3968 235 AGTVEFLCDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAK 313 (1080)
Q Consensus 235 ~~~vEfivd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~ 313 (1080)
.+++||++++ +|++||||||||+++++.+.+.++|+|+.+.++++++|.+++++.- .+.. . ...
T Consensus 298 ~~nVqf~l~~~~g~~~ViEVNPR~s~ss~l~s~atG~~~a~~~~klalG~~l~~~~~---~~~~-----------~-~~a 362 (1102)
T PLN02735 298 GSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPN---DITL-----------K-TPA 362 (1102)
T ss_pred ceEEEEEEECCCCcEEEEEecCCCCCcchhhhhhhCCCHHHHHHHHHCCCChhhhcc---cccc-----------c-cch
Confidence 9999999995 7889999999999999999999999999999999999999875421 1110 0 012
Q ss_pred CCCCCCCceEEEEcCCcceEEEcCCccCCCc--eeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccc-------
Q psy3968 314 NFQPDTGRIEVFRSGEGMGIRLDGASAFAGA--IISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVK------- 384 (1080)
Q Consensus 314 ~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~--~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~------- 384 (1080)
.|.|..+.+... .| |++.. -++|. .+.+.. --.|.|++.|+|++||..|+.|.+.. ...|+.
T Consensus 363 ~~ep~~d~~~~k-~p-----~~~f~-~f~~~~~~l~~~m-ks~ge~m~~gr~~~ea~~ka~~~~~~-~~~~~~~~~~~~~ 433 (1102)
T PLN02735 363 SFEPSIDYVVTK-IP-----RFAFE-KFPGSQPILTTQM-KSVGEAMALGRTFQESFQKALRSLET-GFSGWGCAKVKEL 433 (1102)
T ss_pred heeecCCcEEEE-cc-----cCCcc-cccCCCcccceee-eecceEEEecCCHHHHHHHHHHHhcC-CCCCCCccccccc
Confidence 355655554332 11 11111 11221 121211 14889999999999999999999854 345542
Q ss_pred -cCHHHHHHhccccc
Q psy3968 385 -TNIPFLLNVLTNQK 398 (1080)
Q Consensus 385 -tni~~l~~il~~~~ 398 (1080)
.+.+-+.+.|.+|.
T Consensus 434 ~~~~~~~~~~l~~~~ 448 (1102)
T PLN02735 434 DWDWEQLKYKLRVPN 448 (1102)
T ss_pred cCCHHHHHHhcCCCC
Confidence 22234666677764
No 48
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=100.00 E-value=2e-32 Score=323.88 Aligned_cols=348 Identities=20% Similarity=0.294 Sum_probs=249.0
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC
Q psy3968 22 EAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP 101 (1080)
Q Consensus 22 ~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~ 101 (1080)
.++.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++|++++++++++||..+|++|+++|||+|++ ..
T Consensus 48 ~~~~d~~~l~~~~~~~~id~vi~~~e~~l-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~ 124 (423)
T TIGR00877 48 ISITDIEALVEFAKKKKIDLAVIGPEAPL-VLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEY--EV 124 (423)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECCchHH-HHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCe--EE
Confidence 36789999999999999999999876321 1456788889999999999999999999999999999999999998 56
Q ss_pred CCCHHHHHHHHHHhCCc-EEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEE
Q psy3968 102 ITTTEEAMEFCLKYGLP-VIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLL 178 (1080)
Q Consensus 102 v~s~ee~~~~~~~igfP-vVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl 178 (1080)
+++.+++.+++++++|| +|+||..|+||+|++++++.+|+.++++.+...+ +| +..+++|+||+| .|+++.++
T Consensus 125 ~~~~~~~~~~~~~~g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~---~g~~~~~~lvEe~i~G-~E~sv~~~ 200 (423)
T TIGR00877 125 FTDPEEALSYIQEKGAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQK---FGDAGERVVIEEFLDG-EEVSLLAF 200 (423)
T ss_pred ECCHHHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHh---cCCCCCeEEEEECccC-ceEEEEEE
Confidence 89999999999999999 9999999999999999999999999998876543 33 357999999999 79999999
Q ss_pred EecCCcEEEEE-eeecc----c--cccccEEEEEcCCCCCCHHHHHHH-HHH---HHHHHHHcC--CcceEEEEEEEcCC
Q psy3968 179 GDKAGNVVHLY-ERDCS----V--QRRHQKVVEIAPAPHLDINVRNKM-TDL---AVKLAKHVG--YSNAGTVEFLCDES 245 (1080)
Q Consensus 179 ~d~~G~vv~l~-~r~~~----~--~~~~~~~~~~~Pa~~l~~~~~~~l-~~~---a~~i~~alg--~~G~~~vEfivd~d 245 (1080)
.++. .+..+. .+... . ..........+|++.++++...++ .+. +.+.+.++| ++|++|+||+++++
T Consensus 201 ~dg~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~~ 279 (423)
T TIGR00877 201 VDGK-TVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTKE 279 (423)
T ss_pred EcCC-eEEeceeeeeeeecccCCCCCCCCCCceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEECC
Confidence 8754 333321 11110 0 000112234567666776655443 333 444555554 68999999999988
Q ss_pred CCEEEEEEeccCCCC-ccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEE
Q psy3968 246 GQFYFIEVNARLQVE-HTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEV 324 (1080)
Q Consensus 246 G~~~~iEvNpR~~g~-~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~ 324 (1080)
| +|++|+|||+++. +..+...+++|+.+.+++++.|. ++++.+.. .+..++...+.+... ....+....
T Consensus 280 g-~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g~-l~~~~~~~----~~~~a~~~~~~~~~y----p~~~~~~~~ 349 (423)
T TIGR00877 280 G-PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGK-LDEVELRF----DNRAAVTVVLASEGY----PGDYRKGDP 349 (423)
T ss_pred C-cEEEEEEccCCCccceeEecccCCCHHHHHHHHHcCC-CCCCCceE----CCCceEEEEEecCCc----CCCCCCCCE
Confidence 7 9999999999884 33233446799999999999996 33222211 223444444432221 111111111
Q ss_pred EE---cCCcceEEEcCCc--cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 325 FR---SGEGMGIRLDGAS--AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 325 ~~---~~~~~gvr~d~~~--~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
+. ....+++++.... ...|...+. .+|+++|++.|+|+++|+++++++++.+++.|. ++||..
T Consensus 350 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~vi~~g~~~~~a~~~~~~~~~~i~~~~~~~r~dig~ 419 (423)
T TIGR00877 350 ITGEPLIEAEGVKVFHAGTKQDNGKLVTS--GGRVLAVTALGKSLEEARERAYEAVEYIKFEGMFYRKDIGF 419 (423)
T ss_pred eeCCcccccCCCEEEECceeccCCEEEEc--CCEEEEEEEecCCHHHHHHHHHHHHhcCCCCCCEEecccch
Confidence 11 1111222222110 112333333 379999999999999999999999999999997 899886
No 49
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=2.3e-32 Score=321.72 Aligned_cols=347 Identities=17% Similarity=0.174 Sum_probs=245.8
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCc-ccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGF-LSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP 101 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~-lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~ 101 (1080)
+..|.+.|+++|+++++|+|+++.+. ++ ..++..+++.|++++||+.+++++++||..||++|+++|||+|+.+ ..
T Consensus 50 ~~~d~e~l~~~~~~~~id~Vi~~~d~~l~--~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~ 126 (435)
T PRK06395 50 DEKDYDLIEDFALKNNVDIVFVGPDPVLA--TPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NA 126 (435)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCChHHH--HHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ce
Confidence 45789999999999999999999873 33 4556777889999999999999999999999999999999998653 24
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCH-hHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEe
Q psy3968 102 ITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM-EDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD 180 (1080)
Q Consensus 102 v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~-eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d 180 (1080)
+.+.+++..++.+++||+||||.+++||+||++|++. +++++++..+.... ..++.++|||||+| .|++++++.|
T Consensus 127 ~~~~~e~~~~~~~~~~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~---~~~~~viIEEfl~G-~E~Svd~~~d 202 (435)
T PRK06395 127 CFSEKDAARDYITSMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL---DRDGVVLIEKKMTG-EEFSLQAFSD 202 (435)
T ss_pred eCChHHHHHHHHhhCCCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh---CCCCcEEEEeecCC-ceEEEEEEEc
Confidence 5567888888888899999999999999999999643 33445444443311 01357999999999 7999999997
Q ss_pred cCCcEEEEEeeec--cc----cccccEEEEEc----CCCCCCHHHHHHHHHHHHHHHHHcC-----CcceEEEEEEEcCC
Q psy3968 181 KAGNVVHLYERDC--SV----QRRHQKVVEIA----PAPHLDINVRNKMTDLAVKLAKHVG-----YSNAGTVEFLCDES 245 (1080)
Q Consensus 181 ~~G~vv~l~~r~~--~~----~~~~~~~~~~~----Pa~~l~~~~~~~l~~~a~~i~~alg-----~~G~~~vEfivd~d 245 (1080)
++...+....++. .. ..+..-.+.++ |.|.++++..+++.+++.+++++|+ |+|+.++||+++++
T Consensus 203 g~~~~~l~~~~d~~r~~~~d~gp~tGgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~~ 282 (435)
T PRK06395 203 GKHLSFMPIVQDYKRAYEGDHGPNTGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPN 282 (435)
T ss_pred CCeEEEecccceeeecccCCCCCccCCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeCC
Confidence 5543222111111 10 11111122233 4456899999999999999999999 67888899999977
Q ss_pred CCEEEEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCC-CCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceE
Q psy3968 246 GQFYFIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLP-ELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIE 323 (1080)
Q Consensus 246 G~~~~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~-~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~ 323 (1080)
| +|+||+|+|+|+ +...+....+.|+++.+++++.|. +. ++.+... ..-+..+...-||+++. .|.|.
T Consensus 283 g-p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g~-l~~~~~~~~~--~~~~~~l~~~gYp~~~~------~g~i~ 352 (435)
T PRK06395 283 G-VKVIEINARFADPEGINVLYLLKSDFVETLHQIYSGN-LNGSIKFERK--ATVLKYIVPPGYGENPS------PGRIK 352 (435)
T ss_pred C-cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcCC-CCCCceecCC--CEEEEEEecCCCCCCCC------CCcee
Confidence 7 999999999998 455555667899999999999994 43 2222110 11122233333443332 34332
Q ss_pred EEEcCCcceEEE-cCCcc-CCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 324 VFRSGEGMGIRL-DGASA-FAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 324 ~~~~~~~~gvr~-d~~~~-~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
........++.+ ..+.. ..+..++.+ +|+++|++.|+|+++|+++++++++.|+ .|. ++||.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~s~g--gRv~~vv~~g~~~~eA~~~a~~~~~~I~-~~~~~R~Dig~ 419 (435)
T PRK06395 353 IDKTIFDSNSDVYYASVSGTLNDVKTSG--SRSLAIIAKGDSIPEASEKVDSDLNAVH-GSYYVRRDIGD 419 (435)
T ss_pred ccccccCCCCEEEEeeccccCCCeEECC--CcEEEEEEEcCCHHHHHHHHHHHHhccC-CCcEeecchhh
Confidence 111001122222 11111 122355555 7999999999999999999999999999 665 899987
No 50
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=100.00 E-value=5.3e-32 Score=314.27 Aligned_cols=329 Identities=21% Similarity=0.309 Sum_probs=255.3
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++..++||+.+.. +|.|.+.+.++++ .+|+|....+... ....+.+++. ..++|+++++.+++||.
T Consensus 37 ~pa~~~ad~~~~~--------~~~D~~~l~~~a~--~~dvit~e~e~i~--~~~l~~l~~~--~~~~p~~~~~~~~~dK~ 102 (372)
T PRK06019 37 SPAAQVADEVIVA--------DYDDVAALRELAE--QCDVITYEFENVP--AEALDALAAR--VPVPPGPDALAIAQDRL 102 (372)
T ss_pred CchhHhCceEEec--------CCCCHHHHHHHHh--cCCEEEeCcCCCC--HHHHHHHhcC--CeeCcCHHHHHHhcCHH
Confidence 5667788888775 6899999999998 6788875544333 4445555555 35679999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+|++|+++|||+|++ ..+++.+++.++++++|||+|+||+.++ +|+|++++++.+|+.++++.+ ++.+
T Consensus 103 ~~k~~l~~~Gip~p~~--~~v~s~~~l~~~~~~~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~ 172 (372)
T PRK06019 103 TEKQFLDKLGIPVAPF--AVVDSAEDLEAALADLGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL--------GSVP 172 (372)
T ss_pred HHHHHHHHCCCCCCCc--eEeCCHHHHHHHHHHcCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc--------CCCC
Confidence 9999999999999998 5689999999999999999999999864 899999999999999988764 3568
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||++.+|+++.++.+.+|++..+ .........+.......|+ .+++++.+++.+++.+++++|||.|++++||
T Consensus 173 ~ivEe~I~~~~E~sv~~~~~~~G~~~~~-p~~e~~~~~gi~~~~~~pa-~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEf 250 (372)
T PRK06019 173 CILEEFVPFEREVSVIVARGRDGEVVFY-PLVENVHRNGILRTSIAPA-RISAELQAQAEEIASRIAEELDYVGVLAVEF 250 (372)
T ss_pred EEEEecCCCCeEEEEEEEECCCCCEEEe-CCcccEEeCCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCccceeEEEE
Confidence 9999999966999999998888887653 3223344444555567888 5999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||+|+|||++++..++..++++|+++.++++.+|.|++...+ ...++...+...+. .. .+
T Consensus 251 f~~~dg~~~v~EinpR~~~sg~~t~~~~~~sqf~~~ira~~Glpl~~~~~-------~~~~~m~nilg~~~---~~--~~ 318 (372)
T PRK06019 251 FVTGDGELLVNEIAPRPHNSGHWTIEACSTSQFEQHLRAILGLPLGTTRL-------LSPAVMVNLLGDDW---LE--PR 318 (372)
T ss_pred EEcCCCeEEEEEecCCccCcccEEhhhcCccHHHHHHHHHcCCCCCCccc-------cCceEEEEEECchh---hh--hH
Confidence 99988899999999999998778888999999999999999998873221 22244444443221 00 11
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhh
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALR 376 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~ 376 (1080)
.......|. ..+++ |......++ ..+|||.+.|+|.+++.++++++..
T Consensus 319 ~~~~~~~~~-~~~~~-----ygk~~~~~~--rk~Ghv~~~~~~~~~~~~~~~~~~~ 366 (372)
T PRK06019 319 WDALLALPG-AHLHL-----YGKAEARPG--RKMGHVTVLGDDVEALLAKLEALAP 366 (372)
T ss_pred HHHHhhCCC-CEEEE-----CCCCCCCCC--CceEEEEeecCCHHHHHHHHHHHHh
Confidence 111111121 12232 323233344 6899999999999999999998876
No 51
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=100.00 E-value=3.2e-31 Score=314.17 Aligned_cols=354 Identities=18% Similarity=0.188 Sum_probs=243.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
+..|.+.|+++|+++++|+|+++.+... ...+++.|++.|++++||+++++++++||..+|++|+++|||+|+.+ ..+
T Consensus 54 ~~~d~~~l~~~a~~~~id~Vi~g~E~~l-~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~-~~~ 131 (486)
T PRK05784 54 NINSPEEVKKVAKEVNPDLVVIGPEEPL-FAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY-KVF 131 (486)
T ss_pred CCCCHHHHHHHHHHhCCCEEEECCchHH-HHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc-eEe
Confidence 4568899999999999999999876211 13577889999999999999999999999999999999999997432 567
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhH-----HHHHHHHHHHHH---HHhcC--CCcEEEeeccCCCcE
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMED-----VEENFQRASSEA---KAAFG--NGAMFIEKFIERPRH 172 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~ee-----L~~a~~~~~~~a---~~~~g--~~~vlVEeyI~G~~e 172 (1080)
++.+++.++++.. +|+||||..++||+||++|++.++ +.+++..+.... ...|+ +..++|||||+| .|
T Consensus 132 ~~~~ea~~~~~~~-~PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G-~E 209 (486)
T PRK05784 132 YDVEEAAKFIEYG-GSVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDG-VE 209 (486)
T ss_pred CCHHHHHHHHhhc-CCEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCC-eE
Confidence 8999999888665 699999999999999999999873 445553333221 12344 358999999999 79
Q ss_pred EEEEEEEecCCcEEEE-Eeeeccccc------cccEEEEEcC----CCCCCHHHHHHHHHHHHHHHHHc----C--Ccce
Q psy3968 173 IEVQLLGDKAGNVVHL-YERDCSVQR------RHQKVVEIAP----APHLDINVRNKMTDLAVKLAKHV----G--YSNA 235 (1080)
Q Consensus 173 i~v~vl~d~~G~vv~l-~~r~~~~~~------~~~~~~~~~P----a~~l~~~~~~~l~~~a~~i~~al----g--~~G~ 235 (1080)
++|+++.|++ .++.+ ..++..... +.......+| .|.++++..+++.+++...++++ | |+|+
T Consensus 210 ~SV~al~dG~-~~~~l~~~qd~k~~~~~d~gpntGgmg~~~p~~~~~P~~~~~~~~~~~~~v~~~l~al~~~~g~~~~G~ 288 (486)
T PRK05784 210 YTLQVLTDGE-TVIPLPLAQDYPHAYEDGIGPETGGMGSISGPGELLPFINEEEYEEAVEIVKRTIDAIYKETGERYVGV 288 (486)
T ss_pred EEEEEEECCC-eEEEeeeeEeecceecCCCCCCCCCCcccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 9999998754 33322 122211110 1112233456 55677777777777777666555 3 3599
Q ss_pred EEEEEEEc-CCCCEEEEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCC
Q psy3968 236 GTVEFLCD-ESGQFYFIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAK 313 (1080)
Q Consensus 236 ~~vEfivd-~dG~~~~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~ 313 (1080)
.|+||+++ ++| +++||+|+|+++ +.+.+...++.|+++.+++++.|+ |.++.+... +..++...+.+.....
T Consensus 289 l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~g~-l~~~~~~~~----~~~~~~vv~as~gYp~ 362 (486)
T PRK05784 289 ISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAATGK-LSKAKIKFN----EEPSVVKAIAPLGYPL 362 (486)
T ss_pred EEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHHcCC-CCCCCeeec----CCceEEEEECCCCCCC
Confidence 99999999 777 999999999998 333333346669999999999997 433222111 1223333333322111
Q ss_pred CCCCCCCceEEEEcC--CcceEEEc-CCc-cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhcc-EEccc--ccC
Q psy3968 314 NFQPDTGRIEVFRSG--EGMGIRLD-GAS-AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREF-RVRGV--KTN 386 (1080)
Q Consensus 314 ~f~p~~G~i~~~~~~--~~~gvr~d-~~~-~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i-~I~Gv--~tn 386 (1080)
.+.+..|........ ...++.+. .+. ...|..++.+ +|+..|++.|+|.++|+++++++++.| .+.|. ++|
T Consensus 363 ~~~~~~g~~i~~~~~~~~~~~~~v~~ag~~~~~~~~~t~g--gRvl~v~~~~~~l~~A~~~ay~~~~~i~~~~~~~yR~D 440 (486)
T PRK05784 363 SRDLASGRRIVVDLDKIKEEGCLVFFGSVELEGGQLITKG--SRALEIVAIGKDFEEAYEKLERCISYVSSDTKLIYRTD 440 (486)
T ss_pred cccCCCCCEEECCccccccCCCEEEECCceeeCCEEEEcC--CCeEEEEEEeCCHHHHHHHHHHHHhhccCCCCCCcccc
Confidence 111223321111100 00111111 111 1345566666 899999999999999999999999999 89887 888
Q ss_pred HHH
Q psy3968 387 IPF 389 (1080)
Q Consensus 387 i~~ 389 (1080)
|..
T Consensus 441 Ig~ 443 (486)
T PRK05784 441 IGS 443 (486)
T ss_pred cCc
Confidence 875
No 52
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=100.00 E-value=9.6e-31 Score=302.05 Aligned_cols=262 Identities=21% Similarity=0.330 Sum_probs=221.3
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
++++.++||+++.. +|.|.+.|.+++++ +|.|....+... ......+++.|+++ +|+++++++++||
T Consensus 33 ~~p~~~~ad~~~~~--------~~~d~~~i~~~a~~--~dvit~e~e~i~--~~~l~~l~~~g~~~-~p~~~~~~~~~dK 99 (352)
T TIGR01161 33 NSPAVQVADHVVLA--------PFFDPAAIRELAES--CDVITFEFEHVD--VEALEKLEARGVKL-FPSPDALAIIQDR 99 (352)
T ss_pred CCChhHhCceeEeC--------CCCCHHHHHHHHhh--CCEEEeCcCcCC--HHHHHHHHhCCCeE-CCCHHHHHHhcCH
Confidence 35778889998843 68899999999985 577765554443 44567788888774 5999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNG 159 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~ 159 (1080)
..+|++|+++|||+|++ ..+.+.+++.+++++++||+|+||..|+ +|+|+++|++.+|+.++++.+ ++.
T Consensus 100 ~~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~ 169 (352)
T TIGR01161 100 LTQKQFLQKLGLPVPPF--LVIKDEEELDAALQELGFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL--------GDR 169 (352)
T ss_pred HHHHHHHHHcCCCCCCc--cEeCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc--------CCC
Confidence 99999999999999998 5688999999999999999999999986 899999999999999888753 245
Q ss_pred cEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Q psy3968 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239 (1080)
Q Consensus 160 ~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 239 (1080)
.+++||||++.+|+++.++.+.+|++.. +.......+.+.......|+ .++++..+++.+++.+++++||+.|++++|
T Consensus 170 ~~lvEe~I~~~~E~sv~~~~~~~G~~~~-~~~~~~~~~~g~~~~~~~p~-~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve 247 (352)
T TIGR01161 170 ECIVEEFVPFERELSVIVARSADGETAF-YPVVENIHQDGILRYVVAPA-AVPDAIQARAEEIARRLMEELGYVGVLAVE 247 (352)
T ss_pred cEEEEecCCCCeEEEEEEEEcCCCCEEE-ECCcccEEeCCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCceeEEEEE
Confidence 8999999996689999999877787654 33323333444444567787 588889999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCC
Q psy3968 240 FLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPE 287 (1080)
Q Consensus 240 fivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~ 287 (1080)
|+++++|++||+|+|||++++..++...+++++++.++++++|.+++.
T Consensus 248 ~~~~~dg~~~v~EinpR~~~sg~~~~~~~~~s~f~~~~ra~~g~~l~~ 295 (352)
T TIGR01161 248 MFVLPDGRLLINELAPRVHNSGHYTLDGCSTSQFEQHLRAILGLPLGS 295 (352)
T ss_pred EEEeCCCcEEEEEecCCCCCcCcCchhhccccHHHHHHHHHcCCCCCC
Confidence 999988899999999999998777888999999999999999999874
No 53
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.4e-30 Score=332.08 Aligned_cols=330 Identities=16% Similarity=0.220 Sum_probs=258.0
Q ss_pred CCCCHHHHHHHHHHc-CCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKEN-DVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP 101 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~-~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~ 101 (1080)
++.|.+.+++++++. .+++|+++.+... ...++.++..|++ |++++++..++||..||++|+++|||+|++ ..
T Consensus 54 d~~d~~~l~~~~~~~~~i~~V~~~se~~v--~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~--~~ 127 (887)
T PRK02186 54 DTSDPDRIHRFVSSLDGVAGIMSSSEYFI--EVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRT--HA 127 (887)
T ss_pred CCCCHHHHHHHHHhcCCCCEEEeCchhhH--HHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--EE
Confidence 677899999999987 6899999876544 3455666778876 799999999999999999999999999998 56
Q ss_pred CCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEec
Q psy3968 102 ITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDK 181 (1080)
Q Consensus 102 v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~ 181 (1080)
+++.+++.+++++++||+||||.+|+||+||++|+|.+|+.++++.+.. .+++++++|+||+| .||+++++.++
T Consensus 128 v~~~~e~~~~~~~~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~-----~~~~~~lvEEfI~G-~E~sVe~i~~~ 201 (887)
T PRK02186 128 LALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR-----AGTRAALVQAYVEG-DEYSVETLTVA 201 (887)
T ss_pred eCCHHHHHHHHHhCCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHh-----cCCCcEEEeecccC-CcEEEEEEEEC
Confidence 8899999999999999999999999999999999999999999887654 23568999999999 89999999875
Q ss_pred CCcE-EEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEcCCCCEEEEEEeccCCC
Q psy3968 182 AGNV-VHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYS-NAGTVEFLCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 182 ~G~v-v~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEfivd~dG~~~~iEvNpR~~g 259 (1080)
.+.. +.+..+.......+....+..|+ .++++..+++.+.+.++++++|++ |++|+||+++++| +||||||||++|
T Consensus 202 g~~~i~~i~~k~~~~~~~~ve~g~~~P~-~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~~g-~~liEIn~R~~G 279 (887)
T PRK02186 202 RGHQVLGITRKHLGPPPHFVEIGHDFPA-PLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDT-VVIIEINPRLAG 279 (887)
T ss_pred CcEEEEEEEeeecCCCCCeEEeccccCC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEECCC-EEEEEECCCCCC
Confidence 4433 23333322222223344456787 488899999999999999999996 9999999999765 999999999999
Q ss_pred Cc--cchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEc-----CCcce
Q psy3968 260 EH--TVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRS-----GEGMG 332 (1080)
Q Consensus 260 ~~--~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~-----~~~~g 332 (1080)
+. .+++.++|+|+++.+++.++|.++... .......++.+.+. +..|++..+.. +..++
T Consensus 280 ~~i~~li~~a~Gvd~~~~~i~~~lG~~~~~~-----~~~~~~~ai~~~~~---------~~~G~i~~i~~~~~~~~~~~~ 345 (887)
T PRK02186 280 GMIPVLLEEAFGVDLLDHVIDLHLGVAAFAD-----PTAKRYGAIRFVLP---------ARSGVLRGLLFLPDDIAARPE 345 (887)
T ss_pred ccHHHHHHHHHCcCHHHHHHHHhCCCCCCCC-----CCCCCeEEEEEEec---------CCCceEEecccchhhcccCCe
Confidence 63 467889999999999999999976421 11122334444332 22455443321 22344
Q ss_pred EEEcCCccCCCceeccc--cCCeeEEEEEecCChHHHHHHHHHHhhccEEc
Q psy3968 333 IRLDGASAFAGAIISPY--YDSLLVKVIAHAADLQSSCAKMNRALREFRVR 381 (1080)
Q Consensus 333 vr~d~~~~~~G~~i~~~--~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~ 381 (1080)
+++.. ...+|+.+++. +.+++|+|+++|+|++++.+++.++.+.++|+
T Consensus 346 ~~~~~-~~~~G~~v~~~~~~~~~~g~vi~~g~~~~e~~~~~~~~~~~l~~~ 395 (887)
T PRK02186 346 LRFHP-LKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGLSID 395 (887)
T ss_pred EEEEE-ecCCCCEecCCCCCCCccEEEEEEcCCHHHHHHHHHHHHhcCEEE
Confidence 44333 35688887554 44699999999999999999999999999874
No 54
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-30 Score=288.98 Aligned_cols=349 Identities=21% Similarity=0.276 Sum_probs=266.2
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCC-cccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCC
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYG-FLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPIT 103 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g-~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~ 103 (1080)
.|.+.|+++|++.++|.++.|.+ +|. ..+.+.+++.||+++||+.+++++..+|..+|++++++|||++.| ..++
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE~pL~--~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~f~ 125 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPEAPLV--AGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EVFT 125 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCcHHHh--hhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cccC
Confidence 57899999999999999999998 555 678899999999999999999999999999999999999999988 6788
Q ss_pred CHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCC--cEEEeeccCCCcEEEEEEEEec
Q psy3968 104 TTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNG--AMFIEKFIERPRHIEVQLLGDK 181 (1080)
Q Consensus 104 s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~--~vlVEeyI~G~~ei~v~vl~d~ 181 (1080)
+.+++.+++++.+.|+||||....+|+||.++.+.++..++++.+... ..||+. .++||||++| .|+|++++.|+
T Consensus 126 ~~e~a~ayi~~~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~--~~fg~~g~~VVIEEfL~G-eE~S~~a~~DG 202 (428)
T COG0151 126 DPEEAKAYIDEKGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEG--NAFGSAGARVVIEEFLDG-EEFSLQAFVDG 202 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhh--ccccCCCCcEEEEecccc-eEEEEEEEEcC
Confidence 999999999999999999999999999999999999999998887763 345533 5999999999 89999999996
Q ss_pred CCcEEEEEeeeccc------cccccEEEEEcCCCCCCHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEcCCCCEE
Q psy3968 182 AGNVVHLYERDCSV------QRRHQKVVEIAPAPHLDINVRNKMT-DLAVKLAKHV-----GYSNAGTVEFLCDESGQFY 249 (1080)
Q Consensus 182 ~G~vv~l~~r~~~~------~~~~~~~~~~~Pa~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEfivd~dG~~~ 249 (1080)
+..+.....+|... ..+..-.+.++|+|.++++..+++. ++....++.+ .|+|.....|+++++| |+
T Consensus 203 ~~v~p~p~aQDhKra~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~G-Pk 281 (428)
T COG0151 203 KTVIPMPTAQDHKRAYDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADG-PK 281 (428)
T ss_pred CeEEECccccccccccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCC-cE
Confidence 63322222222111 1112233558899999998776665 5555544444 4679999999999999 99
Q ss_pred EEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCcccc-ccCeEEEEeeeccCCCCCCCCCCCCceEEEEc
Q psy3968 250 FIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKI-SPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRS 327 (1080)
Q Consensus 250 ~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i-~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~ 327 (1080)
+||.|.|++. +.+.+......||++.++.++.|. |.+......+- ..-+..+...-||.+|..+-. |.....
T Consensus 282 ViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~-L~~~~~~~~~~~a~v~vvlA~~GYP~~~~kG~~-----I~~~~~ 355 (428)
T COG0151 282 VIEFNARFGDPETQVVLPLLESDLVELLLAAVDGK-LDEVEILFWDKGAAVGVVLAAEGYPGDPEKGDV-----ITGDEE 355 (428)
T ss_pred EEEEecccCChhHHHHHHhccccHHHHHHHHHhCC-ccccchhhccCCceEEEEEecCCCCCCCCCCCE-----EecChh
Confidence 9999999999 666666667889999999999996 44322222111 223455566667777654421 221110
Q ss_pred CCcceEEEcC-Cc-cC-CCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 328 GEGMGIRLDG-AS-AF-AGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 328 ~~~~gvr~d~-~~-~~-~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
....+..+-. +. .. .|..++.+ +|+-.|++.|+|.++|+++++++++.+++.|. ++||.+
T Consensus 356 ~~~~~~~vf~Agv~~~~~~~lvt~G--gRvL~v~~~g~t~~eA~~~ay~~~~~i~~~g~~yRkDIG~ 420 (428)
T COG0151 356 AEEEGAKVFHAGVKLDDGGQLVTSG--GRVLAVVGTGDTLEEAQEKAYEALEKIHFDGLFYRKDIGS 420 (428)
T ss_pred hcccCcEEEEeeEeccCCceEEecC--CeEEEEEecCCCHHHHHHHHHHHHhhcCCCCceeecccch
Confidence 0111111111 11 12 23577777 89999999999999999999999999999997 899886
No 55
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.98 E-value=1.1e-33 Score=339.40 Aligned_cols=182 Identities=47% Similarity=0.782 Sum_probs=162.9
Q ss_pred ccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccc
Q psy3968 804 NKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPF 883 (1080)
Q Consensus 804 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~ 883 (1080)
.|+|+|+||||||||||++++||++.++.++++.+++. |+|+||+|||+||++++|++.++||++.-.+.......++
T Consensus 2 ~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~--G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~l 79 (593)
T PRK14040 2 SKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKV--GYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQ 79 (593)
T ss_pred CCccEEEECCcccccccccccccCHHHHHHHHHHHHHc--CCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeE
Confidence 46799999999999999999999999999999999987 8999999999999999999999999853222222222211
Q ss_pred cceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEe
Q psy3968 884 QMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963 (1080)
Q Consensus 884 q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~ 963 (1080)
|
T Consensus 80 q------------------------------------------------------------------------------- 80 (593)
T PRK14040 80 Q------------------------------------------------------------------------------- 80 (593)
T ss_pred E-------------------------------------------------------------------------------
Confidence 1
Q ss_pred EeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCC
Q psy3968 964 SIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSK 1043 (1080)
Q Consensus 964 ~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1080)
...++.+++++.+||+++++.++++|.++|||++||||+|||++||+.+++++|+.|+++|++||||.+
T Consensus 81 -----ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~------ 149 (593)
T PRK14040 81 -----MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTS------ 149 (593)
T ss_pred -----EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeC------
Confidence 345667789999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1044 KKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
|.||++||++++++++++|||+||||| +|+++|.
T Consensus 150 p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~ 184 (593)
T PRK14040 150 PVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPY 184 (593)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence 589999999999999999999999999 9999995
No 56
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.98 E-value=2.2e-30 Score=335.50 Aligned_cols=357 Identities=20% Similarity=0.308 Sum_probs=270.3
Q ss_pred chhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccc-cc--HHH--HHHHHHcCCcEeCCcHHHHHHhc
Q psy3968 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLS-ER--SDF--AQAVLDAGIRFIGPSPYVVQQMG 78 (1080)
Q Consensus 4 ~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~ls-E~--~~~--a~~l~~~gi~~iGps~eai~~~~ 78 (1080)
+..+||+.|..+ ++.+.+.++++++++|+|+|+.|... .+ ..+ ...+++.|++++|+++++++.+.
T Consensus 57 ~~~~aD~~y~~p---------~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~ 127 (1066)
T PRK05294 57 DPEMADATYIEP---------ITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAE 127 (1066)
T ss_pred CcccCCEEEECC---------CCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhc
Confidence 456788888752 35789999999999999999876321 11 112 22577899999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN 158 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~ 158 (1080)
||..++++|+++|+|+|++ ..+++.+++.++++++|||+||||+.|.||+|+++|++.+||.+++++....+ ..
T Consensus 128 DK~~~k~~l~~~Gipvp~~--~~v~s~~e~~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~ 201 (1066)
T PRK05294 128 DRELFKEAMKKIGLPVPRS--GIAHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PV 201 (1066)
T ss_pred CHHHHHHHHHHCCcCCCCe--eeeCCHHHHHHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CC
Confidence 9999999999999999998 57899999999999999999999999999999999999999999888654321 24
Q ss_pred CcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecc--ccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ce
Q psy3968 159 GAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCS--VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYS-NA 235 (1080)
Q Consensus 159 ~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~--~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G~ 235 (1080)
++++||+||+|.+|+++.++.|++|+++.+...+.. ...+.......+|+..++++..+++++.+.+++++||+. |.
T Consensus 202 ~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~~~~e~~dp~gih~g~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~ 281 (1066)
T PRK05294 202 TEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGG 281 (1066)
T ss_pred CeEEEEEcccCceEEEEEEEEcCCCCEEEEeeeeeccccceecCCeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCc
Confidence 579999999998899999999999988776332110 001123345567886789999999999999999999999 99
Q ss_pred EEEEEEEcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCC
Q psy3968 236 GTVEFLCDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKN 314 (1080)
Q Consensus 236 ~~vEfivd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~ 314 (1080)
+++||++++ +|++||+|||||++++..+++.++|+|+.+..+++++|.++.++.-. ..|. ....
T Consensus 282 ~~vef~~~~~~g~~~viEiNPR~~~s~~~~s~~tG~pl~~~~~~~~lG~~l~~m~n~-----~~g~----------~~~~ 346 (1066)
T PRK05294 282 CNVQFALNPKDGRYIVIEMNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIKND-----ITGK----------TPAS 346 (1066)
T ss_pred eEEEEEEECCCCcEEEEEeecCCCcceeeeeHhhCCCHHHHHHHHHcCCChHHhcCc-----ccCC----------Cccc
Confidence 999999995 67899999999999988888889999999999999999987543210 0010 0012
Q ss_pred CCCCCCceEEEEcCCcceEEEcCCccCCCceecccc-CCeeEEEEEecCChHHHHHHHHHHhhccEEcccc------cCH
Q psy3968 315 FQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYY-DSLLVKVIAHAADLQSSCAKMNRALREFRVRGVK------TNI 387 (1080)
Q Consensus 315 f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~-ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~------tni 387 (1080)
|.|....+... .|. ..+. .|.+....++- -..+|+|++.|+|+++|.+++.|.++. ...|+. .+.
T Consensus 347 ~~p~~~~v~~k-~p~---~~~~---~y~k~~~~~g~~mrk~G~v~~~g~~~e~~~~k~~~~~~~-~~~~~~~~~~~~~~~ 418 (1066)
T PRK05294 347 FEPSLDYVVTK-IPR---FAFE---KFPGADRRLGTQMKSVGEVMAIGRTFEESLQKALRSLEI-GVTGLDEDLFEEESL 418 (1066)
T ss_pred ccccCCeEEEE-ccC---Cccc---cccCCCCCccceecccceEEEEcCCHHHHHHHHHHhcCC-CCCCCCccccccCCH
Confidence 33444332222 221 1121 23333322220 025999999999999999999999954 445542 234
Q ss_pred HHHHHhccccc
Q psy3968 388 PFLLNVLTNQK 398 (1080)
Q Consensus 388 ~~l~~il~~~~ 398 (1080)
+-+.+.|.||.
T Consensus 419 ~~~~~~l~~~~ 429 (1066)
T PRK05294 419 EELREELKEPT 429 (1066)
T ss_pred HHHHhhcCCCC
Confidence 56777778775
No 57
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.98 E-value=1.3e-30 Score=337.49 Aligned_cols=299 Identities=24% Similarity=0.372 Sum_probs=244.0
Q ss_pred CHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCH
Q psy3968 26 NIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTT 105 (1080)
Q Consensus 26 d~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ 105 (1080)
+.+.++++++++++|+|++.+|.... ..++..+++.|++++|++++++.++.||..++++|+++|||+|++ ..+.+.
T Consensus 617 ~~e~v~~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~--~~~~s~ 693 (1066)
T PRK05294 617 TLEDVLEIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPN--GTATSV 693 (1066)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCe--EEECCH
Confidence 58999999999999999997763332 357788999999999999999999999999999999999999998 568899
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcE
Q psy3968 106 EEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV 185 (1080)
Q Consensus 106 ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v 185 (1080)
+++.+++++++||+||||++++||+|+.+|++.+||.++++.+... ..+.+++||+||+|.+|+++++++++++.+
T Consensus 694 ee~~~~~~~igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~----s~~~~vlIEefI~G~~E~sV~~v~dg~~v~ 769 (1066)
T PRK05294 694 EEALEVAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKV----SPDHPVLIDKFLEGAIEVDVDAICDGEDVL 769 (1066)
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh----CCCCcEEEEecCCCCEEEEEEEEecCCeEE
Confidence 9999999999999999999999999999999999999999887643 235689999999996699999998765322
Q ss_pred EE-EEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccch
Q psy3968 186 VH-LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVT 264 (1080)
Q Consensus 186 v~-l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~ 264 (1080)
+. +.++......+........|+..++++..+++.+++.+++++||+.|++++||+++ +|++|++|||||++++.+++
T Consensus 770 i~~i~e~i~~~gv~~Gds~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~-~~~~yViEiNpR~s~t~~~~ 848 (1066)
T PRK05294 770 IGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVK-DDEVYVIEVNPRASRTVPFV 848 (1066)
T ss_pred EeeeEEeeeeccccCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEE-CCeEEEEEEecCCCccHHHH
Confidence 21 12211111111122334556667899999999999999999999999999999998 45699999999999988888
Q ss_pred hcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEE
Q psy3968 265 EEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIR 334 (1080)
Q Consensus 265 e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr 334 (1080)
..++|+|+.+..+++++|.+++++++.. ...+..+++.+++|+.....+..|..|. ++.+.+++.|+.
T Consensus 849 s~atGi~~~~~~~~~~lG~~l~~~~~~~-~~~~~~~~vk~p~fs~~~~~~~~~~lg~-~m~stge~~~~~ 916 (1066)
T PRK05294 849 SKATGVPLAKIAARVMLGKKLAELGYTK-GLIPPYVAVKEAVFPFNKFPGVDPLLGP-EMKSTGEVMGID 916 (1066)
T ss_pred HHHhCccHHHHHHHHHcCCChhhcCCCc-cCCCCceEEEeccCChhhccCCCCccCc-eeeecCceeecC
Confidence 8899999999999999999998776543 2223678999999988877777776773 566655554443
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.98 E-value=3.8e-30 Score=332.13 Aligned_cols=352 Identities=22% Similarity=0.330 Sum_probs=268.3
Q ss_pred hccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccc-ccHH--H--HHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 6 QKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLS-ERSD--F--AQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 6 ~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~ls-E~~~--~--a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
.+||..|.. .++.+.+.++++++++|+|+|..|... .+.. + ...+++.|++++|++++++..+.||
T Consensus 59 ~~ad~~y~e---------p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK 129 (1068)
T PRK12815 59 APADTVYFE---------PLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDR 129 (1068)
T ss_pred ccCCeeEEC---------CCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCH
Confidence 356666543 235789999999999999999876322 1111 1 1256778999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++|+++|||+|++ ..+++.+++.++++++|||+||||+.|.||+|+.+|++.+||.++++.+...+ ...+
T Consensus 130 ~~~k~~l~~~GIpvp~~--~~v~s~ee~~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~ 203 (1068)
T PRK12815 130 ERFRALMKELGEPVPES--EIVTSVEEALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQ 203 (1068)
T ss_pred HHHHHHHHHcCcCCCCc--eeeCCHHHHHHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCe
Confidence 99999999999999998 57899999999999999999999999999999999999999999997765431 1358
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccc---cccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQR---RHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT 237 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~---~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~ 237 (1080)
++||+||+|.+|+++.+++|.+|+++.+...+ .... ........+|+..++++..+++++.+.+++++||+.|.++
T Consensus 204 vLVEe~I~G~~E~sv~v~rD~~g~~~~~~~~e-~~~p~gi~tG~s~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~ 282 (1068)
T PRK12815 204 CLLEESIAGWKEIEYEVMRDRNGNCITVCNME-NIDPVGIHTGDSIVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCN 282 (1068)
T ss_pred EEEEEccCCCeEEEEEEEEcCCCCEEEEEece-ecccccccCCceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceE
Confidence 99999999988999999999888887653221 1111 1123455678867899999999999999999999999999
Q ss_pred EEEEEcCC-CCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCC
Q psy3968 238 VEFLCDES-GQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQ 316 (1080)
Q Consensus 238 vEfivd~d-G~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~ 316 (1080)
+||+++++ |++|++|||||++++..++..++|+++.+..+++++|.+++++...- .|.. ...|.
T Consensus 283 vef~l~~~~g~~~ViEINPR~~~s~~l~~~atG~pl~~~~~~~alG~~l~ei~~~i-----~g~~----------~a~~e 347 (1068)
T PRK12815 283 IQFALDPKSKQYYLIEVNPRVSRSSALASKATGYPIAKIAAKLAVGYTLNELKNPV-----TGLT----------YASFE 347 (1068)
T ss_pred EEEEEECCCCcEEEEEEecCcccchhhhhHhhCCcHHHHHHHHHcCCChHHhcCCc-----cCCc----------ccccC
Confidence 99999975 78999999999999988888899999999999999999987643211 1110 01233
Q ss_pred CCCCceEEEEcCCcceEEEcCCccCCCceeccccCCee---EEEEEecCChHHHHHHHHHHhhccEEccccc-------C
Q psy3968 317 PDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLL---VKVIAHAADLQSSCAKMNRALREFRVRGVKT-------N 386 (1080)
Q Consensus 317 p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l---~~Via~G~t~~eA~~~a~ral~~i~I~Gv~t-------n 386 (1080)
|....+. ...|. +.. +.|.+.....+ ..+ |+|++.|+|.++|..++.+++.. ...|+.. +
T Consensus 348 p~~d~~~-~k~p~-----~~f-~~y~~~~~~~g--~kmks~G~v~~ig~~~eea~~ka~~~~~~-~~~~~~~~~~~~~~~ 417 (1068)
T PRK12815 348 PALDYVV-VKFPR-----WPF-DKFGYADRTLG--TQMKATGEVMAIGRNFESAFQKALRSLEI-KRNGLSLPIELSGKS 417 (1068)
T ss_pred CccceEE-EEecc-----Ccc-ccccCcccccc--ceecccceEEEecCCHHHHHHHHHHhhcC-CCCCCCCccccccCC
Confidence 4444331 22221 221 22444333333 456 99999999999999999999954 4445421 2
Q ss_pred HHHHHHhccccc
Q psy3968 387 IPFLLNVLTNQK 398 (1080)
Q Consensus 387 i~~l~~il~~~~ 398 (1080)
-+-+.+.|.+|.
T Consensus 418 ~~~~~~~l~~~~ 429 (1068)
T PRK12815 418 DEELLQDLRHPD 429 (1068)
T ss_pred HHHHHHHhccCC
Confidence 345677777764
No 59
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.98 E-value=2.4e-30 Score=333.90 Aligned_cols=300 Identities=24% Similarity=0.388 Sum_probs=245.3
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCC
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITT 104 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s 104 (1080)
++.+.++++++++++|+|++++|... ...++..|++.|++++|++++++..+.||..++++|+++|||+|++ ..+++
T Consensus 616 ~~~e~vl~i~~~e~idgVI~~~gg~~-~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~--~~v~s 692 (1050)
T TIGR01369 616 LTFEDVMNIIELEKPEGVIVQFGGQT-PLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATS 692 (1050)
T ss_pred CCHHHHHHHHhhcCCCEEEEccCcHh-HHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCe--EEECC
Confidence 45899999999999999999987443 2457788999999999999999999999999999999999999998 57899
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCc
Q psy3968 105 TEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGN 184 (1080)
Q Consensus 105 ~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~ 184 (1080)
.+++.+++++++||+||||+++.||+||.+|++.+||.++++++... ..+.+++||+||+|.+|++++++.++ |+
T Consensus 693 ~ee~~~~~~~igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~----s~~~~vlVeefI~~G~E~~Vd~l~d~-g~ 767 (1050)
T TIGR01369 693 VEEAVEFASEIGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEV----SPEHPVLIDKYLEDAVEVDVDAVSDG-EE 767 (1050)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHh----CCCCCEEEeecCCCCeEEEEEEEEeC-CE
Confidence 99999999999999999999999999999999999999999987653 23567999999994499999999985 44
Q ss_pred EEEE--EeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCcc
Q psy3968 185 VVHL--YERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHT 262 (1080)
Q Consensus 185 vv~l--~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~ 262 (1080)
++.. .++......+........|+..++++..+++.+++.+++++||++|++|+||++++ |++|+||+|||++++.+
T Consensus 768 v~i~~i~e~~~~~gv~sGds~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~-~~~yvIEvNpR~s~t~p 846 (1050)
T TIGR01369 768 VLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD-GEVYVIEVNPRASRTVP 846 (1050)
T ss_pred EEEEEEEEeecccCCcCCCceEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC-CeEEEEEEeCCCCchHH
Confidence 4432 22211111112233445677678999999999999999999999999999999985 56999999999999888
Q ss_pred chhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEE
Q psy3968 263 VTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRL 335 (1080)
Q Consensus 263 ~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~ 335 (1080)
+++.++|+|+++.++++++|.+++++.... ......+++...+++.....+..|..|. ++.+.+++.|+..
T Consensus 847 ~vs~atGi~l~~~~~~~~lG~~l~~~~~~~-~~~~~~~~vK~p~f~~~~~~~~d~~lg~-emkstge~~~~g~ 917 (1050)
T TIGR01369 847 FVSKATGVPLIKLATRVMLGKKLEELGVGK-EKEPKYVAVKEPVFSFSKLAGVDPVLGP-EMKSTGEVMGIGR 917 (1050)
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcccccccc-CCCCCeEEEEeccCChhhcCCCCCcCCc-eeEecCceEecCC
Confidence 888999999999999999999998765322 2334678999998887776666666663 5566555444433
No 60
>PRK07206 hypothetical protein; Provisional
Probab=99.98 E-value=2.8e-30 Score=305.01 Aligned_cols=331 Identities=15% Similarity=0.152 Sum_probs=237.2
Q ss_pred CCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCC
Q psy3968 24 YLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPIT 103 (1080)
Q Consensus 24 yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~ 103 (1080)
+.|.+.++++++++++|+|+|+.+... ...+...+..|+++ |++++++..++||..|+++|+++|||+|++ ..+.
T Consensus 56 ~~~~~~l~~~~~~~~~d~vi~~~e~~~--~~~a~l~~~l~l~~-~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~--~~~~ 130 (416)
T PRK07206 56 NGDIDDLVEFLRKLGPEAIIAGAESGV--ELADRLAEILTPQY-SNDPALSSARRNKAEMINALAEAGLPAARQ--INTA 130 (416)
T ss_pred CCCHHHHHHHHHHcCCCEEEECCCccH--HHHHHHHHhcCCCc-CCChhhHHHhhCHHHHHHHHHHcCCCcccE--EecC
Confidence 367889999999999999999876432 22233344466653 789999999999999999999999999998 5688
Q ss_pred CHHHHHHHHHHhCC---cEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEE
Q psy3968 104 TTEEAMEFCLKYGL---PVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLL 178 (1080)
Q Consensus 104 s~ee~~~~~~~igf---PvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl 178 (1080)
+.+++.+++++++| |+||||..|+||+||++|+|.+|++++++++.... ..++ +..+++|+||+| .|++++++
T Consensus 131 ~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~~~lvEe~i~G-~E~sv~~~ 208 (416)
T PRK07206 131 DWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKA-NKLGLVNETVLVQEYLIG-TEYVVNFV 208 (416)
T ss_pred CHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhcc-ccCCCCCCeEEEEEcccc-EEEEEEEE
Confidence 99999999999988 99999999999999999999999999998876421 1111 358999999999 89999998
Q ss_pred EecCCcEEE--EEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-ceEEEEEEEcCCCCEEEEEEec
Q psy3968 179 GDKAGNVVH--LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYS-NAGTVEFLCDESGQFYFIEVNA 255 (1080)
Q Consensus 179 ~d~~G~vv~--l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G~~~vEfivd~dG~~~~iEvNp 255 (1080)
.. +|+++. +..+....................+.+..+++.+.+.++++++|+. |++|+||+++++| +++|||||
T Consensus 209 ~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~g-~~liEin~ 286 (416)
T PRK07206 209 SL-DGNHLVTEIVRYHKTSLNSGSTVYDYDEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTADG-PRLIEIGA 286 (416)
T ss_pred EE-CCEEEEEEeEEeeecccCCCCceecccccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCCC-CEEEEECC
Confidence 64 455443 2222111111111111111111135667889999999999999995 9999999999877 89999999
Q ss_pred cCCCC--ccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEE-------E
Q psy3968 256 RLQVE--HTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVF-------R 326 (1080)
Q Consensus 256 R~~g~--~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~-------~ 326 (1080)
|++|+ +.+++.++|+|+++++++.++|.+... ..........+++....+.+ |..|.+... .
T Consensus 287 R~~G~~~~~~~~~~~G~d~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~G~~~~i~g~~~~~~ 357 (416)
T PRK07206 287 RLDGGLHPDVARLATGDSQLDATVESLADPDVFR-ETLREGYRLKAHVFNVFLIS--------PAAGVFSNVEFLEEIQK 357 (416)
T ss_pred ccCCCCccchhhhhcCcCHHHHHHHHHhCchhhc-cccCCCcChhhceEEEEEec--------CCCceEeCCccHHHHHh
Confidence 99985 456789999999999999999986421 11111112222322222221 223443322 2
Q ss_pred cCCcceEEEcCCccCCCceeccccC--CeeEEEEEecCChHHHHHHHHHHh
Q psy3968 327 SGEGMGIRLDGASAFAGAIISPYYD--SLLVKVIAHAADLQSSCAKMNRAL 375 (1080)
Q Consensus 327 ~~~~~gvr~d~~~~~~G~~i~~~~d--s~l~~Via~G~t~~eA~~~a~ral 375 (1080)
.|+...+.+ ....|+.+.+.-| +++|++++.|+|.+++.+..+++-
T Consensus 358 ~p~v~~~~~---~~~~G~~v~~~~d~~~~~g~v~~~~~~~~~~~~~~~~~~ 405 (416)
T PRK07206 358 LPSFKKSHI---YVKEGDYVPQTVDLFSQPGTVYLVHKDKEQLWQDYEKIR 405 (416)
T ss_pred CCchhheEE---ecCCCCCccCceecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 333322222 3467887765533 489999999999999988876654
No 61
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.98 E-value=4.8e-30 Score=331.16 Aligned_cols=325 Identities=23% Similarity=0.364 Sum_probs=255.0
Q ss_pred cchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHH
Q psy3968 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVA 82 (1080)
Q Consensus 3 ~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~ 82 (1080)
.+...||+.|.. .++.+.++++++++++|+|+|++|... ...++..+++.|++++|++++++..+.||..
T Consensus 604 ~~~~~aD~~y~e---------p~~~e~vl~I~~~e~~dgVI~~~g~~~-~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~ 673 (1068)
T PRK12815 604 TDYDTADRLYFE---------PLTLEDVLNVAEAENIKGVIVQFGGQT-AINLAKGLEEAGLTILGTSPDTIDRLEDRDR 673 (1068)
T ss_pred cccccCceEEEc---------cCCHHHHHHHHhhcCCCEEEEecCcHH-HHHHHHHHHHCCCeEECCcHHHHHHHcCHHH
Confidence 344567776653 235799999999999999999877433 2456788889999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEE
Q psy3968 83 ARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMF 162 (1080)
Q Consensus 83 ~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vl 162 (1080)
++++|+++|||+|++ ..+.+.+++.++++++|||+|+||+++.||+|+++|++.+||.++++.+. ..+.+++
T Consensus 674 f~~ll~~~GIp~P~~--~~~~s~ee~~~~~~~igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vl 745 (1068)
T PRK12815 674 FYQLLDELGLPHVPG--LTATDEEEAFAFAKRIGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPIL 745 (1068)
T ss_pred HHHHHHHcCcCCCCe--EEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEE
Confidence 999999999999998 56899999999999999999999999999999999999999999988762 2356899
Q ss_pred EeeccCCCcEEEEEEEEecCCcEEE-EEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 163 IEKFIERPRHIEVQLLGDKAGNVVH-LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 163 VEeyI~G~~ei~v~vl~d~~G~vv~-l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
+|+||+| .|++++++.|++...+. +.++......+........|+..++++..+++.+.+.+++++||+.|++++||+
T Consensus 746 IeefI~G-~E~~Vd~i~dg~~v~i~~i~e~~e~~gv~sGds~~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~ 824 (1068)
T PRK12815 746 IDQFIDG-KEYEVDAISDGEDVTIPGIIEHIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFV 824 (1068)
T ss_pred EEEeecC-ceEEEEEEEcCCceEEeeEEEEeeccCCcCCCeeEEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEE
Confidence 9999999 79999999986543321 222111111112233445666679999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccc-cccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEK-ISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~-i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++ |++|+||||||++++.+++..++|+|+++.++++++|.++.++.+.... +....+++...+++.....+..|..|
T Consensus 825 v~~-~~~yviEiNpR~s~t~~~~skatGv~l~~~~~~~~lG~~l~~~~~~~~~~~~~~~~~vk~p~f~f~~~~~~~~~lg 903 (1068)
T PRK12815 825 LAN-DEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKSLAELGYPNGLWPGSPFIHVKMPVFSYLKYPGVDNTLG 903 (1068)
T ss_pred EEC-CcEEEEEEeCCCCccHHHHHHHHCCCHHHHHHHHHcCCChhhcccccccCCCCCeEEEEeccCChhHcccCCCccC
Confidence 985 5699999999999988888889999999999999999999876543222 22245566666665444333322222
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHh
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRAL 375 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral 375 (1080)
. ++ ...|.+++.|.|+++|..|+..+.
T Consensus 904 ~-~m---------------------------~stGe~~~~~~~~~~a~~k~~~~~ 930 (1068)
T PRK12815 904 P-EM---------------------------KSTGEVMGIDKDLEEALYKGYEAS 930 (1068)
T ss_pred C-cc---------------------------eEcceeEeccCCHHHHHHHHHHhc
Confidence 1 11 135678999999999988876665
No 62
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.97 E-value=2e-29 Score=281.07 Aligned_cols=334 Identities=21% Similarity=0.334 Sum_probs=263.2
Q ss_pred hccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccc-ccHH--HHH--HHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 6 QKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLS-ERSD--FAQ--AVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 6 ~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~ls-E~~~--~a~--~l~~~gi~~iGps~eai~~~~DK 80 (1080)
.+||+.|+.+ ...+.+..+++++++|+|+|..|... .+.. +.+ .|++.|++++|.+.++++.+.||
T Consensus 47 e~AD~~y~eP---------~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr 117 (400)
T COG0458 47 ELADKVYIEP---------ITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDK 117 (400)
T ss_pred hhcceeeeec---------CcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhH
Confidence 5789999873 33789999999999999999987432 1111 111 34456999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+++++++++|+|+| + ...++.+++.++.+.+|||+||||+.+.||.|..+++|.+||.+........+ +..+
T Consensus 118 ~~fke~m~eigi~~P-~--~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~ 190 (400)
T COG0458 118 KLFKEAMREIGIPVP-S--RIAHSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEE 190 (400)
T ss_pred HHHHHHHHHcCCCCC-c--cccccHHHHhhhHhhcCCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccC----cccc
Confidence 999999999999999 3 46889999999999999999999999999999999999999999887765532 2458
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeec--cccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDC--SVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTV 238 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~--~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 238 (1080)
+++|++|.|.+|+++.+++|.+++++.+....- ...-+....+..+|++.+++...+.++..+.++++.+|..|.+++
T Consensus 191 vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~ni 270 (400)
T COG0458 191 VLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNI 270 (400)
T ss_pred ceeeeeecCceEEEEEEEEeCCCCEEEEEeCCccccccccccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCce
Confidence 999999999999999999999999888743221 233345677889999999999999999999999999999999999
Q ss_pred EEEEcCC-CCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCC
Q psy3968 239 EFLCDES-GQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQP 317 (1080)
Q Consensus 239 Efivd~d-G~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p 317 (1080)
+|.++++ |++|+||||||++++..+.+.++|..+......+|.|..++++.-. +.-.+ ...|.|
T Consensus 271 Q~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei~n~---it~~t------------~a~feP 335 (400)
T COG0458 271 QFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIRND---ITGRT------------PASFEP 335 (400)
T ss_pred eEEEcCCCceEEEEEecCCcCcchhhhhhccCChHHHHHHHhhcccCchhhcCc---ccccc------------ccccCC
Confidence 9999985 5899999999999999999999999999999999999988754311 11011 123556
Q ss_pred CCCceEEEEcCCcceEEEcCCccCCC-ceeccccCCeeEEEEEecCChHHHHHHHHHHhhc
Q psy3968 318 DTGRIEVFRSGEGMGIRLDGASAFAG-AIISPYYDSLLVKVIAHAADLQSSCAKMNRALRE 377 (1080)
Q Consensus 318 ~~G~i~~~~~~~~~gvr~d~~~~~~G-~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~ 377 (1080)
+...+... .| |++......+ ....+.+. -.|-|++.|+|++||+.||.|.|+.
T Consensus 336 sldyvv~k-~p-----r~~f~kf~~~~~~l~~~mk-s~gevm~igr~f~eal~ka~~~l~~ 389 (400)
T COG0458 336 SLDYVVTK-IP-----RFDFEKFPGADRRLGTQMK-SVGEVMAIGRTFEEALQKALRSLEI 389 (400)
T ss_pred ccceeeee-cC-----CCCcccccccccceeeeee-ccceEEEecchHHHHHHHHHHhhcc
Confidence 66543322 11 2222111111 12222222 5889999999999999999998854
No 63
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.97 E-value=2.3e-28 Score=279.43 Aligned_cols=259 Identities=19% Similarity=0.216 Sum_probs=208.4
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccc-ccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLS-ERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~ls-E~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++.+.||++|.++.. .+-..++.++++++++++|+|+|+.+... -.+...+.++..|+++++++++++.+++||
T Consensus 37 ~~~~~~~d~~~~~p~~----~~~~~~~~l~~~~~~~~id~ii~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK 112 (326)
T PRK12767 37 APALYFADKFYVVPKV----TDPNYIDRLLDICKKEKIDLLIPLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDK 112 (326)
T ss_pred chhhHhccCcEecCCC----CChhHHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcH
Confidence 5677889999988421 12223689999999999999999876322 123345667778999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHH--HHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAME--FCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN 158 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~--~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~ 158 (1080)
..++++|+++|+|+|++ ..+++.+++.+ +.+.++||+|+||..|+||+|++++++.+|+.++++..
T Consensus 113 ~~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~~---------- 180 (326)
T PRK12767 113 WLTYEFLKENGIPTPKS--YLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYV---------- 180 (326)
T ss_pred HHHHHHHHHcCCCCCCE--EcccCHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHhC----------
Confidence 99999999999999998 46788888877 55778999999999999999999999999999887642
Q ss_pred CcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Q psy3968 159 GAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTV 238 (1080)
Q Consensus 159 ~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 238 (1080)
.++++|+||+| +++++.++.+.+|+++.+..+................ . .+++.+.+.++++++|++|.+++
T Consensus 181 ~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~~~~~~~g~~~~~~~~----~---~~~i~~~~~~i~~~lg~~G~~~v 252 (326)
T PRK12767 181 PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRKRIEVRAGETSKGVTV----K---DPELFKLAERLAEALGARGPLNI 252 (326)
T ss_pred CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEeeeeeecCCceeEEEEc----C---CHHHHHHHHHHHHhcCCeeeEEE
Confidence 37999999999 8999999988778887765443211111111111111 1 25789999999999999999999
Q ss_pred EEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCC
Q psy3968 239 EFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLP 286 (1080)
Q Consensus 239 Efivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~ 286 (1080)
||++++ |++|+||+|||++|+..+ ...+|+|+++++++.++|++++
T Consensus 253 d~~~~~-g~~~viEiNpR~~g~~~~-~~~~G~n~~~~~~~~~~g~~~~ 298 (326)
T PRK12767 253 QCFVTD-GEPYLFEINPRFGGGYPL-SYMAGANEPDWIIRNLLGGENE 298 (326)
T ss_pred EEEEEC-CeEEEEEEeCCCCCcchh-hHhhCCCHHHHHHHHHcCCCCC
Confidence 999996 679999999999997665 4579999999999999999865
No 64
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.97 E-value=2.2e-31 Score=320.75 Aligned_cols=181 Identities=49% Similarity=0.822 Sum_probs=160.3
Q ss_pred cceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCcccccccc
Q psy3968 805 KSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQ 884 (1080)
Q Consensus 805 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q 884 (1080)
|++.|+||||||||||++++||++.++.++++.+++. |+++||+||+++|++++|+++++||+..-.+.-....+
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~--G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~--- 76 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKV--GFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNT--- 76 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHc--CCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCC---
Confidence 5689999999999999999999999999999999987 89999999999999999999999997421111110111
Q ss_pred ceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeE
Q psy3968 885 MLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKS 964 (1080)
Q Consensus 885 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~ 964 (1080)
T Consensus 77 -------------------------------------------------------------------------------- 76 (592)
T PRK09282 77 -------------------------------------------------------------------------------- 76 (592)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCC
Q psy3968 965 IDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKK 1044 (1080)
Q Consensus 965 ~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1080)
.....+++.+++.+.+||+++++.+.++|.++|+|++||||+|||++||+.+++++|+.|+++|++||||.+ |
T Consensus 77 -~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~------p 149 (592)
T PRK09282 77 -PLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTS------P 149 (592)
T ss_pred -EEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccC------C
Confidence 111345667889999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1045 KYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.||++||+++++++.++|||+||||| +|+++|.
T Consensus 150 ~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~ 183 (592)
T PRK09282 150 VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPY 183 (592)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHH
Confidence 89999999999999999999999999 9999995
No 65
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.96 E-value=7.3e-28 Score=279.42 Aligned_cols=247 Identities=20% Similarity=0.257 Sum_probs=199.0
Q ss_pred HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q psy3968 28 PEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEE 107 (1080)
Q Consensus 28 e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee 107 (1080)
.+++++.++.+..... -|++|+..++..|+..|++++||+++++.++.||..+|++++++|||+|++......+.++
T Consensus 94 ~~~~~~~~~~~~~~~~---~fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~ee 170 (493)
T PRK06524 94 PETLEFIKRRGPGGKA---CFVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDE 170 (493)
T ss_pred HHHHHHHHhhCCCCce---EEecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHH
Confidence 4556666665432111 1789999999999999999999999999999999999999999999999986433567777
Q ss_pred HHHHHHH--hCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcE
Q psy3968 108 AMEFCLK--YGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV 185 (1080)
Q Consensus 108 ~~~~~~~--igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v 185 (1080)
+...++. +|||+||||+.|++|+|+++|++.+|++++++.+. ++..++||+||.| +|++|+++.+.+|.+
T Consensus 171 l~~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~G-rEitVev~vd~dG~V 242 (493)
T PRK06524 171 LSALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIRN-VEVCIEACVTRHGTV 242 (493)
T ss_pred HHHHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccCc-EEEEEEEEEeCCCCE
Confidence 7777765 99999999999999999999999999998776643 3467999999999 999999999888876
Q ss_pred EEEE------eeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceEEEEEEEcC-CCCEEEEEEec
Q psy3968 186 VHLY------ERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV---GYSNAGTVEFLCDE-SGQFYFIEVNA 255 (1080)
Q Consensus 186 v~l~------~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al---g~~G~~~vEfivd~-dG~~~~iEvNp 255 (1080)
+... .++....+.+....+.+|+ .+++++.+++.+.|.+++++| |+.|.++|||+++. +|++||+||||
T Consensus 243 v~~~~~e~vg~~Ei~~yr~G~~~~~i~PA-~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddgevYfnEINP 321 (493)
T PRK06524 243 IGPAMTSLVGYPELTPYRGGWCGNDIWPG-ALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDADELYLGEVNP 321 (493)
T ss_pred EeccccccccceEEEEccCCeEEEEEccC-CCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCCeEEEEEEeC
Confidence 5421 1111111222223457788 599999999999999999998 89999999999986 58899999999
Q ss_pred cCCCCccchhccc----CCCHHHHHHHHHcCCCCC
Q psy3968 256 RLQVEHTVTEEIT----GVDLVQSQIRVAEGMTLP 286 (1080)
Q Consensus 256 R~~g~~~~~e~~t----Gvdl~~~~l~~alG~~l~ 286 (1080)
|++|+++++++++ +.+++..+++..+|.|..
T Consensus 322 R~~G~tpmt~~~s~Agad~p~fllh~~a~~~~p~~ 356 (493)
T PRK06524 322 RLSGASPMTNLTTEAYADMPLFLFHLLEYMDVDYE 356 (493)
T ss_pred CcccccccchhhhccCCChhHHHHHHHHHhCCCce
Confidence 9999888876633 455666777889998763
No 66
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.96 E-value=3.4e-28 Score=272.06 Aligned_cols=262 Identities=23% Similarity=0.327 Sum_probs=214.1
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeC-CcHHHHHHhcCH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIG-PSPYVVQQMGDK 80 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iG-ps~eai~~~~DK 80 (1080)
++....||+++..|. ..++| ++.++++|++++||+++|+..... .....+.+++.|+++.- ++.++++++.||
T Consensus 35 ~~~~~~aD~~~~eP~---~~~~y--v~~~l~~C~~~~Idv~~P~~~~~~-l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK 108 (329)
T PF15632_consen 35 APILYAADEAYLEPA---DGEEY--VDWCLDFCKEHGIDVFVPGRNREL-LAAHRDEFEALGVKLLTASSAETLELADDK 108 (329)
T ss_pred chHHhcCceeeecCC---CHHHH--HHHHHHHHHHhCCeEEEcCccHHH-HHHHHHHHHHhCCEEEecCCHHHHHHHhhH
Confidence 567789999999843 44567 779999999999999999987322 34456678889999987 889999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCc---EEEEeCCCCCCcCeEEEC-CHhHHHHHHH---------H
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLP---VIFKAAYGGGGRGMRVVR-KMEDVEENFQ---------R 147 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfP---vVVKP~~g~Gg~GV~iv~-s~eeL~~a~~---------~ 147 (1080)
..+.+.+++.|||+|++ +.+++.+++.++.+++++| ++|||+.|.||+|.++++ +.+++...+. .
T Consensus 109 ~~~y~~~~~~~ipvp~~--~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~ 186 (329)
T PF15632_consen 109 AAFYEFMEANGIPVPPY--WRVRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDE 186 (329)
T ss_pred HHHHHHHHhCCCCCCCE--EEeCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHH
Confidence 99999999999999999 6799999999999998887 999999999999999998 5566555443 1
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHH
Q psy3968 148 ASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLA 227 (1080)
Q Consensus 148 ~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~ 227 (1080)
+...-..+-.-.+++|++|++| .||||+++++. |+++....|... ...|.+ + ..+++.+.+.+++
T Consensus 187 ~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~--G~~q~l-~----------~~~~l~e~a~~l~ 251 (329)
T PF15632_consen 187 LLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL--GRRQVL-E----------NDEELIELARRLA 251 (329)
T ss_pred HHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec--CceeEE-E----------ECHHHHHHHHHHH
Confidence 1111010111358999999999 79999999985 888876666443 122221 1 2257899999999
Q ss_pred HHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCC
Q psy3968 228 KHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPE 287 (1080)
Q Consensus 228 ~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~ 287 (1080)
+.+|+.|.++|+|+.|.+|++++||||||++|+..++. .+|+|++.+.+..++|.+.++
T Consensus 252 ~~~~l~g~~NiQ~r~d~~g~p~LLEINpR~sGGi~~s~-~aGvNlp~la~~~~lG~~~~~ 310 (329)
T PF15632_consen 252 EAFGLDGLFNIQFRYDEDGNPKLLEINPRPSGGIGYSC-AAGVNLPYLAVKLALGEPIPP 310 (329)
T ss_pred HHhCCCceEEEEEEEcCCCCEEEEEeCCCCccchhhHh-hcCCChHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999888765 589999999999999998764
No 67
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.6e-27 Score=251.11 Aligned_cols=347 Identities=19% Similarity=0.242 Sum_probs=265.2
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
|+|..+.||.+|.+ +-+|.++|..+.+++++|.|+|-.+..+ ......+++.|+.++ |+..+.+++.|+
T Consensus 46 ~APAmqVAhrs~Vi--------~MlD~~al~avv~rekPd~IVpEiEAI~--td~L~elE~~G~~VV-P~ArAt~ltMnR 114 (394)
T COG0027 46 NAPAMQVAHRSYVI--------DMLDGDALRAVVEREKPDYIVPEIEAIA--TDALVELEEEGYTVV-PNARATKLTMNR 114 (394)
T ss_pred CChhhhhhhheeee--------eccCHHHHHHHHHhhCCCeeeehhhhhh--HHHHHHHHhCCceEc-cchHHHHhhhcH
Confidence 57888999999998 7899999999999999999999877544 444567888999987 999999999999
Q ss_pred HHHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCC
Q psy3968 81 VAARQAA-IDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNG 159 (1080)
Q Consensus 81 ~~~r~~l-~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~ 159 (1080)
...|+++ +++|+|+.+| +-+++.+++.++++.+||||++||..+++|+|-.+|+++++++++++.+.+.++ -+.+
T Consensus 115 egiRrlAAeeLglpTs~Y--~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R--~~~~ 190 (394)
T COG0027 115 EGIRRLAAEELGLPTSKY--RFADSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGR--GGSG 190 (394)
T ss_pred HHHHHHHHHHhCCCCccc--cccccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCC--CCCC
Confidence 9999987 5789999998 458999999999999999999999999999999999999999999999886543 3456
Q ss_pred cEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Q psy3968 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239 (1080)
Q Consensus 160 ~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 239 (1080)
.+++|+||+-..|+++-.++..+|.-.++ ..-.-.+.++.+.-..-|. .+++...++.+.++.++..+||-.|.+.||
T Consensus 191 RVIVE~fv~fd~EiTlLtvr~~~~~~~Fc-~PIGHrq~dgdY~ESWQP~-~mS~~al~~A~~IA~~vt~aLGG~GiFGVE 268 (394)
T COG0027 191 RVIVEEFVKFDFEITLLTVRAVDGTGSFC-APIGHRQEDGDYRESWQPQ-EMSEAALEEAQSIAKRVTDALGGRGLFGVE 268 (394)
T ss_pred cEEEEEEecceEEEEEEEEEEecCCCCcC-CCcccccCCCChhcccCcc-ccCHHHHHHHHHHHHHHHHhhcCccceeEE
Confidence 89999999976666665555444432211 0001122233333445576 699999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCC-
Q psy3968 240 FLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPD- 318 (1080)
Q Consensus 240 fivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~- 318 (1080)
+++..| +.||-|+.||+..+..+|-..-+++-++++++..+|.|++++... +.+....|.+.... ..|.
T Consensus 269 lfv~gD-eV~FsEVSPRPHDTGmVTLiSq~lsEF~LH~RAiLGLPi~~i~~~-------~P~AS~vI~~~~~~--~~~~f 338 (394)
T COG0027 269 LFVKGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAILGLPIPEIRQI-------SPAASAVILAQETS--QAPTF 338 (394)
T ss_pred EEEeCC-EEEEeecCCCCCCCceEEEEeccchHHHHHHHHHhCCCccceeee-------cccccceeeccccc--cCCch
Confidence 999865 599999999999988887777899999999999999999854321 22222233322211 1111
Q ss_pred CCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcc
Q psy3968 319 TGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG 382 (1080)
Q Consensus 319 ~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~G 382 (1080)
.|....+..|.. .+|+-. .-.+... .|+|-.++++++-++|+++++++...+.+.+
T Consensus 339 ~~l~~AL~~p~t-~vRlFG-----KP~~~~~--RRmGVALA~a~~Ve~Are~A~~aa~~i~v~~ 394 (394)
T COG0027 339 DGLAEALGVPDT-QVRLFG-----KPEADGG--RRLGVALATAESVEEARERARKAASAIEVKG 394 (394)
T ss_pred hhHHHHhcCCCc-eEEEec-----CCcccCC--ceeeEEEecCccHHHHHHHHHHHHhheecCC
Confidence 222233333322 245432 1111111 5899999999999999999999999988753
No 68
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=99.96 E-value=1.7e-30 Score=303.11 Aligned_cols=180 Identities=48% Similarity=0.794 Sum_probs=157.6
Q ss_pred ceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccc
Q psy3968 806 SLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQM 885 (1080)
Q Consensus 806 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~ 885 (1080)
+|.|+|||+||||||++++||++.++.++++.+++. |+++||+||+++|+++.|+++++||++.-.+......+
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~--Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~---- 75 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRM--GFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNT---- 75 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHc--CCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCC----
Confidence 378999999999999999999999999999988886 89999999999999999999999997532211110111
Q ss_pred eeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEe
Q psy3968 886 LLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965 (1080)
Q Consensus 886 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~ 965 (1080)
T Consensus 76 -------------------------------------------------------------------------------- 75 (467)
T PRK14041 76 -------------------------------------------------------------------------------- 75 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCC
Q psy3968 966 DASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKK 1045 (1080)
Q Consensus 966 ~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1080)
.+...+.+.+++.+.++++++++.|++.|.++|+|.++|||++||++||+.+++++|+.|++++++||||.+ |.
T Consensus 76 ~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~------p~ 149 (467)
T PRK14041 76 KIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVS------PV 149 (467)
T ss_pred EEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccC------CC
Confidence 011234556677788899999999999999999999999999999999999999999999999999999985 48
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1046 YDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1046 ~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
||++||+++|++++++|||+||||| +|+++|.
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~ 182 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKDMAGLLTPK 182 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCcCHH
Confidence 9999999999999999999999999 9999995
No 69
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=99.96 E-value=4.7e-30 Score=299.35 Aligned_cols=181 Identities=43% Similarity=0.736 Sum_probs=159.2
Q ss_pred cceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCcccccccc
Q psy3968 805 KSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQ 884 (1080)
Q Consensus 805 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q 884 (1080)
++|.|+|||+|||+||++++||++.++.++++.+++. |+++||+||++||++++|++.++||++.-.+......+
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~--Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~--- 76 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNA--GYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKT--- 76 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHc--CCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCC---
Confidence 4589999999999999999999999999999988886 89999999999999999999999997532111100111
Q ss_pred ceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeE
Q psy3968 885 MLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKS 964 (1080)
Q Consensus 885 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~ 964 (1080)
T Consensus 77 -------------------------------------------------------------------------------- 76 (448)
T PRK12331 77 -------------------------------------------------------------------------------- 76 (448)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCC
Q psy3968 965 IDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKK 1044 (1080)
Q Consensus 965 ~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1080)
.+...+.+.+++++-+||+++++.+++.|.++|+|+++|||++||++||+.+++++|+.|+++|++||||.+ |
T Consensus 77 -~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~------p 149 (448)
T PRK12331 77 -KLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTS------P 149 (448)
T ss_pred -EEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecC------C
Confidence 111235667788888999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1045 KYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.||++||+++|++++++|||+||||| +|+++|.
T Consensus 150 ~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~ 183 (448)
T PRK12331 150 VHTIDYFVKLAKEMQEMGADSICIKDMAGILTPY 183 (448)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 89999999999999999999999999 9999995
No 70
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.95 E-value=2.2e-29 Score=302.42 Aligned_cols=177 Identities=47% Similarity=0.801 Sum_probs=156.3
Q ss_pred eeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceec
Q psy3968 809 LMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLR 888 (1080)
Q Consensus 809 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~ 888 (1080)
|+||||||||||++++||++.++.++++.+++. |+++||+||++||++++|++.++||++.-.+......+
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~--Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~------- 71 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDV--GYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNT------- 71 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHc--CCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCC-------
Confidence 689999999999999999999999999988886 89999999999999999999999997532211111111
Q ss_pred cccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 889 GANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
.+.
T Consensus 72 -----------------------------------------------------------------------------~l~ 74 (582)
T TIGR01108 72 -----------------------------------------------------------------------------PLQ 74 (582)
T ss_pred -----------------------------------------------------------------------------EEE
Confidence 111
Q ss_pred eeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCH
Q psy3968 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDL 1048 (1080)
Q Consensus 969 ~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1080)
..+++.+++.+.+||+++++.+.++|.++|+|.+||||+|||++||+.+++++|++|++++++||||.+ |.||+
T Consensus 75 ~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~------p~~~~ 148 (582)
T TIGR01108 75 MLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTS------PVHTL 148 (582)
T ss_pred EEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccC------CCCCH
Confidence 335566788899999999999999999999999999999999999999999999999999999999985 58999
Q ss_pred HHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1049 KYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1049 ~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+||++++++++++|||+||||| +|+++|.
T Consensus 149 ~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~ 178 (582)
T TIGR01108 149 ETYLDLAEELLEMGVDSICIKDMAGILTPK 178 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence 9999999999999999999999 9999995
No 71
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.95 E-value=2.2e-26 Score=259.11 Aligned_cols=236 Identities=19% Similarity=0.269 Sum_probs=185.2
Q ss_pred HHHHHHcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q psy3968 31 IRVAKENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAM 109 (1080)
Q Consensus 31 i~~a~~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~ 109 (1080)
+....+.++|.++++. |...|+..++..|+..|++++|++++++.++.||..+|++++++|||+|++. .+.+. .
T Consensus 49 ~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~--~~~~~---~ 123 (296)
T PRK14569 49 VAKLLELKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK--FLTDK---L 123 (296)
T ss_pred HHHhhccCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeE--EEchh---h
Confidence 3444456899999974 6677889999999999999999999999999999999999999999999973 23332 1
Q ss_pred HHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEE
Q psy3968 110 EFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLY 189 (1080)
Q Consensus 110 ~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~ 189 (1080)
...+.++||+||||+.|++|.|+++|++.+||.++++.+.. .++++||+||+| +|+++.++.+.....+.+.
T Consensus 124 ~~~~~~~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~E~tv~vl~~~~~~~~~i~ 195 (296)
T PRK14569 124 VAEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-KEITVAIVNDEVYSSVWIE 195 (296)
T ss_pred hhHhhcCCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-EEEEEEEECCcCcceEEEe
Confidence 23567899999999999999999999999999999987642 247999999999 9999999865432222221
Q ss_pred eee--ccc-cccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCC----cc
Q psy3968 190 ERD--CSV-QRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVE----HT 262 (1080)
Q Consensus 190 ~r~--~~~-~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~----~~ 262 (1080)
... ... ...........|+ .++++..+++.+.+.+++++||++|.+++||+++++|++||+|||||+|-+ .+
T Consensus 196 ~~~~~~~~~~k~~~~~~~~~P~-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~ 274 (296)
T PRK14569 196 PQNEFYDYESKYSGKSIYHSPS-GLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSP 274 (296)
T ss_pred cCCCcCChhhccCCCcEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHH
Confidence 111 000 0112334455777 588888999999999999999999999999999988999999999999853 22
Q ss_pred chhcccCCCHHHHHHHHH
Q psy3968 263 VTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 263 ~~e~~tGvdl~~~~l~~a 280 (1080)
......|+|+.++.-++.
T Consensus 275 ~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 275 KSAAAEGVDFDSFVKRII 292 (296)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 334467888877766553
No 72
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.95 E-value=2.3e-25 Score=245.69 Aligned_cols=332 Identities=21% Similarity=0.286 Sum_probs=258.1
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
++|..+.||+.+.. .|.|.+++.+++.+ +|+|- |+|-.-.....+.+++. .++. |+++++++..||
T Consensus 35 ~~PA~~va~~~i~~--------~~dD~~al~ela~~--~DViT--~EfE~V~~~aL~~l~~~-~~v~-p~~~~l~~~qdR 100 (375)
T COG0026 35 DAPAAQVADRVIVA--------AYDDPEALRELAAK--CDVIT--YEFENVPAEALEKLAAS-VKVF-PSPDALRIAQDR 100 (375)
T ss_pred CCchhhcccceeec--------CCCCHHHHHHHHhh--CCEEE--EeeccCCHHHHHHHHhh-cCcC-CCHHHHHHHhhH
Confidence 46777788877764 78899999999985 67665 44433335556666665 4444 999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNG 159 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~ 159 (1080)
...|++|+++|+|+|+| ..+.+.+++..+++++|+|+|+|.+.|+ -|+|.+++++.+++......... .+
T Consensus 101 ~~eK~~l~~~Gi~va~~--~~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~ 171 (375)
T COG0026 101 LVEKQFLDKAGLPVAPF--QVVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRSDADLELRAAGLAE-------GG 171 (375)
T ss_pred HHHHHHHHHcCCCCCCe--EEeCCHHHHHHHHHHcCCceEEEeccccccCCCeEEeeCcccchhhHhhhhc-------cC
Confidence 99999999999999999 6799999999999999999999999988 89999999999998875544321 23
Q ss_pred cEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Q psy3968 160 AMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239 (1080)
Q Consensus 160 ~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 239 (1080)
..++|+|++-.+|+|+-+.++.+|++.. |+-..+++++......++|+ .++++.+++.++++.+++++|+|.|.+.||
T Consensus 172 ~~vlE~fV~F~~EiSvi~aR~~~G~~~~-yP~~eN~h~~gIl~~siaPa-~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE 249 (375)
T COG0026 172 VPVLEEFVPFEREISVIVARSNDGEVAF-YPVAENVHRNGILRTSIAPA-RIPDDLQAQAEEMAKKIAEELDYVGVLAVE 249 (375)
T ss_pred ceeEEeecccceEEEEEEEEcCCCCEEE-ecccceeeecCEEEEEEecC-cCCHHHHHHHHHHHHHHHHHcCceEEEEEE
Confidence 3499999999899999999888888765 56666788888888899999 799999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCC
Q psy3968 240 FLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDT 319 (1080)
Q Consensus 240 fivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~ 319 (1080)
|+++.+|++++.|+.||+..+.++|...+.++.++.+++..+|.|+++..+. ..++...+.-.+.. +.
T Consensus 250 ~Fv~~dg~llvNEiAPRvHNSGH~T~~gc~~SQFEqHlRAv~glPLg~~~~~-------~p~vMvNlLG~~~~----~~- 317 (375)
T COG0026 250 FFVTPDGELLVNEIAPRVHNSGHWTIDGCETSQFEQHLRAVLGLPLGSTTLL-------SPSVMVNLLGDDVP----PD- 317 (375)
T ss_pred EEEECCCcEEEeeccCCCCCccccchhhccccHHHHHHHHHhCCCCCCcccc-------CceEEEEecCCCCc----hh-
Confidence 9999999999999999999998999889999999999999999999853322 22333333221110 00
Q ss_pred CceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhc
Q psy3968 320 GRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALRE 377 (1080)
Q Consensus 320 G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~ 377 (1080)
.. ...-..++.++. .|.+....++ ..+|||...++|.+++.+.+......
T Consensus 318 ~~---~~~l~~p~~~lH---~YGK~e~R~g--RKmGHvn~~~~~~~~~~~~~~~l~~~ 367 (375)
T COG0026 318 DV---KAVLALPGAHLH---WYGKAEARPG--RKMGHVNVLGSDSDELEQLAALLPAK 367 (375)
T ss_pred hh---HHHHhCCCCEEE---EecCccCCCC--CeeeeEEeecCCHHHHHHHHHhhhhh
Confidence 00 011122233332 2444455555 68999999999977776655544433
No 73
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=99.95 E-value=1.1e-27 Score=286.27 Aligned_cols=236 Identities=17% Similarity=0.229 Sum_probs=180.9
Q ss_pred CceeeeeecCCccccccCCcchHHHH---HHHhhheeeecC----CCCC---CCCCCCCCCCCCCCCCCC-CC-Ceeeec
Q psy3968 402 GAVDTYFIDENPQLFTLQPTKNRAQK---LLNYLGTVLVNG----PSTP---LATPLLPAEVTPPVPEIP-LG-KLINTF 469 (1080)
Q Consensus 402 g~~~T~fie~~~elf~~~~~~dra~~---L~~yla~V~Vng----~~~p---~~~~~~~~~~~~~~~~~~-~G-~~i~i~ 469 (1080)
..++. |+..++.+.+.....++.+. +...+..+...| |+|+ ...+.+++++..++..+. +| ++|+|+
T Consensus 100 ~~i~i-~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~ 178 (524)
T PRK12344 100 PVVTI-FGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLC 178 (524)
T ss_pred CEEEE-EECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEc
Confidence 34666 66665555444333333332 222222222222 3455 233666777777666544 88 899999
Q ss_pred cccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh-cC
Q psy3968 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ-GS 548 (1080)
Q Consensus 470 Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~-~~ 548 (1080)
||+|+++|.+++++|+.+++++ +++|++|||||+|||+||+++|+++||++||+|++|||+|+||+++|+++++|+ .+
T Consensus 179 DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGERaGNa~lE~lv~~L~~~~ 257 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGERCGNANLCSIIPNLQLKM 257 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccccccCcCHHHHHHHHHhcc
Confidence 9999999999999999999998 899999999999999999999999999999999999999999999999999997 35
Q ss_pred C--CCCCCCHHHHHHHHHHHHHHHh-------------------------------ccCCCCccCCCCcCCcceeccCCC
Q psy3968 549 D--IDTGLDLKDISAYSAYWEQTRQ-------------------------------LYAPFECTTTMKSGNADVYLNEIP 595 (1080)
Q Consensus 549 g--~~~~~d~~~l~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~v~~~~iP 595 (1080)
| ++|++|++.|.+++++++++.+ .|.||.. ...|.+.++..++.+
T Consensus 258 g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SGiH~dgi~k~~~~Ye~~~P--~~vG~~~~i~lg~~S 335 (524)
T PRK12344 258 GYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGGIHVSAVLKDPRTYEHIDP--ELVGNRRRVLVSELA 335 (524)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhccccHHHHhCCcccccCCCH--HHhCCcccccccchh
Confidence 6 5589999999999999999864 4555554 346778889999999
Q ss_pred CchhhcHHHHHHHCCCC-c-cHHHHHHHHHHHHH--hCCCccccCCCchhhHHhhHHHHh
Q psy3968 596 GGQYTNLQFQAYSLGLG-E-FFEDVKKAYREANL--LLGDIIKVTPSSKVVGDFAQFMVQ 651 (1080)
Q Consensus 596 GG~~snl~~ql~~~g~~-~-~~~ev~~~~~~vr~--~lG~~~~VTP~Sqivg~qA~~~v~ 651 (1080)
| .+++..+|+++|+. + ..+++-+.+.+|++ +.|+ ++.+.||.+++.
T Consensus 336 G--~~~i~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~~~--------~~~~~~~~~~~~ 385 (524)
T PRK12344 336 G--RSNILAKAKELGIDLDKDDPRLKRLLERIKELEAEGY--------QFEAAEASFELL 385 (524)
T ss_pred h--HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHcCCc--------EEechHHHHHHH
Confidence 9 89999999999997 4 34445555555544 5666 788888877553
No 74
>PLN02321 2-isopropylmalate synthase
Probab=99.95 E-value=1.8e-27 Score=285.63 Aligned_cols=224 Identities=19% Similarity=0.237 Sum_probs=172.7
Q ss_pred CceeeeeecCCccccccCCcchHHHHH------HHhhhee-e-ecCCCCCCCCCCCCCCCCCCCCCCC-CC-Ceeeeccc
Q psy3968 402 GAVDTYFIDENPQLFTLQPTKNRAQKL------LNYLGTV-L-VNGPSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDM 471 (1080)
Q Consensus 402 g~~~T~fie~~~elf~~~~~~dra~~L------~~yla~V-~-Vng~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt 471 (1080)
..+|+ |+..++.+.+.+...++.+.+ ..|.... . .-.|+|++.++.+++++..++..+. +| ++|+||||
T Consensus 184 ~~I~i-~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 184 PRIHT-FIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred CEEEE-EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 46777 777777766655444444432 2222211 0 1136899999999999988888655 89 89999999
Q ss_pred cCccChHHHHHHHHHHHHHCCC---CceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc-
Q psy3968 472 AGLLKPRAAKLLIGAIREKHPD---IPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG- 547 (1080)
Q Consensus 472 ~G~~~P~~~~~lv~~l~~~~p~---~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~- 547 (1080)
+|+++|.+++++|+.+++++|+ ++|++|||||+|||+||+++|+++||++||+|++|||||+||++||+++++|+.
T Consensus 263 vG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~ 342 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCR 342 (632)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhc
Confidence 9999999999999999999874 669999999999999999999999999999999999999999999999999974
Q ss_pred -----CCCCCCCCHHHHHHHHHHHHHHHhcc----CCCCccC-------------------------CCCc----CCcce
Q psy3968 548 -----SDIDTGLDLKDISAYSAYWEQTRQLY----APFECTT-------------------------TMKS----GNADV 589 (1080)
Q Consensus 548 -----~g~~~~~d~~~l~~~~~~~~~~~~~~----~~~~~~~-------------------------~~~~----~~~~v 589 (1080)
+|++|++|++.|.+++++++++.+.. .|+.+.. ..+| .+.++
T Consensus 343 ~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~Pe~VG~~r~~~~~i 422 (632)
T PLN02321 343 GDEQLGGLYTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLFRGNDAGI 422 (632)
T ss_pred cCccccCcccccCHHHHHHHHHHHHHHhCcCCCCCcccccccceehhcCccHHHHccCcccccccCHHHhCCccccccee
Confidence 57899999999999999999975432 2222111 1122 22345
Q ss_pred eccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHh
Q psy3968 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLL 628 (1080)
Q Consensus 590 ~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~ 628 (1080)
......| .+++...|+++|+.-.-+++.+.+.+|++.
T Consensus 423 ~lgk~SG--r~~v~~~L~~lG~~l~~~~~~~~~~~vk~l 459 (632)
T PLN02321 423 VLGKLSG--RHALKSRLKELGYELDDDELDDVFKRFKAV 459 (632)
T ss_pred ccccccc--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 5555666 569999999999976566666777666654
No 75
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=99.95 E-value=1.6e-27 Score=280.26 Aligned_cols=187 Identities=20% Similarity=0.233 Sum_probs=156.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCC---CCceEEeeCCCCchhHHHHHHH
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP---DIPIHIHTHDTSGAGVASMIAC 514 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p---~~~i~~H~H~t~Gla~an~l~A 514 (1080)
|+|++.++.+++++..++..+. .| ++|+|+||+|+++|.+++++|+.+++.+| +++|++|||||+|||+||+++|
T Consensus 228 f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaA 307 (503)
T PLN03228 228 FGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAG 307 (503)
T ss_pred eccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHH
Confidence 6899999999998888777554 88 89999999999999999999999999886 5889999999999999999999
Q ss_pred HHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc------CCCCCCCCHHHHHHHHHHHHHHHhccCCCCccC--------
Q psy3968 515 AEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG------SDIDTGLDLKDISAYSAYWEQTRQLYAPFECTT-------- 580 (1080)
Q Consensus 515 i~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~------~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~-------- 580 (1080)
+++||++||+|++|||+|+||+++|+++++|+. .|+++++|++.|.+++++++++.+.+.|++...
T Consensus 308 i~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~naF~h 387 (503)
T PLN03228 308 ICAGARQVEVTINGIGERSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANCFVH 387 (503)
T ss_pred HHhCCCEEEEeccccccccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHh
Confidence 999999999999999999999999999999986 488999999999999999999766544332211
Q ss_pred ---------------------CCCcC----CcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHh
Q psy3968 581 ---------------------TMKSG----NADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLL 628 (1080)
Q Consensus 581 ---------------------~~~~~----~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~ 628 (1080)
...|. ..++......| .++++..|+++|+.-.-+++.+.+.+||+.
T Consensus 388 eSGIH~dgilK~p~tYe~~~Pe~vG~~~~~~~~i~lgk~SG--~~av~~~l~~lG~~~~~~~~~~l~~~vk~~ 458 (503)
T PLN03228 388 ESGIHQDGILKNRSTYEILSPEDIGIVKSQNSGIVLGKLSG--RHAVKDRLKELGYELDDEKLNEVFSRFRDL 458 (503)
T ss_pred ccchhHHHHhCCcccccCCCHHHhCCcccccceeecchHhh--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 11221 22344444444 458999999999987777788888888775
No 76
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.95 E-value=3.3e-26 Score=261.94 Aligned_cols=231 Identities=24% Similarity=0.321 Sum_probs=186.9
Q ss_pred CCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHH----HHHHH
Q psy3968 38 DVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEE----AMEFC 112 (1080)
Q Consensus 38 ~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee----~~~~~ 112 (1080)
++|+++|. +|...|+..+...|+..|++++|++..+..++.||..++++++++|||+|++. .+.+.++ ...+.
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~~ 158 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYV--VLTRGDWEEASLAEIE 158 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEeccccchhhHHHHH
Confidence 69999998 57888999999999999999999999999999999999999999999999984 3433332 34566
Q ss_pred HHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeee
Q psy3968 113 LKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD 192 (1080)
Q Consensus 113 ~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~ 192 (1080)
+.++||+||||..++||.||.+|++.+|+.++++.+++. ++.++||+||+| +|+++.++.+ ++.+..+.+..
T Consensus 159 ~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~~ei~ 230 (333)
T PRK01966 159 AKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN-DPKASVPGEIV 230 (333)
T ss_pred HhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC-CCeEcccEEEe
Confidence 789999999999999999999999999999999887642 468999999999 9999999986 34433332221
Q ss_pred cc--c---cccc--cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCcc---
Q psy3968 193 CS--V---QRRH--QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHT--- 262 (1080)
Q Consensus 193 ~~--~---~~~~--~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~--- 262 (1080)
+. . ...+ .......|+ .++++..+++++++.+++++||++|++++||+++++|++||+|||+|++-+..
T Consensus 231 ~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 231 KPDDFYDYEAKYLDGSAELIIPA-DLSEELTEKIRELAIKAFKALGCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred cCCceEcHHHccCCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 11 0 0111 113445687 69999999999999999999999999999999998899999999999986321
Q ss_pred -chhcccCCCHHHHHHHH
Q psy3968 263 -VTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 263 -~~e~~tGvdl~~~~l~~ 279 (1080)
......|+|+.++.-++
T Consensus 310 p~~~~~~G~~~~~l~~~i 327 (333)
T PRK01966 310 PKLWEASGLSYPELIDRL 327 (333)
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 23346788877766544
No 77
>PRK00915 2-isopropylmalate synthase; Validated
Probab=99.95 E-value=2.5e-27 Score=283.47 Aligned_cols=254 Identities=22% Similarity=0.277 Sum_probs=188.5
Q ss_pred HHHHHHHhhccEEccc----ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHH---HHhhheeeecC-
Q psy3968 368 CAKMNRALREFRVRGV----KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKL---LNYLGTVLVNG- 439 (1080)
Q Consensus 368 ~~~a~ral~~i~I~Gv----~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L---~~yla~V~Vng- 439 (1080)
++++.+.....+|.++ ..+|+...+.+.... ...+++ |+..++.+.+.+...++.+.+ ...+..+.-.|
T Consensus 58 v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~--~~~v~i-~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~ 134 (513)
T PRK00915 58 VKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAE--APRIHT-FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTD 134 (513)
T ss_pred HHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCC--CCEEEE-EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3333333344444443 233444443333333 345666 777766665544333344322 22222222122
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCC---CceEEeeCCCCchhHHHH
Q psy3968 440 ---PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPD---IPIHIHTHDTSGAGVASM 511 (1080)
Q Consensus 440 ---~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~---~~i~~H~H~t~Gla~an~ 511 (1080)
|+|++.++.+++++..++..+. +| ++|+||||+|.++|.+++++|+.+++.+|+ ++|++|||||+|||+||+
T Consensus 135 ~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANs 214 (513)
T PRK00915 135 DVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANS 214 (513)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHH
Confidence 6888888888888888877654 78 899999999999999999999999999875 999999999999999999
Q ss_pred HHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcC----CCCCCCCHHHHHHHHHHHHHHHhc---------------
Q psy3968 512 IACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGS----DIDTGLDLKDISAYSAYWEQTRQL--------------- 572 (1080)
Q Consensus 512 l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~----g~~~~~d~~~l~~~~~~~~~~~~~--------------- 572 (1080)
++|+++||++||+|++|||+|+||++||+++++|+.. |+++++|+++|.+++++++++.+.
T Consensus 215 laAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~ 294 (513)
T PRK00915 215 LAAVEAGARQVECTINGIGERAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFA 294 (513)
T ss_pred HHHHHhCCCEEEEEeecccccccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHH
Confidence 9999999999999999999999999999999999754 999999999999999999986433
Q ss_pred ----------------cCCCCccCCCCcCC-cceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHh
Q psy3968 573 ----------------YAPFECTTTMKSGN-ADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLL 628 (1080)
Q Consensus 573 ----------------~~~~~~~~~~~~~~-~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~ 628 (1080)
|.||.. ..+|.. .++......| .+++...|+++|+.-.-+++.+.+.+||+.
T Consensus 295 h~sGiH~dgi~k~~~~Ye~~~P--e~vG~~~~~i~lg~~SG--~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 363 (513)
T PRK00915 295 HESGIHQDGVLKNRETYEIMTP--ESVGLKANRLVLGKHSG--RHAFKHRLEELGYKLSDEELDKAFERFKEL 363 (513)
T ss_pred hccchhHHHHcCCcccccccCH--HHcCCcceEEEeccccC--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 222222 234555 5777778888 689999999999986667777777777765
No 78
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=99.94 E-value=4.2e-27 Score=271.47 Aligned_cols=255 Identities=18% Similarity=0.204 Sum_probs=188.2
Q ss_pred HHHHHHHHHHhhccEEccc-ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHH---HHHhhheeeecC-
Q psy3968 365 QSSCAKMNRALREFRVRGV-KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQK---LLNYLGTVLVNG- 439 (1080)
Q Consensus 365 ~eA~~~a~ral~~i~I~Gv-~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~---L~~yla~V~Vng- 439 (1080)
.++++.+.+.....++..+ +.|..-+..++..-. ..++. |+..++.+.+.+....+.+. +...+..+...|
T Consensus 52 ~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~---~~i~i-~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~ 127 (365)
T TIGR02660 52 RAVIRAIVALGLPARLMAWCRARDADIEAAARCGV---DAVHI-SIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL 127 (365)
T ss_pred HHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCc---CEEEE-EEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC
Confidence 3455555444334555554 566666666554421 23444 55555544443332223332 222222222223
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHH
Q psy3968 440 ---PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIAC 514 (1080)
Q Consensus 440 ---~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~A 514 (1080)
|+|+..++.+++++..++..+. .| ++|+||||+|.++|.+++++|+.+++.+ +++|++|+|||+|||+||+++|
T Consensus 128 ~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~v~l~~H~HNd~GlA~ANalaA 206 (365)
T TIGR02660 128 FVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAV-DLPLEMHAHNDLGMATANTLAA 206 (365)
T ss_pred EEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHH
Confidence 5788888888888888777654 78 8999999999999999999999999998 6999999999999999999999
Q ss_pred HHcCCCEEeeccCCCCCCCCCCcHHHHHHHH-hcCCCCCCCCHHHHHHHHHHHHHHHhc---------------------
Q psy3968 515 AEAGADVVDVAVDSMSGMTSQPSMGAVVASL-QGSDIDTGLDLKDISAYSAYWEQTRQL--------------------- 572 (1080)
Q Consensus 515 i~aG~~~vd~s~~glg~~~g~~~~e~~v~~l-~~~g~~~~~d~~~l~~~~~~~~~~~~~--------------------- 572 (1080)
+++||++||+|++|||+|+||++||+++.+| +.+|+++++|++.|.+++++++++.+.
T Consensus 207 ~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH 286 (365)
T TIGR02660 207 VRAGATHVNTTVNGLGERAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGIH 286 (365)
T ss_pred HHhCCCEEEEEeeccccccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchh
Confidence 9999999999999999999999999999999 678999999999999999999985332
Q ss_pred ----------cCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHh
Q psy3968 573 ----------YAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLL 628 (1080)
Q Consensus 573 ----------~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~ 628 (1080)
|.||.. ...|...++......| .+++...|+++|+.-.-+++.+.+.+||+.
T Consensus 287 ~~~i~k~~~~Ye~~~P--~~vG~~~~~~i~~~SG--~~~i~~~l~~~g~~~~~~~~~~~~~~vk~~ 348 (365)
T TIGR02660 287 VDGLLKDPRTYEPFDP--ELVGRSRRIVIGKHSG--RAALINALAQLGIPLSEEEAAALLPAVRAF 348 (365)
T ss_pred HHHHhCCcccCCCcCH--HHcCCeeEEEeEchhh--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 223322 2345555666655666 668999999999987667788888887764
No 79
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=99.94 E-value=5.8e-27 Score=278.43 Aligned_cols=255 Identities=20% Similarity=0.233 Sum_probs=188.6
Q ss_pred HHHHHHHHhhccEEccc----ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHHH---Hhhheeeec-
Q psy3968 367 SCAKMNRALREFRVRGV----KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLL---NYLGTVLVN- 438 (1080)
Q Consensus 367 A~~~a~ral~~i~I~Gv----~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~---~yla~V~Vn- 438 (1080)
+++++.+.+...+|.++ +.+|+...+.+.... ...+++ |+..++.+.+.+...++.+.+. ..+..+.-.
T Consensus 54 ~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~--~~~v~i-~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g 130 (494)
T TIGR00973 54 AVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAE--KFRIHT-FIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFT 130 (494)
T ss_pred HHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccC--CCEEEE-EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 33444333444455554 344444444444332 346777 7777776665544444444322 222221111
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCC---CCceEEeeCCCCchhHHH
Q psy3968 439 ---GPSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP---DIPIHIHTHDTSGAGVAS 510 (1080)
Q Consensus 439 ---g~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p---~~~i~~H~H~t~Gla~an 510 (1080)
.|+|++.++.+++++..++..+. .| ++|+||||+|.++|.+++++|+.+++++| +++|++|||||+|||+||
T Consensus 131 ~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvAN 210 (494)
T TIGR00973 131 DDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVAN 210 (494)
T ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHH
Confidence 26899999999998888877654 78 89999999999999999999999999987 478999999999999999
Q ss_pred HHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc----CCCCCCCCHHHHHHHHHHHHHHHhc--------------
Q psy3968 511 MIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG----SDIDTGLDLKDISAYSAYWEQTRQL-------------- 572 (1080)
Q Consensus 511 ~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~-------------- 572 (1080)
+++|+++||++||+|++|||+|+||++||+++++|+. +|+++++|++.|.+++++++++.+.
T Consensus 211 alaAv~aGa~~vd~tv~GlGERaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF 290 (494)
T TIGR00973 211 SLAAVQNGARQVECTINGIGERAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAF 290 (494)
T ss_pred HHHHHHhCCCEEEEEeecccccccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHH
Confidence 9999999999999999999999999999999999973 5899999999999999999986433
Q ss_pred -----------------cCCCCccCCCCcC-CcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHh
Q psy3968 573 -----------------YAPFECTTTMKSG-NADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLL 628 (1080)
Q Consensus 573 -----------------~~~~~~~~~~~~~-~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~ 628 (1080)
|.|+.. ...|. ..++......| .+++...|+++|+.-.-+++.+.+.+|++.
T Consensus 291 ~h~sGiH~dgi~k~~~~Ye~~~P--e~vG~~~~~i~lg~~SG--~~~i~~~l~~~g~~l~~~~~~~~~~~vk~~ 360 (494)
T TIGR00973 291 AHESGIHQDGVLKNKETYEIMSP--EDIGLTAEQLVLGKHSG--RHAFKDRLEELGFKLDDEELDKLFEKFKEL 360 (494)
T ss_pred HhccchhHHHHhCCcccccCCCH--HHcCCcceeEEeccccc--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 222222 23442 34677777788 689999999999976566677777777765
No 80
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=99.94 E-value=8.7e-27 Score=269.57 Aligned_cols=186 Identities=20% Similarity=0.225 Sum_probs=157.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
++|++.++.+++++..++..+. .| ++|+||||+|.++|.+++++++.+++.+ +++|++|||||+|||+||+++|+++
T Consensus 134 ~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~a 212 (378)
T PRK11858 134 FSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEA 212 (378)
T ss_pred EEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHc
Confidence 3688888888888888877655 78 8999999999999999999999999998 8999999999999999999999999
Q ss_pred CCCEEeeccCCCCCCCCCCcHHHHHHHHh-cCCCCCCCCHHHHHHHHHHHHHHHhccC----CCCccC------------
Q psy3968 518 GADVVDVAVDSMSGMTSQPSMGAVVASLQ-GSDIDTGLDLKDISAYSAYWEQTRQLYA----PFECTT------------ 580 (1080)
Q Consensus 518 G~~~vd~s~~glg~~~g~~~~e~~v~~l~-~~g~~~~~d~~~l~~~~~~~~~~~~~~~----~~~~~~------------ 580 (1080)
||++||+|++|||+|+||++||+++++|+ .+|+++++|+++|.+++++++++.+... |+.+..
T Consensus 213 Ga~~vd~tv~GlGeraGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGiH~~g 292 (378)
T PRK11858 213 GAKQVHTTVNGLGERAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDG 292 (378)
T ss_pred CCCEEEEeeccccccccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccccHHH
Confidence 99999999999999999999999999999 6899999999999999999998643322 221111
Q ss_pred -------------CCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHh
Q psy3968 581 -------------TMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLL 628 (1080)
Q Consensus 581 -------------~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~ 628 (1080)
...|...++......| .+++...|+++|+.-.-+++.+.+.+||+.
T Consensus 293 i~k~~~~Ye~~~P~~vG~~~~~~~g~~SG--~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~ 351 (378)
T PRK11858 293 VLKNPLTYEPFLPEEVGLERRIVLGKHSG--RHALKNKLKEYGIELSREELCELLEKVKEL 351 (378)
T ss_pred HhCCcccccccCHHHcCCccccccccccc--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 2344445555555556 568999999999986667888888888775
No 81
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=99.94 E-value=7.8e-27 Score=262.98 Aligned_cols=133 Identities=23% Similarity=0.352 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|+||++++.+++++..++..+. +| ++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++
T Consensus 186 fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~a 265 (347)
T PLN02746 186 VGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQM 265 (347)
T ss_pred ecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHh
Confidence 6899999999999998888765 89 899999999999999999999999999977799999999999999999999999
Q ss_pred CCCEEeeccCCCCC------CCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhc
Q psy3968 518 GADVVDVAVDSMSG------MTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQL 572 (1080)
Q Consensus 518 G~~~vd~s~~glg~------~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 572 (1080)
||++||+|++|||| ++||+++|+++++|+.+|++|++|+++|.++++++++..+.
T Consensus 266 Ga~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~ 326 (347)
T PLN02746 266 GISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGR 326 (347)
T ss_pred CCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999 79999999999999999999999999999999999997443
No 82
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.94 E-value=2.6e-25 Score=255.60 Aligned_cols=229 Identities=20% Similarity=0.252 Sum_probs=180.9
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy3968 37 NDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY 115 (1080)
Q Consensus 37 ~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i 115 (1080)
.++|.++|. +|...|+..+...|+..|++++|+++.+..++.||..+|++++++|||+|++. .+.+.++.. .+.+
T Consensus 89 ~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~--~~~l 164 (343)
T PRK14568 89 IRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFW--TVTADERPD--AATL 164 (343)
T ss_pred ccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEECCchhh--hhhc
Confidence 579999997 67788999999999999999999999999999999999999999999999984 344443322 3568
Q ss_pred CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEE-EEeeec-
Q psy3968 116 GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH-LYERDC- 193 (1080)
Q Consensus 116 gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~-l~~r~~- 193 (1080)
+||+||||+.+++|+|+.+|++.+||.++++.+... ++.++||+||+| +|+++.++.++.+..+. +.....
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~sv~vl~~~~~~~~~~~~~i~~~ 237 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-SEVGCAVLGNGADLVVGEVDQIRLS 237 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-EEEEEEEEcCCCCcceecceEEecC
Confidence 999999999999999999999999999999877542 468999999999 89999999764432221 111000
Q ss_pred -cccccc---------cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCcc-
Q psy3968 194 -SVQRRH---------QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHT- 262 (1080)
Q Consensus 194 -~~~~~~---------~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~- 262 (1080)
...+.+ .......|+ .++++..+++++++.+++++||++|.+++||+++++|++||+|||++++-+..
T Consensus 238 ~~~~~~~~k~~~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S 316 (343)
T PRK14568 238 HGFFRIHQENEPEKGSENSTIIVPA-DISAEERSRVQETAKAIYRALGCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYS 316 (343)
T ss_pred CCccchhhhhccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccC
Confidence 011111 112345677 59999999999999999999999999999999999999999999999986321
Q ss_pred ---chhcccCCCHHHHHH
Q psy3968 263 ---VTEEITGVDLVQSQI 277 (1080)
Q Consensus 263 ---~~e~~tGvdl~~~~l 277 (1080)
....+.|+++.++.-
T Consensus 317 ~~p~~~~~~G~~~~~l~~ 334 (343)
T PRK14568 317 RYPRMMAAAGIPLAELID 334 (343)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 112346776555443
No 83
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.94 E-value=4.9e-25 Score=249.52 Aligned_cols=241 Identities=23% Similarity=0.366 Sum_probs=190.3
Q ss_pred HHHHHHHHcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q psy3968 29 EIIRVAKENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEE 107 (1080)
Q Consensus 29 ~Ii~~a~~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee 107 (1080)
.+++.++..++|+|++.+ |...|+..+...++..|++++|++..++.++.||..++++|+++|||+|++ ..+.+.++
T Consensus 47 ~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~--~~~~~~~~ 124 (304)
T PRK01372 47 DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPW--IVLTREED 124 (304)
T ss_pred chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCE--EEEeCcch
Confidence 355566677899999975 445677888899999999999999999999999999999999999999998 45788888
Q ss_pred HHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEE
Q psy3968 108 AMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187 (1080)
Q Consensus 108 ~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~ 187 (1080)
+..++++++||+|+||..|+||+|+.++++.+++.++++.+.. + ...+++|+||+| +|+++.++.+....++.
T Consensus 125 ~~~~~~~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~-----~-~~~~lvEe~i~G-~E~~v~vi~~~~~~~~~ 197 (304)
T PRK01372 125 LLAAIDKLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFK-----Y-DDEVLVEKYIKG-RELTVAVLGGKALPVIE 197 (304)
T ss_pred HHHHHhhcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----c-CCcEEEEcccCC-EEEEEEEECCCccceEE
Confidence 8888899999999999999999999999999999998877642 2 457999999999 89999998663322222
Q ss_pred EEeeec--ccc--ccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCc--
Q psy3968 188 LYERDC--SVQ--RRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEH-- 261 (1080)
Q Consensus 188 l~~r~~--~~~--~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~-- 261 (1080)
+..... ... ..........|+ .++++..+++.+.+.++++++|++|.+++||+++++|++||+|+|||++-..
T Consensus 198 ~~~~~~~~~~~~~~~~g~~~~~~p~-~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~ 276 (304)
T PRK01372 198 IVPAGEFYDYEAKYLAGGTQYICPA-GLPAEIEAELQELALKAYRALGCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHS 276 (304)
T ss_pred EEecCCEEeeeccccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCCCCEEEEEecCCCCCCccc
Confidence 211100 000 011122345565 5888999999999999999999999999999999889999999999987531
Q ss_pred --cchhcccCCCHHHHHHHH
Q psy3968 262 --TVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 262 --~~~e~~tGvdl~~~~l~~ 279 (1080)
+......|+|+.+.+..+
T Consensus 277 ~~~~~~~~~g~~~~~~~~~i 296 (304)
T PRK01372 277 LVPMAARAAGISFSELVDRI 296 (304)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 112234588877665554
No 84
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.94 E-value=5.7e-25 Score=253.21 Aligned_cols=234 Identities=21% Similarity=0.221 Sum_probs=183.7
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC----CCCHHHHHHH
Q psy3968 37 NDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP----ITTTEEAMEF 111 (1080)
Q Consensus 37 ~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~----v~s~ee~~~~ 111 (1080)
.++|.|+|. +|...|+..+...|+..|+|++|++..+..++.||..+|++++++|||+|++.... ..+.+++.+.
T Consensus 86 ~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~ 165 (364)
T PRK14570 86 LEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKD 165 (364)
T ss_pred cCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHH
Confidence 469999997 46778999999999999999999999999999999999999999999999973211 1234555443
Q ss_pred -HHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEe
Q psy3968 112 -CLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYE 190 (1080)
Q Consensus 112 -~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~ 190 (1080)
...++||+||||..+++|.|+.++++.+|+.++++.++.. ++.++||+||+| +|+++.++++....+....+
T Consensus 166 ~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G-rEi~v~Vlg~~~~~v~~~~E 238 (364)
T PRK14570 166 IKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA-REIECSVIGNEQIKIFTPGE 238 (364)
T ss_pred HHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-EEEEEEEECCCCceEeeeEE
Confidence 4679999999999999999999999999999999987642 457999999999 99999999765444433333
Q ss_pred eec------c----ccc-cccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC-CCCEEEEEEeccCC
Q psy3968 191 RDC------S----VQR-RHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-SGQFYFIEVNARLQ 258 (1080)
Q Consensus 191 r~~------~----~~~-~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-dG~~~~iEvNpR~~ 258 (1080)
... . +.. .........|+ .+++++.+++++.|.+++++||++|.+++||++++ +|++||+|+|+++|
T Consensus 239 i~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa-~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~~g~~yvlEiNt~PG 317 (364)
T PRK14570 239 IVVQDFIFYDYDAKYSTIPGNSIVFNIPA-HLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKDTGLIYLNEINTIPG 317 (364)
T ss_pred EEeCCCCccCHHHhcCCCCCCceEEECCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECCCCcEEEEEeeCCCC
Confidence 211 0 100 01222345687 59999999999999999999999999999999986 58899999999998
Q ss_pred CCcc----chhcccCCCHHHHHHH
Q psy3968 259 VEHT----VTEEITGVDLVQSQIR 278 (1080)
Q Consensus 259 g~~~----~~e~~tGvdl~~~~l~ 278 (1080)
-+.. ..-...|+++.++.-+
T Consensus 318 ~t~~S~~p~~~~~~G~~~~~li~~ 341 (364)
T PRK14570 318 FTDISMFAKMCEHDGLQYKSLVDN 341 (364)
T ss_pred CCcccHHHHHHHHcCCCHHHHHHH
Confidence 6321 2233468876554433
No 85
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=99.94 E-value=1.4e-26 Score=257.62 Aligned_cols=133 Identities=24% Similarity=0.355 Sum_probs=126.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|+||++++.+++++...+..+. +| ++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~a 223 (287)
T PRK05692 144 LGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEE 223 (287)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHh
Confidence 6899999999999888888665 89 899999999999999999999999999988999999999999999999999999
Q ss_pred CCCEEeeccCCCCC------CCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhc
Q psy3968 518 GADVVDVAVDSMSG------MTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQL 572 (1080)
Q Consensus 518 G~~~vd~s~~glg~------~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 572 (1080)
||++||+|++|||| ++||+++|+++++|+.+|++|++|+++|.+++++++++.+.
T Consensus 224 G~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~ 284 (287)
T PRK05692 224 GITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGR 284 (287)
T ss_pred CCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCC
Confidence 99999999999999 79999999999999999999999999999999999998654
No 86
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.93 E-value=8.1e-25 Score=251.78 Aligned_cols=232 Identities=16% Similarity=0.242 Sum_probs=182.7
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC------CCHHHHH
Q psy3968 37 NDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI------TTTEEAM 109 (1080)
Q Consensus 37 ~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v------~s~ee~~ 109 (1080)
.++|.++++ +|...|+..+...|+..|++++|+++.++.++.||..+|++|+++|||+|++. .+ .+.+++.
T Consensus 87 ~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~--~~~~~~~~~~~~~~~ 164 (347)
T PRK14572 87 LDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFF--ELEKLKYLNSPRKTL 164 (347)
T ss_pred cCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEEccccccChHHHH
Confidence 468998887 57788999999999999999999999999999999999999999999999984 22 2344555
Q ss_pred HHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecC-C--cEE
Q psy3968 110 EFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA-G--NVV 186 (1080)
Q Consensus 110 ~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~-G--~vv 186 (1080)
+..++++||+||||+.|++|.||.+|++.+||..+++.++.. ++.++||+||+| +|+++.++.+.. | ..+
T Consensus 165 ~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~~~~g~~~~~ 237 (347)
T PRK14572 165 LKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLERYRGGKRNPI 237 (347)
T ss_pred HHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeCccCCCCCce
Confidence 556779999999999999999999999999999999887542 568999999999 999999997422 2 222
Q ss_pred EEEeeeccccc-------cc--cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccC
Q psy3968 187 HLYERDCSVQR-------RH--QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARL 257 (1080)
Q Consensus 187 ~l~~r~~~~~~-------~~--~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~ 257 (1080)
.+...+..... .+ .......|+ .+++++.+++.+.+.+++++||++|.+++||+++ +|++|++|||+++
T Consensus 238 ~l~~~ei~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~-~~~~~vlEiNt~P 315 (347)
T PRK14572 238 ALPATEIVPGGEFFDFESKYKQGGSEEITPA-RISDQEMKRVQELAIRAHESLGCKGYSRTDFIIV-DGEPHILETNTLP 315 (347)
T ss_pred ecccEEEecCCCccCHHHccCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEE-CCcEEEEeeeCCC
Confidence 22111111100 01 123446787 5899999999999999999999999999999997 5779999999999
Q ss_pred CCCc-cc---hhcccCCCHHHHHHHH
Q psy3968 258 QVEH-TV---TEEITGVDLVQSQIRV 279 (1080)
Q Consensus 258 ~g~~-~~---~e~~tGvdl~~~~l~~ 279 (1080)
|-+. .+ .....|+++.++.-++
T Consensus 316 G~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 316 GMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred CCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 8532 12 2335788777665544
No 87
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.93 E-value=1.1e-24 Score=247.92 Aligned_cols=234 Identities=23% Similarity=0.355 Sum_probs=182.5
Q ss_pred cCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCC-CHH---HH--H
Q psy3968 37 NDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPIT-TTE---EA--M 109 (1080)
Q Consensus 37 ~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~-s~e---e~--~ 109 (1080)
.++|+|+|.. |...|+..++..++..|++++|+++.++.++.||..++++|+++|||+|++. .+. +.+ ++ .
T Consensus 62 ~~~D~v~~~~~g~~~~~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~ 139 (315)
T TIGR01205 62 EGIDVVFPVLHGRYGEDGTIQGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYI--VLTQNRASADELECE 139 (315)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEecccccchhhhHH
Confidence 6799999974 4566788889999999999999999999999999999999999999999984 343 332 22 2
Q ss_pred HHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcE-EEE
Q psy3968 110 EFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV-VHL 188 (1080)
Q Consensus 110 ~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v-v~l 188 (1080)
.+...++||+|+||..|++|+||+++++.+++.++++.+... +..+++|+||+| +|+++.++.++++.. +.+
T Consensus 140 ~~~~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~~v~vi~~~~~~~~~~~ 212 (315)
T TIGR01205 140 QVAEPLGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG-RELEVSILGNEEALPIIEI 212 (315)
T ss_pred HHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC-EEEEEEEECCCCccceEEe
Confidence 344678999999999999999999999999999998876532 457999999999 999999998544322 222
Q ss_pred Eeeec---ccccc--ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCcc-
Q psy3968 189 YERDC---SVQRR--HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHT- 262 (1080)
Q Consensus 189 ~~r~~---~~~~~--~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~- 262 (1080)
..+.. ..... ........|+ .++++..+++++.+.+++++||++|++++||+++++|++||+|||||++....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 213 VPEIEGFYDYEAKYLDGSTEYVIPA-PLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAIS 291 (315)
T ss_pred cCCCCCeeCcccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCCcc
Confidence 11111 00000 1112334676 58899999999999999999999999999999998888999999999876321
Q ss_pred ---chhcccCCCHHHHHHHHH
Q psy3968 263 ---VTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 263 ---~~e~~tGvdl~~~~l~~a 280 (1080)
......|+|+.++...+.
T Consensus 292 ~~~~~~~~~G~~~~~l~~~ii 312 (315)
T TIGR01205 292 LFPKAAAAAGIEFSQLVERIL 312 (315)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 233457888887776653
No 88
>PRK09389 (R)-citramalate synthase; Provisional
Probab=99.93 E-value=5.9e-26 Score=269.15 Aligned_cols=221 Identities=19% Similarity=0.224 Sum_probs=168.7
Q ss_pred ceeeeeecCCccccccCCcchHHHHHHHhhhee---eecC----CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccC
Q psy3968 403 AVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTV---LVNG----PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAG 473 (1080)
Q Consensus 403 ~~~T~fie~~~elf~~~~~~dra~~L~~yla~V---~Vng----~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G 473 (1080)
.++. |+..++.+.+.+....+.+.+......+ .-.| |++...++.+++++..++..+. +| ++|+||||+|
T Consensus 89 ~v~i-~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG 167 (488)
T PRK09389 89 SVHL-VVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVG 167 (488)
T ss_pred EEEE-EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3666 6666666655444444444332222111 1122 2344455667777777666544 78 8999999999
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc-CCCCC
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG-SDIDT 552 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~-~g~~~ 552 (1080)
.++|.+++++++.+++.. +++|++|||||+|||+||+++|+++||++||+|++|||+|+||++||+++++|+. +|+++
T Consensus 168 ~~~P~~~~~lv~~l~~~~-~v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGERaGNa~lE~lv~~L~~~~g~~~ 246 (488)
T PRK09389 168 ILTPEKTYELFKRLSELV-KGPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGERAGNASLEEVVMALKHLYDVET 246 (488)
T ss_pred CcCHHHHHHHHHHHHhhc-CCeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccccccCccHHHHHHHHHhhcCCCC
Confidence 999999999999999987 6999999999999999999999999999999999999999999999999999996 59999
Q ss_pred CCCHHHHHHHHHHHHHHHhccC----CCCccC-------------------------CCCcCCcceeccCCCCchhhcHH
Q psy3968 553 GLDLKDISAYSAYWEQTRQLYA----PFECTT-------------------------TMKSGNADVYLNEIPGGQYTNLQ 603 (1080)
Q Consensus 553 ~~d~~~l~~~~~~~~~~~~~~~----~~~~~~-------------------------~~~~~~~~v~~~~iPGG~~snl~ 603 (1080)
++|++.|.+++++++++.+... |+.+.. ..+|...++......| .+++.
T Consensus 247 ~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~P~~vG~~~~~~lg~~SG--~~~v~ 324 (488)
T PRK09389 247 GIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGIHVDGLLKDTETYEPITPETVGRERRIVLGKHAG--RAALK 324 (488)
T ss_pred CcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchhhHHHHhCCcccCCCCCHHHcCCccccccccccc--HHHHH
Confidence 9999999999999998644322 221111 2355566666677777 67999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHH
Q psy3968 604 FQAYSLGLGEFFEDVKKAYREANL 627 (1080)
Q Consensus 604 ~ql~~~g~~~~~~ev~~~~~~vr~ 627 (1080)
..|+++|+.-.-+++.+.+.+|++
T Consensus 325 ~~l~~~g~~~~~~~~~~~~~~vk~ 348 (488)
T PRK09389 325 AALKEMGIEVSDDQLNEIVSRVKE 348 (488)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999997656677777777776
No 89
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=99.93 E-value=5.8e-26 Score=270.78 Aligned_cols=225 Identities=15% Similarity=0.188 Sum_probs=173.4
Q ss_pred CceeeeeecCCccccccCCcchHHHHHHHh---hheeeecC----CCCC---CCCCCCCCCCCCCCCCCC-CC-Ceeeec
Q psy3968 402 GAVDTYFIDENPQLFTLQPTKNRAQKLLNY---LGTVLVNG----PSTP---LATPLLPAEVTPPVPEIP-LG-KLINTF 469 (1080)
Q Consensus 402 g~~~T~fie~~~elf~~~~~~dra~~L~~y---la~V~Vng----~~~p---~~~~~~~~~~~~~~~~~~-~G-~~i~i~ 469 (1080)
..++. |+..++.+.+.+...++.+.+... +..+.-.| |.+. ...+.+++++.+++..+. +| ++|+|+
T Consensus 96 ~~v~i-~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~ 174 (526)
T TIGR00977 96 PVVTI-FGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLC 174 (526)
T ss_pred CEEEE-EeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 34666 676666666554444444433222 21111111 2222 223677777777777544 88 899999
Q ss_pred cccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh-cC
Q psy3968 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ-GS 548 (1080)
Q Consensus 470 Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~-~~ 548 (1080)
||+|+++|.+++++++.+++++|..+|++|||||+|||+||+++|++|||++||+|++|||||+||+++|+++++|+ .+
T Consensus 175 DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGERaGNa~Le~v~~~L~~~~ 254 (526)
T TIGR00977 175 DTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGERCGNANLCSLIPNLQLKL 254 (526)
T ss_pred cCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCccCCCcHHHHHHHHHhhc
Confidence 99999999999999999999997666999999999999999999999999999999999999999999999999997 47
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHHhc-------------------------------cCCCCccCCCCcCCcceeccCCC
Q psy3968 549 DID--TGLDLKDISAYSAYWEQTRQL-------------------------------YAPFECTTTMKSGNADVYLNEIP 595 (1080)
Q Consensus 549 g~~--~~~d~~~l~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~iP 595 (1080)
|++ |++|++.|.+++++++++.+. |.|+.. ..+|...++......
T Consensus 255 g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~P--e~vG~~~~i~lg~~S 332 (526)
T TIGR00977 255 GYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGVHVSAVQRNPFTYEHIAP--ELVGNERRIVVSELA 332 (526)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccccHHHHhCCccccccCCH--HHcCCccEEEEeccc
Confidence 777 799999999999999986432 333332 345677788888899
Q ss_pred CchhhcHHHHHHHCCCC-cc-HHHHHHHHHHHHH--hCCC
Q psy3968 596 GGQYTNLQFQAYSLGLG-EF-FEDVKKAYREANL--LLGD 631 (1080)
Q Consensus 596 GG~~snl~~ql~~~g~~-~~-~~ev~~~~~~vr~--~lG~ 631 (1080)
| .+++..+|+++|+. ++ .+++.+.+.++++ +.|+
T Consensus 333 G--~~~v~~~l~~~g~~l~~~~~~~~~~~~~vk~~~~~g~ 370 (526)
T TIGR00977 333 G--LSNVLSKAKEFGIEIDRQSPACRTILAKIKELEQQGY 370 (526)
T ss_pred C--HHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHCCc
Confidence 9 89999999999996 33 3678888888887 4554
No 90
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=99.93 E-value=4.2e-26 Score=262.69 Aligned_cols=247 Identities=21% Similarity=0.269 Sum_probs=182.6
Q ss_pred EEcccccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHHHHhhhee---eecC----CCCCCCCCCCCC
Q psy3968 379 RVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTV---LVNG----PSTPLATPLLPA 451 (1080)
Q Consensus 379 ~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V---~Vng----~~~p~~~~~~~~ 451 (1080)
.+.++.-++.--.+.+.... ...+|+ |+.+++.+.+.+...++.+.+..+...+ .-.| +++....+.+++
T Consensus 70 ~~~~~~~~~~~~~ea~~~a~--~~~i~i-f~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~ 146 (409)
T COG0119 70 LIAALARAIKRDIEALLEAG--VDRIHI-FIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPE 146 (409)
T ss_pred hhhhhHHhHHhhHHHHHhCC--CCEEEE-EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHH
Confidence 34444444442222333333 345888 8988888777665555555333332222 2122 235555577777
Q ss_pred CCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCC
Q psy3968 452 EVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528 (1080)
Q Consensus 452 ~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~g 528 (1080)
++.+++..+. .| ++|+|+||+|.++|..++++++++++.+| +++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 147 ~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnG 226 (409)
T COG0119 147 FLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNG 226 (409)
T ss_pred HHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccc
Confidence 7777776544 67 89999999999999999999999999997 599999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHh---cCCCCCCCCHHHHHHHHHHHHHHHhccCCCCc----cC---------------------
Q psy3968 529 MSGMTSQPSMGAVVASLQ---GSDIDTGLDLKDISAYSAYWEQTRQLYAPFEC----TT--------------------- 580 (1080)
Q Consensus 529 lg~~~g~~~~e~~v~~l~---~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~----~~--------------------- 580 (1080)
+|+|+||+++++++++|. .++++|++|++.|.++++++++..+...|.+. ..
T Consensus 227 iGERaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGIH~dgvlkn~~tYE 306 (409)
T COG0119 227 IGERAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGIHQDGVLKNPETYE 306 (409)
T ss_pred ceeccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcchhHHHHhhCHhhcC
Confidence 999999999999996665 56789999999999999999998766333321 11
Q ss_pred ----CCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhC
Q psy3968 581 ----TMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLL 629 (1080)
Q Consensus 581 ----~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~l 629 (1080)
..+|...+......-+| ...+...|+++|+...-+++.+++.+|+++-
T Consensus 307 ~i~Pe~VG~~r~~vi~~~~sg-~~~~~~~l~~~g~~~~~~~~~~~~~~vk~l~ 358 (409)
T COG0119 307 PIDPEDVGRRRRIVIGGKHSG-RKAVKAKLEELGIELDEEELDKLFSRVKELA 358 (409)
T ss_pred CCCHHHcCCeeeeEeeccccc-hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 23344444444422222 4577789999999988999999999999864
No 91
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=99.93 E-value=6.1e-26 Score=261.18 Aligned_cols=181 Identities=22% Similarity=0.295 Sum_probs=152.0
Q ss_pred CCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC
Q psy3968 443 PLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD 520 (1080)
Q Consensus 443 p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~ 520 (1080)
...++.+++++..++..+. +| ++|+|+||+|.++|.+++++++.+++.++ ++|++|||||+|||+||+++|+++||+
T Consensus 133 eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~ 211 (363)
T TIGR02090 133 EDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAE 211 (363)
T ss_pred eecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCC
Confidence 3445666677776666544 78 89999999999999999999999999984 999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCCCcHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHHHHHhc---------------------------
Q psy3968 521 VVDVAVDSMSGMTSQPSMGAVVASLQG-SDIDTGLDLKDISAYSAYWEQTRQL--------------------------- 572 (1080)
Q Consensus 521 ~vd~s~~glg~~~g~~~~e~~v~~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~--------------------------- 572 (1080)
+||+|++|||+++||++||+++++|+. +|+++++|+++|.+++++++++.+.
T Consensus 212 ~vd~s~~GlGeraGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGiH~~~i~k 291 (363)
T TIGR02090 212 QVHVTVNGIGERAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGIHVDGVIE 291 (363)
T ss_pred EEEEEeeccccccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcchhHHHHcC
Confidence 999999999999999999999999997 8999999999999999999886433
Q ss_pred ----cCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHh
Q psy3968 573 ----YAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLL 628 (1080)
Q Consensus 573 ----~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~ 628 (1080)
|.||.. ...|...++......| .+++...|+++|+.-.-+++.+.+.+||+.
T Consensus 292 ~~~~Ye~~~P--~~vG~~~~~~~g~~SG--~~~i~~~l~~~g~~~~~~~~~~~~~~vk~~ 347 (363)
T TIGR02090 292 NPLTYEPISP--EVVGNKRRIILGKHSG--RHAVEAKLKELGIKVTDEQLKEILKRIKEI 347 (363)
T ss_pred CcccCCCCCH--HHcCCcceeechhhcc--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 223322 2345555555666666 669999999999986667788888888775
No 92
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=99.93 E-value=3.9e-26 Score=252.80 Aligned_cols=128 Identities=29% Similarity=0.459 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|+||++++.+++++..++..+. +| ++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~a 217 (274)
T cd07938 138 FGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEA 217 (274)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHh
Confidence 6899999988888888777655 89 899999999999999999999999999989999999999999999999999999
Q ss_pred CCCEEeeccCCCC------CCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy3968 518 GADVVDVAVDSMS------GMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWE 567 (1080)
Q Consensus 518 G~~~vd~s~~glg------~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~ 567 (1080)
||++||+|++||| ||+||+++|+++++|+.+|+++++|+++|.+++++++
T Consensus 218 Ga~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~ 273 (274)
T cd07938 218 GVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGIDLDKLLAAARWIS 273 (274)
T ss_pred CCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 9999999999999 5799999999999999999999999999999999986
No 93
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=99.93 E-value=4.6e-26 Score=252.51 Aligned_cols=136 Identities=22% Similarity=0.274 Sum_probs=125.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|+||| +.+++++.+++..+. +| ++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++
T Consensus 138 ~~~~~--r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~a 215 (280)
T cd07945 138 WSNGM--RDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKA 215 (280)
T ss_pred CCCCC--cCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 68998 678888888877655 89 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeeccCCCCCCCCCCcHHHHHHHHh-cCCCCCCCCHHHHHHHHHHHHHHHhccCCCC
Q psy3968 518 GADVVDVAVDSMSGMTSQPSMGAVVASLQ-GSDIDTGLDLKDISAYSAYWEQTRQLYAPFE 577 (1080)
Q Consensus 518 G~~~vd~s~~glg~~~g~~~~e~~v~~l~-~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 577 (1080)
||++||+|++|||+++||++||+++.+|+ .+|++|++|+++|.++++++++..+...+.+
T Consensus 216 Ga~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~ 276 (280)
T cd07945 216 GIKGLHTTVNGLGERAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPAN 276 (280)
T ss_pred CCCEEEEecccccccccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCC
Confidence 99999999999999999999999999996 6899999999999999999999876655543
No 94
>KOG0237|consensus
Probab=99.93 E-value=7e-24 Score=239.45 Aligned_cols=350 Identities=19% Similarity=0.211 Sum_probs=262.7
Q ss_pred CCCHHHHHHHHHHcCCCEEEeCCC-cccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 24 YLNIPEIIRVAKENDVDAIHPGYG-FLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 24 yld~e~Ii~~a~~~~iDaVipg~g-~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
..|.+++.++|++++|..|++|.+ .++ ..++..+.+.||+++||+.+++++..+|..+|+++.++|||+..| ..+
T Consensus 54 ~~d~~ala~f~~e~~I~lVvvGPE~PL~--~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y--~~f 129 (788)
T KOG0237|consen 54 VADFEALASFCKEHNINLVVVGPELPLV--AGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKY--KTF 129 (788)
T ss_pred hhhHHHHHHHHHHcceeEEEECCchhhh--hhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCccee--eee
Confidence 347899999999999999999987 455 667889999999999999999999999999999999999999998 579
Q ss_pred CCHHHHHHHHHHhC-CcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEE
Q psy3968 103 TTTEEAMEFCLKYG-LPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLG 179 (1080)
Q Consensus 103 ~s~ee~~~~~~~ig-fPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~ 179 (1080)
++.+++..|+++.+ .++|||+..-+.|+||.+..+.+|.-++++.+.... .|| ...++|||+++| .|+++-.+.
T Consensus 130 t~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~--~fg~AG~tvViEE~LEG-eEvS~laft 206 (788)
T KOG0237|consen 130 TDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKK--VFGSAGKTVVIEELLEG-EEVSFLAFT 206 (788)
T ss_pred CCHHHHHHHHHhCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhh--hhccccceEehhhhcCc-ceEEEEEEe
Confidence 99999999999999 579999999999999999999999999999988643 355 348999999999 899988888
Q ss_pred ecCCcEEEEEeeecc------ccccccEEEEEcCCCCCCHHHHHHHHHH----HHHHHHHc--CCcceEEEEEEEcCCCC
Q psy3968 180 DKAGNVVHLYERDCS------VQRRHQKVVEIAPAPHLDINVRNKMTDL----AVKLAKHV--GYSNAGTVEFLCDESGQ 247 (1080)
Q Consensus 180 d~~G~vv~l~~r~~~------~~~~~~~~~~~~Pa~~l~~~~~~~l~~~----a~~i~~al--g~~G~~~vEfivd~dG~ 247 (1080)
|+....-.....+.. ...+..-...++|+|-.++++.+.+.+. +.+-++.- .|.|....-++++++|
T Consensus 207 DG~s~~~mp~aQDHKRl~dgD~GpNTGgmGaY~paPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~- 285 (788)
T KOG0237|consen 207 DGYSVRPLPPAQDHKRLGDGDTGPNTGGMGAYAPAPVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDG- 285 (788)
T ss_pred cCcccccCCcccchhhhcCCCCCCCCCCccccccCCccCHHHHHHHHHHHhhHhhhHHHhcCCceeeEEeeeeEEecCC-
Confidence 865322111111110 0111122344789988888776655443 33444433 4568777889999888
Q ss_pred EEEEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEE
Q psy3968 248 FYFIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFR 326 (1080)
Q Consensus 248 ~~~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~ 326 (1080)
|.++|.|.|||. +.+++.....-||++.++..+.|+ |..+.+.-......+..+..--||++..++-. |+-+.
T Consensus 286 P~vLEfN~RFGDPEtQv~l~lLesDL~evi~a~~~~~-L~~~~i~w~~~sa~~VV~as~gYP~sy~KG~~-----It~~~ 359 (788)
T KOG0237|consen 286 PKVLEFNVRFGDPETQVLLPLLESDLAEVILACCNGR-LDTVDIVWSKKSAVTVVMASGGYPGSYTKGSI-----ITGLP 359 (788)
T ss_pred ccEEEEecccCCchhhhhHHHHHhHHHHHHHHHhhCC-ccccCccccccceEEEEEecCCCCCCCcCCcc-----cccCc
Confidence 999999999999 677766677789999999999887 65444332222222444445556666655432 22222
Q ss_pred cCCcceEEEcCC--ccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 327 SGEGMGIRLDGA--SAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 327 ~~~~~gvr~d~~--~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
.+..++.|+-.. ..+.+..++.+ +|+-.|++.+++.++|.+.++++++.+.+.|- ++||.+
T Consensus 360 ~~~~~~~rVFHAGTs~~ss~vvTNG--GRVLsVTA~~~~L~sA~e~Ayk~v~~I~Fsg~~yRkDI~~ 424 (788)
T KOG0237|consen 360 EADRPGTRVFHAGTSLDSSNVVTNG--GRVLSVTATGDDLESAAETAYKAVQVISFSGKFYRKDIAW 424 (788)
T ss_pred ccCCCcceEEeccccccccceEecC--ceEEEEEecCchHHHHHHHHHHHheEEeeccccccchhhh
Confidence 222233333211 23445566666 79999999999999999999999999999996 899986
No 95
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=99.92 E-value=3e-25 Score=266.69 Aligned_cols=206 Identities=12% Similarity=0.077 Sum_probs=152.0
Q ss_pred ChHHHHHHHHHHh--hccEEccc----ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHHHHhhhe--
Q psy3968 363 DLQSSCAKMNRAL--REFRVRGV----KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGT-- 434 (1080)
Q Consensus 363 t~~eA~~~a~ral--~~i~I~Gv----~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~-- 434 (1080)
+++...+.+.+.+ ....|.++ +.+|+...+.+.... ...+|+ |+..++.+.+....+++.+.+..+...
T Consensus 76 D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~--~~~v~i-~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~ 152 (564)
T TIGR00970 76 DFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAK--RATVHF-YNATSILFREVVFRASRAEVQAIATDGTK 152 (564)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCC--CCEEEE-EEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3443444444432 24567666 344555444443332 346777 787777666554444444433222221
Q ss_pred -eeec----------CCCCCCCCC----CCCCCCCCCCCCCC-CC-------CeeeeccccCccChHHHHHHHHHHHHHC
Q psy3968 435 -VLVN----------GPSTPLATP----LLPAEVTPPVPEIP-LG-------KLINTFDMAGLLKPRAAKLLIGAIREKH 491 (1080)
Q Consensus 435 -V~Vn----------g~~~p~~~~----~~~~~~~~~~~~~~-~G-------~~i~i~Dt~G~~~P~~~~~lv~~l~~~~ 491 (1080)
+... .|.|+|+++ .+++++..++..+. +| .+|+|+||+|.++|.+++++|+.+++.+
T Consensus 153 ~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~ 232 (564)
T TIGR00970 153 LVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNI 232 (564)
T ss_pred HHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhc
Confidence 1111 125777766 67777776666443 55 3899999999999999999999999988
Q ss_pred C---CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q psy3968 492 P---DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQ 568 (1080)
Q Consensus 492 p---~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~ 568 (1080)
| +++|++|||||+|||+||+++|++|||++||+|++|+|+|+||++||+++++|+.+|++|++|++.|.++++++++
T Consensus 233 ~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~GERaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~v~~ 312 (564)
T TIGR00970 233 AEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNGERTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRTVEY 312 (564)
T ss_pred CcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCCccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 6 4679999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHh
Q psy3968 569 TRQ 571 (1080)
Q Consensus 569 ~~~ 571 (1080)
+.+
T Consensus 313 ~~~ 315 (564)
T TIGR00970 313 CNK 315 (564)
T ss_pred HhC
Confidence 643
No 96
>PRK06849 hypothetical protein; Provisional
Probab=99.92 E-value=2.9e-24 Score=251.51 Aligned_cols=241 Identities=15% Similarity=0.182 Sum_probs=178.9
Q ss_pred cchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHH
Q psy3968 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVA 82 (1080)
Q Consensus 3 ~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~ 82 (1080)
.+++.+|++|.++++......| ++.|+++++++++|+|+|+.+.....+...+.+ +.++.+++++.++++.++||..
T Consensus 43 ~~s~~~d~~~~~p~p~~d~~~~--~~~L~~i~~~~~id~vIP~~e~~~~~a~~~~~l-~~~~~v~~~~~~~~~~~~DK~~ 119 (389)
T PRK06849 43 RFSRAVDGFYTIPSPRWDPDAY--IQALLSIVQRENIDLLIPTCEEVFYLSHAKEEL-SAYCEVLHFDFELLLLLHNKWE 119 (389)
T ss_pred HHHHhhhheEEeCCCCCCHHHH--HHHHHHHHHHcCCCEEEECChHHHhHHhhhhhh-cCCcEEEcCCHHHHHHhhCHHH
Confidence 4578899999985433222345 689999999999999999987331111112222 2467888999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 83 ARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY-GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 83 ~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i-gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
++++++++|||+|++ ..+++.+++.++..+. +||+|+||..|+||.|+.++.+.+.+.... ...+.++
T Consensus 120 ~~~~~~~~GipvP~t--~~v~~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~---------~~~~~~~ 188 (389)
T PRK06849 120 FAEQARSLGLSVPKT--YLITDPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELP---------ISKDNPW 188 (389)
T ss_pred HHHHHHHcCCCCCCE--EEeCCHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhcccc---------cCCCCCe
Confidence 999999999999998 5688999998887776 999999999999999999998854433211 0113469
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
++||||+| .++++..+.. +|+++....................|. ..+++.+.+.++++++|++|.+++||+
T Consensus 189 ivQe~I~G-~e~~~~~~~~-~G~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~l~~~G~~~~df~ 260 (389)
T PRK06849 189 VMQEFIQG-KEYCSYSIVR-SGELRAHSCYKPEYCAGSGAQIAFQPI------NHPRIEEFVTHFVKELNYTGQISFDFI 260 (389)
T ss_pred EEEEEecC-CeEEEEEEEE-CCEEEEEEEeeccccCCCCceeEeEEC------CcHHHHHHHHHHHHhcCceeEEEEEEE
Confidence 99999999 6887777764 567655422111111111111112222 135899999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchh
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTE 265 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e 265 (1080)
.+++|++|+||||||++++.+++.
T Consensus 261 ~~~~g~~~~iEiNpR~~~g~~l~~ 284 (389)
T PRK06849 261 ETENGDAYPIECNPRTTSGLHLFD 284 (389)
T ss_pred ECCCCCEEEEEecCCCCceeEEcC
Confidence 998899999999999999877653
No 97
>PRK03739 2-isopropylmalate synthase; Validated
Probab=99.92 E-value=6.2e-25 Score=263.42 Aligned_cols=209 Identities=16% Similarity=0.116 Sum_probs=157.0
Q ss_pred cCChHHHHHHHH-HHh--hccEEccc----ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHHHHhhh
Q psy3968 361 AADLQSSCAKMN-RAL--REFRVRGV----KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLG 433 (1080)
Q Consensus 361 G~t~~eA~~~a~-ral--~~i~I~Gv----~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla 433 (1080)
++...++++++. +.+ ....+.++ +.+|+...+.+.... ...++. |+..++.+.+.+...++.+.+.....
T Consensus 77 s~~e~e~v~~i~~~~~~~~~~~i~~l~r~~~~di~~a~~a~~~~~--~~~v~i-~~~~Sd~h~~~~l~~t~ee~l~~~~~ 153 (552)
T PRK03739 77 SQTDFDFVRELIEEGLIPDDVTIQVLTQAREHLIERTFEALEGAK--RAIVHL-YNSTSPLQRRVVFGKDRDGIKAIAVD 153 (552)
T ss_pred ChHHHHHHHHHHHhcCCCCCCEEEEEeccchhHHHHHHHHhcCCC--CCEEEE-EEcCCHHHHHHHhCCCHHHHHHHHHH
Confidence 333335666653 323 34556665 455666555554332 345777 78877777765554555553333222
Q ss_pred eee---ecC-------CCCCCCCC----CCCCCCCCCCCCCC----CC-C---eeeeccccCccChHHHHHHHHHHHHHC
Q psy3968 434 TVL---VNG-------PSTPLATP----LLPAEVTPPVPEIP----LG-K---LINTFDMAGLLKPRAAKLLIGAIREKH 491 (1080)
Q Consensus 434 ~V~---Vng-------~~~p~~~~----~~~~~~~~~~~~~~----~G-~---~i~i~Dt~G~~~P~~~~~lv~~l~~~~ 491 (1080)
.+. -.| +.|+|+++ .+++++.+++..+. +| + +|+|+||+|+++|.+++++++.+++.+
T Consensus 154 ~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~ 233 (552)
T PRK03739 154 GARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNL 233 (552)
T ss_pred HHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhC
Confidence 221 111 55777666 77777777666432 44 2 699999999999999999999999998
Q ss_pred C---CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q psy3968 492 P---DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQ 568 (1080)
Q Consensus 492 p---~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~ 568 (1080)
| +++|++|||||+|||+||+++|+++||++||+|++|+|+|+||++||+++++|+.+|++|++|+++|.++++++++
T Consensus 234 ~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG~GERaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~~v~~ 313 (552)
T PRK03739 234 ARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGERTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRRTVEY 313 (552)
T ss_pred CcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCcCcccccChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 7 7899999999999999999999999999999999999999999999999999998999999999999999999988
Q ss_pred HHhc
Q psy3968 569 TRQL 572 (1080)
Q Consensus 569 ~~~~ 572 (1080)
+.+.
T Consensus 314 ~~~~ 317 (552)
T PRK03739 314 CNQL 317 (552)
T ss_pred HhCC
Confidence 6443
No 98
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=99.92 E-value=3.4e-25 Score=244.59 Aligned_cols=128 Identities=23% Similarity=0.327 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|+|++.++.+++++..++..+. +| ++|+|+||+|.++|.+++++++.+++.+| ++|++|+|||+|||+||+++|+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~a 206 (259)
T cd07939 128 VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRA 206 (259)
T ss_pred EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHh
Confidence 5889999988888888877655 88 89999999999999999999999999996 999999999999999999999999
Q ss_pred CCCEEeeccCCCCCCCCCCcHHHHHHHHhcC-CCCCCCCHHHHHHHHHHHHH
Q psy3968 518 GADVVDVAVDSMSGMTSQPSMGAVVASLQGS-DIDTGLDLKDISAYSAYWEQ 568 (1080)
Q Consensus 518 G~~~vd~s~~glg~~~g~~~~e~~v~~l~~~-g~~~~~d~~~l~~~~~~~~~ 568 (1080)
||++||+|++|||+++||++||+++.+|+.+ |+++++|+++|.++++++++
T Consensus 207 G~~~vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 207 GATHVSVTVNGLGERAGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred CCCEEEEecccccccccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 99999999999999999875
No 99
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=99.92 E-value=2.5e-25 Score=246.88 Aligned_cols=128 Identities=27% Similarity=0.373 Sum_probs=121.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCC--CceEEeeCCCCchhHHHHHHHH
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPD--IPIHIHTHDTSGAGVASMIACA 515 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~--~~i~~H~H~t~Gla~an~l~Ai 515 (1080)
|+||+.++.+++++..++..+. +| ++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi 211 (268)
T cd07940 132 FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAV 211 (268)
T ss_pred EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHH
Confidence 6899999988888888887765 88 899999999999999999999999999986 9999999999999999999999
Q ss_pred HcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCC----CCCCCCHHHHHHHHHHHH
Q psy3968 516 EAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSD----IDTGLDLKDISAYSAYWE 567 (1080)
Q Consensus 516 ~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g----~~~~~d~~~l~~~~~~~~ 567 (1080)
++||++||+|++|||+++||++||+++.+|+.+| ++|++|+++|.+++++++
T Consensus 212 ~aG~~~iD~s~~GlG~~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~ 267 (268)
T cd07940 212 EAGARQVECTINGIGERAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVS 267 (268)
T ss_pred HhCCCEEEEEeeccccccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876 999999999999999986
No 100
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.92 E-value=4e-23 Score=233.31 Aligned_cols=223 Identities=19% Similarity=0.291 Sum_probs=173.0
Q ss_pred cCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy3968 37 NDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY 115 (1080)
Q Consensus 37 ~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i 115 (1080)
.++|+|++.. |...|+..+...++..|++++|+++.++.++.||..++++++ .|||+|++. .+.+.. ....+
T Consensus 52 ~~~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~--~~~~~~----~~~~l 124 (299)
T PRK14571 52 KSFDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFV--EIKEFM----KTSPL 124 (299)
T ss_pred cCCCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEE--EEechh----hhhhc
Confidence 5789999974 456688889999999999999999999999999999999998 589999983 344322 23568
Q ss_pred CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCc-EEEEEeeecc
Q psy3968 116 GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGN-VVHLYERDCS 194 (1080)
Q Consensus 116 gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~-vv~l~~r~~~ 194 (1080)
+||+|+||..|+||+||.+|++.+|+.++++.+... .+.++||+||+| +|+++.+++++.+. ++.+.+....
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E~sv~vl~~~~~~~vl~~~e~~~~ 197 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIPG-REMTVSILETEKGFEVLPILELRPK 197 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEccccc-eEEEEEEEcCCCCeeeeceEEEecC
Confidence 999999999999999999999999999988765431 357999999999 89999999875433 3333221100
Q ss_pred -----cccc--ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCcc--c--
Q psy3968 195 -----VQRR--HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHT--V-- 263 (1080)
Q Consensus 195 -----~~~~--~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~--~-- 263 (1080)
.... ........|+ .++++..+++.+.+.++++++|++|.+++||+++ +|++||+|||++++-... +
T Consensus 198 ~~~~~~~~k~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~~ 275 (299)
T PRK14571 198 RRFYDYVAKYTKGETEFILPA-PLNPEEERLVKETALKAFVEAGCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLPA 275 (299)
T ss_pred CCccccccccCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHHH
Confidence 0000 1112234576 5889999999999999999999999999999997 567999999999986322 1
Q ss_pred hhcccCCCHHHH
Q psy3968 264 TEEITGVDLVQS 275 (1080)
Q Consensus 264 ~e~~tGvdl~~~ 275 (1080)
.-...|+++.++
T Consensus 276 ~~~~~G~~~~~l 287 (299)
T PRK14571 276 SAKAGGIEFEEL 287 (299)
T ss_pred HHHHcCCCHHHH
Confidence 223567776663
No 101
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=99.91 E-value=4.1e-25 Score=245.32 Aligned_cols=131 Identities=46% Similarity=0.686 Sum_probs=118.8
Q ss_pred CCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEE
Q psy3968 445 ATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522 (1080)
Q Consensus 445 ~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~v 522 (1080)
.++.+++++..++..+. +| ++|+|+||+|.++|.+++++++.++++++ ++|++|+|||+|||+||+++|+++||++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~v 221 (275)
T cd07937 143 SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIV 221 (275)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 34455555555555443 67 79999999999999999999999999995 99999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCC
Q psy3968 523 DVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPF 576 (1080)
Q Consensus 523 d~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~ 576 (1080)
|+|++|||+|+||++||+++++|+.+|+++++|++.|.++++++++++++|.+|
T Consensus 222 d~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~~~~~~~ 275 (275)
T cd07937 222 DTAISPLSGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVRKKYAPF 275 (275)
T ss_pred EEecccccCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999988654
No 102
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.91 E-value=5.4e-23 Score=261.11 Aligned_cols=233 Identities=24% Similarity=0.307 Sum_probs=184.6
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCC------CHH-HH
Q psy3968 37 NDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPIT------TTE-EA 108 (1080)
Q Consensus 37 ~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~------s~e-e~ 108 (1080)
.++|.++|. +|...|+..+...|+..|++++|+++.+..++.||..+|++++++|||+|+|. .++ +.+ .+
T Consensus 525 ~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~--~~~~~~~~~~~~~~~ 602 (809)
T PRK14573 525 AKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQ--PLTLAGWKREPELCL 602 (809)
T ss_pred ccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhcccChHHHH
Confidence 469999997 47778999999999999999999999999999999999999999999999984 333 222 23
Q ss_pred HHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEE-
Q psy3968 109 MEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH- 187 (1080)
Q Consensus 109 ~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~- 187 (1080)
.++.++++||+||||..+++|.|+.+|++.+||.++++.++.. +++++||+|+.|.+|++|.+++++.+..+.
T Consensus 603 ~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~~~~~ 676 (809)
T PRK14573 603 AHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSAYVIA 676 (809)
T ss_pred HHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCceEec
Confidence 4567789999999999999999999999999999999887642 568999999887799999999886653321
Q ss_pred -EEeeecc-----ccccc----cE-EEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEecc
Q psy3968 188 -LYERDCS-----VQRRH----QK-VVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNAR 256 (1080)
Q Consensus 188 -l~~r~~~-----~~~~~----~~-~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR 256 (1080)
..++.+. +...+ .. .....|+ .+++++.+++++++.+++++||++|.++|||+++++|++||+|||||
T Consensus 677 ~~~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~g~~yv~EiNt~ 755 (809)
T PRK14573 677 GPHERRGSGGFIDYQEKYGLSGKSSAQIVFDL-DLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEEGNFWLSEMNPI 755 (809)
T ss_pred cceEEccCCCeeCchhcccCCCCCceEEecCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCCCCEEEEEeeCC
Confidence 1222111 11111 11 1223466 69999999999999999999999999999999998899999999999
Q ss_pred CCCCc----cchhcccCCCHHHHHHH
Q psy3968 257 LQVEH----TVTEEITGVDLVQSQIR 278 (1080)
Q Consensus 257 ~~g~~----~~~e~~tGvdl~~~~l~ 278 (1080)
+|-+. +..-...|+++.++.-+
T Consensus 756 PG~t~~s~~p~~~~~~G~~~~~li~~ 781 (809)
T PRK14573 756 PGMTEASPFLTAFVRKGWTYEQIVHQ 781 (809)
T ss_pred CCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 98632 12233567776555443
No 103
>PF02785 Biotin_carb_C: Biotin carboxylase C-terminal domain; InterPro: IPR005482 Acetyl-CoA carboxylase is found in all animals, plants, and bacteria and catalyzes the first committed step in fatty acid synthesis. It is a multicomponent enzyme containing a biotin carboxylase activity, a biotin carboxyl carrier protein, and a carboxyltransferase functionality. The "B-domain" extends from the main body of the subunit where it folds into two alpha-helical regions and three strands of beta-sheet. Following the excursion into the B-domain, the polypeptide chain folds back into the body of the protein where it forms an eight-stranded antiparallel beta-sheet. In addition to this major secondary structural element, the C-terminal domain also contains a smaller three-stranded antiparallel beta-sheet and seven alpha-helices []. ; GO: 0016874 ligase activity; PDB: 1W96_B 1W93_A 3VA7_A 2GPW_A 2W70_A 3G8D_A 1DV2_A 2VR1_B 2J9G_B 1DV1_A ....
Probab=99.91 E-value=5e-25 Score=207.20 Aligned_cols=107 Identities=42% Similarity=0.777 Sum_probs=102.0
Q ss_pred EeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcc
Q psy3968 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG 382 (1080)
Q Consensus 303 ~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~G 382 (1080)
|||+|+|||.++|.|++|+|..+++|+++|+|+|++ ++.|..|+++|||++||||++|.||++|+++|.+||+++.|+|
T Consensus 1 E~Ri~AEdP~~~F~Ps~G~i~~~~~P~g~gvRvDt~-~~~G~~v~~~yDsmiaKliv~g~~R~~Ai~~l~~AL~e~~I~G 79 (107)
T PF02785_consen 1 EARIYAEDPANGFLPSPGRITRYSPPGGPGVRVDTG-VYSGYEVSPYYDSMIAKLIVHGPDREEAIARLRRALAETVIEG 79 (107)
T ss_dssp EEEEESBETTTTTEBSSEEESEEE-SSSTTEEEEES-ESTTCEE-SSSSSEEEEEEEEESSHHHHHHHHHHHHHHHEEES
T ss_pred CcEEeecCCCCCCcCCcEEEeEEECCCCCCeeEEec-CccccccCCCchhhhhhheeeccchHHHHHHHHhhcceEEEEC
Confidence 699999999999999999999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcccccccCCceeeeeec
Q psy3968 383 VKTNIPFLLNVLTNQKFVNGAVDTYFID 410 (1080)
Q Consensus 383 v~tni~~l~~il~~~~F~~g~~~T~fie 410 (1080)
++||++||+++|.|++|++|+++|+|||
T Consensus 80 v~TNi~fl~~ll~~~~f~~g~~~T~~le 107 (107)
T PF02785_consen 80 VKTNIPFLRALLAHPEFRSGTYDTGFLE 107 (107)
T ss_dssp SSHSHHHHHHHHTSHHHHTT-SSTTHHH
T ss_pred ccCCHHHHHHHhCCcccccCCCeeeccC
Confidence 9999999999999999999999999986
No 104
>PRK14847 hypothetical protein; Provisional
Probab=99.91 E-value=4.5e-24 Score=237.56 Aligned_cols=215 Identities=15% Similarity=0.106 Sum_probs=162.3
Q ss_pred ecCChHHHHHHHHHHh---hccEEccc----ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHH----
Q psy3968 360 HAADLQSSCAKMNRAL---REFRVRGV----KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKL---- 428 (1080)
Q Consensus 360 ~G~t~~eA~~~a~ral---~~i~I~Gv----~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L---- 428 (1080)
.+++..++++++.+.. ....|.++ +.+|+.-.+...... ...+|. |+-.++.+.+.+...++.+.+
T Consensus 78 ~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~--~~~Vhi-~~p~Sd~h~~~kl~~s~~~vl~~~~ 154 (333)
T PRK14847 78 ASQTDFDFVRKLIDERRIPDDVTIEALTQSRPDLIARTFEALAGSP--RAIVHL-YNPIAPQWRRIVFGMSRAEIKEIAL 154 (333)
T ss_pred CCHHHHHHHHHHHHhCCCCCCcEEEEEecCcHHHHHHHHHHhCCCC--CCEEEE-EecCCHHHHHHHhCCCHHHHHHHHH
Confidence 3444455565554432 24566664 677777666665544 566888 788887777655444444422
Q ss_pred --HHhhhee---------eecCCCCCCCCCCCCCCCCCCCCCCC-------CC-CeeeeccccCccChHHHHHHHHHHHH
Q psy3968 429 --LNYLGTV---------LVNGPSTPLATPLLPAEVTPPVPEIP-------LG-KLINTFDMAGLLKPRAAKLLIGAIRE 489 (1080)
Q Consensus 429 --~~yla~V---------~Vng~~~p~~~~~~~~~~~~~~~~~~-------~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~ 489 (1080)
..|.... .| -|+.....+.+++++..++..+. .| ++|+|+||+|.++|.+++++|+.|++
T Consensus 155 ~~v~~Ak~~~~~~~g~~~~V-~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~ 233 (333)
T PRK14847 155 AGTRQIRALADANPGTQWIY-EYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHR 233 (333)
T ss_pred HHHHHHHHhccccCCCceEE-EEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHH
Confidence 2232221 11 13444455666666665554321 24 68999999999999999999999998
Q ss_pred HCC---CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q psy3968 490 KHP---DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYW 566 (1080)
Q Consensus 490 ~~p---~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~ 566 (1080)
+++ +++|++|||||+|||+||+++|+++||++||+|++|+|+|+||++||+++++|+..|+++++|++.|.++++++
T Consensus 234 ~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~GERaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v 313 (333)
T PRK14847 234 SLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQGIASGLDFRDMAALRACV 313 (333)
T ss_pred hcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcCCccccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 875 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCc
Q psy3968 567 EQTRQLYAPFEC 578 (1080)
Q Consensus 567 ~~~~~~~~~~~~ 578 (1080)
++..+...|.+.
T Consensus 314 ~~~sg~~v~~~k 325 (333)
T PRK14847 314 SECNQLPIDVFH 325 (333)
T ss_pred HHHhCCCCCCCC
Confidence 999887766654
No 105
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=99.91 E-value=3.4e-24 Score=237.16 Aligned_cols=123 Identities=24% Similarity=0.365 Sum_probs=112.4
Q ss_pred CCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEe
Q psy3968 446 TPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVD 523 (1080)
Q Consensus 446 ~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd 523 (1080)
++.+++.+...+..+. +| ++|+|+||+|.++|.+++++++.++++++.++|++|+|||+|||+||+++|+++||++||
T Consensus 136 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd 215 (263)
T cd07943 136 HMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRID 215 (263)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEE
Confidence 3456666666666544 78 899999999999999999999999999965699999999999999999999999999999
Q ss_pred eccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q psy3968 524 VAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQ 568 (1080)
Q Consensus 524 ~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~ 568 (1080)
+|++|||+|+||++||+++.+|+..|+++++|+++|.++++++..
T Consensus 216 ~s~~GlG~~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 216 GSLAGLGAGAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred eecccccCCcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999754
No 106
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.90 E-value=8.7e-23 Score=218.55 Aligned_cols=298 Identities=23% Similarity=0.310 Sum_probs=220.5
Q ss_pred CCCHHHHHHHHHHc--CCCE-EEeCCCcccccHHHHHHHHHcCCcEeCCcHH-HHHHhcCHHHHHHHHHHCCCCCCCCCC
Q psy3968 24 YLNIPEIIRVAKEN--DVDA-IHPGYGFLSERSDFAQAVLDAGIRFIGPSPY-VVQQMGDKVAARQAAIDSGVPIVPGTP 99 (1080)
Q Consensus 24 yld~e~Ii~~a~~~--~iDa-Vipg~g~lsE~~~~a~~l~~~gi~~iGps~e-ai~~~~DK~~~r~~l~~~GIpvp~~~~ 99 (1080)
-+|.+.|++++.+. .+|+ ++|+.||-.++. --..++.+.|++++ ....+.+|..+.+.+...|+|.|+...
T Consensus 67 ~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~~-----~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~~ 141 (389)
T COG2232 67 NLDEQKLIEAAEDLAEDVDAPIIPFSGFEALRT-----SGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEKK 141 (389)
T ss_pred CCCHHHHHHHHHhhhhhcceeeeeccccccccc-----cCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhhh
Confidence 45778899998874 6888 788777644221 12357788899998 899999999999999999999997631
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEE
Q psy3968 100 GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLG 179 (1080)
Q Consensus 100 ~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~ 179 (1080)
. + ....--+++|+||..|+||. +.++.-.++.. ...+++|+||+| +++++++++
T Consensus 142 --~---e----~~~~gekt~IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is 195 (389)
T COG2232 142 --I---E----PLEEGEKTLILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFIS 195 (389)
T ss_pred --h---h----hhhhcceeeEEeeccCCCce-eeecccccccC---------------CcceehhhhcCC-ceeEEEEEe
Confidence 1 1 12223468999999999996 33332222211 147999999999 999999999
Q ss_pred ecCCcEEEEEeeeccc-----cccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEe
Q psy3968 180 DKAGNVVHLYERDCSV-----QRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254 (1080)
Q Consensus 180 d~~G~vv~l~~r~~~~-----~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvN 254 (1080)
++.......+.+.... ...+...+..+|.+.. ..+++.++|..++..||+.|...|||++.+.| +|+||||
T Consensus 196 ~g~~a~~la~N~QiI~~~~~~~~~f~Y~GNlTP~~~~---~~ee~e~la~elV~~lgL~GsnGVDfvl~d~g-pyViEVN 271 (389)
T COG2232 196 NGSDALTLAVNDQIIDGLRGEYSQFVYKGNLTPFPYE---EVEEAERLAEELVEELGLVGSNGVDFVLNDKG-PYVIEVN 271 (389)
T ss_pred cCcceEEEEEeeeeecccccccccceeccCcCCCcch---hhHHHHHHHHHHHHHhccccccccceEeecCC-cEEEEec
Confidence 8775544433332221 1112334556676432 22789999999999999999999999999777 9999999
Q ss_pred ccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEE
Q psy3968 255 ARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIR 334 (1080)
Q Consensus 255 pR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr 334 (1080)
||++|+...++.++|+|++++++++..|+ ++ +.+.++++++...+|+.... +.+ .+ -..++|
T Consensus 272 PR~qGt~e~iE~s~giNl~~lHi~af~G~-Lp------Er~kpr~~a~krILyap~~v--~v~---~l------~~~~~~ 333 (389)
T COG2232 272 PRIQGTLECIERSSGINLFRLHIQAFDGE-LP------ERPKPRGYACKRILYAPRTV--RVP---IL------KLSWTH 333 (389)
T ss_pred CcccchHHHHHHhcCCCHHHHHHHHhcCc-Cc------CCCCcceeEEeEEEecccee--ecc---cc------cccccc
Confidence 99999999999999999999999999998 54 35677899999999864321 111 00 112233
Q ss_pred EcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccE
Q psy3968 335 LDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFR 379 (1080)
Q Consensus 335 ~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~ 379 (1080)
| .+.+|.++.++ ..+++|+|.+.|++.|.+.+.|.+..+.
T Consensus 334 -D--iP~~Gtviekg--ePl~sviA~~nt~~~a~~~~er~~ervk 373 (389)
T COG2232 334 -D--IPRPGTVIEKG--EPLCSVIASSNTRSGAESMAERLAERVK 373 (389)
T ss_pred -c--CCCCCcccCCC--CceeeeeeccCCHHHHHHHHHHHHHHHH
Confidence 2 35788888877 7899999999999999998888887644
No 107
>KOG2368|consensus
Probab=99.90 E-value=1.5e-25 Score=226.65 Aligned_cols=179 Identities=21% Similarity=0.354 Sum_probs=153.9
Q ss_pred hhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccCCcch----HHHHHHHhhheeeecCCCCCCCCCCCC
Q psy3968 375 LREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKN----RAQKLLNYLGTVLVNGPSTPLATPLLP 450 (1080)
Q Consensus 375 l~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~d----ra~~L~~yla~V~Vng~~~p~~~~~~~ 450 (1080)
..++.|.|- .++.|...+++++ |+++.. ++.+... ....++.|++++. +|||+|.+.|
T Consensus 107 a~EvavFga-----------ASe~FslkNiNct-iees~~--rf~~v~kaA~~~ni~vRGYVScvv----GCPyeG~v~P 168 (316)
T KOG2368|consen 107 AEEVAVFGA-----------ASEAFSLKNINCT-IEESLK--RFMEVLKAAQEHNIRVRGYVSCVV----GCPYEGAVQP 168 (316)
T ss_pred ceeEEeeeh-----------hhhhhhhccCCcc-HHHHHH--HHHHHHHHHHHcCCccceEEEEEe----cCCccCCcCH
Confidence 556666554 3457878888885 555433 2222222 2236888999988 9999999999
Q ss_pred CCCCCCCCCCC-CCC-eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCC
Q psy3968 451 AEVTPPVPEIP-LGK-LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528 (1080)
Q Consensus 451 ~~~~~~~~~~~-~G~-~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~g 528 (1080)
..+..++..+. ||| +|+|.||.|+.||..+.+++.++.+.+|.-.+.+|||||+|.|+||.|.+++.|++.+|.|+.|
T Consensus 169 ~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDSsvaG 248 (316)
T KOG2368|consen 169 SKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDSSVAG 248 (316)
T ss_pred HHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhhhccc
Confidence 99999999887 995 9999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCCC------CCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHh
Q psy3968 529 MSGMT------SQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQ 571 (1080)
Q Consensus 529 lg~~~------g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 571 (1080)
||||| ||.+||+++++|+++|++||+||++|.++++|+.+..+
T Consensus 249 LGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~alg 297 (316)
T KOG2368|consen 249 LGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALG 297 (316)
T ss_pred cCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhC
Confidence 99996 78899999999999999999999999999999988643
No 108
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=99.90 E-value=2.1e-24 Score=238.55 Aligned_cols=130 Identities=18% Similarity=0.174 Sum_probs=118.0
Q ss_pred CCCCCCCC----CCCCCCCCCCCCCCC-C---C-C---eeeeccccCccChHHHHHHHHHHHHHCC---CCceEEeeCCC
Q psy3968 439 GPSTPLAT----PLLPAEVTPPVPEIP-L---G-K---LINTFDMAGLLKPRAAKLLIGAIREKHP---DIPIHIHTHDT 503 (1080)
Q Consensus 439 g~~~p~~~----~~~~~~~~~~~~~~~-~---G-~---~i~i~Dt~G~~~P~~~~~lv~~l~~~~p---~~~i~~H~H~t 503 (1080)
+|.|||++ +.+++++..++..+. . | + +|+|+||+|.++|.+++++++.+++.+| +++|++|+|||
T Consensus 140 ~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd 219 (284)
T cd07942 140 DWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHND 219 (284)
T ss_pred eEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCC
Confidence 35789988 778888877776542 2 4 3 8999999999999999999999999987 46699999999
Q ss_pred CchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q psy3968 504 SGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQ 568 (1080)
Q Consensus 504 ~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~ 568 (1080)
+|||+||+++|+++||++||+|++|+|+|+||++||+++.+|+.+|++|++|++.|.++++++++
T Consensus 220 ~G~a~AN~laA~~aG~~~id~~~~g~GeRaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 220 RGTGVAAAELALLAGADRVEGTLFGNGERTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred CchHHHHHHHHHHhCCCEEEeeCccCCccccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999763
No 109
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.90 E-value=3.6e-23 Score=215.95 Aligned_cols=177 Identities=26% Similarity=0.447 Sum_probs=131.7
Q ss_pred HhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHh
Q psy3968 76 QMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAA 155 (1080)
Q Consensus 76 ~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~ 155 (1080)
++.||..|+++++++|||+|++ ..+.+.+++.+++..++||+|+||..|+||+|++++++.+++.++++.+.....
T Consensus 1 ~~~dK~~~~~~~~~~gv~~P~~--~~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~-- 76 (184)
T PF13535_consen 1 RCNDKYRMRELLKKAGVPVPKT--RIVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP-- 76 (184)
T ss_dssp -TCCHHHHHHHHHHHTS----E--EEECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence 4789999999999999999998 579999999999999999999999999999999999999999999998876432
Q ss_pred cCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecccc--ccc---cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q psy3968 156 FGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQ--RRH---QKVVEIAPAPHLDINVRNKMTDLAVKLAKHV 230 (1080)
Q Consensus 156 ~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~--~~~---~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al 230 (1080)
.....+++|+||+| .++++.++.. +|.++.+...+.... ... .......+. +....+++.+.+.++++++
T Consensus 77 ~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 151 (184)
T PF13535_consen 77 LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGISRYVRQSPGHFSGGVPTGYSVPS---EPPLPEELRDLARKLLRAL 151 (184)
T ss_dssp -HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEEEEEEEEETCCCSSSEEEEEEES-----CEHHHHHHHHHHHHHHHH
T ss_pred cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEEEEEecccccccccceeeeeeccc---ccccHHHHHHHHHHHHHHc
Confidence 12468999999999 8999999988 777755432222221 111 122223232 2234489999999999999
Q ss_pred CC-cceEEEEEEEcCCCCEEEEEEeccCCCCc
Q psy3968 231 GY-SNAGTVEFLCDESGQFYFIEVNARLQVEH 261 (1080)
Q Consensus 231 g~-~G~~~vEfivd~dG~~~~iEvNpR~~g~~ 261 (1080)
|+ .|++++||+++++|++||||||||++|.+
T Consensus 152 g~~~G~~~id~~~~~~g~~~~iEiN~R~~G~~ 183 (184)
T PF13535_consen 152 GYRNGFFHIDFIVDPDGELYFIEINPRFGGGS 183 (184)
T ss_dssp T--SEEEEEEEEEETCCEEEEEEEESS--STT
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECccCCCCC
Confidence 99 79999999999999899999999999864
No 110
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=99.90 E-value=8.3e-24 Score=199.40 Aligned_cols=107 Identities=45% Similarity=0.857 Sum_probs=104.5
Q ss_pred EeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcc
Q psy3968 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG 382 (1080)
Q Consensus 303 ~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~G 382 (1080)
+||+|+|||.++|.|++|+|+.+++|+++|+|+|++ +++|+.|+++|||++||+|++|+||++|+++|.++|+++.|+|
T Consensus 1 E~Ri~AEdp~~~F~P~~G~i~~~~~p~g~gvR~Dt~-~~~G~~v~~~yDsmlAKliv~g~~R~~A~~rl~~aL~e~~i~G 79 (107)
T smart00878 1 ECRINAEDPANGFLPSPGRITRYRFPGGPGVRVDSG-VYEGYEVPPYYDSMIAKLIVHGETREEAIARLRRALDEFRIEG 79 (107)
T ss_pred CeEEEeeCCCCCcccCCCEEeEEEcCCCCCEEEEcc-CcCCCCcCcchhhhceEEEEEcCCHHHHHHHHHHHHHhCEEEC
Confidence 589999999999999999999999999999999997 7999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHhcccccccCCceeeeeec
Q psy3968 383 VKTNIPFLLNVLTNQKFVNGAVDTYFID 410 (1080)
Q Consensus 383 v~tni~~l~~il~~~~F~~g~~~T~fie 410 (1080)
++||++||+++|.+++|++|+++|+||+
T Consensus 80 v~TN~~~l~~ll~~~~f~~g~~~T~~l~ 107 (107)
T smart00878 80 VKTNIPFLRALLRHPDFRAGDVDTGFLE 107 (107)
T ss_pred ccCCHHHHHHHhcCHhhhcCcccccccC
Confidence 9999999999999999999999999985
No 111
>KOG2367|consensus
Probab=99.89 E-value=3.4e-23 Score=230.06 Aligned_cols=218 Identities=16% Similarity=0.158 Sum_probs=180.2
Q ss_pred EEEecCChHHHHHHHHHHhhccEEccc----ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHHHHhh
Q psy3968 357 VIAHAADLQSSCAKMNRALREFRVRGV----KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYL 432 (1080)
Q Consensus 357 Via~G~t~~eA~~~a~ral~~i~I~Gv----~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yl 432 (1080)
-.+.-.+++.....+.+.=....|.++ ..+|..-.+.+.... +.++|| |+.+++.+++++..+++.+.+..++
T Consensus 101 P~aSe~~~~~~~~i~k~~g~~~~I~~l~rc~~~di~~tvEAl~~aK--r~~Vh~-~~aTSd~~rey~~~kskeevi~~Av 177 (560)
T KOG2367|consen 101 PVASEQDFEDCKTIAKTLGYVPVICTLIRCHMDDIERTVEALKYAK--RPRVHV-FIATSDIHREYKLKKSKEEVIESAV 177 (560)
T ss_pred cccCcchHHHHHHHHHhCCCCceEEEeeccchHHHHHHHHHhhccC--cceEEE-EecccHHHHHHHhcccHHHHHHHHH
Confidence 334445666666666654445667776 577888888888888 889999 9999998888877666666555554
Q ss_pred heee---ecC-----CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCC---CCceEEe
Q psy3968 433 GTVL---VNG-----PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP---DIPIHIH 499 (1080)
Q Consensus 433 a~V~---Vng-----~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p---~~~i~~H 499 (1080)
..+. --| |+|...++.+.++.+.+...+. +| .+++|+||+|+.+|.+.++||+.++.+.| ++-|+.|
T Consensus 178 e~ikfvkslg~~~ieFSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~H 257 (560)
T KOG2367|consen 178 EVIKFVKSLGKWDIEFSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTH 257 (560)
T ss_pred HHHHHHHhcccceEEECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEe
Confidence 3331 112 6888888888888888777554 89 89999999999999999999999999887 5679999
Q ss_pred eCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCC---CCCCCCHHHHHHHHHHHHHHHhccCCC
Q psy3968 500 THDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSD---IDTGLDLKDISAYSAYWEQTRQLYAPF 576 (1080)
Q Consensus 500 ~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g---~~~~~d~~~l~~~~~~~~~~~~~~~~~ 576 (1080)
||||+|+|+||++.+++||||+||+|++|+|||+||.++++++++|.-.| +...+|+..|.++.+.++++.+.+.|+
T Consensus 258 cHND~G~a~Ant~~g~~AGA~~VE~~i~GiGERtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~v~p 337 (560)
T KOG2367|consen 258 CHNDLGCATANTELGLLAGARQVEVTINGIGERTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGINVPP 337 (560)
T ss_pred ecCCccHHHHHHHHHhhcCcceEEEEeeccccccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999888 778899999999999999987776665
Q ss_pred C
Q psy3968 577 E 577 (1080)
Q Consensus 577 ~ 577 (1080)
.
T Consensus 338 ~ 338 (560)
T KOG2367|consen 338 H 338 (560)
T ss_pred C
Confidence 4
No 112
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=99.89 E-value=2.8e-23 Score=229.49 Aligned_cols=106 Identities=24% Similarity=0.285 Sum_probs=100.6
Q ss_pred CC-C-eeeeccccCccCh-------HHHHHHHHHHHHH--CCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCC
Q psy3968 462 LG-K-LINTFDMAGLLKP-------RAAKLLIGAIREK--HPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMS 530 (1080)
Q Consensus 462 ~G-~-~i~i~Dt~G~~~P-------~~~~~lv~~l~~~--~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg 530 (1080)
.| + +|+|+||+|.++| .+++++++.+++. +|+++|++|+|||+|||+||+++|+++||++||+|++|||
T Consensus 161 ~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlG 240 (279)
T cd07947 161 SGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIG 240 (279)
T ss_pred CCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 68 6 7999999999998 6899999999998 5567899999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHhcC-CCCCCCCHHHHHHHHHHHH
Q psy3968 531 GMTSQPSMGAVVASLQGS-DIDTGLDLKDISAYSAYWE 567 (1080)
Q Consensus 531 ~~~g~~~~e~~v~~l~~~-g~~~~~d~~~l~~~~~~~~ 567 (1080)
+++||++||+++++|+.+ |+++++|+++|.++++|++
T Consensus 241 e~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~ 278 (279)
T cd07947 241 ERTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFE 278 (279)
T ss_pred ccccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999988 9999999999999999986
No 113
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=99.89 E-value=1.8e-23 Score=230.71 Aligned_cols=112 Identities=18% Similarity=0.320 Sum_probs=106.0
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHH
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMG 539 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e 539 (1080)
.| ++|+|+||+|.++|.+++++++.++++++ ++||++|+|||+|||+||+++|+++||++||+|++|||+++||++||
T Consensus 150 ~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E 229 (266)
T cd07944 150 IKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTE 229 (266)
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHH
Confidence 56 69999999999999999999999999986 39999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHH-HHHHHHHhccC
Q psy3968 540 AVVASLQGSDIDTGLDLKDISAYS-AYWEQTRQLYA 574 (1080)
Q Consensus 540 ~~v~~l~~~g~~~~~d~~~l~~~~-~~~~~~~~~~~ 574 (1080)
+++++|+.+ +++++|+++|.+++ +|++.++++|.
T Consensus 230 ~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~~~~~ 264 (266)
T cd07944 230 LLLDYLNNK-FGKKYNLEPVLELIDEYIAPLKKKYE 264 (266)
T ss_pred HHHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhccC
Confidence 999999988 88999999999999 99999876653
No 114
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=99.88 E-value=3.9e-23 Score=227.04 Aligned_cols=117 Identities=20% Similarity=0.314 Sum_probs=106.5
Q ss_pred CCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 450 PAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 450 ~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
++.+...+..+. .| ++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++||++||+|++
T Consensus 140 ~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~ 218 (262)
T cd07948 140 LVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVL 218 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 445555555444 68 89999999999999999999999999985 9999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHhcC---CCCCCCCHHHHHHHHHHHH
Q psy3968 528 SMSGMTSQPSMGAVVASLQGS---DIDTGLDLKDISAYSAYWE 567 (1080)
Q Consensus 528 glg~~~g~~~~e~~v~~l~~~---g~~~~~d~~~l~~~~~~~~ 567 (1080)
|||+|+||+++|+++.+|+.. ++.+++|++.|.+++++++
T Consensus 219 GlGeraGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~ 261 (262)
T cd07948 219 GIGERNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVA 261 (262)
T ss_pred ccccccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999999754 6778999999999999986
No 115
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.88 E-value=1.2e-21 Score=218.49 Aligned_cols=227 Identities=19% Similarity=0.309 Sum_probs=167.2
Q ss_pred CCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy3968 38 DVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGL 117 (1080)
Q Consensus 38 ~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igf 117 (1080)
.+|+|++..........+++.++..|++++ ++++++..+.||..++++|+++|+|+|++ ..+.+.+++.+++++++|
T Consensus 48 ~~d~v~~r~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t--~~~~~~~~~~~~~~~~~~ 124 (277)
T TIGR00768 48 ELDVVIVRIVSMFRGLAVARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRT--GLAGSPEEALKLIEEIGF 124 (277)
T ss_pred CCCEEEEechhHhhHHHHHHHHHHCCCeee-CCHHHHHHHhhHHHHHHHHHHCCCCCCCE--EEeCCHHHHHHHHHhcCC
Confidence 356666544211223457778888999997 56899999999999999999999999998 457889999999999999
Q ss_pred cEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeec--cc
Q psy3968 118 PVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDC--SV 195 (1080)
Q Consensus 118 PvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~--~~ 195 (1080)
|+|+||..|++|+|++++++.+++..+++....... ....+++|+||+|....++.++.. +|+++....|.. ..
T Consensus 125 p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~---~~~~~lvQe~I~~~~~~~~rv~v~-~~~~~~~~~r~~~~~~ 200 (277)
T TIGR00768 125 PVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNG---PQNLFYVQEYIKKPGGRDIRVFVV-GDEVIAAIYRITSGHW 200 (277)
T ss_pred CEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcc---cCCcEEEEeeecCCCCceEEEEEE-CCEEEEEEEEcCCCch
Confidence 999999999999999999999999887766543210 124799999999743245555444 345555444421 01
Q ss_pred cccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHH
Q psy3968 196 QRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQS 275 (1080)
Q Consensus 196 ~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~ 275 (1080)
..+........|. .++ +++.+.+.++++++|+ +.+.+||+++++|++||+|+|+|++.. .++..+|+|+.++
T Consensus 201 ~~n~~~g~~~~~~-~l~----~~~~~~a~~~~~~l~~-~~~~vD~~~~~~g~~~viEiN~~p~~~--~~~~~~g~~l~~~ 272 (277)
T TIGR00768 201 RTNLARGGKAEPC-PLT----EEIEELAIKAAKALGL-DVVGIDLLESEDRGLLVNEVNPNPEFK--NSVKTTGVNIAGK 272 (277)
T ss_pred hhhhhcCCeeeec-CCC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCeEEEEEcCCcchh--hhHHHHCCCHHHH
Confidence 1000000112232 233 4688899999999999 788899999998889999999998743 3466899999999
Q ss_pred HHHH
Q psy3968 276 QIRV 279 (1080)
Q Consensus 276 ~l~~ 279 (1080)
+++.
T Consensus 273 ~~~~ 276 (277)
T TIGR00768 273 LLDY 276 (277)
T ss_pred HHhh
Confidence 8864
No 116
>KOG0370|consensus
Probab=99.88 E-value=1.7e-21 Score=228.55 Aligned_cols=336 Identities=20% Similarity=0.286 Sum_probs=265.9
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCC-cccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCC
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYG-FLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPIT 103 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g-~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~ 103 (1080)
+..|.++++-..+...+|+...| .+. ..++-.+.+.|++++|.+|+.+..+.|+..+.++|.+.||..|+| ..++
T Consensus 980 is~E~vmDiYe~E~~~G~iis~GGQ~p--nNiA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~W--kelt 1055 (1435)
T KOG0370|consen 980 ISYERVMDIYELENSEGIIISVGGQLP--NNIALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAW--KELT 1055 (1435)
T ss_pred hhhhhhhhhhhhccCCceEEEecCcCc--chhhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhh--hhhc
Confidence 34577888888888888888776 444 335667888999999999999999999999999999999999999 5799
Q ss_pred CHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCC
Q psy3968 104 TTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAG 183 (1080)
Q Consensus 104 s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G 183 (1080)
+.+++.+|++++||||++.|++--+|.-|.++++.+||+..++.+...++ +.++++.+||+|.+|++++.++. +|
T Consensus 1056 ~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs~----dhPVVisKfie~AkEidvDAVa~-~G 1130 (1435)
T KOG0370|consen 1056 SLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVSP----DHPVVISKFIEGAKEIDVDAVAS-DG 1130 (1435)
T ss_pred cHHHHHHHHHhcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcCC----CCCEEhHHhhcccceechhhhcc-CC
Confidence 99999999999999999999999999999999999999999998876544 67999999999999999999976 56
Q ss_pred cEEEEE--eeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCc
Q psy3968 184 NVVHLY--ERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEH 261 (1080)
Q Consensus 184 ~vv~l~--~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~ 261 (1080)
+++... +.-....-+.....-..|++.++++..+++.+++.++++++.+.|+++++|+.. ++++.+||+|-|.+.+.
T Consensus 1131 ~~~~haiSEHvEnAGVHSGDAtlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k-~n~lkVIECN~RaSRSF 1209 (1435)
T KOG0370|consen 1131 KVLVHAISEHVENAGVHSGDATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAK-DNELKVIECNVRASRSF 1209 (1435)
T ss_pred eEEEEehhhhhhcccccCCceeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEec-CCeEEEEEeeeeeeccc
Confidence 655432 211112222334444678889999999999999999999999999999999986 45799999999999999
Q ss_pred cchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccC
Q psy3968 262 TVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAF 341 (1080)
Q Consensus 262 ~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~ 341 (1080)
+++....|+|+++...+..+|.++++..+ ......++.++.|......+-.|..|. ++.+.+++.++.-+...+|
T Consensus 1210 PFvSKtlgvdfi~~At~~i~g~~~~~~~~----~~~dyV~vKvPqFSf~RLagADp~Lgv-EMaSTGEVAcFG~~~~eay 1284 (1435)
T KOG0370|consen 1210 PFVSKTLGVDFIALATRAIMGVPVPPDLL----LHPDYVAVKVPQFSFSRLAGADPVLGV-EMASTGEVACFGEDRYEAY 1284 (1435)
T ss_pred cceehhcCchHHHHHHHHHhCCCCCCccc----cCCCeEEEEccccccccccCCCceeee-EeccccceeecccchHHHH
Confidence 99999999999999999999998875432 222567888888877777777777773 6666666544333322334
Q ss_pred CCceeccccC-CeeEEEEEecCChHHHHHHHHHHh
Q psy3968 342 AGAIISPYYD-SLLVKVIAHAADLQSSCAKMNRAL 375 (1080)
Q Consensus 342 ~G~~i~~~~d-s~l~~Via~G~t~~eA~~~a~ral 375 (1080)
-.+..+++|. +.-+.+|..|..+.+...-++...
T Consensus 1285 lkam~sTgF~iPk~~i~i~ig~~k~ell~~~~~l~ 1319 (1435)
T KOG0370|consen 1285 LKAMLSTGFKIPKKNILISIGSYKPELLPSARDLA 1319 (1435)
T ss_pred HHHHHhcCccccCCCeEEEeccchHHHHHHHHHHH
Confidence 3444444433 344566777777766665555444
No 117
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=99.88 E-value=1.1e-22 Score=225.63 Aligned_cols=120 Identities=37% Similarity=0.535 Sum_probs=110.8
Q ss_pred CCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 448 LLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 448 ~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
.+++.+...+..+. .| +.|+|+||.|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++||++||+|
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s 222 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGS 222 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEec
Confidence 44555555555444 78 89999999999999999999999999998899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy3968 526 VDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWE 567 (1080)
Q Consensus 526 ~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~ 567 (1080)
++|||+|+||++||+++.+|+..|+++++|++.|.+++++++
T Consensus 223 ~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 264 (265)
T cd03174 223 VNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRYVE 264 (265)
T ss_pred cccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999986
No 118
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=99.87 E-value=7.4e-23 Score=227.24 Aligned_cols=106 Identities=25% Similarity=0.429 Sum_probs=100.6
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHH
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGA 540 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~ 540 (1080)
+| ++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||+|+||+++|.
T Consensus 163 ~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGeraGn~~~e~ 242 (273)
T cd07941 163 AGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGNANLCS 242 (273)
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccccccccccccHHH
Confidence 45 58999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCCC--CCCCHHHHHHHHHHHH
Q psy3968 541 VVASLQ-GSDID--TGLDLKDISAYSAYWE 567 (1080)
Q Consensus 541 ~v~~l~-~~g~~--~~~d~~~l~~~~~~~~ 567 (1080)
++.+|+ .+|++ +++|++.|.+++++++
T Consensus 243 ~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~ 272 (273)
T cd07941 243 IIPNLQLKMGYECLPEENLKKLTELSRFVS 272 (273)
T ss_pred HHHHHHhccCCCCcCccCHHHHHHHHHHHh
Confidence 999998 66776 4899999999999986
No 119
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=99.87 E-value=1.3e-22 Score=230.46 Aligned_cols=121 Identities=25% Similarity=0.388 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHC-CCCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 449 LPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKH-PDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 449 ~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~-p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
+++.+...+..+. .| ++|+|+||+|.++|.+++++++++++++ |+++|++|+|||+|||+||+++|+++||++||+|
T Consensus 142 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~S 221 (337)
T PRK08195 142 PPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGS 221 (337)
T ss_pred CHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEec
Confidence 3444444433333 56 7999999999999999999999999998 6899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Q psy3968 526 VDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQT 569 (1080)
Q Consensus 526 ~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~ 569 (1080)
++|||+++||++||.++++|+.+|+++++|+++|.++++++..-
T Consensus 222 l~GlG~~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p 265 (337)
T PRK08195 222 LAGLGAGAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRP 265 (337)
T ss_pred ChhhcccccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999987653
No 120
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.87 E-value=1.5e-20 Score=210.21 Aligned_cols=229 Identities=22% Similarity=0.305 Sum_probs=165.2
Q ss_pred CCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy3968 38 DVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGL 117 (1080)
Q Consensus 38 ~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igf 117 (1080)
++|++++..........++..++..|+++++ ++++++.+.||..++++|+++|||+|++ ..+.+.+++.++...++|
T Consensus 47 ~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n-~~~~~~~~~dK~~~~~~l~~~gip~P~t--~~~~~~~~~~~~~~~~~~ 123 (280)
T TIGR02144 47 DVDVAIIRCVSQSRALYSARLLEALGVPVIN-SSHVIEACGDKIFTYLKLAKAGVPTPRT--YLAFDREAALKLAEALGY 123 (280)
T ss_pred CCCEEEEcCcchhhHHHHHHHHHHCCCcEEC-cHHHHHHHhhHHHHHHHHHHCCcCCCCe--EeeCCHHHHHHHHHHcCC
Confidence 4566665421111123346677889999985 6899999999999999999999999998 456788888888889999
Q ss_pred cEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CcEEEEEEEEecCCcEEEEEeeecccc
Q psy3968 118 PVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIER-PRHIEVQLLGDKAGNVVHLYERDCSVQ 196 (1080)
Q Consensus 118 PvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G-~~ei~v~vl~d~~G~vv~l~~r~~~~~ 196 (1080)
|+|+||..|++|+|++++++.+++.++++..... ....+..+++|+||+| .+++++.+++ |..++...|.....
T Consensus 124 P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~--~~~~~~~~ivQefI~~~~~d~~v~vig---~~~~~~~~r~~~~~ 198 (280)
T TIGR02144 124 PVVLKPVIGSWGRLVALIRDKDELESLLEHKEVL--GGSQHKLFYIQEYINKPGRDIRVFVIG---DEAIAAIYRYSNHW 198 (280)
T ss_pred CEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhh--cCCcCCeEEEEcccCCCCCceEEEEEC---CEEEEEEEEcCCch
Confidence 9999999999999999999999998876542211 0112357999999986 2667766663 24443222211111
Q ss_pred ccc-cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHH
Q psy3968 197 RRH-QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQS 275 (1080)
Q Consensus 197 ~~~-~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~ 275 (1080)
+.+ .......|. .++ +++.+.+.++++++|+ +.++|||+++++|++||+|||+|++... +...+|+|+.+.
T Consensus 199 ~~~~~~g~~~~~~-~~~----~~~~~~a~~~~~~lg~-~~~~vD~~~~~~g~~~v~EvN~~p~~~~--~~~~~g~~~~~~ 270 (280)
T TIGR02144 199 RTNTARGGKAEPC-PLD----EEVEELAVKAAEAVGG-GVVAIDIFESKERGLLVNEVNHVPEFKN--SVRVTGVNVAGE 270 (280)
T ss_pred hhhhhcCCceecc-CCC----HHHHHHHHHHHHHhCC-CeEEEEEEEcCCCCEEEEEEeCCcchhh--hhHhhCCCHHHH
Confidence 111 111122333 244 3578899999999997 5888999999888899999999987643 345799999999
Q ss_pred HHHHHcC
Q psy3968 276 QIRVAEG 282 (1080)
Q Consensus 276 ~l~~alG 282 (1080)
.++.++.
T Consensus 271 ~~~~~~~ 277 (280)
T TIGR02144 271 ILEYAVS 277 (280)
T ss_pred HHHHHHH
Confidence 9987654
No 121
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.87 E-value=1e-20 Score=213.78 Aligned_cols=224 Identities=19% Similarity=0.280 Sum_probs=170.5
Q ss_pred cCCCEEEeCCCc-cccc-HHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy3968 37 NDVDAIHPGYGF-LSER-SDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK 114 (1080)
Q Consensus 37 ~~iDaVipg~g~-lsE~-~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ 114 (1080)
.++|+|++..+. .... ...+..++..| +++++++.++..+.||..++++++++|||+|++. .+.+.+++.+++++
T Consensus 56 ~~~d~v~~~~~~~~~~~~~~~~~~le~~g-~~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~ 132 (300)
T PRK10446 56 PHFDAVIPRIGTAITFYGTAALRQFEMLG-SYPLNESVAIARARDKLRSMQLLARQGIDLPVTG--IAHSPDDTSDLIDM 132 (300)
T ss_pred CCCCEEEEcCCCchhhHHHHHHHHHHHCC-CceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHH
Confidence 378999986442 1111 22356788889 5668999999999999999999999999999983 46788888888888
Q ss_pred h-CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccC---CCcEEEEEEEEecCCcEEEEEe
Q psy3968 115 Y-GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE---RPRHIEVQLLGDKAGNVVHLYE 190 (1080)
Q Consensus 115 i-gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~---G~~ei~v~vl~d~~G~vv~l~~ 190 (1080)
+ +||+|+||..|++|+||+++++.+++..+++.+.. . +..+++|+||+ | +++.+.+++ ++++....
T Consensus 133 ~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~-----~-~~~~lvQe~I~~~~g-~d~rv~vig---~~~~~~~~ 202 (300)
T PRK10446 133 VGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRG-----L-NAHILVQEYIKEAQG-CDIRCLVVG---DEVVAAIE 202 (300)
T ss_pred hCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHh-----c-CCCEEEEeeeccCCC-ceEEEEEEC---CEEEEEEE
Confidence 7 79999999999999999999999998888776532 1 35799999994 6 889888874 35665555
Q ss_pred eecccccccc-EE---EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhc
Q psy3968 191 RDCSVQRRHQ-KV---VEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEE 266 (1080)
Q Consensus 191 r~~~~~~~~~-~~---~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~ 266 (1080)
|..... ++. +. ....|. .++ +++.+.|.++++++|+. .++|||+++++| +||+|||++++.. .++.
T Consensus 203 r~~~~~-~~~~n~~~g~~~~~~-~l~----~~~~~~a~~a~~alg~~-~~gvD~~~~~~g-~~vlEvN~~pg~~--~~~~ 272 (300)
T PRK10446 203 RRAKEG-DFRSNLHRGGAASVA-SIT----PQEREIAIKAARTMALD-VAGVDILRANRG-PLVMEVNASPGLE--GIEK 272 (300)
T ss_pred EecCCC-chhheeccCCeeccC-CCC----HHHHHHHHHHHHHhCCC-EEEEEEEEcCCC-cEEEEEECCCChh--hhHH
Confidence 533211 111 00 111222 243 56889999999999997 788999999877 8999999988643 3467
Q ss_pred ccCCCHHHHHHHHHcCC
Q psy3968 267 ITGVDLVQSQIRVAEGM 283 (1080)
Q Consensus 267 ~tGvdl~~~~l~~alG~ 283 (1080)
++|+|+.+.+++.....
T Consensus 273 ~~g~~~~~~~~~~i~~~ 289 (300)
T PRK10446 273 TTGIDIAGKMIRWIERH 289 (300)
T ss_pred HHCcCHHHHHHHHHHHh
Confidence 89999999999887655
No 122
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=99.86 E-value=2.6e-22 Score=227.47 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=102.2
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHH
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMG 539 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e 539 (1080)
.| ++|+|+||+|.++|.+++++++++++.++ +++|++|+|||+|||+||+++|+++||++||+|++|||+++||++||
T Consensus 155 ~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E 234 (333)
T TIGR03217 155 YGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLE 234 (333)
T ss_pred cCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHH
Confidence 56 69999999999999999999999999985 69999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q psy3968 540 AVVASLQGSDIDTGLDLKDISAYSAYWEQ 568 (1080)
Q Consensus 540 ~~v~~l~~~g~~~~~d~~~l~~~~~~~~~ 568 (1080)
.++++|+.+|++|++|+++|.++++++-.
T Consensus 235 ~lv~~l~~~g~~tgidl~~l~~~a~~~v~ 263 (333)
T TIGR03217 235 VFVAVLDRLGWNTGCDLFKLMDAAEDIVR 263 (333)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 123
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=99.86 E-value=9.1e-23 Score=222.71 Aligned_cols=187 Identities=22% Similarity=0.318 Sum_probs=130.5
Q ss_pred ecCChHHHHHHHHHHhhccEEccc-ccCHHHHHHhcc---cccccCCceeeeeecCCccccccCCcchHHH---HHHHhh
Q psy3968 360 HAADLQSSCAKMNRALREFRVRGV-KTNIPFLLNVLT---NQKFVNGAVDTYFIDENPQLFTLQPTKNRAQ---KLLNYL 432 (1080)
Q Consensus 360 ~G~t~~eA~~~a~ral~~i~I~Gv-~tni~~l~~il~---~~~F~~g~~~T~fie~~~elf~~~~~~dra~---~L~~yl 432 (1080)
.+++..+.++++.+.+....+.++ +.+.......+. ... ...++. |+..++.+.+.....++.+ .+...+
T Consensus 38 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g--~~~i~i-~~~~s~~~~~~~~~~~~~~~~~~~~~~v 114 (237)
T PF00682_consen 38 ASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAG--IDIIRI-FISVSDLHIRKNLNKSREEALERIEEAV 114 (237)
T ss_dssp SSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTT--SSEEEE-EEETSHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred cCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhcc--CCEEEe-cCcccHHHHHHhhcCCHHHHHHHHHHHH
Confidence 344556667777777777787776 555555444333 222 122333 3444443333222222222 222223
Q ss_pred heeeecC----CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCch
Q psy3968 433 GTVLVNG----PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGA 506 (1080)
Q Consensus 433 a~V~Vng----~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gl 506 (1080)
..+.-.| ++|+..++.+++++.+.+..+. +| +.|+|+||+|.++|.+++++++.+++++|+++|++|+|||+||
T Consensus 115 ~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 115 KYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp HHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred HHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 2222222 4677777777777777666555 68 8999999999999999999999999999889999999999999
Q ss_pred hHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCC
Q psy3968 507 GVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSD 549 (1080)
Q Consensus 507 a~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g 549 (1080)
|+||+++|+++||++||+|++|||+|+||++||+++.+|+.+|
T Consensus 195 a~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 195 AVANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALERMG 237 (237)
T ss_dssp HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHHHT-
T ss_pred hhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999775
No 124
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.84 E-value=3.6e-20 Score=196.64 Aligned_cols=186 Identities=24% Similarity=0.361 Sum_probs=134.6
Q ss_pred HHHHCCCCCCCCCCCCCCCHHH--HHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEE
Q psy3968 86 AAIDSGVPIVPGTPGPITTTEE--AMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFI 163 (1080)
Q Consensus 86 ~l~~~GIpvp~~~~~~v~s~ee--~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlV 163 (1080)
+++.+|||+|++....-.+... ..+....++||+||||..+++|.||.+|++.+||.++++.++.. +++++|
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~vlV 74 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDVLV 74 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEEEE
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceEEE
Confidence 5789999999995322233322 34567889999999999999999999999999999999887642 468999
Q ss_pred eeccCCCcEEEEEEEEecCCcEEEEEeeecc---------ccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcc
Q psy3968 164 EKFIERPRHIEVQLLGDKAGNVVHLYERDCS---------VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSN 234 (1080)
Q Consensus 164 EeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~---------~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G 234 (1080)
|+||+| +|++|.+++++...+..+.+.... +...........|+ .+++++.++|.++|.+++++||++|
T Consensus 75 EefI~G-~E~tv~vl~~~~~~~~~~~ei~~~~~~~d~~~Ky~~~~~~~~~~~pa-~l~~~~~~~i~~~a~~a~~~lg~~~ 152 (203)
T PF07478_consen 75 EEFISG-REFTVGVLGNGEPRVLPPVEIVFPSEFYDYEAKYQPADSETEYIIPA-DLSEELQEKIKEIAKKAFKALGCRG 152 (203)
T ss_dssp EE--SS-EEEEEEEEESSSTEEEEEEEEEESSSEEEHHHHHSGCCSCEEEESS--SS-HHHHHHHHHHHHHHHHHTTTCS
T ss_pred Eeeecc-cceEEEEEecCCcccCceEEEEcCCCceehhheeccCCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999 999999999777555544332111 11112445567787 6999999999999999999999999
Q ss_pred eEEEEEEEcCCCCEEEEEEeccCCCCc----cchhcccCCCHHHHHHHH
Q psy3968 235 AGTVEFLCDESGQFYFIEVNARLQVEH----TVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 235 ~~~vEfivd~dG~~~~iEvNpR~~g~~----~~~e~~tGvdl~~~~l~~ 279 (1080)
.+.+||+++++|++||+|+|+-+|-+. +..-...|+++.+++-++
T Consensus 153 ~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~~~~~G~sy~~li~~i 201 (203)
T PF07478_consen 153 YARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRMAEAAGISYEDLIERI 201 (203)
T ss_dssp EEEEEEEEETTTEEEEEEEESS-G-STTSHHHHHHHHTT--HHHHHHHH
T ss_pred ceeEEEEeccCCceEEEeccCcccccCCCHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999999999887421 112334666666655443
No 125
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.84 E-value=7.9e-20 Score=187.82 Aligned_cols=167 Identities=28% Similarity=0.417 Sum_probs=140.7
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEE-eCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEee
Q psy3968 87 AIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK-AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEK 165 (1080)
Q Consensus 87 l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVK-P~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEe 165 (1080)
|+++|||+||| ..+.+.+++.++++++|||+|+| +..|..|+|..++++.+|+..+++.+ +.+++++|+
T Consensus 1 l~~~gip~~~~--~~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~ 70 (172)
T PF02222_consen 1 LDELGIPTAPY--ATIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE 70 (172)
T ss_dssp HHHTT--B-EE--EEESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred CcccCCCCCCe--EEECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence 67899999999 67999999999999999999999 55566899999999999999988764 467999999
Q ss_pred ccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCC
Q psy3968 166 FIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDES 245 (1080)
Q Consensus 166 yI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~d 245 (1080)
||+-.+|+++.+.++.+|++.. ++-....++++......+|+ .+++++.+++.+++.+++++|+|.|.+.|||+++++
T Consensus 71 ~v~f~~EiSvivaR~~~G~~~~-yp~~en~~~~~il~~s~~Pa-~i~~~~~~~a~~ia~~i~~~l~~vGv~~VE~Fv~~~ 148 (172)
T PF02222_consen 71 FVPFDREISVIVARDQDGEIRF-YPPVENVHRDGILHESIAPA-RISDEVEEEAKEIARKIAEALDYVGVLAVEFFVTKD 148 (172)
T ss_dssp ---ESEEEEEEEEEETTSEEEE-EEEEEEEEETTEEEEEEESC-SS-HHHHHHHHHHHHHHHHHHTSSEEEEEEEEEETT
T ss_pred ccCCcEEEEEEEEEcCCCCEEE-EcCceEEEECCEEEEEECCC-CCCHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEecC
Confidence 9999999999999999998665 45445677888888889999 599999999999999999999999999999999999
Q ss_pred CC-EEEEEEeccCCCCccchh
Q psy3968 246 GQ-FYFIEVNARLQVEHTVTE 265 (1080)
Q Consensus 246 G~-~~~iEvNpR~~g~~~~~e 265 (1080)
|+ +|+.|+.||+..+.++|.
T Consensus 149 g~~v~vNEiaPRpHnSGh~Ti 169 (172)
T PF02222_consen 149 GDEVLVNEIAPRPHNSGHWTI 169 (172)
T ss_dssp STEEEEEEEESS--GGGGGHH
T ss_pred CCEEEEEeccCCccCcccEee
Confidence 98 999999999998766653
No 126
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=99.84 E-value=1.9e-19 Score=201.32 Aligned_cols=255 Identities=15% Similarity=0.145 Sum_probs=185.3
Q ss_pred hccceEEEccCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHH-HcCCcEeCCcHHHHHHh--cCH
Q psy3968 6 QKADESYLVGKGLPPVEAYLNI--PEIIRVAKENDVDAIHPGYGFLSERSDFAQAVL-DAGIRFIGPSPYVVQQM--GDK 80 (1080)
Q Consensus 6 ~~ADea~~v~~~~~~~~~yld~--e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~-~~gi~~iGps~eai~~~--~DK 80 (1080)
..+|+.+.+ ++|.|+ +.+.+..++.+ +|+.-+|.+.+.... +..+ +..+|++|+ ...++.. +||
T Consensus 59 ~~~d~~i~~-------~~f~~~~~~~~~~~l~~~n--~i~iPh~sf~~y~g~-~~ie~~~~vp~fGn-r~~lrwE~~~dK 127 (366)
T PRK13277 59 GIVDEVIVL-------DKFKDILSEKVQDELREEN--AIFVPNRSFAVYVGY-DAIENEFKVPIFGN-RYLLRWEERTGE 127 (366)
T ss_pred cccceEEEe-------cchhhhhhHHHHHHHHHCC--eEEecCCCeEEEecH-HHHhhcCCCCcccC-HHHhhhhhccCH
Confidence 468999988 356553 35666655544 555555766656554 3445 589999987 4555555 788
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCC--CcCeEEECCHhHHHHHHHHHHHHHH-HhcC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGG--GRGMRVVRKMEDVEENFQRASSEAK-AAFG 157 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~G--g~GV~iv~s~eeL~~a~~~~~~~a~-~~~g 157 (1080)
..+.++|+++||++|+.+ .++ +++.+|+||||..+.| |+|+++++|.+|+............ ..-+
T Consensus 128 k~~yk~L~~aGI~~Pk~~----~~p-------~eId~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~ 196 (366)
T PRK13277 128 KNYYWLLEKAGIPYPKLF----KDP-------EEIDRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDRED 196 (366)
T ss_pred HHHHHHHHHcCCCCceee----cCc-------cccCccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccc
Confidence 888889999999999874 333 3568999999999999 9999999999999887665432100 0001
Q ss_pred CCcEEEeeccCCCcEEEEEEEEe-cCCcEEEE--Eeeecc-----------------ccccccEEEEEcCCCCCCHHHHH
Q psy3968 158 NGAMFIEKFIERPRHIEVQLLGD-KAGNVVHL--YERDCS-----------------VQRRHQKVVEIAPAPHLDINVRN 217 (1080)
Q Consensus 158 ~~~vlVEeyI~G~~ei~v~vl~d-~~G~vv~l--~~r~~~-----------------~~~~~~~~~~~~Pa~~l~~~~~~ 217 (1080)
-.+++|||||.| .+++++++.+ -+|++..+ ..|..+ ...++..++ ..|. .+.+.+.+
T Consensus 197 ~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~~p~~vv~G-~~p~-t~rEslle 273 (366)
T PRK13277 197 LKNARIEEYVIG-AHFNFNYFYSPIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNEEPRYIEVG-HEPA-TIRESLLE 273 (366)
T ss_pred cccceeEeccCC-CEEEEEEEEeccCCcEEEEEEeeccccccccccccChhhhhhcccCCceEEEc-Cccc-cchHHHHH
Confidence 135679999999 8999999987 36654443 222111 000111122 3555 57778899
Q ss_pred HHHHHHHHHHHHcC------CcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHH--HHcCCCCC
Q psy3968 218 KMTDLAVKLAKHVG------YSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIR--VAEGMTLP 286 (1080)
Q Consensus 218 ~l~~~a~~i~~alg------~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~--~alG~~l~ 286 (1080)
++.+.+.+++++++ +.|++++|+++++++++|++|||||++|+..+. +.+|.|...+++. +.+|+.++
T Consensus 274 ~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d~~~~V~EInpR~gGGtnl~-~~aGs~y~~l~~~~~ms~GrRIa 349 (366)
T PRK13277 274 KVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPDLDFVVYDVAPRIGGGTNVY-MGVGSPYSKLYFGKPMSTGRRIA 349 (366)
T ss_pred HHHHHHHHHHHHhhhhcCcccccceEEEEEEcCCCcEEEEEEcCCcCCCccce-eecCCCcHHHHhcCccccCCcch
Confidence 99999999999976 689999999999889999999999999987763 4579999999999 88998764
No 127
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=99.84 E-value=2e-19 Score=204.85 Aligned_cols=228 Identities=18% Similarity=0.231 Sum_probs=164.0
Q ss_pred hhccceEEEccCCCCCCCCC---CCHHHHHHHHHHcCCCE-EEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 5 RQKADESYLVGKGLPPVEAY---LNIPEIIRVAKENDVDA-IHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 5 ~~~ADea~~v~~~~~~~~~y---ld~e~Ii~~a~~~~iDa-Vipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
..++|+.+.+ ++| +|.+...++++. ++ ++|. |.++.... ++.+...+++++| +.++++...||
T Consensus 58 ~~~~De~i~v-------~~~~di~~~~~~~~l~~~---~~iiIp~-gs~v~y~~-~d~l~~~~~p~~g-n~~~l~~e~dK 124 (358)
T PRK13278 58 FPVADEFIIV-------DDFSDILNEAVQEKLREM---NAILIPH-GSFVAYLG-LENVEKFKVPMFG-NREILRWEADR 124 (358)
T ss_pred ccccceEEEE-------cchhhhcCHHHHHHHhhc---CcEEEeC-CCcceeec-HHHHHHCCCCcCC-CHHHHHHhcCH
Confidence 4567888887 234 444445555544 44 4444 43344444 3333478888775 78899999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC-CC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG-NG 159 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g-~~ 159 (1080)
..++++|+++|||+|++ +.+.++ ++||+|+||..|.||+|+++|++.+|+.++++.+.+.. .++ .+
T Consensus 125 ~~~k~~L~~aGIp~p~~----~~~~~~-------i~~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~--~~~~~~ 191 (358)
T PRK13278 125 DKERKLLEEAGIRIPRK----YESPED-------IDRPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERG--LITEVE 191 (358)
T ss_pred HHHHHHHHHcCCCCCCE----eCCHHH-------cCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhcc--ccCCCC
Confidence 99999999999999986 455543 57999999999999999999999999999988875421 111 46
Q ss_pred cEEEeeccCCCcEEEEEEEEec-CCc--EEEEEeeeccc----cc-----------c-ccEEEEEcCCCCCCHHHHHHHH
Q psy3968 160 AMFIEKFIERPRHIEVQLLGDK-AGN--VVHLYERDCSV----QR-----------R-HQKVVEIAPAPHLDINVRNKMT 220 (1080)
Q Consensus 160 ~vlVEeyI~G~~ei~v~vl~d~-~G~--vv~l~~r~~~~----~~-----------~-~~~~~~~~Pa~~l~~~~~~~l~ 220 (1080)
.++|||||.| .+++++++... +|+ ++.+-.|-.+- .+ . ........|+ .+.+.+..++.
T Consensus 192 ~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~~p~~v~~Gn~P~-~~resll~~v~ 269 (358)
T PRK13278 192 EAIIQEYVVG-VPYYFHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQLELGIDPTYVVVGNIPV-VLRESLLPQVF 269 (358)
T ss_pred eEEEEecCCC-cEEEEEEEEeccCCeEEEEeeceeeeecccceeeccchhhhhcccCCceeEecceec-cchHhHHHHHH
Confidence 8999999999 79999999752 344 33332221110 00 0 0111223455 47788888999
Q ss_pred HHHHHHHHH----c--CCcceEEEEEEEcCCCCEEEEEEeccCCCC
Q psy3968 221 DLAVKLAKH----V--GYSNAGTVEFLCDESGQFYFIEVNARLQVE 260 (1080)
Q Consensus 221 ~~a~~i~~a----l--g~~G~~~vEfivd~dG~~~~iEvNpR~~g~ 260 (1080)
+.+.+++++ + +..|++++|+++++++++|++|+|+|+.|+
T Consensus 270 ~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~d~~~~V~Eis~R~~gg 315 (358)
T PRK13278 270 EYGERFVETSKELVPPGMIGPFCLESVVTDNLEIVVFEISARIVAG 315 (358)
T ss_pred HHHHHHHHHHHHhcCccccCCceEEEEEcCCCCEEEEEEeCcccCC
Confidence 999998888 4 777999999999999999999999999553
No 128
>KOG0370|consensus
Probab=99.83 E-value=4.2e-21 Score=225.24 Aligned_cols=335 Identities=21% Similarity=0.311 Sum_probs=268.2
Q ss_pred hccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcc---cccHHH--HHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 6 QKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFL---SERSDF--AQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 6 ~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~l---sE~~~~--a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
-+||+.|.++ ...+.+....+.+.+|+|+.++|.. .--..+ .-.++..+.+..|.+.+++....|+
T Consensus 429 ~lAD~vyflp---------vT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr 499 (1435)
T KOG0370|consen 429 GLADKVYFLP---------VTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDR 499 (1435)
T ss_pred ccceEEEEee---------cCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccH
Confidence 3799999983 2356788888899999999987732 111111 2256778999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+.+.+++.+.++.++ ..+++.+++.++++.+|||+|+..++.-||.|--++++.+||.+....+++. ..+
T Consensus 500 ~lfa~am~ei~e~ia~s--~a~~sie~al~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~------s~Q 571 (1435)
T KOG0370|consen 500 DLFARALNEINEKIAPS--EAVSTIEEALEAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALAL------SPQ 571 (1435)
T ss_pred HHHHHHHHhhcccccch--hhHhHHHHHHHHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhcccc------Cce
Confidence 99999999999999998 6799999999999999999999999999999999999999999887776553 468
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeecccc------ccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcc
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQ------RRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSN 234 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~------~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G 234 (1080)
++||+-+.|.+|++..+++|..++++.+ |.+. -+....+..+|++.++++..+.++..+.++.++||..|
T Consensus 572 ilvekSlkGwkevEyevvrDa~~nciTv----cnmen~DplgihtGdSiVvapsqtlsd~ey~mlrttaikVirhlgvvG 647 (1435)
T KOG0370|consen 572 ILVEKSLKGWKEVEYEVVRDAYDNCITV----CNMENFDPLGIHTGDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVG 647 (1435)
T ss_pred eeehhhhccccceEEEEEeccccchhhh----cCCcccCcceeeccceEEEeeccccChHHHHHHHhcchhheeccCCcc
Confidence 9999999999999999999999998876 4432 23356677999999999999999999999999999999
Q ss_pred eEEEEEEEcCC-CCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCC
Q psy3968 235 AGTVEFLCDES-GQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAK 313 (1080)
Q Consensus 235 ~~~vEfivd~d-G~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~ 313 (1080)
-|++++.+++. -++++||+|+|++.+..+...+||..|.....++++|.++|+++-.- .+.. ..
T Consensus 648 EcniQyaL~p~s~~y~IiEVNarLSrssaLASkaTgypLAy~aAKlalg~~lpe~~n~V-----t~~T----------~A 712 (1435)
T KOG0370|consen 648 ECNIQYALNPYSLEYRIIEVNARLSRSSALASKATGYPLAYTAAKLALGIPLPELKNSV-----TKTT----------TA 712 (1435)
T ss_pred cccceeeecccceeEEEEEEEeEEeehhhhhccCccCcHHHHHHHHhcCcccccCCccc-----ccce----------ec
Confidence 99999999984 46999999999999999999999999999999999999999765211 1111 12
Q ss_pred CCCCCCCceEEEEcCCcceEEEcCCc-cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccc
Q psy3968 314 NFQPDTGRIEVFRSGEGMGIRLDGAS-AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVK 384 (1080)
Q Consensus 314 ~f~p~~G~i~~~~~~~~~gvr~d~~~-~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~ 384 (1080)
.|.|+...+...- .|||... .+-...+...+- .+|.|++.|++++||.+++.|..+. .+.|+.
T Consensus 713 cFEpslDY~v~Ki------prWDl~kf~~vs~~igssmK-SvgEvm~iGR~feea~QKalr~vd~-~~~Gf~ 776 (1435)
T KOG0370|consen 713 CFEPSLDYCVVKI------PRWDLSKFQRVSTEIGSSMK-SVGEVMAIGRTFEEAFQKALRMVDP-SLLGFM 776 (1435)
T ss_pred ccCcchhheeeec------ccccHHHHHHHHHhhchhhh-hhhhhhhhhhhHHHHHHHHHhhcCh-hhcCcc
Confidence 4677776544322 1444321 011122222222 4899999999999999999998865 455663
No 129
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.6e-18 Score=194.79 Aligned_cols=233 Identities=21% Similarity=0.312 Sum_probs=185.2
Q ss_pred cCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCC--CHHHHHHHHH
Q psy3968 37 NDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPIT--TTEEAMEFCL 113 (1080)
Q Consensus 37 ~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~--s~ee~~~~~~ 113 (1080)
.++|.++|. +|+..|+..+...++..|+|++|++..+...+.||..+|++++..|+|++++...... +.....++..
T Consensus 60 ~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~ 139 (317)
T COG1181 60 QKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEE 139 (317)
T ss_pred ccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhc
Confidence 568888885 6788899999999999999999999999999999999999999999999998532222 2333456777
Q ss_pred HhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEE------
Q psy3968 114 KYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH------ 187 (1080)
Q Consensus 114 ~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~------ 187 (1080)
.++||++|||...++|.|+..+++.+|+..+++.+... +.++++|+|+.| +|+++.++.+.. ....
T Consensus 140 ~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~~-rei~v~vl~~~~-~~~~l~~~eI 211 (317)
T COG1181 140 GLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKY------DRDVLREQGITG-REIEVGVLGNDY-EEQALPLGEI 211 (317)
T ss_pred ccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHh------CCceeeccCCCc-ceEEEEecCCcc-cceecCceEE
Confidence 89999999999999999999999999999988877664 678999999998 999999997744 2111
Q ss_pred ------EEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC-CCCEEEEEEeccCCC-
Q psy3968 188 ------LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-SGQFYFIEVNARLQV- 259 (1080)
Q Consensus 188 ------l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-dG~~~~iEvNpR~~g- 259 (1080)
++.++.++..... .....|+ .++++..++++++|.++.+++|+.|.+.+||++++ +|++|++|+|+.+|-
T Consensus 212 ~~~~~~fydye~Ky~~~gg-~~~~~pa-~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t 289 (317)
T COG1181 212 PPKGEEFYDYEAKYLSTGG-AQYDIPA-GLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGEFVLLEVNTNPGMT 289 (317)
T ss_pred ecCCCeEEeeeccccCCCC-ceeeCCC-CCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCCEEEEEEeCCCCCc
Confidence 1222222222111 3336676 59999999999999999999999999999999998 788999999999984
Q ss_pred Cccc---hhcccCCCHHHHHHHH
Q psy3968 260 EHTV---TEEITGVDLVQSQIRV 279 (1080)
Q Consensus 260 ~~~~---~e~~tGvdl~~~~l~~ 279 (1080)
.+.+ .-...|+++..+...+
T Consensus 290 ~~sl~P~~~~~~gi~~~~L~~~~ 312 (317)
T COG1181 290 AMSLFPKAAAAAGISFAILVLRF 312 (317)
T ss_pred ccccchhhHHHcCCCHHHHHHHH
Confidence 2222 3344677666655543
No 130
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.79 E-value=3.7e-18 Score=177.10 Aligned_cols=176 Identities=21% Similarity=0.282 Sum_probs=134.9
Q ss_pred cCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcE-EEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhc
Q psy3968 78 GDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPV-IFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAF 156 (1080)
Q Consensus 78 ~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPv-VVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~ 156 (1080)
.+|..+|++++++|||++++ ..+++.+++.+++++.++|+ ||||...++|+||.++++.+|..+++++++.. ..|
T Consensus 1 ~SK~faK~fm~~~~IPTa~~--~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~--~~f 76 (194)
T PF01071_consen 1 GSKSFAKEFMKRYGIPTAKY--KVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVD--RKF 76 (194)
T ss_dssp HBHHHHHHHHHHTT-SB--E--EEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTS--STT
T ss_pred CCHHHHHHHHHHcCCCCCCe--eEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccc--ccc
Confidence 37999999999999999988 67999999999999999999 99999999999999999999999999998763 346
Q ss_pred C--CCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccc------cccEEEEEcCCCCCCHHHHHHHHH-HHHHHH
Q psy3968 157 G--NGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQR------RHQKVVEIAPAPHLDINVRNKMTD-LAVKLA 227 (1080)
Q Consensus 157 g--~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~------~~~~~~~~~Pa~~l~~~~~~~l~~-~a~~i~ 227 (1080)
| ...++||||+.| .|+++.++.|++.-+.....++..-.. +..-.+.++|.+.++++..+++.+ +....+
T Consensus 77 g~~~~~vvIEE~l~G-~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMGa~sp~p~~~~~~~~~i~~~I~~pt~ 155 (194)
T PF01071_consen 77 GDAGSKVVIEEFLEG-EEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMGAYSPVPFITDELLEEIIEEILEPTL 155 (194)
T ss_dssp CCCGSSEEEEE---S-EEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESEEEESTTTS-HHHHHHHHHHTHHHHH
T ss_pred CCCCCcEEEEeccCC-eEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCccceeecccCCHHHHHHHHHHHHHHHH
Confidence 5 468999999999 899999999976433222223322111 112335688998889888777776 555555
Q ss_pred HHc-----CCcceEEEEEEEcCCCCEEEEEEeccCCC
Q psy3968 228 KHV-----GYSNAGTVEFLCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 228 ~al-----g~~G~~~vEfivd~dG~~~~iEvNpR~~g 259 (1080)
+.| .|+|...+.++++.+| +++||.|.|+|.
T Consensus 156 ~~l~~eg~~y~GvLy~glMlt~~G-p~vlEfN~RfGD 191 (194)
T PF01071_consen 156 KGLKKEGIPYRGVLYAGLMLTEDG-PKVLEFNVRFGD 191 (194)
T ss_dssp HHHHHTT---EEEEEEEEEEETTE-EEEEEEESSGST
T ss_pred HHHHhcCCCcceeeeeeeEEeCCC-cEEEEEeCCCCC
Confidence 555 6789999999999888 999999999985
No 131
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.77 E-value=1.5e-17 Score=207.34 Aligned_cols=250 Identities=22% Similarity=0.352 Sum_probs=187.7
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCE--------EEeCCCcccccHHHHHHHHHcCCcEeCCcHHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDA--------IHPGYGFLSERSDFAQAVLDAGIRFIGPSPYV 73 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDa--------Vipg~g~lsE~~~~a~~l~~~gi~~iGps~ea 73 (1080)
..|.+.+|+.+++||. ...|++.|++.++++ +++|||+.++ .+...+.. +++..+
T Consensus 146 ~~~~~~~~~~~~lgps---------t~~I~~~A~~~gi~~~~l~~~~~v~lgyG~~~~------~i~~~~~~--~~s~~a 208 (727)
T PRK14016 146 LARLRELDEDERLGPS---------TAAIVDAAEARGIPYIRLGDGSLVQLGYGKYQR------RIQAAETD--QTSAIA 208 (727)
T ss_pred HHHHHHHHHhcccCCC---------HHHHHHHHHHcCCCEEEeCCCCeEecCCcHHHH------HHHHhcCC--CCcHHH
Confidence 3578889999999763 358999999999988 9999998774 33444443 789999
Q ss_pred HHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEE-ECCHhHHHHHHHHHHHHH
Q psy3968 74 VQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRV-VRKMEDVEENFQRASSEA 152 (1080)
Q Consensus 74 i~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~i-v~s~eeL~~a~~~~~~~a 152 (1080)
+.++.||..++++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|++|+||++ +++.+++.++++.+...
T Consensus 209 ~~i~~DK~~tk~lL~~~GIPvP~~--~~v~s~~~a~~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~- 285 (727)
T PRK14016 209 VDIACDKELTKRLLAAAGVPVPEG--RVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE- 285 (727)
T ss_pred HHHhCCHHHHHHHHHHCCcCCCCe--eEeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh-
Confidence 999999999999999999999998 46889999999999999999999999999999998 99999999999887653
Q ss_pred HHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccc-------------------cccc---c----------
Q psy3968 153 KAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSV-------------------QRRH---Q---------- 200 (1080)
Q Consensus 153 ~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~-------------------~~~~---~---------- 200 (1080)
...++||+||+| +++.+-++ +|+++....|.... .++. .
T Consensus 286 -----~~~viVEe~I~G-~d~Rv~Vv---gg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~ 356 (727)
T PRK14016 286 -----SSDVIVERYIPG-KDHRLLVV---GGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDD 356 (727)
T ss_pred -----CCeEEEEEecCC-ceEEEEEE---CCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCH
Confidence 357999999999 78887665 34566554442210 0000 0
Q ss_pred ----------EEEEEcC-------------------CCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC------C
Q psy3968 201 ----------KVVEIAP-------------------APHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE------S 245 (1080)
Q Consensus 201 ----------~~~~~~P-------------------a~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~------d 245 (1080)
...+..| +...++.+.+++.+.|.++++.+|+. .+.||++.+. +
T Consensus 357 ~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~~~d~td~i~~~~~~~a~~aa~~~gl~-~~GvDi~~~di~~p~~~ 435 (727)
T PRK14016 357 IALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGTAIDVTDEVHPENAAIAERAAKIIGLD-IAGVDVVCEDISKPLEE 435 (727)
T ss_pred HHHHHHHHcCCCccccCCCCCEEEEeccccccCCCeeEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecCccccccc
Confidence 0000001 11234566778899999999999995 5569998853 2
Q ss_pred CCEEEEEEeccCCCCccc-hhcccCCCHHHHHHHHHc
Q psy3968 246 GQFYFIEVNARLQVEHTV-TEEITGVDLVQSQIRVAE 281 (1080)
Q Consensus 246 G~~~~iEvNpR~~g~~~~-~e~~tGvdl~~~~l~~al 281 (1080)
....++|||..++-.... -....+.|....++....
T Consensus 436 ~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~Iid~L~ 472 (727)
T PRK14016 436 QGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAIVDMLF 472 (727)
T ss_pred CCcEEEEEcCCcchhhccCCCCCcchhHHHHHHHHhc
Confidence 237999999999764322 223456777777777643
No 132
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=99.77 E-value=1.9e-19 Score=200.05 Aligned_cols=177 Identities=54% Similarity=0.902 Sum_probs=147.9
Q ss_pred eeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceec
Q psy3968 809 LMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLR 888 (1080)
Q Consensus 809 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~ 888 (1080)
|+|||+|||+||+++++++..+...+++.+++. |++.||++++++|++.+|+..++|+++.-++.......+++
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~--Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~---- 74 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEA--GFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQ---- 74 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHc--CCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCcee----
Confidence 589999999999999999999999998888875 79999999999999999999998876421111111111000
Q ss_pred cccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 889 GANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
T Consensus 75 -------------------------------------------------------------------------------- 74 (275)
T cd07937 75 -------------------------------------------------------------------------------- 74 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCH
Q psy3968 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDL 1048 (1080)
Q Consensus 969 ~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1080)
.-.+..+...+..+|.+..+.+.+++.+.|+|..+||+.+||++|++.+++.+|+.|..++.++||+.+ +.||.
T Consensus 75 ~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~------~~~~~ 148 (275)
T cd07937 75 MLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS------PVHTL 148 (275)
T ss_pred hhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC------CCCCH
Confidence 012223445556789999999999999999999999999999999999999999999999999999864 47999
Q ss_pred HHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1049 KYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1049 ~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+||.++++++.++|+|.|+|+| .|+++|.
T Consensus 149 ~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~ 178 (275)
T cd07937 149 EYYVKLAKELEDMGADSICIKDMAGLLTPY 178 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 9999999999999999999999 9999995
No 133
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.76 E-value=2.9e-18 Score=175.85 Aligned_cols=158 Identities=23% Similarity=0.393 Sum_probs=92.4
Q ss_pred hcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhc
Q psy3968 77 MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAF 156 (1080)
Q Consensus 77 ~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~ 156 (1080)
|.||.++.++|+++|||+|... ..... ....+|+|+||.+|+||.|++++++.+++...+..
T Consensus 1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~--------- 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK--------- 62 (161)
T ss_dssp -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence 6899999999999999999331 11111 11378999999999999999999999988765433
Q ss_pred CCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecccc--ccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCc
Q psy3968 157 GNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQ--RRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-GYS 233 (1080)
Q Consensus 157 g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~--~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~ 233 (1080)
..++|+||+| .+++++++.++++..+..+.+..... ..+...+...|.. .....++.+++.++++++ |+.
T Consensus 63 ---~~i~Qe~i~G-~~~Sv~~l~~~~~~~~l~~~rq~i~~~~~~~~~~G~~~~~~---~~~~~~~~~~~~~i~~~l~gl~ 135 (161)
T PF02655_consen 63 ---LRIVQEFIEG-EPYSVSFLASGGGARLLGVNRQLIGNDDGRFRYCGGIVPAD---TPLKEEIIELARRIAEALPGLR 135 (161)
T ss_dssp -----EEEE---S-EEEEEEEEE-SSSEEEEEEEEEEEET----TEEEEEEES-------HHHHHHHHHHHHHTTSTT--
T ss_pred ---ceEEeeeeCC-EEeEEEEEEeCCceEEEEechHhhccccceeeecccccccC---CchHHHHHHHHHHHHHHcCCCe
Confidence 2399999999 89999999986655544444432221 2245566677763 234789999999999999 999
Q ss_pred ceEEEEEEEcCCCCEEEEEEeccCCCC
Q psy3968 234 NAGTVEFLCDESGQFYFIEVNARLQVE 260 (1080)
Q Consensus 234 G~~~vEfivd~dG~~~~iEvNpR~~g~ 260 (1080)
|.+.|||++++ +++|+||||||++++
T Consensus 136 G~~giD~I~~~-~~~~viEINPR~t~S 161 (161)
T PF02655_consen 136 GYVGIDFILDD-GGPYVIEINPRFTGS 161 (161)
T ss_dssp EEEEEEEEESS--SEEEEEEESS--GG
T ss_pred eeEeEEEEEeC-CcEEEEEEcCCCCCC
Confidence 99999999986 569999999999863
No 134
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.76 E-value=2.9e-18 Score=207.40 Aligned_cols=248 Identities=16% Similarity=0.225 Sum_probs=172.4
Q ss_pred ceEEEccCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCC--ccc-ccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHH
Q psy3968 9 DESYLVGKGLPPVEAYLNI--PEIIRVAKENDVDAIHPGYG--FLS-ERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAA 83 (1080)
Q Consensus 9 Dea~~v~~~~~~~~~yld~--e~Ii~~a~~~~iDaVipg~g--~ls-E~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~ 83 (1080)
||+++++|++ . .+ ++. +.|++.|++.++++++...+ ++. ....-+..+.. .+. .-+++.++.++.||..+
T Consensus 227 ~~~~~~g~~~-~-~~-l~~y~~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~~-s~~-~~~s~~ai~~~~DK~~t 301 (547)
T TIGR03103 227 NERLFSGPAP-E-AD-LNPYARIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCRE-SLS-ELTSAVAMSLCDDKRLT 301 (547)
T ss_pred CcccccCCCc-c-cc-cCHHHHHHHHHHHHcCCcEEEECCCCCEEEecCCceEEEEEe-ccC-CCCCHHHHHHhcCHHHH
Confidence 8999998643 2 22 777 89999999999999996532 110 00000111111 111 12689999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEE-ECCHhHHHHHHHHHHHHHHHhcCCCcEE
Q psy3968 84 RQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRV-VRKMEDVEENFQRASSEAKAAFGNGAMF 162 (1080)
Q Consensus 84 r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~i-v~s~eeL~~a~~~~~~~a~~~~g~~~vl 162 (1080)
+++|+++|||+|++ ..+.+.+++.++++++| |+||||..|++|+||++ +++.+++.++++.+.+. ...++
T Consensus 302 k~lL~~aGIpVP~~--~~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~------~~~vl 372 (547)
T TIGR03103 302 RRLVSEAGLQVPEQ--QLAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF------CDRVL 372 (547)
T ss_pred HHHHHHcCcCCCCE--EEECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc------CCcEE
Confidence 99999999999998 45788999999999998 69999999999999997 99999999999887653 34799
Q ss_pred EeeccCCCcEEEEEEEEecCCcEEEEEeeeccc------------------cc---------------------------
Q psy3968 163 IEKFIERPRHIEVQLLGDKAGNVVHLYERDCSV------------------QR--------------------------- 197 (1080)
Q Consensus 163 VEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~------------------~~--------------------------- 197 (1080)
+|+||+| .++.+-++. |+++....|.... .+
T Consensus 373 vEe~i~G-~d~Rv~Vig---g~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~ 448 (547)
T TIGR03103 373 LERYVPG-EDLRLVVID---FEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDL 448 (547)
T ss_pred EEEeccC-CeEEEEEEC---CEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCc
Confidence 9999999 777665552 2444332221100 00
Q ss_pred -----cccEEEE--------EcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC-C-CCEEEEEEeccCCCCcc
Q psy3968 198 -----RHQKVVE--------IAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-S-GQFYFIEVNARLQVEHT 262 (1080)
Q Consensus 198 -----~~~~~~~--------~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-d-G~~~~iEvNpR~~g~~~ 262 (1080)
..+.+.- ...+..+++++..++.++|.++++++|+.- +.||++++. + ..+.|||+|.|++=..+
T Consensus 449 ~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~gl~~-~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 449 DDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARALDIPV-VGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred cccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHhCCCe-EEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 0000000 000112455677899999999999999974 459999864 2 23699999999985322
Q ss_pred chhcccCCCHHHHHHHHH
Q psy3968 263 VTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 263 ~~e~~tGvdl~~~~l~~a 280 (1080)
..-|..+..+++.
T Consensus 528 -----~~~~~~~~~~d~l 540 (547)
T TIGR03103 528 -----EPQPTAERFIDLL 540 (547)
T ss_pred -----CCCchHHHHHHHh
Confidence 2346666666655
No 135
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.75 E-value=1.8e-18 Score=171.93 Aligned_cols=69 Identities=36% Similarity=0.492 Sum_probs=66.7
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+.+.|+|||+|++++++|++||+|++||+||+||||||||+|.||.+|+|++|+|+ +.|+.||+|++|.
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999 9999999999884
No 136
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=6e-16 Score=174.51 Aligned_cols=228 Identities=24% Similarity=0.385 Sum_probs=162.6
Q ss_pred cCCCEEEeCCCcccc-cHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-
Q psy3968 37 NDVDAIHPGYGFLSE-RSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK- 114 (1080)
Q Consensus 37 ~~iDaVipg~g~lsE-~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~- 114 (1080)
...|++++-.+.... ...+++.++..|..++ ++++++..|+||..+.+++..+|+|+|++ ....+.+++..+.++
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T--~i~~~~~~~~~~~~~~ 153 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPT--LITRDPDEAAEFVAEH 153 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCE--EEEcCHHHHHHHHHHh
Confidence 367888887552222 2556778888999998 99999999999999999999999999998 567777677666654
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHh-HHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEE--ee
Q psy3968 115 YGLPVIFKAAYGGGGRGMRVVRKME-DVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLY--ER 191 (1080)
Q Consensus 115 igfPvVVKP~~g~Gg~GV~iv~s~e-eL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~--~r 191 (1080)
+|||+|+||.+|++|+||++|++.+ ++.+.++..... +...+++|+||+-+..-...++.. ++.++..+ .|
T Consensus 154 ~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~-~~~~~~~y~~~R 227 (318)
T COG0189 154 LGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVG-GGEVVAIYALAR 227 (318)
T ss_pred cCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEe-CCEEeEEeeecc
Confidence 6799999999999999999999999 888777765432 223699999999764333333322 34555532 22
Q ss_pred ec--cccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccC
Q psy3968 192 DC--SVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITG 269 (1080)
Q Consensus 192 ~~--~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tG 269 (1080)
-. .-.+.+...+..+....++ ++++++|.+++.+||+. .+.||++.+.+| +|++|||..+++-..+ +..+|
T Consensus 228 ~~~~~~~R~N~a~Gg~~e~~~l~----~e~~elA~kaa~~lGl~-~~GVDiie~~~g-~~V~EVN~sP~~~~~i-~~~~g 300 (318)
T COG0189 228 IPASGDFRSNLARGGRAEPCELT----EEEEELAVKAAPALGLG-LVGVDIIEDKDG-LYVTEVNVSPTGKGEI-ERVTG 300 (318)
T ss_pred ccCCCCceeeccccccccccCCC----HHHHHHHHHHHHHhCCe-EEEEEEEecCCC-cEEEEEeCCCccccch-hhhcC
Confidence 11 1111111111122222345 57888999999999884 555999999666 9999999966654444 45678
Q ss_pred CCHHHHHHHHH
Q psy3968 270 VDLVQSQIRVA 280 (1080)
Q Consensus 270 vdl~~~~l~~a 280 (1080)
+|....+++..
T Consensus 301 ~~~~~~~~~~i 311 (318)
T COG0189 301 VNIAGLIIDAI 311 (318)
T ss_pred CchHHHHHHHH
Confidence 88888777654
No 137
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.70 E-value=1.6e-16 Score=167.56 Aligned_cols=183 Identities=25% Similarity=0.441 Sum_probs=109.0
Q ss_pred hcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHh
Q psy3968 77 MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY-GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAA 155 (1080)
Q Consensus 77 ~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i-gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~ 155 (1080)
+.||..+.++|+++|||+|++ ..+.+.+++.++++++ +||+|+||..|+.|+||.++++.+++...++.....
T Consensus 1 a~dK~~~~~~l~~~gipvP~t--~~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~---- 74 (190)
T PF08443_consen 1 AEDKLLTLQLLAKAGIPVPET--RVTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL---- 74 (190)
T ss_dssp -HBHHHHHHHHHHTT-----E--EEESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred CCCHHHHHHHHHHCCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc----
Confidence 469999999999999999998 5688999999999999 899999999999999999999999999887764321
Q ss_pred cCCCcEEEeeccCCCc--EEEEEEEEecCCcEEEEEeeeccc--cccc-cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q psy3968 156 FGNGAMFIEKFIERPR--HIEVQLLGDKAGNVVHLYERDCSV--QRRH-QKVVEIAPAPHLDINVRNKMTDLAVKLAKHV 230 (1080)
Q Consensus 156 ~g~~~vlVEeyI~G~~--ei~v~vl~d~~G~vv~l~~r~~~~--~~~~-~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al 230 (1080)
+..+++|+||+... ++.|-++. |+++..+.|.-.- .+.. .......|. .++ +++.+.+.++++++
T Consensus 75 --~~~~~~Q~fI~~~~g~d~Rv~Vig---~~vv~a~~r~~~~~d~r~n~~~g~~~~~~-~l~----~e~~~~a~~~~~~l 144 (190)
T PF08443_consen 75 --ENPILVQEFIPKDGGRDLRVYVIG---GKVVGAYRRSSPEGDFRTNLSRGGKVEPY-DLP----EEIKELALKAARAL 144 (190)
T ss_dssp --TTT-EEEE----SS---EEEEEET---TEEEEEEE------------------EE---------HHHHHHHHHHHHHT
T ss_pred --cCcceEeccccCCCCcEEEEEEEC---CEEEEEEEEecCcccchhhhccCceEEEe-cCC----HHHHHHHHHHHHHh
Confidence 46789999999753 78877774 3666655543111 1111 111112232 233 57888999999999
Q ss_pred CCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHH
Q psy3968 231 GYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 231 g~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~ 279 (1080)
|+. .+.||++.+ ++++||+|||+.++ +..++..+|+|+.+.+++.
T Consensus 145 gl~-~~giDi~~~-~~~~~v~EvN~~~~--~~~~~~~~g~~i~~~i~~y 189 (190)
T PF08443_consen 145 GLD-FAGIDILDT-NDGPYVLEVNPNPG--FRGIEEATGIDIAEEIAEY 189 (190)
T ss_dssp T-S-EEEEEEEEE-TTEEEEEEEETT-----TTHHHHH---HHHHHHHH
T ss_pred CCC-EEEEEEEec-CCCeEEEEecCCch--HhHHHHHHCcCHHHHHHhh
Confidence 985 566996655 45599999999876 4456778999999988764
No 138
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.63 E-value=1.1e-14 Score=151.75 Aligned_cols=207 Identities=18% Similarity=0.212 Sum_probs=150.2
Q ss_pred CCCEEE-eCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhC
Q psy3968 38 DVDAIH-PGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYG 116 (1080)
Q Consensus 38 ~iDaVi-pg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ig 116 (1080)
++|+-+ ...+.......+.+..++. +..+|+|+++++.|.||+.+.+.++.+ +++|+++. ....+
T Consensus 73 ~~Da~LvIAPEdd~lLy~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~e------------~~~~~ 138 (307)
T COG1821 73 KADATLVIAPEDDGLLYSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTRE------------WAEEP 138 (307)
T ss_pred cCCeeEEEecCcCChHHHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCccc------------cccCC
Confidence 677532 2332222335677777776 777899999999999999999999999 99998741 11234
Q ss_pred CcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecC-CcEEEEEeeeccc
Q psy3968 117 LPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA-GNVVHLYERDCSV 195 (1080)
Q Consensus 117 fPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~-G~vv~l~~r~~~~ 195 (1080)
--.|+||++|+||.|+.+..+..++ .++|+||+| .|.+|+ +.+|. -.++.+ .|....
T Consensus 139 ~k~ViKp~dgCgge~i~~~~~~pd~-------------------~i~qEfIeG-~~lSVS-L~~GEkv~pLsv-NrQfi~ 196 (307)
T COG1821 139 KKYVIKPADGCGGEGILFGRDFPDI-------------------EIAQEFIEG-EHLSVS-LSVGEKVLPLSV-NRQFII 196 (307)
T ss_pred ceEEecccccCCcceeeccCCCcch-------------------hhHHHhcCC-cceEEE-EecCCcccccee-chhhhh
Confidence 5689999999999999988776653 478999999 899999 44433 222222 221111
Q ss_pred cccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC-CcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHH
Q psy3968 196 QRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVG-YSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQ 274 (1080)
Q Consensus 196 ~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg-~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~ 274 (1080)
...........++| ++.++.+++.+.|.+.++.++ +.|...||+++. | +||+||||||+.-..--...+++-++.+
T Consensus 197 ~~~~~~~y~gg~~p-i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls-D-~pYvIEINpR~TTp~vg~sr~~~~sv~~ 273 (307)
T COG1821 197 FAGSELVYNGGRTP-IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS-D-EPYVIEINPRPTTPTVGLSRVTPESVAE 273 (307)
T ss_pred hccceeeeccCcCC-CCcHHHHHHHHHHHHHHHhhccccceeeEEEEec-C-CcEEEEecCCCCcceeeeeccccHHHHH
Confidence 11122223344443 677999999999999999995 999999999997 4 5999999999986555456678888888
Q ss_pred HHHHHHcCC
Q psy3968 275 SQIRVAEGM 283 (1080)
Q Consensus 275 ~~l~~alG~ 283 (1080)
+++.-..|.
T Consensus 274 LLl~~~~g~ 282 (307)
T COG1821 274 LLLEGPTGK 282 (307)
T ss_pred HHhcCcccc
Confidence 888777666
No 139
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.62 E-value=3.9e-15 Score=144.66 Aligned_cols=68 Identities=29% Similarity=0.512 Sum_probs=65.5
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
++..|+|||+|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.+++++ +.|..|++|++|
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 55679999999999999999999999999999999999999999999999999999 999999999987
No 140
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=99.60 E-value=5.2e-15 Score=156.44 Aligned_cols=238 Identities=17% Similarity=0.197 Sum_probs=165.7
Q ss_pred HHHHHHHHHHcCCCE---EEeCCCcccccHHHHHHHHH-cCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 27 IPEIIRVAKENDVDA---IHPGYGFLSERSDFAQAVLD-AGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 27 ~e~Ii~~a~~~~iDa---Vipg~g~lsE~~~~a~~l~~-~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
+..+.++|.+++-.. |-.|.|..--.....+.+.+ ..++ -|+...++.+.+|-.+.+.+.+.|+|+|+++ .+
T Consensus 60 iafLrd~Aekhglkg~LLva~GDgev~lvSq~reeLSa~f~v~--lp~w~~l~wlceKPllY~ra~elgl~~P~Ty--~v 135 (415)
T COG3919 60 IAFLRDFAEKHGLKGYLLVACGDGEVLLVSQYREELSAFFEVP--LPDWALLRWLCEKPLLYNRAEELGLPYPKTY--LV 135 (415)
T ss_pred HHHHHHHHhhcCcCceEEEecCCceeeehHhhHHHHHHHhcCC--CCcHHHHHHHhhCcHHHHHHHHhCCCCcceE--Ee
Confidence 678899999987663 22233321101222233322 3444 5799999999999999999999999999985 46
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCC-----CcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcE--EEE
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGG-----GRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRH--IEV 175 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~G-----g~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~e--i~v 175 (1080)
+|..+. .+.++.||+|+||-.|+| -...+.+.|.+|+..++..+..+ .|.++++||+||+|.-| ++.
T Consensus 136 ~S~~d~--~~~el~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~ee----igpDnvvvQe~IPGGgE~qfsy 209 (415)
T COG3919 136 NSEIDT--LVDELTFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEE----IGPDNVVVQEFIPGGGENQFSY 209 (415)
T ss_pred cchhhh--hhhheeeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHh----cCCCceEEEEecCCCCcccchH
Confidence 665554 456889999999998884 33466788999999998887664 56789999999999644 334
Q ss_pred EEEEecCCcEEEEE-ee---eccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC-CCCEEE
Q psy3968 176 QLLGDKAGNVVHLY-ER---DCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-SGQFYF 250 (1080)
Q Consensus 176 ~vl~d~~G~vv~l~-~r---~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-dG~~~~ 250 (1080)
..+.+ +|+.+..+ .| +..+...+.....+.| + .+++.+.++++++.++++|...+||++|+ ||.+.+
T Consensus 210 aAlw~-~g~pvaeftarr~rqyPvdfgytst~vevv-----D--n~Q~i~aar~~L~si~htGlvevefK~D~RDGs~Kl 281 (415)
T COG3919 210 AALWD-KGHPVAEFTARRLRQYPVDFGYTSTVVEVV-----D--NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGSYKL 281 (415)
T ss_pred HHHHh-CCCchhhhhcchhhcCCcccccccEEEEec-----C--cHHHHHHHHHHHHhhcccceEEEEEEecCCCCceeE
Confidence 44455 34444321 11 1111111111111222 1 36889999999999999999999999998 899999
Q ss_pred EEEeccCCCCccchhcccCCCHHHHHHHHHcCC
Q psy3968 251 IEVNARLQVEHTVTEEITGVDLVQSQIRVAEGM 283 (1080)
Q Consensus 251 iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~ 283 (1080)
+|||||++....+ ..+.|+||-...++...+.
T Consensus 282 ldvNpRpw~wfgl-~taaG~nLg~~Lwa~~~~~ 313 (415)
T COG3919 282 LDVNPRPWRWFGL-VTAAGYNLGRYLWADRINN 313 (415)
T ss_pred EeecCCCcceeeE-EecccccccceEEeeecCC
Confidence 9999999876554 3467888877776665555
No 141
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.59 E-value=7.1e-15 Score=147.39 Aligned_cols=69 Identities=36% Similarity=0.504 Sum_probs=66.0
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+...|+|||+|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++ +.|..|++|+.|.
T Consensus 83 ~~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I~ 153 (153)
T PRK05641 83 GENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIELG 153 (153)
T ss_pred CCCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEeC
Confidence 45679999999999999999999999999999999999999999999999999999 9999999999873
No 142
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.57 E-value=7.5e-15 Score=129.25 Aligned_cols=66 Identities=35% Similarity=0.549 Sum_probs=63.8
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.|+|||+|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.+++++ +.|..|++|++|.
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 48999999999999999999999999999999999999999999999999999 9999999999873
No 143
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=99.56 E-value=4.8e-14 Score=162.68 Aligned_cols=160 Identities=18% Similarity=0.282 Sum_probs=124.8
Q ss_pred CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHH
Q psy3968 464 KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVA 543 (1080)
Q Consensus 464 ~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~ 543 (1080)
++|+++||.|.++|.+++.++..+++..+++++++|+|||.|+|++|+++|+.+||+++|+|++|||+|+||++++.++.
T Consensus 154 ~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~~~G~~~l~~~~~ 233 (344)
T TIGR02146 154 DRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGERNGITPLGGILA 233 (344)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeCCCCCccHHHHHH
Confidence 58999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-CCCCCCCCHHHHHHHHHHHHHHHhccC----CCCccC-------------------------CCCcCCcceeccC
Q psy3968 544 SLQG-SDIDTGLDLKDISAYSAYWEQTRQLYA----PFECTT-------------------------TMKSGNADVYLNE 593 (1080)
Q Consensus 544 ~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~~~----~~~~~~-------------------------~~~~~~~~v~~~~ 593 (1080)
.|.. .++. ..|++.+.++++.+........ |..+.. +.++....++.-.
T Consensus 234 ~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~y~~~~~s~~g~~~~~~~~~ 312 (344)
T TIGR02146 234 RLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRTYEFLPPEVFGRKRHILIAR 312 (344)
T ss_pred HHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCcccCCCCCHHHcCCcceEeeec
Confidence 8884 3554 3799999999999987533211 111000 1112222222222
Q ss_pred CCCchhhcHHHHHHHCCCCccHHHHHHHHHHHH
Q psy3968 594 IPGGQYTNLQFQAYSLGLGEFFEDVKKAYREAN 626 (1080)
Q Consensus 594 iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr 626 (1080)
-.| .+++...++++|+.-.-+++.+.+.+|+
T Consensus 313 ~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (344)
T TIGR02146 313 LTG--KHAIKARKEKLGVKLIEEELKRVTAKIK 343 (344)
T ss_pred ccc--HHHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 233 5678888999998766677777777765
No 144
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.56 E-value=1.4e-13 Score=175.40 Aligned_cols=200 Identities=25% Similarity=0.381 Sum_probs=151.8
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEE-ECCHhHHHHHHHH
Q psy3968 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRV-VRKMEDVEENFQR 147 (1080)
Q Consensus 69 ps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~i-v~s~eeL~~a~~~ 147 (1080)
.++.++.++.||..++++|+++|||+|++ ..+.+.+++.++++++|||+|+||..|++|+||.+ +++.+++.++++.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~GIpvP~~--~~~~s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~ 280 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDAGVPVPEG--TVVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEA 280 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHH
Confidence 56889999999999999999999999998 46889999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccc-------------------cccc---cE----
Q psy3968 148 ASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSV-------------------QRRH---QK---- 201 (1080)
Q Consensus 148 ~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~-------------------~~~~---~~---- 201 (1080)
+... +..++||+||+| +++.+.++. |+++....|.-.. .++. .+
T Consensus 281 a~~~------~~~vlVEefI~G-~e~rvlVv~---~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~ 350 (864)
T TIGR02068 281 AVEE------SSGVIVERFITG-RDHRLLVVG---GKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTK 350 (864)
T ss_pred HHhh------CCcEEEEEeccC-CEEEEEEEC---CEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccc
Confidence 7653 357999999999 899987763 4666665543211 0000 00
Q ss_pred ----------------EEEEcCC-------------------CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC--
Q psy3968 202 ----------------VVEIAPA-------------------PHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-- 244 (1080)
Q Consensus 202 ----------------~~~~~Pa-------------------~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-- 244 (1080)
..+..|. ...++++..+..+.|.++++.+|++-+ .||++...
T Consensus 351 i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~i~~~~~~~a~~aa~~~gl~i~-gvD~i~~di~ 429 (864)
T TIGR02068 351 IRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENAATAVRAAKIIGLDIA-GVDIVTEDIS 429 (864)
T ss_pred cCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCceEecccccCHHHHHHHHHHHHHhCCCeE-EEEEEecCCC
Confidence 0001111 123567778899999999999999754 49998752
Q ss_pred ----CCCEEEEEEeccCCCC-ccchhcccCCCHHHHHHHHHc
Q psy3968 245 ----SGQFYFIEVNARLQVE-HTVTEEITGVDLVQSQIRVAE 281 (1080)
Q Consensus 245 ----dG~~~~iEvNpR~~g~-~~~~e~~tGvdl~~~~l~~al 281 (1080)
+....+||+|+.++-. |..-..-.+.+....+++...
T Consensus 430 ~~~~~~~~~iiEvN~~p~~~~h~~p~~g~~r~v~~~Il~~lf 471 (864)
T TIGR02068 430 RPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVARAIVDMLF 471 (864)
T ss_pred CCccccCcEEEEEcCCcchhhcccccCCCCeeHHHHHHHHhc
Confidence 2236899999998863 433333457888888888764
No 145
>PRK12458 glutathione synthetase; Provisional
Probab=99.55 E-value=2.5e-13 Score=155.55 Aligned_cols=220 Identities=16% Similarity=0.170 Sum_probs=146.5
Q ss_pred CCCEEEeCCC--cccccHHHHH--------HHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q psy3968 38 DVDAIHPGYG--FLSERSDFAQ--------AVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEE 107 (1080)
Q Consensus 38 ~iDaVipg~g--~lsE~~~~a~--------~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee 107 (1080)
.+|+|++-.+ +..+...++. .++..|++++ +++++++.+.||..+.++++ +++|++ ....+.++
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T--~v~~~~~~ 152 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTT--HISRNKEY 152 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCE--EEeCCHHH
Confidence 5899998643 3222222222 2245688777 99999999999999977665 678877 45678899
Q ss_pred HHHHHHHhCCc-EEEEeCCCCCCcCeEEECCHhH--HHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCc
Q psy3968 108 AMEFCLKYGLP-VIFKAAYGGGGRGMRVVRKMED--VEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGN 184 (1080)
Q Consensus 108 ~~~~~~~igfP-vVVKP~~g~Gg~GV~iv~s~ee--L~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~ 184 (1080)
+.++++++++| +|+||..|+||+||+++++.++ +...++.... ...+++|+||++..+.++.++.- +|+
T Consensus 153 ~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv-~g~ 224 (338)
T PRK12458 153 IREFLEESPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL-NGE 224 (338)
T ss_pred HHHHHHHcCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE-CCE
Confidence 99999999775 9999999999999999987664 4444443221 35799999999754444544432 456
Q ss_pred EE------EEEeeeccc--cccccEE-EEEcCCCCCCHHHHHHHHHHHHHHHHHc---CCcceEEEEEEEcCCCCEEEEE
Q psy3968 185 VV------HLYERDCSV--QRRHQKV-VEIAPAPHLDINVRNKMTDLAVKLAKHV---GYSNAGTVEFLCDESGQFYFIE 252 (1080)
Q Consensus 185 vv------~l~~r~~~~--~~~~~~~-~~~~Pa~~l~~~~~~~l~~~a~~i~~al---g~~G~~~vEfivd~dG~~~~iE 252 (1080)
++ +...|.... .+.+... ....+. .+++ +..++|.++...+ |+. .+.||++ | .+++|
T Consensus 225 ~v~~~g~~~a~~R~~~~~d~RsN~~~Gg~~~~~-~l~~----~~~~ia~~~~~~l~~~GL~-~~gVDli----~-~~l~E 293 (338)
T PRK12458 225 PLERDGHYAAMRRVPAGGDVRSNVHAGGSVVKH-TLTK----EELELCEAIRPKLVRDGLF-FVGLDIV----G-DKLVE 293 (338)
T ss_pred EEeeccceeEEEEecCCCCeeecccCCCcccCc-CCCH----HHHHHHHHHHHHHhhcCCe-EEeEEEE----C-CEEEE
Confidence 66 554442111 1111111 112222 3443 5566666665555 654 5669997 2 26899
Q ss_pred EeccCCCCccchhcccCCCHHHHHHHHHcC
Q psy3968 253 VNARLQVEHTVTEEITGVDLVQSQIRVAEG 282 (1080)
Q Consensus 253 vNpR~~g~~~~~e~~tGvdl~~~~l~~alG 282 (1080)
||++.+++...++..+|+|+....++...-
T Consensus 294 IN~~sp~g~~~~~~~~g~d~a~~i~~~i~~ 323 (338)
T PRK12458 294 VNVFSPGGLTRINKLNKIDFVEDIIEALER 323 (338)
T ss_pred EeCCCcchHHHHHHHhCCCHHHHHHHHHHH
Confidence 999977766656778999999999987643
No 146
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.54 E-value=1.7e-13 Score=167.82 Aligned_cols=198 Identities=20% Similarity=0.299 Sum_probs=142.4
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEeCCCCCCcCeEEECC---HhHHHHH
Q psy3968 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY-GLPVIFKAAYGGGGRGMRVVRK---MEDVEEN 144 (1080)
Q Consensus 69 ps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i-gfPvVVKP~~g~Gg~GV~iv~s---~eeL~~a 144 (1080)
.+..++.+|.||..+|++|+++|||+|++ ..+.+.+++.+....+ +||+||||..|++|+||.++.+ .+++.++
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g--~~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A 542 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEAGFRVPFG--DEFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA 542 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHcCcCCCCE--EEECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence 46788899999999999999999999998 5678887777766666 7999999999999999999876 7888888
Q ss_pred HHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecc-cc-------------------cc--cc--
Q psy3968 145 FQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCS-VQ-------------------RR--HQ-- 200 (1080)
Q Consensus 145 ~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~-~~-------------------~~--~~-- 200 (1080)
+..++.. +..++||+||+| +|+++.|+.+ +++.+..|.-. +. |. +.
T Consensus 543 l~~A~~~------~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~p 612 (737)
T TIGR01435 543 LNIAFSE------DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKP 612 (737)
T ss_pred HHHHHhc------CCeEEEEecccC-CEEEEEEECC---eEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCC
Confidence 8776542 457999999999 8999988853 45554333100 00 00 00
Q ss_pred --E---------------EEEEcCC-------------------CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC
Q psy3968 201 --K---------------VVEIAPA-------------------PHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE 244 (1080)
Q Consensus 201 --~---------------~~~~~Pa-------------------~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~ 244 (1080)
+ ..+..|. ..+++++.....++|.++++++|+. .+.||+++..
T Consensus 613 l~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~-i~GVDii~~d 691 (737)
T TIGR01435 613 LEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAA-ICGVDLIIPD 691 (737)
T ss_pred cccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCC-EEEEEEEecC
Confidence 0 0011111 1355677889999999999999997 6779999853
Q ss_pred C--------CCEEEEEEeccCCCC-ccchhcccCCCHHHHHHHH
Q psy3968 245 S--------GQFYFIEVNARLQVE-HTVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 245 d--------G~~~~iEvNpR~~g~-~~~~e~~tGvdl~~~~l~~ 279 (1080)
- ..+.+||+|++++-. |..=..-.+.|+...+++.
T Consensus 692 i~~p~~~~~~~~~iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~ 735 (737)
T TIGR01435 692 ETIPDTDKHAIWGVIEANFNPAMHMHCFPYAGEKRRLTDKVIKF 735 (737)
T ss_pred CCCCccccccceEEEEEcCCcchhhhcCCCCCCCcchHHHHHHh
Confidence 1 226799999999863 3332233455666665543
No 147
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.51 E-value=3.1e-13 Score=168.31 Aligned_cols=241 Identities=20% Similarity=0.270 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCC--ccccc-HHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCC
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYG--FLSER-SDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGP 101 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g--~lsE~-~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~ 101 (1080)
++-..|++.|++.++...+-... ++.-. ..-...+...+.. ..++..+...++||..++++|+++|||+|++ ..
T Consensus 432 ~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~~~t-~~~s~~s~~~~~DK~~tk~lL~~~GIpvP~~--~~ 508 (752)
T PRK02471 432 LSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNGNMT-SKDNYISPLIMENKVVTKKILAEAGFPVPAG--DE 508 (752)
T ss_pred hhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEecccc-CCCHHHHHHHhhCHHHHHHHHHHCCcCCCCE--EE
Confidence 44578999999999887765432 11100 0000000111221 2245567888999999999999999999998 45
Q ss_pred CCCHHHHHHHHHHh-CCcEEEEeCCCCCCcCeEEE---CCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEE
Q psy3968 102 ITTTEEAMEFCLKY-GLPVIFKAAYGGGGRGMRVV---RKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQL 177 (1080)
Q Consensus 102 v~s~ee~~~~~~~i-gfPvVVKP~~g~Gg~GV~iv---~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~v 177 (1080)
+.+.+++.+.+.++ |||+||||..|++|+||.++ ++.+++.+++..+++. +..++|||||+| +|++|.+
T Consensus 509 ~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~------~~~vlVEEfI~G-~E~Rv~V 581 (752)
T PRK02471 509 FTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFRE------DSSVLVEEFIVG-TEYRFFV 581 (752)
T ss_pred EcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhc------CCcEEEEecccC-CEEEEEE
Confidence 78888888777764 89999999999999999986 4688888888776542 457999999999 8999988
Q ss_pred EEecCCcEEEEEeeecc-cccc---------------------cc--------------------EEEEEcCC-------
Q psy3968 178 LGDKAGNVVHLYERDCS-VQRR---------------------HQ--------------------KVVEIAPA------- 208 (1080)
Q Consensus 178 l~d~~G~vv~l~~r~~~-~~~~---------------------~~--------------------~~~~~~Pa------- 208 (1080)
+. |+++....|.-. +..+ +. ...+..|.
T Consensus 582 ig---gkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L 658 (752)
T PRK02471 582 LD---GKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYL 658 (752)
T ss_pred EC---CEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEe
Confidence 73 456655444111 0000 00 00011111
Q ss_pred ------------CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC------CC--CEEEEEEeccCCCC-ccchhcc
Q psy3968 209 ------------PHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE------SG--QFYFIEVNARLQVE-HTVTEEI 267 (1080)
Q Consensus 209 ------------~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~------dG--~~~~iEvNpR~~g~-~~~~e~~ 267 (1080)
..+++.+...+.+.|.++++++|+.-++ ||+++.. .. +..+||+|++++-. |..=..-
T Consensus 659 ~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~~~G-vDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH~~P~~G 737 (752)
T PRK02471 659 RENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAKICG-VDLIIPDLTQPASPEHPNYGIIELNFNPAMYMHCFPYKG 737 (752)
T ss_pred cCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCCEEE-EEEEeCCCcccccccCCCeEEEEecCCCchhhccCccCC
Confidence 1355678889999999999999998544 9999864 11 47899999999863 3332222
Q ss_pred cCCCHHHHHHHH
Q psy3968 268 TGVDLVQSQIRV 279 (1080)
Q Consensus 268 tGvdl~~~~l~~ 279 (1080)
...|+.+.+++.
T Consensus 738 ~~r~v~~~i~d~ 749 (752)
T PRK02471 738 KGRRITPKILDK 749 (752)
T ss_pred CCcchHHHHHHH
Confidence 345666666554
No 148
>PRK06748 hypothetical protein; Validated
Probab=99.49 E-value=7.8e-14 Score=124.54 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=62.5
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEcc-CCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM-KMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam-Km~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.|.|||||+|++|+|++||.|++||+|++||+| |+..+|+||.+|+|.+++++ +.|..|++|++|+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 489999999999999999999999999999996 56679999999999999999 9999999999995
No 149
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.48 E-value=1.4e-13 Score=120.95 Aligned_cols=67 Identities=37% Similarity=0.523 Sum_probs=64.5
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+.|.|||+|+|++|+|++||.|++||+|+++|+|||+.++.||.+|+|.+++++ +.|..|++|++|+
T Consensus 2 ~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 2 TKVYASMAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CeEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 468999999999999999999999999999999999999999999999999999 9999999999874
No 150
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.48 E-value=5.6e-14 Score=124.67 Aligned_cols=65 Identities=42% Similarity=0.601 Sum_probs=62.2
Q ss_pred cccCCCCeEEEE------EEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 916 QVGAPMPGSVME------IRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 916 ~v~aPm~G~v~~------~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
+|++|++|.+.+ |+|++||.|++||+|+.||+|||+++|+||.+|+|.+++++ +.|..|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 588999998777 99999999999999999999999999999999999999999 999999999986
No 151
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.45 E-value=2e-13 Score=138.24 Aligned_cols=68 Identities=29% Similarity=0.344 Sum_probs=64.8
Q ss_pred CCcccCCCCeEEEE-------EEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 914 PGQVGAPMPGSVME-------IRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~-------~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
...|+|||+|++++ |+|++||.|++||+|++||||||+++|.|+.+|+|.+|+++ +.|+.|++|++|.
T Consensus 80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 45799999999998 79999999999999999999999999999999999999999 9999999999873
No 152
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.42 E-value=1.2e-11 Score=139.36 Aligned_cols=211 Identities=13% Similarity=0.224 Sum_probs=142.0
Q ss_pred HHHHHHHHHcCCCEEEeCCC-c--------------cccc--HHHHH-HHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHH
Q psy3968 28 PEIIRVAKENDVDAIHPGYG-F--------------LSER--SDFAQ-AVLDAGIRFIGPSPYVVQQMGDKVAARQAAID 89 (1080)
Q Consensus 28 e~Ii~~a~~~~iDaVipg~g-~--------------lsE~--~~~a~-~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~ 89 (1080)
..+++.|++.+++.+..-.. . .++. ..+.. ..+..|++++ +++++++.+.||..|.+.+++
T Consensus 39 ~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~ 117 (328)
T PLN02941 39 PSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVAD 117 (328)
T ss_pred HHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHH
Confidence 45788888888776554221 1 1111 11222 2334789887 899999999999999999999
Q ss_pred CC-------CCCCCCCCCCCCCHHHHH---HHHHHhCCcEEEEeCCC---CCCcCeEEECCHhHHHHHHHHHHHHHHHhc
Q psy3968 90 SG-------VPIVPGTPGPITTTEEAM---EFCLKYGLPVIFKAAYG---GGGRGMRVVRKMEDVEENFQRASSEAKAAF 156 (1080)
Q Consensus 90 ~G-------Ipvp~~~~~~v~s~ee~~---~~~~~igfPvVVKP~~g---~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~ 156 (1080)
+| ||+|++ ..+.+.+.+. .....++||+|+||..| +.|++|.++.+.+.|...
T Consensus 118 ~~~~~~~~~i~~P~t--~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l------------ 183 (328)
T PLN02941 118 LKLSDGYGSVGVPKQ--LVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL------------ 183 (328)
T ss_pred cCCcccCCCCCCCCE--EEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc------------
Confidence 99 999998 4567766543 33467899999999999 789999999999887751
Q ss_pred CCCcEEEeeccC-CCcEEEEEEEEecCCcEEEEEeeeccccccc-cEE-------------------EE---EcCCCCCC
Q psy3968 157 GNGAMFIEKFIE-RPRHIEVQLLGDKAGNVVHLYERDCSVQRRH-QKV-------------------VE---IAPAPHLD 212 (1080)
Q Consensus 157 g~~~vlVEeyI~-G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~-~~~-------------------~~---~~Pa~~l~ 212 (1080)
+.++++||||. |.+.+.|-|+++ ++..+..+...-.+.. ... .. .-|. ...
T Consensus 184 -~~p~~lQEfVnh~g~d~RVfVvGd---~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~~~-~~~ 258 (328)
T PLN02941 184 -EPPLVLQEFVNHGGVLFKVYVVGD---YVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLDPE-VAE 258 (328)
T ss_pred -CCcEEEEEecCCCCEEEEEEEECC---EEEEEEecCCcccccccccccccccccccccccccccccccccccccc-ccc
Confidence 34799999994 347788877765 3323222211000000 000 00 0000 011
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCC--CCEEEEEEeccCCC
Q psy3968 213 INVRNKMTDLAVKLAKHVGYSNAGTVEFLCDES--GQFYFIEVNARLQV 259 (1080)
Q Consensus 213 ~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~d--G~~~~iEvNpR~~g 259 (1080)
....+++.+++.++.+++|+. .+.||++.+.+ ++++++|||.-++-
T Consensus 259 ~p~~~~l~~La~~~r~alGl~-l~GvDvI~~~~~~~~~~VidVN~fP~~ 306 (328)
T PLN02941 259 LPPRPFLEDLARELRRRLGLR-LFNFDMIREHGTGDRYYVIDINYFPGY 306 (328)
T ss_pred CCChHHHHHHHHHHHHHhCCc-eEEEEEEeecCCCCceEEEEecCCCcc
Confidence 122356999999999999996 45599999863 46999999997763
No 153
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=99.42 E-value=2.3e-13 Score=150.83 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
+..+.|.+.|+|..|||++.||+++++.+++.+|+.|.+++++++-+. .++.+||+++++++.++|+|.|+|
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~G~d~i~l 160 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSH--------MASPEELAEQAKLMESYGADCVYV 160 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEecc--------CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 446788899999999999999999999999999999999999996543 378999999999999999999999
Q ss_pred ec-CCccCCCC
Q psy3968 1069 KV-RILLSPVN 1078 (1080)
Q Consensus 1069 kd-~~~~~p~~ 1078 (1080)
+| .|.++|..
T Consensus 161 ~DT~G~~~P~~ 171 (263)
T cd07943 161 TDSAGAMLPDD 171 (263)
T ss_pred cCCCCCcCHHH
Confidence 99 99999953
No 154
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.41 E-value=1.7e-11 Score=139.32 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=145.4
Q ss_pred CCCEEEeCCC--ccc---ccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q psy3968 38 DVDAIHPGYG--FLS---ERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFC 112 (1080)
Q Consensus 38 ~iDaVipg~g--~ls---E~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~ 112 (1080)
.+|+|++-.+ +.. ....+.+.++..|++++ |++++++.+.||..+.+++. ++|++ ....+.+++.+++
T Consensus 78 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T--~v~~~~~~~~~~~ 150 (312)
T TIGR01380 78 ELDAVLMRKDPPFDMEYIYATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPT--LVTRDKAEIRAFL 150 (312)
T ss_pred cCCEEEEeCCCCCChhhhHHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCE--EEeCCHHHHHHHH
Confidence 5899998653 221 12457788888999887 99999999999999887753 78887 4567899999999
Q ss_pred HHhCCcEEEEeCCCCCCcCeEEECCH-hHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC--cEEEEEEEEecCCcEEE-E
Q psy3968 113 LKYGLPVIFKAAYGGGGRGMRVVRKM-EDVEENFQRASSEAKAAFGNGAMFIEKFIERP--RHIEVQLLGDKAGNVVH-L 188 (1080)
Q Consensus 113 ~~igfPvVVKP~~g~Gg~GV~iv~s~-eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~--~ei~v~vl~d~~G~vv~-l 188 (1080)
++++ |+|+||..|++|+|++++++. .++...++... ..+...+++|+||+.. .++.+-++. |+++. .
T Consensus 151 ~~~g-~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~-----~~~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~~a 221 (312)
T TIGR01380 151 AEHG-DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT-----QRGREPVMAQRYLPEIKEGDKRILLID---GEPIGAA 221 (312)
T ss_pred HHcC-CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH-----hccCCcEEEEeccccccCCCEEEEEEC---CeEEEEE
Confidence 9998 999999999999999999763 33433333221 1234689999999842 567776663 46654 4
Q ss_pred Eeeeccc--cccccEE-EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchh
Q psy3968 189 YERDCSV--QRRHQKV-VEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTE 265 (1080)
Q Consensus 189 ~~r~~~~--~~~~~~~-~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e 265 (1080)
..|.-.. .+.+... ....|. .++++. .++.+.+...++.+|+. ++.||++ | .||+|||+--+..+.-.+
T Consensus 222 i~R~~~~gd~r~N~~~Gg~~~~~-~l~~e~-~~ia~~~~~~~~~~gl~-~agVDii----g-~~v~EvN~~~p~~~~~~~ 293 (312)
T TIGR01380 222 VARIPAGGEFRGNLAVGGRGEAT-ELSERD-REICADVAPELKRRGLL-FVGIDVI----G-GYLTEVNVTSPTGIREID 293 (312)
T ss_pred EEecCCCCCccccccCCceeecc-CCCHHH-HHHHHHHHHHHHhcCCc-EEEEEEe----C-CEEEEEecCCcchHHHHH
Confidence 4442111 1111111 223333 355432 23444444444666774 4559998 3 479999986333333356
Q ss_pred cccCCCHHHHHHHHH
Q psy3968 266 EITGVDLVQSQIRVA 280 (1080)
Q Consensus 266 ~~tGvdl~~~~l~~a 280 (1080)
..+|+|+...+++..
T Consensus 294 ~~~g~~ia~~i~d~l 308 (312)
T TIGR01380 294 RQKGVNIAGMLWDAI 308 (312)
T ss_pred hhhCCCHHHHHHHHH
Confidence 679999999988765
No 155
>PRK05246 glutathione synthetase; Provisional
Probab=99.39 E-value=2.6e-11 Score=138.23 Aligned_cols=221 Identities=17% Similarity=0.172 Sum_probs=147.7
Q ss_pred CCCEEEeCCCc--ccc---cHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q psy3968 38 DVDAIHPGYGF--LSE---RSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFC 112 (1080)
Q Consensus 38 ~iDaVipg~g~--lsE---~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~ 112 (1080)
.+|+|++..+. ..+ ...+.+.++..|++++ ++++++..+.||..+.+++. ++|++ ....+.+++.+++
T Consensus 79 ~~D~v~~R~~~~~~~~~~~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T--~~~~~~~~~~~~~ 151 (316)
T PRK05246 79 DFDVILMRKDPPFDMEYIYATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPT--LVTRDKAEIRAFR 151 (316)
T ss_pred cCCEEEEcCCCCCChHHHHHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCE--EEeCCHHHHHHHH
Confidence 48999986431 111 1335667777899887 89999999999999988765 78887 4577899999999
Q ss_pred HHhCCcEEEEeCCCCCCcCeEEECC-HhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC--cEEEEEEEEecCCcEEE-E
Q psy3968 113 LKYGLPVIFKAAYGGGGRGMRVVRK-MEDVEENFQRASSEAKAAFGNGAMFIEKFIERP--RHIEVQLLGDKAGNVVH-L 188 (1080)
Q Consensus 113 ~~igfPvVVKP~~g~Gg~GV~iv~s-~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~--~ei~v~vl~d~~G~vv~-l 188 (1080)
++++ |+|+||..|++|+||.++.. ..++...++.+.. .+..++++|+||+.. .++.+-++ +|++++ .
T Consensus 152 ~~~~-~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~-----~~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~a 222 (316)
T PRK05246 152 AEHG-DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE-----HGREPVMAQRYLPEIKEGDKRILLV---DGEPVGYA 222 (316)
T ss_pred HHCC-CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH-----ccCCeEEEEeccccCCCCCEEEEEE---CCEEhhhe
Confidence 9998 99999999999999999954 4444443333221 235689999999863 56666666 356666 5
Q ss_pred Eeeeccc--ccccc-EEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchh
Q psy3968 189 YERDCSV--QRRHQ-KVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTE 265 (1080)
Q Consensus 189 ~~r~~~~--~~~~~-~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e 265 (1080)
..|.-.. .+.+. ......|. .++++. .++...+...++.+|+. .+.||++ |. |++|||..-.+.+.-.+
T Consensus 223 ~~R~~~~~~~rtN~~~Gg~~~~~-~l~~~~-~~ia~~~~~~l~~~gl~-~~GVDli----~~-~l~EvN~~~p~~~~~~~ 294 (316)
T PRK05246 223 LARIPAGGETRGNLAAGGRGEAT-PLTERD-REICAAIGPELKERGLI-FVGIDVI----GD-YLTEINVTSPTGIREIE 294 (316)
T ss_pred eEecCCCCCcccCccCCceEecc-CCCHHH-HHHHHHHHHHHHHhCCC-EEEEEEe----CC-EEEEEeCCCchHHHHHH
Confidence 5542211 11111 11223343 355432 23333334444566664 5669998 22 69999986343466678
Q ss_pred cccCCCHHHHHHHHHcC
Q psy3968 266 EITGVDLVQSQIRVAEG 282 (1080)
Q Consensus 266 ~~tGvdl~~~~l~~alG 282 (1080)
.++|+|+....++....
T Consensus 295 ~~tg~~ia~~i~~~~~~ 311 (316)
T PRK05246 295 RLTGVDIAGMLWDAIEA 311 (316)
T ss_pred HHhCCCHHHHHHHHHHH
Confidence 88999999999987654
No 156
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.37 E-value=1.6e-12 Score=137.76 Aligned_cols=71 Identities=30% Similarity=0.371 Sum_probs=66.6
Q ss_pred CCCCCcccCCCCeEEEE-------EEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 911 KSVPGQVGAPMPGSVME-------IRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 911 ~~~~~~v~aPm~G~v~~-------~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
..+...|.|||+|+|++ |+|++||.|++||+|++||+|||+++|.||.+|+|++++++ +.|..|++|++|+
T Consensus 194 ~s~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 194 KSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cCCCCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 34456699999999999 89999999999999999999999999999999999999999 9999999999884
No 157
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.36 E-value=1.3e-12 Score=132.25 Aligned_cols=69 Identities=28% Similarity=0.327 Sum_probs=65.4
Q ss_pred CCCcccCCCCeEEEE-------EEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 913 VPGQVGAPMPGSVME-------IRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~-------~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+...|+|||+|+++. |+|++||.|++||+|++||||||+++|+||.+|+|.+++++ +.|+.|++|++|.
T Consensus 78 ~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 78 EGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 345799999999998 89999999999999999999999999999999999999999 9999999999873
No 158
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=99.33 E-value=2.5e-12 Score=143.62 Aligned_cols=85 Identities=21% Similarity=0.178 Sum_probs=74.8
Q ss_pred HHHHHHcCCChhhhccccCC--------------ccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNY--------------LPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~--------------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.++|.+.|+|..++|.+.+| +++++.+++++|+.|.+++++|||+.+. |....++.+||+++++
T Consensus 85 ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~--~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 85 LEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC--PYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC--CCCCCCCHHHHHHHHH
Confidence 35788999999999999975 4568899999999999999999999752 3323579999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++|+|.|+|+| .|+++|.
T Consensus 163 ~~~~~G~d~i~l~DT~G~~~P~ 184 (287)
T PRK05692 163 RLFALGCYEISLGDTIGVGTPG 184 (287)
T ss_pred HHHHcCCcEEEeccccCccCHH
Confidence 99999999999999 9999995
No 159
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=99.31 E-value=2.8e-12 Score=145.90 Aligned_cols=81 Identities=11% Similarity=-0.043 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
...+.|.+.|+|..||+...++.++.+..++.+|+.|.++++.++++. .|+.+++++++++++++|+|.|||
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~--------~~~~e~l~~~a~~~~~~Ga~~i~i 162 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSH--------MTPPEKLAEQAKLMESYGADCVYI 162 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEccc--------CCCHHHHHHHHHHHHhcCCCEEEE
Confidence 345789999999999999999999999999999999999999998874 599999999999999999999999
Q ss_pred ec-CCccCCC
Q psy3968 1069 KV-RILLSPV 1077 (1080)
Q Consensus 1069 kd-~~~~~p~ 1077 (1080)
+| +|.++|.
T Consensus 163 ~DT~G~~~P~ 172 (333)
T TIGR03217 163 VDSAGAMLPD 172 (333)
T ss_pred ccCCCCCCHH
Confidence 99 9999995
No 160
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.31 E-value=9.2e-11 Score=131.45 Aligned_cols=203 Identities=16% Similarity=0.180 Sum_probs=124.0
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHH----HHHHHHHHhCC-cEEEEeCCCCCCcCeEEECCHhH---
Q psy3968 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTE----EAMEFCLKYGL-PVIFKAAYGGGGRGMRVVRKMED--- 140 (1080)
Q Consensus 69 ps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~e----e~~~~~~~igf-PvVVKP~~g~Gg~GV~iv~s~ee--- 140 (1080)
++.+...++.||..+..+++++|||+|+++ .+.+.+ ++.+++. ++ |+|+||..|++|+||.++++.++
T Consensus 27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~--~~~s~~~~~~~l~~~~~--~~~~VVVKPl~Gs~GrGI~~i~~~~~~~~ 102 (317)
T TIGR02291 27 NKRSLYPLVDDKLKTKIIAQAAGITVPELY--GVIHNQAEVKTIHNIVK--DHPDFVIKPAQGSGGKGILVITSRKDGRY 102 (317)
T ss_pred CCchhccccccHHHHHHHHHHcCCCCCCEE--EecCchhhHHHHHHHHc--cCCCEEEEECCCCCccCeEEEEecccccc
Confidence 778888899999999999999999999974 344433 3333333 45 69999999999999999976544
Q ss_pred ------------HHHHHHHHHHHHHHhcCC-CcEEEeeccCCC-----------cEEEEEEEEecCCcEEEEEeeecc--
Q psy3968 141 ------------VEENFQRASSEAKAAFGN-GAMFIEKFIERP-----------RHIEVQLLGDKAGNVVHLYERDCS-- 194 (1080)
Q Consensus 141 ------------L~~a~~~~~~~a~~~~g~-~~vlVEeyI~G~-----------~ei~v~vl~d~~G~vv~l~~r~~~-- 194 (1080)
++..+..+...-....+. +.+++|+++... +.+.|-++.+ ..+....|...
T Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~---~~vaa~~R~~~~~ 179 (317)
T TIGR02291 103 RKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKG---YPVMAMMRLPTRA 179 (317)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECC---EEEEEEEEccCcc
Confidence 333333221111111122 235565544432 3445555532 33333333110
Q ss_pred -ccccc----cEEE-------------------EEcCC-----CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCC
Q psy3968 195 -VQRRH----QKVV-------------------EIAPA-----PHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDES 245 (1080)
Q Consensus 195 -~~~~~----~~~~-------------------~~~Pa-----~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~d 245 (1080)
..+.+ .... ..-|. ..+..+..+++.++|.++.+++|+ |.+.+|++++.+
T Consensus 180 ~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~-~~~GvDii~~~~ 258 (317)
T TIGR02291 180 SDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGL-GYMGVDMVLDKE 258 (317)
T ss_pred CCcccccccCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCC-CeEEEEEEEeCC
Confidence 01111 0011 00011 012335667899999999999998 899999999877
Q ss_pred CCEEEEEEeccCCCCccchhcccCCCHHHHHHHHH
Q psy3968 246 GQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 246 G~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~a 280 (1080)
+.++++|+|++++-+.. .....|++-.-..+...
T Consensus 259 ~g~~VlEVN~~Pg~t~~-~a~~~Gl~~~~~~~~~~ 292 (317)
T TIGR02291 259 EGPLVLELNARPGLAIQ-IANGAGLLPRLKHIEAR 292 (317)
T ss_pred CCEEEEEeCCCCCCCHH-HHHHCCCcHHHHHHHHh
Confidence 67999999999876632 23445666555555543
No 161
>PRK07051 hypothetical protein; Validated
Probab=99.30 E-value=5.8e-12 Score=113.50 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=64.4
Q ss_pred CcccCCCCeEEEE-------EEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 915 GQVGAPMPGSVME-------IRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 915 ~~v~aPm~G~v~~-------~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
..++||++|++++ ++|++||.|++||+++.+|+|||+++|+||.+|+|.++.++ +.|..|++|++++
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 4689999999999 99999999999999999999999999999999999999999 9999999999884
No 162
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=99.29 E-value=4.4e-12 Score=144.67 Aligned_cols=81 Identities=12% Similarity=0.002 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
.-.+.|.+.|+|..||+...|+.++++..++.+|+.|..+++.++++. .|+.++|+++++++.++|+|.|+|
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~--------~~~~e~l~~~a~~~~~~Ga~~i~i 163 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSH--------MAPPEKLAEQAKLMESYGAQCVYV 163 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEecc--------CCCHHHHHHHHHHHHhCCCCEEEe
Confidence 345789999999999999999999999999999999999999999884 589999999999999999999999
Q ss_pred ec-CCccCCC
Q psy3968 1069 KV-RILLSPV 1077 (1080)
Q Consensus 1069 kd-~~~~~p~ 1077 (1080)
+| +|.++|.
T Consensus 164 ~DT~G~~~P~ 173 (337)
T PRK08195 164 VDSAGALLPE 173 (337)
T ss_pred CCCCCCCCHH
Confidence 99 9999995
No 163
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.18 E-value=4.2e-11 Score=139.66 Aligned_cols=91 Identities=22% Similarity=0.217 Sum_probs=78.7
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc---------------
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD--------------- 984 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~--------------- 984 (1080)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++ +.|..|++|++|+..+
T Consensus 16 eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~~~~~~~~~~~~~~ 95 (407)
T PRK05704 16 EATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAA 95 (407)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCcccccCCCCCCCCCC
Confidence 49999999999999999999999999999999999999999999999 9999999999994211
Q ss_pred ----------------h--hHHHHHHHHHHcCCChhhhccccCCcc
Q psy3968 985 ----------------N--VVYKFCDLSVQVGMDVFRVFDSLNYLP 1012 (1080)
Q Consensus 985 ----------------~--~~~~~~~~a~~~gid~~~v~~~ln~~~ 1012 (1080)
. ..+.+|++|+|+|||+..|--+=.+=|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~Gr 141 (407)
T PRK05704 96 AAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGR 141 (407)
T ss_pred CCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCc
Confidence 0 135788899999999998855444333
No 164
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=99.18 E-value=2.4e-11 Score=134.55 Aligned_cols=81 Identities=14% Similarity=0.025 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
...+.|.+.|+|..|||+.+|+++++..+++.+|+.|..+..+++++. .|+.+||.++++++.++|++.|||
T Consensus 86 ~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~--------~~~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 86 DLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS--------GYSDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred HHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec--------CCCHHHHHHHHHHHHhCCCCEEEE
Confidence 455678999999999999999999999999999999999999999986 399999999999999999999999
Q ss_pred ec-CCccCCC
Q psy3968 1069 KV-RILLSPV 1077 (1080)
Q Consensus 1069 kd-~~~~~p~ 1077 (1080)
+| .|+++|.
T Consensus 158 ~DT~G~~~P~ 167 (266)
T cd07944 158 VDSFGSMYPE 167 (266)
T ss_pred ecCCCCCCHH
Confidence 99 9999995
No 165
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=99.17 E-value=1.3e-09 Score=117.75 Aligned_cols=234 Identities=19% Similarity=0.230 Sum_probs=158.7
Q ss_pred ccceEEEccCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHH
Q psy3968 7 KADESYLVGKGLPPVEAYLNI--PEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAAR 84 (1080)
Q Consensus 7 ~ADea~~v~~~~~~~~~yld~--e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r 84 (1080)
.||+.+.+ ++|.|+ +.+.+-.++. ++|+.-.|.+......-....+.-+|.+|+ ...++...|...-+
T Consensus 60 ~a~e~i~v-------~~f~dil~~~iqe~L~~~--n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGn-R~lLrwE~~~~~~~ 129 (361)
T COG1759 60 VADEVIIV-------DKFSDILNEEIQEELREL--NAIFIPHGSFVAYVGYDGIENEFEVPMFGN-RELLRWEEDRKLEY 129 (361)
T ss_pred hhheEEEe-------chhHHHhhHHHHHHHHHc--CeEEecCCceEEEecchhhhhcccCccccc-HhHhhhhcchhhHH
Confidence 35666666 356554 2344444433 455555554444544443455578999986 67888888999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHh-cCCCcEEE
Q psy3968 85 QAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAA-FGNGAMFI 163 (1080)
Q Consensus 85 ~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~-~g~~~vlV 163 (1080)
.+|+++||+.|+- ..+++|+ .-|+|||....-||+|-+++.|.+|+.+..+++....--. -+-.++.|
T Consensus 130 ~lLekAgi~~P~~----~~~PeeI-------dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~I 198 (361)
T COG1759 130 KLLEKAGLRIPKK----YKSPEEI-------DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARI 198 (361)
T ss_pred HHHHHcCCCCCcc----cCChHHc-------CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhcee
Confidence 9999999999975 6788775 4599999999999999999999999999988877521100 00136899
Q ss_pred eeccCCCcEEEEEEEEec-CC--cEEEEEee-eccccc------ccc-------E--EEEEcCCCCCCHHHHHHHHHHHH
Q psy3968 164 EKFIERPRHIEVQLLGDK-AG--NVVHLYER-DCSVQR------RHQ-------K--VVEIAPAPHLDINVRNKMTDLAV 224 (1080)
Q Consensus 164 EeyI~G~~ei~v~vl~d~-~G--~vv~l~~r-~~~~~~------~~~-------~--~~~~~Pa~~l~~~~~~~l~~~a~ 224 (1080)
||||-| ..+....+... .+ ..+.+-.| +.+... ..| . .....|. .+.+.+..++.+++.
T Consensus 199 eEYv~G-~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~ptyvv~Gn~p~-vlRESLL~~vfe~ge 276 (361)
T COG1759 199 EEYVVG-APFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNLEPTYVVVGNIPV-VLRESLLPKVFEMGE 276 (361)
T ss_pred eEEeec-cceeeeeeeccccCceeEeeeeheeeccchhhccCCHHHHhhcCCCceEEEECCcch-hhHHHHHHHHHHHHH
Confidence 999999 56666665432 11 22222111 001100 001 1 1112344 366778888888888
Q ss_pred HHHHHc------CCcceEEEEEEEcCCCCEEEEEEeccCCCCccc
Q psy3968 225 KLAKHV------GYSNAGTVEFLCDESGQFYFIEVNARLQVEHTV 263 (1080)
Q Consensus 225 ~i~~al------g~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~ 263 (1080)
+++++. |+-|++++|.+++++=++++.|+.+|+.|+..+
T Consensus 277 r~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTNv 321 (361)
T COG1759 277 RFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTNV 321 (361)
T ss_pred HHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEeccccCCccc
Confidence 877665 788999999999998889999999999986554
No 166
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.16 E-value=1.1e-10 Score=101.00 Aligned_cols=65 Identities=49% Similarity=0.654 Sum_probs=62.3
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
.|+||++|.|.+|+|++||.|++||+|+.+|+||+..+|+||.+|+|.++.+. +.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 37899999999999999999999999999999999999999999999999998 999999999875
No 167
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=99.14 E-value=6.1e-11 Score=113.18 Aligned_cols=73 Identities=53% Similarity=0.884 Sum_probs=66.3
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVV 74 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai 74 (1080)
.|+|.++||+.|.+++ .++..+|+|++.|+++++++++|++||||||++|++.|++.|++.|+.|+||+++++
T Consensus 38 ~s~~~~~ad~~~~~~~-~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~fiGp~~~~i 110 (110)
T PF00289_consen 38 VSTHVDMADEAYFEPP-GPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACEDAGIIFIGPSPEAI 110 (110)
T ss_dssp TGHHHHHSSEEEEEES-SSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred ccccccccccceecCc-chhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence 4789999999999974 367799999999999999999999999999999999999999999999999999875
No 168
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.06 E-value=3.3e-10 Score=131.93 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=76.7
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc---------------
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD--------------- 984 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~--------------- 984 (1080)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++ +.|..|++|++|+..+
T Consensus 14 eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~ 93 (403)
T TIGR01347 14 EGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDATAAPPAKSGEEKE 93 (403)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCCcccccccccCCCC
Confidence 39999999999999999999999999999999999999999999999 9999999999995210
Q ss_pred ----------------h--hHHHHHHHHHHcCCChhhhcccc
Q psy3968 985 ----------------N--VVYKFCDLSVQVGMDVFRVFDSL 1008 (1080)
Q Consensus 985 ----------------~--~~~~~~~~a~~~gid~~~v~~~l 1008 (1080)
. .-+.+|++|+++|||+.+|--+=
T Consensus 94 ~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG 135 (403)
T TIGR01347 94 ETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTG 135 (403)
T ss_pred CCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCC
Confidence 0 13578899999999999985443
No 169
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=99.03 E-value=3.3e-10 Score=126.09 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=63.7
Q ss_pred HHHHHHcC----CChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHH
Q psy3968 991 CDLSVQVG----MDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQ 1052 (1080)
Q Consensus 991 ~~~a~~~g----id~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1080)
.+.|.+.| +|..++|+++||+ +++..+++.+|+.|.++. |+. |..+.|+.+||.
T Consensus 75 v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~----~~~----~~~~~~~~~~~~ 146 (268)
T cd07940 75 IDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE----FSA----EDATRTDLDFLI 146 (268)
T ss_pred HHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE----Eee----ecCCCCCHHHHH
Confidence 34566667 9999999999887 445567778888897655 332 122469999999
Q ss_pred HHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1053 NLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1053 ~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++++.++|++.|||+| .|+++|.
T Consensus 147 ~~~~~~~~~G~~~i~l~DT~G~~~P~ 172 (268)
T cd07940 147 EVVEAAIEAGATTINIPDTVGYLTPE 172 (268)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHH
Confidence 999999999999999999 9999995
No 170
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.00 E-value=6.2e-10 Score=129.94 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=58.7
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ +.|..|++|++|+
T Consensus 105 eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 105 DGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred eEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 59999999999999999999999999999999999999999999999 9999999999995
No 171
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=98.97 E-value=1.7e-09 Score=95.70 Aligned_cols=59 Identities=36% Similarity=0.463 Sum_probs=56.5
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
+|++.+|+|++||.|++||+++.+|+|||..+|+||.+|+|.++.++ +.+..|++|++|
T Consensus 13 ~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 58999999999999999999999999999999999999999999999 899999999875
No 172
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=98.97 E-value=9.1e-10 Score=128.47 Aligned_cols=85 Identities=28% Similarity=0.337 Sum_probs=75.5
Q ss_pred CC-eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc------------h
Q psy3968 921 MP-GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD------------N 985 (1080)
Q Consensus 921 m~-G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~------------~ 985 (1080)
|. |+|++|+|++||.|++||+|++||++|..+||+||.+|+|.+|+++ +.|..|++|++|.-.+ +
T Consensus 14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~~~a~~~~~~~~ 93 (404)
T COG0508 14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEGADAPAAAEAPPEP 93 (404)
T ss_pred cceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCCCcccccCcccCCc
Confidence 63 9999999999999999999999999999999999999999999999 9999999999996321 0
Q ss_pred ---------------------hHHHHHHHHHHcCCChhhhc
Q psy3968 986 ---------------------VVYKFCDLSVQVGMDVFRVF 1005 (1080)
Q Consensus 986 ---------------------~~~~~~~~a~~~gid~~~v~ 1005 (1080)
..+.+|++|+++|||+..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~ 134 (404)
T COG0508 94 AAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVK 134 (404)
T ss_pred cccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcC
Confidence 11377889999999999755
No 173
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=98.95 E-value=1.6e-09 Score=120.54 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=74.8
Q ss_pred HHHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHH
Q psy3968 990 FCDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLA 1055 (1080)
Q Consensus 990 ~~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1080)
-.+.|.+.|+|..++|.+.||. ++++.+++.+|+.|++++++|||+.+. |....++.+||++++
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~--~~~~~~~~~~~~~~~ 155 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC--PYEGEVPPERVAEVA 155 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC--CCCCCCCHHHHHHHH
Confidence 3567889999999999999994 455666999999999999999999853 333457999999999
Q ss_pred HHHHHcCCcEEEEec-CCccCCC
Q psy3968 1056 DELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1056 ~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+++.++|+|.|+|+| .|+++|.
T Consensus 156 ~~~~~~Ga~~i~l~DT~G~~~P~ 178 (274)
T cd07938 156 ERLLDLGCDEISLGDTIGVATPA 178 (274)
T ss_pred HHHHHcCCCEEEECCCCCccCHH
Confidence 999999999999999 9999995
No 174
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=98.94 E-value=1.5e-09 Score=125.99 Aligned_cols=60 Identities=25% Similarity=0.412 Sum_probs=58.5
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ +.|..|++|++|+
T Consensus 58 eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 58 EGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred eEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 59999999999999999999999999999999999999999999999 9999999999995
No 175
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.92 E-value=2.7e-09 Score=125.18 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=75.1
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc----------------
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD---------------- 984 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~---------------- 984 (1080)
|+|++|+|++||.|++||+|+++|+|||++++.||.+|+|.+++++ +.|..|++|++|...+
T Consensus 13 g~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~ 92 (416)
T PLN02528 13 CELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHLRSDSLLLPTDSS 92 (416)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccccccCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998 9999999999984100
Q ss_pred ----------------h--hHHHHHHHHHHcCCChhhhccc
Q psy3968 985 ----------------N--VVYKFCDLSVQVGMDVFRVFDS 1007 (1080)
Q Consensus 985 ----------------~--~~~~~~~~a~~~gid~~~v~~~ 1007 (1080)
. .-+.+|++|+++|||+..|--.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gt 133 (416)
T PLN02528 93 NIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGT 133 (416)
T ss_pred cCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCC
Confidence 0 1267899999999999887543
No 176
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.90 E-value=2.2e-09 Score=124.72 Aligned_cols=62 Identities=27% Similarity=0.307 Sum_probs=59.5
Q ss_pred CCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 921 MPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 921 m~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
..|+|++|+|++||.|++||+|+++|+|||+++|+||.+|+|.++.++ +.|..|++|+.+..
T Consensus 15 ~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 15 TEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred ceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 359999999999999999999999999999999999999999999999 99999999999964
No 177
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.89 E-value=2.4e-09 Score=132.21 Aligned_cols=62 Identities=32% Similarity=0.375 Sum_probs=59.3
Q ss_pred CCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 920 Pm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
...|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+|+++ +.|..|++|++|.
T Consensus 216 ~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 216 GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3469999999999999999999999999999999999999999999999 9999999999984
No 178
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=98.87 E-value=2e-09 Score=119.62 Aligned_cols=84 Identities=31% Similarity=0.326 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCChhhhccccC--------------CccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHH
Q psy3968 988 YKFCDLSVQVGMDVFRVFDSLN--------------YLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQN 1053 (1080)
Q Consensus 988 ~~~~~~a~~~gid~~~v~~~ln--------------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1080)
.+..+++.+.|++..++++..+ +++++..+++.+|+.|..++..++++.. +.||.+|+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------~~~~~~~l~~ 150 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG------CKTDPEYVLE 150 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC------CCCCHHHHHH
Confidence 4556789999999999999999 6899999999999999999999988763 3699999999
Q ss_pred HHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1054 LADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1054 ~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+++++.++|++.|+|+| .|.++|.
T Consensus 151 ~~~~~~~~g~~~i~l~Dt~G~~~P~ 175 (265)
T cd03174 151 VAKALEEAGADEISLKDTVGLATPE 175 (265)
T ss_pred HHHHHHHcCCCEEEechhcCCcCHH
Confidence 99999999999999999 9999985
No 179
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.85 E-value=8.9e-08 Score=106.10 Aligned_cols=184 Identities=22% Similarity=0.344 Sum_probs=120.8
Q ss_pred HHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCC-CC--CCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEEC
Q psy3968 60 LDAGIRFIGPSPYVVQQMGDKVAARQAAIDSG-VP--IVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVR 136 (1080)
Q Consensus 60 ~~~gi~~iGps~eai~~~~DK~~~r~~l~~~G-Ip--vp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~ 136 (1080)
...|++|+.+ ...||+.+.+.|.+.. +. .|++ ..+.+.+++.++++..+ -++|||..|+.|+||.++.
T Consensus 5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T--~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri~ 75 (262)
T PF14398_consen 5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPET--ELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRIE 75 (262)
T ss_pred hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCc--eEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEEE
Confidence 4578999865 3589999999999864 33 4555 56788899999998876 6999999999999987663
Q ss_pred ----------------------CHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC----cEEEEEEEE--ecCCc--EE
Q psy3968 137 ----------------------KMEDVEENFQRASSEAKAAFGNGAMFIEKFIERP----RHIEVQLLG--DKAGN--VV 186 (1080)
Q Consensus 137 ----------------------s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~----~ei~v~vl~--d~~G~--vv 186 (1080)
+.+++...+... .+...+|||+.|+=. +.+.+-++. ++.|. +.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vt 148 (262)
T PF14398_consen 76 KKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKEL-------LGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVT 148 (262)
T ss_pred EeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHh-------cCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEE
Confidence 334454444432 346789999999742 555555554 44554 33
Q ss_pred EEEeeecc---ccccccEEEEEcCC-CCC-----CHHHHHHHHHHHHHHHHHc----CC-cceEEEEEEEcCCCCEEEEE
Q psy3968 187 HLYERDCS---VQRRHQKVVEIAPA-PHL-----DINVRNKMTDLAVKLAKHV----GY-SNAGTVEFLCDESGQFYFIE 252 (1080)
Q Consensus 187 ~l~~r~~~---~~~~~~~~~~~~Pa-~~l-----~~~~~~~l~~~a~~i~~al----g~-~G~~~vEfivd~dG~~~~iE 252 (1080)
.+..|-.. +..+....+...+. ..+ .....++|.+.+..+++.+ +. -|-..+|+-+|.+|++|+||
T Consensus 149 g~~~Rva~~~~ivTN~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiDl~iD~~g~iWliE 228 (262)
T PF14398_consen 149 GIVARVAKPGSIVTNLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGIDLGIDKNGKIWLIE 228 (262)
T ss_pred EEEEEEcCCCCceeccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEEEEcCCCCEEEEE
Confidence 33333211 11111111111111 001 2335566777777766655 55 46778999999999999999
Q ss_pred EeccCCC
Q psy3968 253 VNARLQV 259 (1080)
Q Consensus 253 vNpR~~g 259 (1080)
+|++++-
T Consensus 229 vN~kP~~ 235 (262)
T PF14398_consen 229 VNSKPGK 235 (262)
T ss_pred EeCCCCc
Confidence 9999875
No 180
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.84 E-value=5.4e-09 Score=126.81 Aligned_cols=60 Identities=33% Similarity=0.428 Sum_probs=57.9
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.+++++ +.|..|++|++|.
T Consensus 129 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 129 KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 38999999999999999999999999999999999999999999999 9999999999983
No 181
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=98.82 E-value=4e-09 Score=116.89 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=67.4
Q ss_pred HHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.+.|.+.|+|..++|.+.+|. +++..+++.+|+.|.++.. +++.. ..|+.+|++++++
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~--~~~~~------~~~~~~~~~~~~~ 146 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSV--GAEDA------SRADPDFLIEFAE 146 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE--eeccC------CCCCHHHHHHHHH
Confidence 356888999999999988886 6788999999999987653 33321 3699999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++|++.|+|+| .|.++|.
T Consensus 147 ~~~~~G~~~i~l~DT~G~~~P~ 168 (259)
T cd07939 147 VAQEAGADRLRFADTVGILDPF 168 (259)
T ss_pred HHHHCCCCEEEeCCCCCCCCHH
Confidence 99999999999999 9999995
No 182
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=98.82 E-value=7.1e-09 Score=125.04 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=65.6
Q ss_pred HHHHHcCCChhhhc---------cccC-----CccChHHHHHHHHhcCCeEEE-EEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 992 DLSVQVGMDVFRVF---------DSLN-----YLPNLILGMEAAGKAGGVVEA-AISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 992 ~~a~~~gid~~~v~---------~~ln-----~~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
+.+.+.|++..++| +.|| .+++++.+++.+|+.|.+++. +.+|+.. ..++.+|++++++
T Consensus 92 e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da------~r~d~~~l~~~~~ 165 (524)
T PRK12344 92 QALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG------YKANPEYALATLK 165 (524)
T ss_pred HHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc------ccCCHHHHHHHHH
Confidence 45667788888887 5666 678999999999999998875 3344321 2589999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++||+.|+|+| .|+++|.
T Consensus 166 ~~~~~Gad~i~l~DTvG~~~P~ 187 (524)
T PRK12344 166 AAAEAGADWVVLCDTNGGTLPH 187 (524)
T ss_pred HHHhCCCCeEEEccCCCCcCHH
Confidence 99999999999999 9999995
No 183
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=98.82 E-value=4.4e-09 Score=122.07 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=68.0
Q ss_pred HHHHHHcCCChhhhccccCC--------------ccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNY--------------LPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~--------------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.+.|.+.|++..++|.+.+| ++++..+++.+|+.|..++. ++.. ...++.+|++++++
T Consensus 78 i~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~--~~ed------~~r~~~~~l~~~~~ 149 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSV--GGED------ASRADPDFLVELAE 149 (365)
T ss_pred HHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEE--eecC------CCCCCHHHHHHHHH
Confidence 45688889999999999987 68888999999999987653 3332 14699999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++|+|.|||+| .|.++|.
T Consensus 150 ~~~~~Ga~~i~l~DT~G~~~P~ 171 (365)
T TIGR02660 150 VAAEAGADRFRFADTVGILDPF 171 (365)
T ss_pred HHHHcCcCEEEEcccCCCCCHH
Confidence 99999999999999 9999995
No 184
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.82 E-value=2.3e-07 Score=103.98 Aligned_cols=186 Identities=21% Similarity=0.241 Sum_probs=119.7
Q ss_pred CcHHHHHHhcCHHHHHHHHHHCCCCCCCCCC---------CCCCCHHHHHHHHHHh-CCcEEEEeCCCCCCcCeEEECCH
Q psy3968 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTP---------GPITTTEEAMEFCLKY-GLPVIFKAAYGGGGRGMRVVRKM 138 (1080)
Q Consensus 69 ps~eai~~~~DK~~~r~~l~~~GIpvp~~~~---------~~v~s~ee~~~~~~~i-gfPvVVKP~~g~Gg~GV~iv~s~ 138 (1080)
++.+...++.||..+++++.++|||+|+... ....+.+++.++++.. ..++|+||..|++|+|+.+++..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 6788899999999999999999999998310 0135678888888775 67999999999999999998766
Q ss_pred hH--HHHHHHHHHHHHHHhcCCCcEEEeeccCCC-----------cEEEEEEEEecCCcEE--EEEeee---cc------
Q psy3968 139 ED--VEENFQRASSEAKAAFGNGAMFIEKFIERP-----------RHIEVQLLGDKAGNVV--HLYERD---CS------ 194 (1080)
Q Consensus 139 ee--L~~a~~~~~~~a~~~~g~~~vlVEeyI~G~-----------~ei~v~vl~d~~G~vv--~l~~r~---~~------ 194 (1080)
+. +............. .+...++||++|.-. .-+.+..+.+. +.+. ...-|- ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~~~~a~lRlg~~~~~~DN~~ 173 (285)
T PF14397_consen 96 DGSEINRDISALYAGLES-LGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVEVLMAMLRLGRGGSGVDNFH 173 (285)
T ss_pred cCcccccchhHHHHHHHh-cCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeEEEEEEEEeCCCCCcccccC
Confidence 52 11111111111111 112289999999764 23334444443 3321 111110 00
Q ss_pred -------------cc-----ccccEEEEEcCCCC-----CCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEE
Q psy3968 195 -------------VQ-----RRHQKVVEIAPAPH-----LDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFI 251 (1080)
Q Consensus 195 -------------~~-----~~~~~~~~~~Pa~~-----l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~i 251 (1080)
+. .......+.-|-.. +.-...+++.+.+.++.+.+-..+....|+.+|++| |++|
T Consensus 174 ~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDvait~~G-p~ll 252 (285)
T PF14397_consen 174 QGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVAITEDG-PVLL 252 (285)
T ss_pred CCCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCC-cEEE
Confidence 00 00111122223211 122346789999999999888778888999999999 9999
Q ss_pred EEeccC
Q psy3968 252 EVNARL 257 (1080)
Q Consensus 252 EvNpR~ 257 (1080)
|.|.|.
T Consensus 253 E~N~~~ 258 (285)
T PF14397_consen 253 EGNARW 258 (285)
T ss_pred EeeCCC
Confidence 999994
No 185
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=98.79 E-value=6.1e-09 Score=120.66 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHH
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNL 1054 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1080)
.-.+.|.+.|++..++|.+.||+ +++..+++.+|+.|..++. ++... ..++.+|++++
T Consensus 75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~--~~eda------~r~~~~~l~~~ 146 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEF--SAEDA------TRTDIDFLIKV 146 (363)
T ss_pred HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE--EEeec------CCCCHHHHHHH
Confidence 33567889999999999999887 5566788889999987754 44321 36899999999
Q ss_pred HHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1055 ADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1055 ~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++.++|+|.|||+| .|.++|.
T Consensus 147 ~~~~~~~g~~~i~l~DT~G~~~P~ 170 (363)
T TIGR02090 147 FKRAEEAGADRINIADTVGVLTPQ 170 (363)
T ss_pred HHHHHhCCCCEEEEeCCCCccCHH
Confidence 9999999999999999 9999995
No 186
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=98.79 E-value=2.5e-07 Score=108.60 Aligned_cols=175 Identities=22% Similarity=0.309 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEeC--CCC-C-CcCeEEECCHhHHHHHHHHHHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYG-LPVIFKAA--YGG-G-GRGMRVVRKMEDVEENFQRASSEAK 153 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ig-fPvVVKP~--~g~-G-g~GV~iv~s~eeL~~a~~~~~~~a~ 153 (1080)
+.+.+|++|+++|||+|++ ..+++.+++.++++++| ||+|+||. .|+ | +-||++++|.+++.++++++.....
T Consensus 4 ~E~~aK~ll~~~GIpvp~~--~~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~ 81 (386)
T TIGR01016 4 HEYQAKQIFAKYGIPVPRG--YVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL 81 (386)
T ss_pred cHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence 4578899999999999998 46889999999999999 99999998 222 2 2389999999999999988764211
Q ss_pred Hh--c---CC--CcEEEeeccCCCcEEEEEEEEecC--CcEEEEEeeecc----c---cccccEEEEEcCCC--------
Q psy3968 154 AA--F---GN--GAMFIEKFIERPRHIEVQLLGDKA--GNVVHLYERDCS----V---QRRHQKVVEIAPAP-------- 209 (1080)
Q Consensus 154 ~~--~---g~--~~vlVEeyI~G~~ei~v~vl~d~~--G~vv~l~~r~~~----~---~~~~~~~~~~~Pa~-------- 209 (1080)
.. . |. ..++||+|+++.+|+.+.++.|.. |.++.++...-. + .......+.+.|..
T Consensus 82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~~~~~~~a~ 161 (386)
T TIGR01016 82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAR 161 (386)
T ss_pred eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCCcCCCHHHHH
Confidence 00 0 11 369999999955999999999864 334433211000 0 00111123333321
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCcceEEEE---EEEcCCCCEEEEEEec
Q psy3968 210 ------HLDINVRNKMTDLAVKLAKHVGYSNAGTVE---FLCDESGQFYFIEVNA 255 (1080)
Q Consensus 210 ------~l~~~~~~~l~~~a~~i~~alg~~G~~~vE---fivd~dG~~~~iEvNp 255 (1080)
.++....+++.+.+.++.+.+.-.....+| ++++++|+++.+...-
T Consensus 162 ~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki 216 (386)
T TIGR01016 162 EIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKL 216 (386)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeE
Confidence 234556667777777777766543444455 4555566544444333
No 187
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=98.78 E-value=1.9e-07 Score=109.72 Aligned_cols=109 Identities=24% Similarity=0.308 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEeCCCCCCc----CeEEECCHhHHHHHHHHHHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY-GLPVIFKAAYGGGGR----GMRVVRKMEDVEENFQRASSEAK 153 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i-gfPvVVKP~~g~Gg~----GV~iv~s~eeL~~a~~~~~~~a~ 153 (1080)
+++.+|++|+++|||+|++ ..+++.+++.++++++ +||+|+||....+|+ ||+++++.+++.++++++.....
T Consensus 4 ~e~~ak~lL~~~gIpvp~~--~~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~ 81 (388)
T PRK00696 4 HEYQAKELFAKYGVPVPRG--IVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTL 81 (388)
T ss_pred CHHHHHHHHHHcCCCCCCC--eeeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccce
Confidence 5788999999999999998 5789999999999999 999999998655555 99999999999999988875311
Q ss_pred --Hh---cCC--CcEEEeeccCCCcEEEEEEEEecC-CcEEEEE
Q psy3968 154 --AA---FGN--GAMFIEKFIERPRHIEVQLLGDKA-GNVVHLY 189 (1080)
Q Consensus 154 --~~---~g~--~~vlVEeyI~G~~ei~v~vl~d~~-G~vv~l~ 189 (1080)
.. .+. ..++||+++++..|+.+.+..|.. |.++.++
T Consensus 82 ~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~ 125 (388)
T PRK00696 82 VTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA 125 (388)
T ss_pred eeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence 00 111 259999999966999999999864 5555443
No 188
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=98.78 E-value=1.1e-08 Score=119.21 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHH
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNL 1054 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1080)
+-.+.|.+.|++..++|.+.||+ +++..+++.+++.|..++.+..+. ..++.+|++++
T Consensus 79 ~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~--------~r~~~~~l~~~ 150 (378)
T PRK11858 79 SDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDA--------SRTDLDFLIEF 150 (378)
T ss_pred HHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccC--------CCCCHHHHHHH
Confidence 33557888999999999999996 899999999999998876654332 36899999999
Q ss_pred HHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1055 ADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1055 ~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.+.++|++.|+|+| .|.++|.
T Consensus 151 ~~~~~~~Ga~~I~l~DT~G~~~P~ 174 (378)
T PRK11858 151 AKAAEEAGADRVRFCDTVGILDPF 174 (378)
T ss_pred HHHHHhCCCCEEEEeccCCCCCHH
Confidence 9999999999999999 9999995
No 189
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.73 E-value=2.2e-08 Score=122.09 Aligned_cols=59 Identities=32% Similarity=0.407 Sum_probs=57.5
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
|+|++|+|++||.|++||+|+++|+|||.++|+||.+|+|.+++++ +.|..|++|+++.
T Consensus 133 g~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 133 VEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred eEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999 9999999999983
No 190
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=98.67 E-value=5.8e-08 Score=108.36 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=65.3
Q ss_pred HHHHHHHcCCChhhhccc---------cC-----CccChHHHHHHHHhcCCeEEEE-EEEecCCCCCCCCCCCHHHHHHH
Q psy3968 990 FCDLSVQVGMDVFRVFDS---------LN-----YLPNLILGMEAAGKAGGVVEAA-ISYTGDVSDPSKKKYDLKYYQNL 1054 (1080)
Q Consensus 990 ~~~~a~~~gid~~~v~~~---------ln-----~~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1080)
..+.+.+.|++..++|.+ +| .+++++.+++.+|+.|..++.+ .+|. | ...++.+|++++
T Consensus 83 ~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~----d--~~~~~~~~~~~~ 156 (273)
T cd07941 83 NLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFF----D--GYKANPEYALAT 156 (273)
T ss_pred HHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecc----c--cCCCCHHHHHHH
Confidence 345677888888888754 32 4567889999999999987764 2331 1 136899999999
Q ss_pred HHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1055 ADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1055 ~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++.++|++.|||+| .|.++|.
T Consensus 157 ~~~~~~~g~~~i~l~DT~G~~~P~ 180 (273)
T cd07941 157 LKAAAEAGADWLVLCDTNGGTLPH 180 (273)
T ss_pred HHHHHhCCCCEEEEecCCCCCCHH
Confidence 9999999999999999 9999995
No 191
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.63 E-value=7.6e-08 Score=113.74 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=74.4
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc---------------
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD--------------- 984 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~--------------- 984 (1080)
.|+|++|+|++||.|++||+|+.+|+||+.++|.||.+|+|.++.++ +.|..|++|++|...+
T Consensus 16 ~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~ 95 (411)
T PRK11856 16 EGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAP 95 (411)
T ss_pred eEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCCCCccccccCCCCCCC
Confidence 59999999999999999999999999999999999999999999999 9999999999984100
Q ss_pred ---------h---------------------hHHHHHHHHHHcCCChhhhc
Q psy3968 985 ---------N---------------------VVYKFCDLSVQVGMDVFRVF 1005 (1080)
Q Consensus 985 ---------~---------------------~~~~~~~~a~~~gid~~~v~ 1005 (1080)
+ .-+.+|++|+++|||+.+|-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~ 146 (411)
T PRK11856 96 APEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVK 146 (411)
T ss_pred CCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCc
Confidence 0 02577899999999998884
No 192
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=98.60 E-value=7.2e-08 Score=119.31 Aligned_cols=62 Identities=34% Similarity=0.379 Sum_probs=59.8
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
.|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.+++++ +.|..|++|++|+..
T Consensus 14 eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 14 EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 49999999999999999999999999999999999999999999999 999999999999754
No 193
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.56 E-value=1.5e-07 Score=111.19 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=57.2
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--ee-eecCceeEEe
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--ML-LRGANAVGYT 980 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~-v~~g~~l~~~ 980 (1080)
.|+|++|+|++||.|++||+|+++|+||+.++|.||.+|+|.+++++ +. |..|++|++|
T Consensus 13 eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i 74 (435)
T TIGR01349 13 TGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVL 74 (435)
T ss_pred eEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEE
Confidence 39999999999999999999999999999999999999999999999 67 9999999998
No 194
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.49 E-value=2.6e-07 Score=112.31 Aligned_cols=65 Identities=32% Similarity=0.464 Sum_probs=61.5
Q ss_pred cCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 918 GAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 918 ~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
.++..|+|++|+|++||.|++||+|++||+|||+++|.|+.+|+|.++++. +.|..|++|++|+.
T Consensus 9 g~~~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~ 75 (546)
T TIGR01348 9 GDNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEV 75 (546)
T ss_pred CCCCceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEec
Confidence 344789999999999999999999999999999999999999999999999 99999999999964
No 195
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.48 E-value=2.9e-07 Score=110.06 Aligned_cols=58 Identities=21% Similarity=0.282 Sum_probs=56.2
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--e-eeecCceeEEe
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--M-LLRGANAVGYT 980 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~-~v~~g~~l~~~ 980 (1080)
|+|++|+|++||.|++||+|+.+|++|..++|.||.+|+|.+|+++ + .|..|++|+++
T Consensus 127 g~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 127 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999 4 69999999987
No 196
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.48 E-value=2.2e-07 Score=113.84 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=58.8
Q ss_pred CCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 921 MPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 921 m~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
..|+|++|+|++||.|++||+|+++|+|||.++|.||.+|+|.+|+++ +.|..|++|++|.
T Consensus 148 ~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 148 TEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred ceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 359999999999999999999999999999999999999999999999 9999999999994
No 197
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=98.43 E-value=4.9e-07 Score=103.08 Aligned_cols=84 Identities=18% Similarity=0.042 Sum_probs=64.8
Q ss_pred HHHHHcCCChhhhccccCC--------------ccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHH
Q psy3968 992 DLSVQVGMDVFRVFDSLNY--------------LPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADE 1057 (1080)
Q Consensus 992 ~~a~~~gid~~~v~~~ln~--------------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1080)
+.|.+.|+|...+|-+-.| ++.++.+++.+|+.|..++++|||+.+..+. ...+.+|+++++++
T Consensus 128 e~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~--~r~~~~~l~~~~~~ 205 (347)
T PLN02746 128 EAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIE--GPVPPSKVAYVAKE 205 (347)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCcc--CCCCHHHHHHHHHH
Confidence 3455666666555532222 2345678889999999999999998753332 34789999999999
Q ss_pred HHHcCCcEEEEec-CCccCCC
Q psy3968 1058 LVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1058 ~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++|+|.|||+| .|+++|.
T Consensus 206 ~~~~Gad~I~l~DT~G~a~P~ 226 (347)
T PLN02746 206 LYDMGCYEISLGDTIGVGTPG 226 (347)
T ss_pred HHHcCCCEEEecCCcCCcCHH
Confidence 9999999999999 9999995
No 198
>PRK09389 (R)-citramalate synthase; Provisional
Probab=98.27 E-value=1.2e-06 Score=105.16 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=63.9
Q ss_pred HHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
++.|.+.|++...+|.+.+|+ +....+++++|+.|..++.... + ...++.+|++++++
T Consensus 79 i~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e---d-----~~r~~~~~l~~~~~ 150 (488)
T PRK09389 79 IDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE---D-----ASRADLDFLKELYK 150 (488)
T ss_pred HHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe---e-----CCCCCHHHHHHHHH
Confidence 446777888888888888888 4455666778888987775443 1 13689999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.+.++|+|.|+|.| .|.++|.
T Consensus 151 ~~~~~Ga~~i~l~DTvG~~~P~ 172 (488)
T PRK09389 151 AGIEAGADRICFCDTVGILTPE 172 (488)
T ss_pred HHHhCCCCEEEEecCCCCcCHH
Confidence 99999999999999 9999995
No 199
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.26 E-value=6.1e-06 Score=88.85 Aligned_cols=173 Identities=20% Similarity=0.276 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCC-----CcCeEE-ECCHhHHHHHHHHHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGG-----GRGMRV-VRKMEDVEENFQRASSEA 152 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~G-----g~GV~i-v~s~eeL~~a~~~~~~~a 152 (1080)
+-...+++|+.+|||+|++ ..+++.+++.++++++|||+++|-....- --||++ ++|++++.++++++....
T Consensus 11 ~e~e~~~lL~~yGI~~~~~--~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~ 88 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPT--RLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERV 88 (222)
T ss_dssp -HHHHHHHHHTTT--------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCe--eEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHH
Confidence 5567899999999999999 56999999999999999999999987541 237777 899999999999998876
Q ss_pred HHhcCC---CcEEEeeccC-CCcEEEEEEEEec-CCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHH
Q psy3968 153 KAAFGN---GAMFIEKFIE-RPRHIEVQLLGDK-AGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLA 227 (1080)
Q Consensus 153 ~~~~g~---~~vlVEeyI~-G~~ei~v~vl~d~-~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~ 227 (1080)
.....+ ..++||+.++ +..|+.+.+..|. .|.++.++.-.....-.........| ++....+++.+..+-.-
T Consensus 89 ~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~GG~~vE~~~D~~~~l~P---l~~~~a~~mi~~l~~~~ 165 (222)
T PF13549_consen 89 AAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGLGGIFVELLKDVAFRLPP---LSEADAREMIRELRAYP 165 (222)
T ss_dssp HHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE-STTHHHH---EEEESS-----HHHHHHHHHTSTTHH
T ss_pred HHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcCCCceeeeecceEEeeCC---CCHHHHHHHHHHHHhHH
Confidence 543332 5799999999 4499999999885 45666554322111111112222333 55555444444333222
Q ss_pred HHcCCcceEEEE-------------EEEcCCCCEEEEEEeccC
Q psy3968 228 KHVGYSNAGTVE-------------FLCDESGQFYFIEVNARL 257 (1080)
Q Consensus 228 ~alg~~G~~~vE-------------fivd~dG~~~~iEvNpR~ 257 (1080)
-.-|++|.-..| +..+ ..++.=+|+||=+
T Consensus 166 lL~G~RG~p~~d~~al~~~l~~ls~l~~~-~p~I~eldiNPl~ 207 (222)
T PF13549_consen 166 LLRGYRGRPPADLDALADLLVRLSQLAAD-LPEIAELDINPLI 207 (222)
T ss_dssp HHH-------B-HHHHHHHHHHHHHHHHH-TTTEEEEEEEEEE
T ss_pred hhcccCCCCCcCHHHHHHHHHHHHHHHHh-CCCEEEEEeeceE
Confidence 222566642222 1222 3457788888854
No 200
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.24 E-value=4.1e-06 Score=72.61 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=58.1
Q ss_pred CCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 919 aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
++-.|.+.+|+++.|+.|.+|++++.+|+|||...+.+|.+|+|.+..+. +.+..|++|+++
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 45679999999999999999999999999999999999999999988888 999999999875
No 201
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.22 E-value=2.3e-06 Score=104.65 Aligned_cols=60 Identities=30% Similarity=0.370 Sum_probs=58.3
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.|+|++|+|++||.|++||+|+++|+|||+++|.||.+|+|.++.+. +.|..|++|++|.
T Consensus 15 ~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 49999999999999999999999999999999999999999999999 9999999999996
No 202
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=98.21 E-value=3.1e-06 Score=92.60 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=74.7
Q ss_pred CCchhHHHHHHHHHHcCCChhhhccccCC--------------ccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCC
Q psy3968 982 YPDNVVYKFCDLSVQVGMDVFRVFDSLNY--------------LPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYD 1047 (1080)
Q Consensus 982 ~~~~~~~~~~~~a~~~gid~~~v~~~ln~--------------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1080)
.....++.+.+.+.+.|+|..++|+++|| +++++.+++.+|+.|..+ ++|++.. ..|+
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~------~~~~ 135 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDA------SRTD 135 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTT------GGSS
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCcccc------cccc
Confidence 34445778778888999999999999999 999999999999999998 5665542 4699
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1048 LKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1048 ~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.+||.++++++.++|+|.|||+| .|.++|.
T Consensus 136 ~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~ 166 (237)
T PF00682_consen 136 PEELLELAEALAEAGADIIYLADTVGIMTPE 166 (237)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEETTS-S-HH
T ss_pred HHHHHHHHHHHHHcCCeEEEeeCccCCcCHH
Confidence 99999999999999999999999 9999985
No 203
>KOG0558|consensus
Probab=98.20 E-value=9.3e-07 Score=96.08 Aligned_cols=95 Identities=22% Similarity=0.128 Sum_probs=79.7
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc----------------
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD---------------- 984 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~---------------- 984 (1080)
-+|.+|+||+||+|++=|.||.+.+.|...+|.+-++|+|++|+-+ +-...|.+|+.++-.+
T Consensus 79 v~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~~ds~e~s~es~~vs~ 158 (474)
T KOG0558|consen 79 VTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDSQDSPEDSDESPAVSL 158 (474)
T ss_pred eeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccCcCCcccCCccccccC
Confidence 3789999999999999999999999999999999999999999999 8889999999884100
Q ss_pred -------------hhHHHHHHHHHHcCCChhhhccccCCccChHHH
Q psy3968 985 -------------NVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILG 1017 (1080)
Q Consensus 985 -------------~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~ 1017 (1080)
...+..|++|.|+|||++.|--.=-|=|=|+.-
T Consensus 159 ~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeD 204 (474)
T KOG0558|consen 159 GESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKED 204 (474)
T ss_pred CCCchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHH
Confidence 011355669999999999988777777766543
No 204
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=98.18 E-value=1.7e-05 Score=89.42 Aligned_cols=106 Identities=22% Similarity=0.335 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEeCCCCCCc----CeEEECCHhHHHHHHHHHHH----
Q psy3968 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYG-LPVIFKAAYGGGGR----GMRVVRKMEDVEENFQRASS---- 150 (1080)
Q Consensus 80 K~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ig-fPvVVKP~~g~Gg~----GV~iv~s~eeL~~a~~~~~~---- 150 (1080)
-+..|++|+++|||+|++ ..+.+.+++.+++.++| .|+|+|+.--.||| ||+++.|.+|..++.+.++.
T Consensus 5 EYqaKelf~~~GiPvp~g--~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q 82 (387)
T COG0045 5 EYQAKELFAKYGIPVPPG--YVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ 82 (387)
T ss_pred HHHHHHHHHHcCCCCCCc--eeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence 367899999999999998 67999999999999998 79999999887776 69999999999998888765
Q ss_pred HHHHhcCCCcEEEeeccC-CCcEEEEEEEEecCCcEEE
Q psy3968 151 EAKAAFGNGAMFIEKFIE-RPRHIEVQLLGDKAGNVVH 187 (1080)
Q Consensus 151 ~a~~~~g~~~vlVEeyI~-G~~ei~v~vl~d~~G~vv~ 187 (1080)
.......-..++||+.++ -.+|+.++++.|+......
T Consensus 83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~ 120 (387)
T COG0045 83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPV 120 (387)
T ss_pred cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEE
Confidence 111000014799999999 4349999999887665444
No 205
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=98.18 E-value=4.5e-06 Score=92.46 Aligned_cols=79 Identities=15% Similarity=0.093 Sum_probs=62.1
Q ss_pred HHHHHHcCCChhhhccccCC--------------ccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNY--------------LPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~--------------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.+.|.+.|+|..++|.+.+| ++.+..+++.+|+.|..+..++.=+. -.+.++..++++
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~--------r~~~~~l~~~~~ 148 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF--------RSDLVDLLRVYR 148 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC--------CCCHHHHHHHHH
Confidence 45688899999999988765 33445556777888877666664222 256889999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++|++.|||+| .|+++|.
T Consensus 149 ~~~~~g~~~i~l~Dt~G~~~P~ 170 (262)
T cd07948 149 AVDKLGVNRVGIADTVGIATPR 170 (262)
T ss_pred HHHHcCCCEEEECCcCCCCCHH
Confidence 99999999999999 9999995
No 206
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=98.15 E-value=6.2e-05 Score=88.41 Aligned_cols=105 Identities=19% Similarity=0.289 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh---CCcEEEEeCCCCCCcC-----------eEEECCHhHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY---GLPVIFKAAYGGGGRG-----------MRVVRKMEDVEEN 144 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i---gfPvVVKP~~g~Gg~G-----------V~iv~s~eeL~~a 144 (1080)
.-+..+++|+++|||+|++ ..+.+.+|+.+.++++ ++|+|+|+.--.|||| |+++++ +|+.++
T Consensus 31 ~EyqaK~LL~~~GIpvp~~--~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~a 107 (422)
T PLN00124 31 HEYQGAELMSKYGVNVPKG--AAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEEL 107 (422)
T ss_pred CHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHHH
Confidence 4678899999999999998 5789999999999998 6999999995555544 667766 999999
Q ss_pred HHHHHHHH--HHhc---C--CCcEEEeeccCCCcEEEEEEEEecC--CcEE
Q psy3968 145 FQRASSEA--KAAF---G--NGAMFIEKFIERPRHIEVQLLGDKA--GNVV 186 (1080)
Q Consensus 145 ~~~~~~~a--~~~~---g--~~~vlVEeyI~G~~ei~v~vl~d~~--G~vv 186 (1080)
++++.... .... | -..++|||.+...+|+-+.+..|.. |.++
T Consensus 108 a~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvi 158 (422)
T PLN00124 108 AGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLI 158 (422)
T ss_pred HHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEE
Confidence 98887531 1111 1 1257866666656899999999863 4444
No 207
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.15 E-value=1.3e-05 Score=82.81 Aligned_cols=144 Identities=17% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCH-hHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcE
Q psy3968 94 IVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM-EDVEENFQRASSEAKAAFGNGAMFIEKFIERPRH 172 (1080)
Q Consensus 94 vp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~-eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~e 172 (1080)
+|++ ....+.+++.+|.++++. +|+||..|.||+||+++... ..+...++.+.. .+...+++|+|++.-++
T Consensus 12 ~P~T--~vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~-----~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 12 IPPT--LVSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTK-----NGERPVMVQPFLPEIKE 83 (173)
T ss_dssp S--E--EEES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTT-----TTTS-EEEEE--GGGGG
T ss_pred CcCE--EEECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHh-----cCCccEEEEeccccccC
Confidence 3555 456789999999999998 99999999999999999874 345554444322 23457999999996443
Q ss_pred EEEEEEEecCCcEEEEEeeeccc--ccc---ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCC
Q psy3968 173 IEVQLLGDKAGNVVHLYERDCSV--QRR---HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQ 247 (1080)
Q Consensus 173 i~v~vl~d~~G~vv~l~~r~~~~--~~~---~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~ 247 (1080)
=+..++.- +|..++...|.-.. .|. ..-..+ +. .++++. .++++.....+..-|+. ++.+|++- +
T Consensus 84 GDkRii~~-nG~~~~av~R~P~~gd~R~N~~~Gg~~~--~~-~lt~~e-~~i~~~i~~~L~~~Gl~-f~GiDvig---~- 153 (173)
T PF02955_consen 84 GDKRIILF-NGEPSHAVRRIPAKGDFRSNLAAGGSAE--PA-ELTERE-REICEQIGPKLREDGLL-FVGIDVIG---D- 153 (173)
T ss_dssp -EEEEEEE-TTEE-SEEEEE--SS-S---GGGTSCEE--EE-E--HHH-HHHHHHHHHHHHHTT---EEEEEEET---T-
T ss_pred CCEEEEEE-CCEEhHHeecCCCCCCceeeeccCCcee--ec-CCCHHH-HHHHHHHHHHHhhcCcE-EEEEeccc---c-
Confidence 33333322 45666544332110 010 111111 11 233322 23333333334444544 44589772 3
Q ss_pred EEEEEEecc
Q psy3968 248 FYFIEVNAR 256 (1080)
Q Consensus 248 ~~~iEvNpR 256 (1080)
|++|||--
T Consensus 154 -~l~EiNvt 161 (173)
T PF02955_consen 154 -KLTEINVT 161 (173)
T ss_dssp -EEEEEE-S
T ss_pred -ceEEEecc
Confidence 89999974
No 208
>PRK00915 2-isopropylmalate synthase; Validated
Probab=98.13 E-value=4.6e-06 Score=101.02 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCChhhhccccCCcc--------------ChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHH
Q psy3968 987 VYKFCDLSVQVGMDVFRVFDSLNYLP--------------NLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQ 1052 (1080)
Q Consensus 987 ~~~~~~~a~~~gid~~~v~~~ln~~~--------------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1080)
++++.+.-++.|++...+|.+.+|+. ++..+++.+|+.|..++ |+. +....++.+|++
T Consensus 81 id~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~----f~~----ed~~r~d~~~l~ 152 (513)
T PRK00915 81 IDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE----FSA----EDATRTDLDFLC 152 (513)
T ss_pred HHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE----EEe----CCCCCCCHHHHH
Confidence 44444444456777777777777764 35678889999998864 443 122368999999
Q ss_pred HHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1053 NLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1053 ~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++.+.++||+.|+|.| .|.++|.
T Consensus 153 ~~~~~~~~~Ga~~i~l~DTvG~~~P~ 178 (513)
T PRK00915 153 RVVEAAIDAGATTINIPDTVGYTTPE 178 (513)
T ss_pred HHHHHHHHcCCCEEEEccCCCCCCHH
Confidence 999999999999999999 9999995
No 209
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.13 E-value=4.6e-06 Score=99.14 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--e-eeecCceeEEecC
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--M-LLRGANAVGYTNY 982 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~-~v~~g~~l~~~~~ 982 (1080)
|+|.+|+|++||.|++||+++.+|+||+.++|.||.+|+|.++.++ + .|..|++|++|..
T Consensus 17 g~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~ 79 (464)
T PRK11892 17 GTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLE 79 (464)
T ss_pred eEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEcc
Confidence 8999999999999999999999999999999999999999999999 3 6999999999953
No 210
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=98.11 E-value=9.9e-05 Score=86.50 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=84.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEeCCCCCC----cCeEEECCHhHHHHHHHHHHHHHH-
Q psy3968 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLP-VIFKAAYGGGG----RGMRVVRKMEDVEENFQRASSEAK- 153 (1080)
Q Consensus 80 K~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfP-vVVKP~~g~Gg----~GV~iv~s~eeL~~a~~~~~~~a~- 153 (1080)
-+..|++|+++|||+|++ ..+++.+|+.+.++++||| +++|+..-.++ -||++..|.+|+.++++++.....
T Consensus 5 E~eak~lL~~yGIpvp~~--~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~ 82 (392)
T PRK14046 5 EYQAKELLASFGVAVPRG--ALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLV 82 (392)
T ss_pred HHHHHHHHHHcCCCCCCc--eEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhh
Confidence 456789999999999998 5689999999999999995 59998543333 468999999999999998876421
Q ss_pred -Hhc-----CCCcEEEeeccCCCcEEEEEEEEec-CCcEEEEE
Q psy3968 154 -AAF-----GNGAMFIEKFIERPRHIEVQLLGDK-AGNVVHLY 189 (1080)
Q Consensus 154 -~~~-----g~~~vlVEeyI~G~~ei~v~vl~d~-~G~vv~l~ 189 (1080)
... .-..++||+++++.+|+.+.+..|. .|.++.++
T Consensus 83 ~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~ 125 (392)
T PRK14046 83 THQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA 125 (392)
T ss_pred hhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence 111 1136999999998899999999886 45555553
No 211
>PRK13380 glycine cleavage system protein H; Provisional
Probab=98.10 E-value=2.5e-06 Score=85.35 Aligned_cols=69 Identities=29% Similarity=0.386 Sum_probs=57.2
Q ss_pred cccCCCCeEEEEEEec-CCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eee----ecCceeEEecCCc
Q psy3968 916 QVGAPMPGSVMEIRVK-VGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLL----RGANAVGYTNYPD 984 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~-~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v----~~g~~l~~~~~~~ 984 (1080)
...+.|.|.|+.+.+. +|++|++||++++||+|||+.+|.||.+|+|.++... +.+ ....=|+.+...+
T Consensus 37 d~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~~~d 115 (144)
T PRK13380 37 DYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDSPELVNEDPYGEGWFFRFKPAN 115 (144)
T ss_pred HHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhChHHhcCCCCCCCeEEEEEECC
Confidence 4667899999999887 8999999999999999999999999999999999887 222 2244677775444
No 212
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.05 E-value=7.1e-06 Score=100.72 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=58.6
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
.|+|++|+|++||.|++||+|+++|+|||.++|.||.+|+|.++.++ +.|..|++|++|..
T Consensus 16 eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~ 78 (590)
T TIGR02927 16 EGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGE 78 (590)
T ss_pred EEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEee
Confidence 48999999999999999999999999999999999999999999999 99999999998853
No 213
>KOG0557|consensus
Probab=97.94 E-value=1.5e-05 Score=91.24 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=59.6
Q ss_pred CCCC-eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee---eeeecCceeEEec
Q psy3968 919 APMP-GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS---MLLRGANAVGYTN 981 (1080)
Q Consensus 919 aPm~-G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~---~~v~~g~~l~~~~ 981 (1080)
+.|. |+|++|..|+||++++||+||+||++|..+++.+..+|.+.+|++. ..|..|.+|++|-
T Consensus 48 PTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 48 PTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred ccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 4464 9999999999999999999999999999999999999999999999 7899999999994
No 214
>PLN02235 ATP citrate (pro-S)-lyase
Probab=97.93 E-value=0.00034 Score=81.26 Aligned_cols=106 Identities=13% Similarity=0.231 Sum_probs=83.7
Q ss_pred HHHHHHHHHC-----CCCCCCCCCCCCCCHHHHHHHHHH---hCCc-EEEEeCCCCCCcC----eEEECCHhHHHHHHHH
Q psy3968 81 VAARQAAIDS-----GVPIVPGTPGPITTTEEAMEFCLK---YGLP-VIFKAAYGGGGRG----MRVVRKMEDVEENFQR 147 (1080)
Q Consensus 81 ~~~r~~l~~~-----GIpvp~~~~~~v~s~ee~~~~~~~---igfP-vVVKP~~g~Gg~G----V~iv~s~eeL~~a~~~ 147 (1080)
+..|++|+++ |||+|++. ..+++.+++.+++++ ++.| +||||.--.|||| |.+++|++|+.++.++
T Consensus 9 yqaK~ll~~~~~~~~gipvP~~~-v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~ 87 (423)
T PLN02235 9 YDSKRLLKEHLKRLAGIDLPIRS-AQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKE 87 (423)
T ss_pred HHHHHHHHHhhcccCCCCCCCCe-eccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHH
Confidence 5678888888 99999984 233899999999988 7764 6999999988875 8999999999999988
Q ss_pred HHHHHHHhcC----CCcEEEeeccCCCcEEEEEEEEecCCcEEE
Q psy3968 148 ASSEAKAAFG----NGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187 (1080)
Q Consensus 148 ~~~~a~~~~g----~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~ 187 (1080)
.+.......| -..++||++++-.+|+.++++.|+....+.
T Consensus 88 ~Lg~~l~t~g~~G~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii 131 (423)
T PLN02235 88 RLGKEVEMGGCKGPITTFIVEPFVPHDQEFYLSIVSDRLGCSIS 131 (423)
T ss_pred HhCCceEecCCCccEeEEEEEecCCCcceEEEEEEEecCCCEEE
Confidence 7653210001 136899999998899999999988776643
No 215
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=97.89 E-value=1.8e-05 Score=84.01 Aligned_cols=103 Identities=22% Similarity=0.360 Sum_probs=74.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEeCCCCCCc----CeEEECCHhHHHHHHHHHHHHHHH
Q psy3968 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLP-VIFKAAYGGGGR----GMRVVRKMEDVEENFQRASSEAKA 154 (1080)
Q Consensus 80 K~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfP-vVVKP~~g~Gg~----GV~iv~s~eeL~~a~~~~~~~a~~ 154 (1080)
-+..+++|+++|||+|++ ..+++++++.+++..++.+ +|+||.--.||| ||.+++|++|..++.++.......
T Consensus 4 EyqaK~ll~~~gi~vp~g--~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 4 EYQAKELLRKYGIPVPRG--VVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp HHHHHHHHHCTT----SE--EEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHcCCCCCCe--eecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467899999999999999 5789999999999999875 799999888877 589999999999888776532110
Q ss_pred --hcC-----CCcEEEeeccCCCcEEEEEEEEecCCc
Q psy3968 155 --AFG-----NGAMFIEKFIERPRHIEVQLLGDKAGN 184 (1080)
Q Consensus 155 --~~g-----~~~vlVEeyI~G~~ei~v~vl~d~~G~ 184 (1080)
..| -..++||++++-.+|+.+.+..|+...
T Consensus 82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~ 118 (202)
T PF08442_consen 82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR 118 (202)
T ss_dssp -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence 001 136899999998899999999887654
No 216
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.86 E-value=2.2e-05 Score=73.45 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=45.9
Q ss_pred ccCCCCeEEEEE-EecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 917 VGAPMPGSVMEI-RVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 917 v~aPm~G~v~~~-~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
....|.|+|+.+ ++++|+.|++||++++||+||+..+|.||.+|+|.++..+
T Consensus 23 ~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~ 75 (96)
T cd06848 23 YAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEA 75 (96)
T ss_pred HHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhh
Confidence 345678999997 4555999999999999999999999999999999988766
No 217
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.71 E-value=4.6e-05 Score=72.66 Aligned_cols=48 Identities=29% Similarity=0.538 Sum_probs=42.6
Q ss_pred CCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 921 MPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 921 m~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
+-|.|+.+-+ ++|+.|++||++++||+||+..+|.||.+|+|.++...
T Consensus 28 ~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~ 76 (110)
T TIGR03077 28 NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIA 76 (110)
T ss_pred hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 4577888855 66999999999999999999999999999999998655
No 218
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.69 E-value=4.5e-05 Score=62.26 Aligned_cols=36 Identities=36% Similarity=0.636 Sum_probs=32.5
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCc
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKME 951 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~ 951 (1080)
.|.||++|+|.+|+|++||.|++||+|++|+.-..+
T Consensus 4 ~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 4 TIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 588999999999999999999999999999876544
No 219
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=97.67 E-value=0.00032 Score=78.80 Aligned_cols=174 Identities=17% Similarity=0.297 Sum_probs=103.6
Q ss_pred cCCcEeCCcHHHHHHhcCHHHHHHHHHHC-------CCCCCCCCCCCCC-CHHHHHHHH--HHhCCcEEEEeCCCCC---
Q psy3968 62 AGIRFIGPSPYVVQQMGDKVAARQAAIDS-------GVPIVPGTPGPIT-TTEEAMEFC--LKYGLPVIFKAAYGGG--- 128 (1080)
Q Consensus 62 ~gi~~iGps~eai~~~~DK~~~r~~l~~~-------GIpvp~~~~~~v~-s~ee~~~~~--~~igfPvVVKP~~g~G--- 128 (1080)
-++.++ -++++++.+.|+..|.+.+.+. .+.+|++ ..+. +.+++.+.. ..+.||+|+||....|
T Consensus 77 P~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~--v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~ 153 (307)
T PF05770_consen 77 PEVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKF--VVINSDAESLPELLKEAGLKFPLICKPLVACGSAD 153 (307)
T ss_dssp TTSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-E--EEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSC
T ss_pred CCeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCce--EEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCcc
Confidence 467776 7789999999999999998875 6778877 3344 444444444 3478999999998665
Q ss_pred CcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CcEEEEEEEEecCCcEEEEEeeecccccc-------cc
Q psy3968 129 GRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIER-PRHIEVQLLGDKAGNVVHLYERDCSVQRR-------HQ 200 (1080)
Q Consensus 129 g~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G-~~ei~v~vl~d~~G~vv~l~~r~~~~~~~-------~~ 200 (1080)
|..|.++.+++.|.+. ..++++||||.- ..-|-|-++++ .+.+..|. |...- ..
T Consensus 154 SH~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd----~v~~v~R~-SLpn~~~~~~~~~~ 215 (307)
T PF05770_consen 154 SHKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGD----KVFVVKRP-SLPNVSSGKLDREE 215 (307)
T ss_dssp CCEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETT----EEEEEEEE-------SSS-TCGG
T ss_pred ceEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecC----EEEEEECC-CCCCCCcccccccc
Confidence 5778999999998752 358999999973 35556666644 23322221 11000 00
Q ss_pred EEEE---------------Ec--CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC-C-CCEEEEEEeccCC
Q psy3968 201 KVVE---------------IA--PAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-S-GQFYFIEVNARLQ 258 (1080)
Q Consensus 201 ~~~~---------------~~--Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-d-G~~~~iEvNpR~~ 258 (1080)
.... .. +. .....-.+.+.++|..+-++||++ .+++|++++. + |++++|.||.=+|
T Consensus 216 ~~f~~~~vs~~~~~~~~~~~d~~~~-~~~~p~~~~v~~la~~LR~~lgL~-LFgfDvI~~~~t~~~~~VIDINyFPg 290 (307)
T PF05770_consen 216 IFFDFHQVSKLESSSDLSDLDKDPS-QVEMPPDELVEKLAKELRRALGLT-LFGFDVIRENGTGGRYYVIDINYFPG 290 (307)
T ss_dssp CCCEGGGTCSTTTSSGGGSBSS-TT-TTTS--HHHHHHHHHHHHHHHT-S-EEEEEEEEGCCT-SSEEEEEEEES--
T ss_pred cceeccccCCccccCchhhcccCcc-cccCCCHHHHHHHHHHHHHHhCcc-eeeeEEEEEcCCCCcEEEEEeccCCC
Confidence 0000 00 11 011112356788888899999996 5569999986 4 6899999999765
No 220
>KOG0559|consensus
Probab=97.56 E-value=2e-05 Score=86.49 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=57.0
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
|++-.|+.++||.|++.+.|+.||++|...+|.||.+|+|++++|+ ++|+.|+-|+.|.
T Consensus 87 G~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~ 147 (457)
T KOG0559|consen 87 GDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKIS 147 (457)
T ss_pred chHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEec
Confidence 7777899999999999999999999999999999999999999999 9999999999994
No 221
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.55 E-value=9.6e-05 Score=72.65 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=55.3
Q ss_pred ccCCCCeEEEEEE-ecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eeee---cC-ceeEEecCCch
Q psy3968 917 VGAPMPGSVMEIR-VKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLLR---GA-NAVGYTNYPDN 985 (1080)
Q Consensus 917 v~aPm~G~v~~~~-v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v~---~g-~~l~~~~~~~~ 985 (1080)
......|.|+.+- .++|++|++||++++||+||...+|.||.+|+|.++... +.|. .| .-|+.+...++
T Consensus 31 ~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~~~ 109 (127)
T PRK01202 31 HAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPSDE 109 (127)
T ss_pred HHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeCCH
Confidence 3455778888884 467999999999999999999999999999999999544 4554 44 48888875543
No 222
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.55 E-value=0.002 Score=70.55 Aligned_cols=179 Identities=16% Similarity=0.139 Sum_probs=106.0
Q ss_pred HHHHHhcCHHHHHHHHHHCC--CCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHH
Q psy3968 72 YVVQQMGDKVAARQAAIDSG--VPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRAS 149 (1080)
Q Consensus 72 eai~~~~DK~~~r~~l~~~G--Ipvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~ 149 (1080)
.....+.||...|+.+++.+ ...||.. ...++.+++.- ..+.-++||||.+|+|+..+..-.+.-+...+...+.
T Consensus 13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~~--~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~ 89 (239)
T PF14305_consen 13 PLFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDIDF--DSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLN 89 (239)
T ss_pred ccceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhhh--hcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHH
Confidence 34557889999999999986 2334443 45677766532 4566789999999999887776655444443333322
Q ss_pred HHHHHhcC-----------CCcEEEeeccCCC-----cEEEEEEEEecCCcEEEEE---eeecc-----cccc--ccEEE
Q psy3968 150 SEAKAAFG-----------NGAMFIEKFIERP-----RHIEVQLLGDKAGNVVHLY---ERDCS-----VQRR--HQKVV 203 (1080)
Q Consensus 150 ~~a~~~~g-----------~~~vlVEeyI~G~-----~ei~v~vl~d~~G~vv~l~---~r~~~-----~~~~--~~~~~ 203 (1080)
.--...++ ...+++|++|+.. .+|-+-++ +|++..+. .|... +..+ .....
T Consensus 90 ~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF---~G~~~~i~v~~~r~~~~~~~~yd~dw~~l~~~ 166 (239)
T PF14305_consen 90 RWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF---NGKPKFIQVDSDRFGNHKRNFYDRDWNRLPFR 166 (239)
T ss_pred HHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE---CCEEEEEEEEeCCCCCeEEEEECcccCCCccc
Confidence 11111111 2479999999753 24555444 34333221 11000 0000 00000
Q ss_pred EEc--CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCC
Q psy3968 204 EIA--PAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVE 260 (1080)
Q Consensus 204 ~~~--Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~ 260 (1080)
... ....-.++..++|.++|+++.+.+. .+.|||... +|++||-|+...++++
T Consensus 167 ~~~~~~~~~~kP~~l~emi~iA~~Ls~~f~---fvRVDlY~~-~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 167 SDYPPDEDIPKPKNLEEMIEIAEKLSKGFP---FVRVDLYNV-DGKIYFGELTFTPGAG 221 (239)
T ss_pred cCCCCCCCCCCChhHHHHHHHHHHHccCCC---EEEEEEEEe-CCcEEEEeeecCCCCc
Confidence 011 1111234567889999999888755 478999887 5669999999998875
No 223
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.53 E-value=7.3e-05 Score=73.47 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=52.0
Q ss_pred cCCCCeEEEEEE-ecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eee----ecCceeEEecCCc
Q psy3968 918 GAPMPGSVMEIR-VKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLL----RGANAVGYTNYPD 984 (1080)
Q Consensus 918 ~aPm~G~v~~~~-v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v----~~g~~l~~~~~~~ 984 (1080)
...+.|.|+.+- .++|++|++||++++|||||+..+|.||++|+|.++.-. +.+ ....=|+.+...+
T Consensus 31 a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~~py~~gWl~~i~~~~ 107 (127)
T TIGR00527 31 AQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALEDSPELVNEDPYGGGWLIKVKLSD 107 (127)
T ss_pred HhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhhChHHHhCCCccCcEEEEEecCC
Confidence 345678887774 457999999999999999999999999999999998776 222 2334666665444
No 224
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.45 E-value=0.00019 Score=68.82 Aligned_cols=49 Identities=29% Similarity=0.510 Sum_probs=42.8
Q ss_pred CCCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 920 PMPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 920 Pm~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
-+-|.|+.+-. ++|++|++||++++||+||+..+|.||.+|+|.++.-.
T Consensus 29 ~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~ 78 (114)
T PRK00624 29 ENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA 78 (114)
T ss_pred HhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence 35578888855 56999999999999999999999999999999998544
No 225
>PLN02321 2-isopropylmalate synthase
Probab=97.44 E-value=0.00039 Score=85.32 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1013 NLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1013 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.++.+++.+|+.|.. .+.|+- +..-..+.+|.+++++.+.++||+.|+|.| .|.++|.
T Consensus 211 ~~~~~V~~Ak~~G~~---~v~fs~----EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~ 269 (632)
T PLN02321 211 IARDMVKYARSLGCE---DVEFSP----EDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPS 269 (632)
T ss_pred HHHHHHHHHHHcCCc---eEEEec----ccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHH
Confidence 466777888888864 344442 122358899999999999999999999999 9999984
No 226
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.39 E-value=0.00039 Score=82.33 Aligned_cols=73 Identities=29% Similarity=0.410 Sum_probs=62.9
Q ss_pred CCCcccCCCCeEEEEEE-ecCCCeeecCCEEEEEEc-------------c------------------------------
Q psy3968 913 VPGQVGAPMPGSVMEIR-VKVGDKVEKGAALVVLSA-------------M------------------------------ 948 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~-v~~G~~V~~g~~~~~iea-------------m------------------------------ 948 (1080)
....|.|+.+|.|.+++ |++||.|++||+|+.|++ .
T Consensus 122 ~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~ 201 (409)
T PRK09783 122 QYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI 201 (409)
T ss_pred ceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34468999999999998 999999999999999982 0
Q ss_pred -----CCceeEecCCCeEEeEeeee--eeeecCceeEEecCCch
Q psy3968 949 -----KMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPDN 985 (1080)
Q Consensus 949 -----Km~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~~ 985 (1080)
.-...|+||.+|+|.+..+. +.|..|++|+.|...+.
T Consensus 202 ~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 202 ATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred HcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 01357999999999999999 99999999999976654
No 227
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=97.30 E-value=0.0051 Score=63.63 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=95.4
Q ss_pred CcHHHHHHhcCHHHHHHHH----HHC---CCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHH
Q psy3968 69 PSPYVVQQMGDKVAARQAA----IDS---GVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDV 141 (1080)
Q Consensus 69 ps~eai~~~~DK~~~r~~l----~~~---GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL 141 (1080)
++.+++-.+.||......| ++. .+|..+-++ ..+..+. .....||+|||--.+.+|.|-.++++..++
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~--ypnh~em---~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~ 75 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTY--YPNHREM---LSAPRFPVVVKVGHAHAGMGKVKVDNQQDF 75 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EE--ESSGGGG---CS-SSSSEEEEESS-STTTTEEEE-SHHHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeee--cCChhhh---ccCCCCCEEEEEccccCceeEEEEccHHHH
Confidence 4667888888996544333 333 355443221 2223222 233579999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecc-cc--ccccEEEEEcCCCCCCHHHHHH
Q psy3968 142 EENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCS-VQ--RRHQKVVEIAPAPHLDINVRNK 218 (1080)
Q Consensus 142 ~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~-~~--~~~~~~~~~~Pa~~l~~~~~~~ 218 (1080)
++...-+... +.-+.+|.||+-..++.++-+++ +......+..+ -. .......+..+. + ++
T Consensus 76 qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~---~ykA~~R~sis~nWK~N~gsa~lEqi~~---~----~r 139 (203)
T PF02750_consen 76 QDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN---NYKAYMRTSISGNWKANTGSAMLEQIAM---T----ER 139 (203)
T ss_dssp HHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT---EEEEEEEEESSSTSSTTSSSEEEEEE----------HH
T ss_pred HHHHHHHHhc------CceEEeeccccceeEEEEEEEcC---eEEEEEEccccccccccccchheeecCC---C----hH
Confidence 8766555432 45688999998766677766644 33333222111 11 111223333332 2 46
Q ss_pred HHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEec
Q psy3968 219 MTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNA 255 (1080)
Q Consensus 219 l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNp 255 (1080)
...++.++.+.+|---.+.+|.+..+||+-|++|+|-
T Consensus 140 yk~Wvd~~s~lfGGlDI~~v~ai~~kdGke~Iievnd 176 (203)
T PF02750_consen 140 YKLWVDECSELFGGLDICAVDAIHGKDGKEYIIEVND 176 (203)
T ss_dssp HHHHHHHHGGGGG--SEEEEEEEEETTS-EEEEEEE-
T ss_pred HHHHHHHHHHHcCCccEEEEEEEEcCCCCEEEEEecC
Confidence 6667888888885555778999999999999999995
No 228
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=97.25 E-value=0.00044 Score=82.94 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCc
Q psy3968 995 VQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RIL 1073 (1080)
Q Consensus 995 ~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~ 1073 (1080)
..+|.+...++ +.+..+++.+|+.|.+ .++|.. +....++.+|++++++++.++|||.|||+| .|+
T Consensus 198 ~kl~~s~ee~l------~~~~~~V~~Ak~~G~~---~v~f~~----EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~ 264 (503)
T PLN03228 198 YKLKKTKEEVI------EMAVSSIRYAKSLGFH---DIQFGC----EDGGRSDKEFLCKILGEAIKAGATSVGIADTVGI 264 (503)
T ss_pred HHhCCCHHHHH------HHHHHHHHHHHHcCCc---eEEecc----ccccccCHHHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 34566555553 3567788899999875 233332 112358899999999999999999999999 999
Q ss_pred cCCC
Q psy3968 1074 LSPV 1077 (1080)
Q Consensus 1074 ~~p~ 1077 (1080)
++|.
T Consensus 265 ~tP~ 268 (503)
T PLN03228 265 NMPH 268 (503)
T ss_pred CCHH
Confidence 9995
No 229
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.24 E-value=0.00053 Score=78.96 Aligned_cols=36 Identities=36% Similarity=0.454 Sum_probs=32.3
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
+.-.|.||++|.|.+++|++||.|++||+|+.|+.-
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECch
Confidence 345689999999999999999999999999999653
No 230
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=97.22 E-value=0.0007 Score=82.15 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=47.0
Q ss_pred cChHHHHHHHHhcCCeEEEEE-EEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1012 PNLILGMEAAGKAGGVVEAAI-SYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1012 ~n~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+.++.+++.+|+.|..++... ++. |.. ..+.+|.+++++.+.++|++.|||.| .|.++|.
T Consensus 122 ~~~~~~v~~ak~~g~~V~~~~e~f~----D~~--r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~ 183 (526)
T TIGR00977 122 AMIYDTVAYLKRQGDEVIYDAEHFF----DGY--KANPEYALATLATAQQAGADWLVLCDTNGGTLPH 183 (526)
T ss_pred HHHHHHHHHHHHcCCeEEEEeeeee----ecc--cCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHH
Confidence 345778889999999886322 221 111 36889999999999999999999999 9999985
No 231
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=97.13 E-value=0.0026 Score=71.96 Aligned_cols=44 Identities=27% Similarity=0.512 Sum_probs=25.4
Q ss_pred cEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC
Q psy3968 118 PVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERP 170 (1080)
Q Consensus 118 PvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~ 170 (1080)
-+|+||..++.|+|++++++.+++.+. .......++||+||+.|
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~P 110 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENP 110 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB
T ss_pred EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCC
Confidence 499999999999999999999888753 11235789999999975
No 232
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.06 E-value=0.00093 Score=77.46 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
.-.|.++++|.|.+++|++||.|++||+|+.|+.
T Consensus 48 ~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 48 VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 3468899999999999999999999999999987
No 233
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=97.06 E-value=0.00097 Score=80.55 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=46.3
Q ss_pred cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1012 PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1012 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+.+..+++.+|+.|.. +.|+. .|. -..+.+|.+++++.+.++|++.|||.| .|.++|.
T Consensus 117 ~~~~~~v~~a~~~g~~----v~f~~--Ed~--~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~ 175 (494)
T TIGR00973 117 ERAVGMVKYAKNFTDD----VEFSC--EDA--GRTEIPFLARIVEAAINAGATTINIPDTVGYALPA 175 (494)
T ss_pred HHHHHHHHHHHHcCCe----EEEEc--CCC--CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHH
Confidence 3566788889999875 34442 122 257899999999999999999999999 9999995
No 234
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.04 E-value=0.001 Score=75.82 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=60.5
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCC---------------------------------------------
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKM--------------------------------------------- 950 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm--------------------------------------------- 950 (1080)
.|.++.+|.|.+++|++||.|++||+|+.|+.-..
T Consensus 49 ~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~ 128 (310)
T PRK10559 49 AIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQAN 128 (310)
T ss_pred EEccCCceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 36788999999999999999999999999986210
Q ss_pred -------------------------ceeEecCCCeEEeEeeee--eeeecCceeEEecCCch
Q psy3968 951 -------------------------EMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPDN 985 (1080)
Q Consensus 951 -------------------------~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~~ 985 (1080)
...|+||.+|+|.++.+. +.|..|++|+.|-..++
T Consensus 129 ~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 129 NVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence 257999999999999999 99999999998865554
No 235
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.03 E-value=0.00081 Score=76.74 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=61.4
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCC--------------------------------------------
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKM-------------------------------------------- 950 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm-------------------------------------------- 950 (1080)
..|.||.+|.|.+++|++||.|++||+|+.++.--.
T Consensus 27 ~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~ 106 (322)
T TIGR01730 27 ADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDD 106 (322)
T ss_pred EEEEccccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 468999999999999999999999999999964110
Q ss_pred ---------------------------ceeEecCCCeEEeEeeee--eeeecCceeEEecCCch
Q psy3968 951 ---------------------------EMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPDN 985 (1080)
Q Consensus 951 ---------------------------~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~~ 985 (1080)
...|+||.+|+|..+.+. +.|..|++|+.|...++
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 170 (322)
T TIGR01730 107 AKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLDP 170 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCCc
Confidence 236999999999999888 99999999999976554
No 236
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.87 E-value=0.0015 Score=75.36 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=30.3
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
.|.|+++|.|.+++|++||.|++||+|+.|+.
T Consensus 45 ~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 45 NLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 58899999999999999999999999999974
No 237
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=96.76 E-value=0.0037 Score=69.98 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=40.7
Q ss_pred ChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCc-EEEEec-CCccCCC
Q psy3968 1013 NLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTH-VLCIKV-RILLSPV 1077 (1080)
Q Consensus 1013 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~kd-~~~~~p~ 1077 (1080)
.+..+++.+|+.|..++.++ .+.+++.....-++|-.++++...++|++ .|+|.| .|+.+|.
T Consensus 116 ~~~~~v~~a~~~g~~v~~~~---ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~ 179 (279)
T cd07947 116 KYLEIVEEALDHGIKPRCHL---EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPY 179 (279)
T ss_pred HHHHHHHHHHHCCCeEEEEE---EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc
Confidence 45677888999999988777 23222210022234444444444458999 799999 9999994
No 238
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.73 E-value=0.0025 Score=75.14 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
.-.|.|+.+|.|.+++|++||.|++||+|+.|+.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 3468899999999999999999999999999974
No 239
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.72 E-value=0.0022 Score=75.50 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=59.9
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCC--------------------------------------------
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKM-------------------------------------------- 950 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm-------------------------------------------- 950 (1080)
..|.++++|.|.+++|++||.|++||+|+.|+.--.
T Consensus 64 ~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~ 143 (385)
T PRK09578 64 AEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE 143 (385)
T ss_pred EEEeccCcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 468999999999999999999999999999976211
Q ss_pred ---------------------------ceeEecCCCeEEeEeeee--eeeecC--ceeEEecCCch
Q psy3968 951 ---------------------------EMVVQAPVQGVVKSIDAS--MLLRGA--NAVGYTNYPDN 985 (1080)
Q Consensus 951 ---------------------------~~~i~a~~~G~v~~~~~~--~~v~~g--~~l~~~~~~~~ 985 (1080)
...|+||++|+|.+..++ +.|..| ++|+.|...++
T Consensus 144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence 147999999999999999 889875 58888865554
No 240
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=96.71 E-value=0.0037 Score=70.14 Aligned_cols=82 Identities=20% Similarity=0.126 Sum_probs=60.8
Q ss_pred HHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.+.|.+.|++...+|-+..|. +.++..++++|+.|..++.++.-. +.|. ..+.+|++++++
T Consensus 80 ~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~---~~~~--r~~~~~~~~~~~ 154 (280)
T cd07945 80 VDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDW---SNGM--RDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeC---CCCC--cCCHHHHHHHHH
Confidence 445666777766666432221 123445888999999988888642 3342 468999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++|+|.|+|+| .|+++|.
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~ 176 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPF 176 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHH
Confidence 99999999999999 9999995
No 241
>KOG3895|consensus
Probab=96.41 E-value=0.02 Score=63.39 Aligned_cols=201 Identities=19% Similarity=0.166 Sum_probs=121.7
Q ss_pred HHcCCCEEEeCCCc--cccc---HHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHH----HHCC---CCCCCCCCCCC
Q psy3968 35 KENDVDAIHPGYGF--LSER---SDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAA----IDSG---VPIVPGTPGPI 102 (1080)
Q Consensus 35 ~~~~iDaVipg~g~--lsE~---~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l----~~~G---Ipvp~~~~~~v 102 (1080)
+...+|+|+.+-+. ..++ ..+...+...||+++ ++-.++-.+.||.+.+.-| +..| +|..+-++ .
T Consensus 152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~--y 228 (488)
T KOG3895|consen 152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTF--Y 228 (488)
T ss_pred eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceeee--c
Confidence 44578888887552 2222 345567778999998 8899999999996655444 3445 55443321 1
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecC
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~ 182 (1080)
-+-. .....-.||+|||--.+..|.|-.+|+|.+|+.+.-.-+. .. +-..-+|.||+....+.++-++.+.
T Consensus 229 PnHK---~m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svva-l~-----~Tyat~epFiDaKYDiriQKIG~nY 299 (488)
T KOG3895|consen 229 PNHK---EMLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVA-LT-----KTYATAEPFIDAKYDIRIQKIGHNY 299 (488)
T ss_pred CCch---hhccCCCCcEEEEecccccccceeeecchhhhHhHHHHHH-HH-----hhhhhccccccccceeehhhhhhhH
Confidence 1111 1223346999999999999999999999999876543321 11 2345689999986666666665432
Q ss_pred CcEEEEEeeeccccccccEEEEEcCCCCCCH-HHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEec
Q psy3968 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDI-NVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNA 255 (1080)
Q Consensus 183 G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~-~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNp 255 (1080)
...+ .+ ++ ..+++....+ + -|.. ..-++-+-+...+.+.+|--..|.|+.+...||+=|++|||-
T Consensus 300 Kaym---Rt--sI-sgnWKtNtGS-a-mLEQIamseRyklwvdtcse~fGgldICav~alhsKdGrd~i~eV~d 365 (488)
T KOG3895|consen 300 KAYM---RT--SI-SGNWKTNTGS-A-MLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSKDGRDYIIEVMD 365 (488)
T ss_pred HHHh---hh--hh-ccCcccCchH-H-HHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecccchhheeeecc
Confidence 1111 10 11 1122211100 0 0100 011233334555666777666888999999999999999987
No 242
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.40 E-value=0.0049 Score=72.86 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=59.1
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCC-------------------------------------------
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKM------------------------------------------- 950 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm------------------------------------------- 950 (1080)
...|.|+.+|.|.+++|++||.|++||+|+.|+.-..
T Consensus 65 ~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d 144 (397)
T PRK15030 65 IAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYD 144 (397)
T ss_pred EEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 3468899999999999999999999999999974210
Q ss_pred ----------------------------ceeEecCCCeEEeEeeee--eeeecCce--eEEecCCc
Q psy3968 951 ----------------------------EMVVQAPVQGVVKSIDAS--MLLRGANA--VGYTNYPD 984 (1080)
Q Consensus 951 ----------------------------~~~i~a~~~G~v~~~~~~--~~v~~g~~--l~~~~~~~ 984 (1080)
...|+||++|+|.+..+. +.|..|++ |+.|...+
T Consensus 145 ~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 210 (397)
T PRK15030 145 QALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 210 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecC
Confidence 247999999999999999 99999984 67775444
No 243
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.39 E-value=0.0053 Score=71.90 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=31.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|.||++|.|.+++|++||.|++||+|+.|+.
T Consensus 61 ~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 61 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 3468899999999999999999999999999987
No 244
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.37 E-value=0.0082 Score=65.09 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=57.6
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-eeeecCceeEEecC
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-MLLRGANAVGYTNY 982 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-~~v~~g~~l~~~~~ 982 (1080)
.-|+||.+|.+.. .++-||.|+|||+|+.++. ++|+||.+|+|..+.-. -.|.+|--++.|..
T Consensus 165 r~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGlirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 165 RVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred EEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEecCCCCcCCCCEEEEECC
Confidence 4599999998877 9999999999999999987 79999999999999888 89999999999964
No 245
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.37 E-value=0.0053 Score=72.96 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=59.0
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC-------------------------------------------
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK------------------------------------------- 949 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK------------------------------------------- 949 (1080)
+.-.|.++++|.|.+++|++||.|++||+|+.|..-.
T Consensus 86 ~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~l 165 (415)
T PRK11556 86 NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQEL 165 (415)
T ss_pred eEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH
Confidence 3456899999999999999999999999999995420
Q ss_pred ----------------------------CceeEecCCCeEEeEeeee--eeeecCc--eeEEecCCc
Q psy3968 950 ----------------------------MEMVVQAPVQGVVKSIDAS--MLLRGAN--AVGYTNYPD 984 (1080)
Q Consensus 950 ----------------------------m~~~i~a~~~G~v~~~~~~--~~v~~g~--~l~~~~~~~ 984 (1080)
-...|+||++|+|....+. +.|..|+ +|+.|...+
T Consensus 166 d~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 232 (415)
T PRK11556 166 DAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTH 232 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCC
Confidence 0248999999999999888 8999874 677775444
No 246
>PF06973 DUF1297: Domain of unknown function (DUF1297); InterPro: IPR009720 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mechanism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the C-terminal domain of PurP, which is homologous to the ATP-GRASP fold and thus may be involved in ATP-binding. It is almost always found in association with IPR010672 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2R85_B 2R87_E 2R84_A 2R86_A 2PBZ_B 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=96.35 E-value=0.015 Score=59.53 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=61.0
Q ss_pred CcEEEeeccCCCcEEEEEEEEecCCcEEEEE---eeecc-cc----------------ccccEEEEEcCCCCCCHHHHHH
Q psy3968 159 GAMFIEKFIERPRHIEVQLLGDKAGNVVHLY---ERDCS-VQ----------------RRHQKVVEIAPAPHLDINVRNK 218 (1080)
Q Consensus 159 ~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~---~r~~~-~~----------------~~~~~~~~~~Pa~~l~~~~~~~ 218 (1080)
.++.||||+-| ..+.+..+...--.-+-+. .|-.+ .. ..+ ......|. .+.+.+.++
T Consensus 21 ~~~~IeEyviG-~~~~~~yFySpi~~~~Ellg~D~R~esn~Dg~~RlPa~~Ql~~~~~p~~-vvvGn~p~-vlRESLL~~ 97 (188)
T PF06973_consen 21 ENAIIEEYVIG-VPFYFHYFYSPIKDRVELLGIDRRYESNIDGLVRLPAKQQLELNIEPSY-VVVGNIPA-VLRESLLPK 97 (188)
T ss_dssp CCEEEEE---S-EEEEEEEEEETTTTEEEEEEEEEEEEEETCCCCCS-HHHHHCCT----E-EEEEEEEE-EE-GGGHHH
T ss_pred cccEEEEEecC-ceEEEeeecccccCceeeeeeeeEEEecchhhhcCCcHHHhccCCCCce-EEECCccc-chhHhhHHH
Confidence 47999999999 6788887764322222221 11111 10 001 11223354 467778888
Q ss_pred HHHHHHHHHHHc------CCcceEEEEEEEcCCCCEEEEEEeccCCCCccc
Q psy3968 219 MTDLAVKLAKHV------GYSNAGTVEFLCDESGQFYFIEVNARLQVEHTV 263 (1080)
Q Consensus 219 l~~~a~~i~~al------g~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~ 263 (1080)
+.+++.+++++. |+-|++++|.+++++.++++.|+.+|+.|+..+
T Consensus 98 vfe~ge~fV~a~k~l~~PG~iGPFcLq~ivt~dle~vvfevS~RI~gGTN~ 148 (188)
T PF06973_consen 98 VFEMGERFVEASKELVPPGMIGPFCLQSIVTDDLEFVVFEVSARIVGGTNV 148 (188)
T ss_dssp HHHHHHHHHHHHHHHSTT---EEEEEEEEE-TTSSEEEEEEESSB-GGGGG
T ss_pred HHHHHHHHHHHHHHhcCCCccccceEEEEEcCCceEEEEEEeccccCCCCC
Confidence 888888877665 788999999999999999999999999985444
No 247
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.33 E-value=0.022 Score=53.66 Aligned_cols=45 Identities=36% Similarity=0.500 Sum_probs=39.6
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
|.-.+..|++||+|++||.|+.-+. -+...|.||++|+|+.|.-.
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeee
Confidence 3445779999999999999999987 66899999999999998776
No 248
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.31 E-value=0.0052 Score=72.38 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=59.4
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC---------------------------------------------
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK--------------------------------------------- 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK--------------------------------------------- 949 (1080)
..|.++.+|.|.+++|++||.|++||+|+.|+.--
T Consensus 62 ~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~ 141 (385)
T PRK09859 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDT 141 (385)
T ss_pred EEEeccCcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 45889999999999999999999999999998420
Q ss_pred --------------------------CceeEecCCCeEEeEeeee--eeeecCc--eeEEecCCch
Q psy3968 950 --------------------------MEMVVQAPVQGVVKSIDAS--MLLRGAN--AVGYTNYPDN 985 (1080)
Q Consensus 950 --------------------------m~~~i~a~~~G~v~~~~~~--~~v~~g~--~l~~~~~~~~ 985 (1080)
-...|+||++|+|.+..+. +.|..|+ +|+.|...++
T Consensus 142 a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 142 ARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence 1258999999999999999 8898884 6887755443
No 249
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.19 E-value=0.0084 Score=58.67 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=37.2
Q ss_pred eEEEEEE-ecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 923 GSVMEIR-VKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 923 G~v~~~~-v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
|.|+.+. .++|+++++|++++.||+.|...++.||++|+|.++.-.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 6777774 456999999999999999999999999999999988766
No 250
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.98 E-value=0.0076 Score=58.61 Aligned_cols=49 Identities=29% Similarity=0.448 Sum_probs=43.9
Q ss_pred CCCeEEEEE-EecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 920 PMPGSVMEI-RVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 920 Pm~G~v~~~-~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
-+-|.|+-+ +-++|++|++|+.+++||+-|--.+|.||.+|+|.++.-.
T Consensus 36 ~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 36 DQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred HhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 456888888 5788999999999999999999999999999999888765
No 251
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.96 E-value=0.0093 Score=52.25 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=30.9
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
...+.||+.|+|.++++++||.|+.||+|+.||
T Consensus 38 ~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 38 EIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred cceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 456899999999999999999999999999987
No 252
>COG3608 Predicted deacylase [General function prediction only]
Probab=95.79 E-value=0.02 Score=64.53 Aligned_cols=67 Identities=27% Similarity=0.436 Sum_probs=59.6
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc---CCceeEecCCCeEEeEeeeeeeeecCceeEEec
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM---KMEMVVQAPVQGVVKSIDASMLLRGANAVGYTN 981 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam---Km~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~ 981 (1080)
..-+.||-.| +++-+|+.||+|++||.|+.+=.+ +-+.||+|+++|+|....-...|+.|+++..+.
T Consensus 256 ~~~i~Ap~~G-~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v~~Gdl~~~v~ 325 (331)
T COG3608 256 DEMIRAPAGG-LVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLVQPGDLLKVVG 325 (331)
T ss_pred cceeecCCCc-eEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeeccccCCCCeeeeec
Confidence 3358888888 668899999999999999999988 889999999999999888889999999998763
No 253
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=95.67 E-value=0.013 Score=51.47 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=30.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
...|.||++|+|.++++++||.|+.|++|++|+
T Consensus 39 ~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 39 EIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred eeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 456899999999999999999999999999874
No 254
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=95.60 E-value=0.033 Score=64.40 Aligned_cols=57 Identities=18% Similarity=0.012 Sum_probs=45.6
Q ss_pred ChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1013 NLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1013 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.++.+++.+++.|..+...++=+. ..+.++++++++.+.++|++.+++.| .|.++|.
T Consensus 111 ~v~~~~e~a~~~g~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~ 168 (344)
T TIGR02146 111 SARETIEYAKSAGLEVRFSAEDTF--------RSELADLLSIYETVGVFGVDRVGIADTVGKAAPR 168 (344)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCC--------CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHH
Confidence 455678888888876555554332 46789999999999999999999999 9999884
No 255
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=95.51 E-value=0.015 Score=54.56 Aligned_cols=52 Identities=31% Similarity=0.374 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCC-cccccHHHHHHHHHcCCcEeCCcHHHHHH
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYG-FLSERSDFAQAVLDAGIRFIGPSPYVVQQ 76 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g-~lsE~~~~a~~l~~~gi~~iGps~eai~~ 76 (1080)
+..|.+.|+++|+++++|.+++|.+ .|. ..+++.|.+.||+++||+.++.++
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE~pL~--~Gl~D~l~~~gi~vfGP~k~aA~L 99 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPEAPLV--AGLADALRAAGIPVFGPSKEAARL 99 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSHHHHH--TTHHHHHHHTT-CEES--HHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECChHHHH--HHHHHHHHHCCCcEECcCHHHHhc
Confidence 5788999999999999999999987 444 567899999999999999988765
No 256
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=95.45 E-value=0.014 Score=66.82 Aligned_cols=33 Identities=45% Similarity=0.676 Sum_probs=23.8
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|.||.+|.| +|+|++||.|++||+|+.++.
T Consensus 21 ~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 21 EVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred EEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 346889999999 999999999999999999964
No 257
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.43 E-value=0.041 Score=62.99 Aligned_cols=66 Identities=26% Similarity=0.326 Sum_probs=55.8
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc----CCceeEecCCCeEEeEeeeeeeeecCceeEEec
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM----KMEMVVQAPVQGVVKSIDASMLLRGANAVGYTN 981 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam----Km~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~ 981 (1080)
..|.||.+|.+ ...|+.||.|++||+|..|--. +...+|+||.+|+|......-.|..|++|+.|.
T Consensus 245 ~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 245 CYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPGLVRRGDCLAVLA 314 (316)
T ss_pred EEEEcCCCeEE-EEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCCccCCCCEEEEEe
Confidence 46899999955 5789999999999999988665 456789999999998766667799999999774
No 258
>PRK07051 hypothetical protein; Validated
Probab=95.36 E-value=0.02 Score=51.60 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=30.0
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
..|.||.+|+|.++++++||.|+.||+|+.|+
T Consensus 48 ~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 45899999999999999999999999999986
No 259
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.25 E-value=0.018 Score=57.83 Aligned_cols=34 Identities=44% Similarity=0.617 Sum_probs=31.4
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|.||..|+|.+|+|++||.|+.||+|++|+.
T Consensus 107 eneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~~ 140 (140)
T COG0511 107 ENEIEAPADGVVKEILVKNGDPVEYGDPLAVIEP 140 (140)
T ss_pred cceecCCCCcEEEEEEecCCCccCCCCEEEEecC
Confidence 3569999999999999999999999999999974
No 260
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.25 E-value=0.046 Score=61.73 Aligned_cols=65 Identities=32% Similarity=0.374 Sum_probs=54.9
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc--CCceeEecCCCeEEeEeeeeeeeecCceeEEe
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM--KMEMVVQAPVQGVVKSIDASMLLRGANAVGYT 980 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam--Km~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~ 980 (1080)
..+.||-+|.+. ..++.||.|++||+|+.|-.. ....+|+||.+|+|..+...-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLR-SLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEE-EecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCCccCCCCEEEEe
Confidence 468999999866 599999999999999988542 12368999999999877777899999999876
No 261
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.20 E-value=0.046 Score=62.02 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=56.4
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc---CCceeEecCCCeEEeEeeeeeeeecCceeEEe
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM---KMEMVVQAPVQGVVKSIDASMLLRGANAVGYT 980 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam---Km~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~ 980 (1080)
+...|.||-+|.+ +..|+.||.|++||+|..|=.. ....+|+||.+|+|..+...-.|..|++|+.|
T Consensus 228 ~~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~p~v~~G~~l~~i 297 (298)
T cd06253 228 DVVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREYPLVYEGSLVARI 297 (298)
T ss_pred ceEEEEcCCCeEE-EECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecCCeecCCceEEEe
Confidence 3456899999955 5569999999999999988653 34678999999999988888999999999876
No 262
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=95.09 E-value=0.053 Score=62.18 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=55.4
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccC----CceeEecCCCeEEeEeeeeeeeecCceeEEe
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK----MEMVVQAPVQGVVKSIDASMLLRGANAVGYT 980 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK----m~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~ 980 (1080)
-|.||-+|.+. ..|+.||.|++||+|..|=..- ...+|+||.+|+|-.....-.|..|+.|+.|
T Consensus 257 ~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 257 FIFAEDDGLIE-FMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFPGLIKSGDCIAVL 324 (325)
T ss_pred EEEcCCCeEEE-EecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCCCccCCCCEEEEe
Confidence 58999999665 7899999999999999886642 4689999999999987777999999999876
No 263
>PRK06748 hypothetical protein; Validated
Probab=95.02 E-value=0.034 Score=50.32 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=30.8
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
.|.||-.|+|.+++|++||.|+.||+|++|+..
T Consensus 44 ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 44 EIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 688999999999999999999999999999753
No 264
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=94.81 E-value=0.14 Score=47.73 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=52.5
Q ss_pred eEEEEeeeccCCCCCCCCCC-----CCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHH
Q psy3968 299 GFAIQCRVTTEDPAKNFQPD-----TGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNR 373 (1080)
Q Consensus 299 g~ai~~ri~ae~p~~~f~p~-----~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~r 373 (1080)
+..+...-||+++..++... ...+..+... +.. ..|..++.+ +|+..|++.|+|.++|++++++
T Consensus 4 ~vv~as~GYP~~~~~g~~I~~~~~~~~~~~vf~ag----v~~-----~~~~l~t~G--GRvl~v~~~g~tl~eA~~~ay~ 72 (93)
T PF02843_consen 4 GVVLASKGYPGSYEKGFPITGEEEEPEGVHVFHAG----VKK-----EDGQLVTNG--GRVLTVVALGDTLEEAREKAYE 72 (93)
T ss_dssp EEEEEETTTTSS--SS-BEBSHHHTSTTEEEEESS----EEE-----ETTEEEE-S--SEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCCCEEecCccCCCCCEEEEeE----EEe-----eCCEEEecC--CeEEEEEEEcCCHHHHHHHHHH
Confidence 44566666777776655421 1112333332 221 345677766 8999999999999999999999
Q ss_pred HhhccEEccc--ccCHHH
Q psy3968 374 ALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 374 al~~i~I~Gv--~tni~~ 389 (1080)
+++.+.+.|. ++||.+
T Consensus 73 ~i~~I~~~g~~yR~DIG~ 90 (93)
T PF02843_consen 73 AIEKIDFPGMFYRKDIGH 90 (93)
T ss_dssp HHTTSB-TTEE--STTTH
T ss_pred HHhccCCCCCEEcCccCh
Confidence 9999999997 899875
No 265
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=94.77 E-value=0.038 Score=45.11 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=31.7
Q ss_pred eeEecCCCeEEeEeeee--eeeecCceeEEecCCchh
Q psy3968 952 MVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPDNV 986 (1080)
Q Consensus 952 ~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~~~ 986 (1080)
..|.||.+|+|.+++|+ +.|+.||+|++++.++..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 57899999999999999 999999999999876654
No 266
>PRK12784 hypothetical protein; Provisional
Probab=94.77 E-value=0.16 Score=44.46 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=61.4
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCcee-EecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMV-VQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~-i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
..|.||--|+|-+++|.+++.|-+=++|+.|+.|.=+.+ |+--++|-|..+.|. |.|..+.+|+++.
T Consensus 6 e~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 6 EEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 358899999999999999999999999999999986665 777899999999999 9999999999885
No 267
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.57 E-value=0.33 Score=54.62 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=94.6
Q ss_pred HHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q psy3968 32 RVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEF 111 (1080)
Q Consensus 32 ~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~ 111 (1080)
+-+.+.+|....-.+|.....+-++.....+++. ++. +.. -.-+...+..+..=-+.+++ .+-+.+++..+
T Consensus 59 ~~A~~LGI~~~~DLfGGvVph~FvATKaItH~L~--~~~--a~a---P~GW~~~fa~~~~~~vL~G~--tvFs~~DA~~A 129 (355)
T PF11379_consen 59 AQAARLGIRGEQDLFGGVVPHAFVATKAITHPLV--GPD--AAA---PAGWSPAFAERVRDAVLPGY--TVFSREDARRA 129 (355)
T ss_pred hHHHHcCCCChHhccCCCcCcceeeeccccCcCC--CCC--CCC---CCCcCHHHHHHHhhhccCCc--cccCHHHHHHH
Confidence 4666677766555555444444344444444443 222 111 12233344444444455664 47788898888
Q ss_pred HHHh--CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEE
Q psy3968 112 CLKY--GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLY 189 (1080)
Q Consensus 112 ~~~i--gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~ 189 (1080)
++.+ +-|+=+||..+.||+|..++.+.++|+.++......... ...+++|+-++.+.-+||.-+.- .|..+..+
T Consensus 130 ~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~T~SVGqv~v-~g~~~SY~ 205 (355)
T PF11379_consen 130 ARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVVTYSVGQVRV-AGLVASYY 205 (355)
T ss_pred HHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCceeeEEEEEE-CCEEEEEe
Confidence 7764 569999999999999999999999999999776543332 34689999999988888887755 33444443
No 268
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=94.52 E-value=0.44 Score=47.20 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=72.5
Q ss_pred CcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecccc
Q psy3968 117 LPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQ 196 (1080)
Q Consensus 117 fPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~ 196 (1080)
.|++|||......---.++.+.+++...- ....+..+++.+.++-..|+.+-++ +|+++.....
T Consensus 2 ~~~FiKP~~~~K~F~g~V~~~~~dl~~~~--------~~~~~~~V~vSe~v~~~~E~R~fi~---~g~vv~~s~Y----- 65 (130)
T PF14243_consen 2 RPVFIKPPDDDKSFTGRVFRSGEDLIGFG--------SLDPDTPVLVSEVVEIESEWRCFIV---DGEVVTGSPY----- 65 (130)
T ss_pred CCeEeCCCCCCCcceeEEEcchhhccccC--------CCCCCceEEEeceEeeeeeEEEEEE---CCEEEEEeec-----
Confidence 48999999877665556777777654211 1123568999999997778888777 4577765222
Q ss_pred ccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEcCCCCEEEEEEecc
Q psy3968 197 RRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-GYSNAGTVEFLCDESGQFYFIEVNAR 256 (1080)
Q Consensus 197 ~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEfivd~dG~~~~iEvNpR 256 (1080)
+.. +....+. ++.+.+.+.+++. .....+.+|+-++.+|+++++|+|+=
T Consensus 66 ~~~-------~~~~~~~----~~~~~~~~~~~~~~~~p~~~vlDvg~~~~G~~~lVE~N~~ 115 (130)
T PF14243_consen 66 RGD-------WDLEPDP----DVVAFAIQALAAAWTLPPAYVLDVGVTDDGGWALVEANDG 115 (130)
T ss_pred CCC-------cccCCCH----HHHHHHHHHHHhcccCCCeEEEEEEEeCCCCEEEEEecCc
Confidence 111 1111222 4444445555433 33356779999998989999999994
No 269
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=94.37 E-value=0.079 Score=62.42 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=43.5
Q ss_pred hHHHHHHHHhcCCeEEE-EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1014 LILGMEAAGKAGGVVEA-AISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
...+++++|+.|..+.. +-+.| ..+.+|-+++++.+.+.||+.|++=| -|.++|.
T Consensus 119 ~~~~v~ya~~~g~~~~~~~Ed~~---------rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~ 175 (409)
T COG0119 119 AVDAVEYARDHGLEVRFSAEDAT---------RTDPEFLAEVVKAAIEAGADRINLPDTVGVATPN 175 (409)
T ss_pred HHHHHHHHHHcCCeEEEEeeccc---------cCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHH
Confidence 45677888899944443 22222 47899999999999999999999999 9999985
No 270
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.34 E-value=0.065 Score=60.53 Aligned_cols=65 Identities=29% Similarity=0.312 Sum_probs=51.8
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc--CCceeEecCCCeEEeEeeeeeeeecCceeE
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM--KMEMVVQAPVQGVVKSIDASMLLRGANAVG 978 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam--Km~~~i~a~~~G~v~~~~~~~~v~~g~~l~ 978 (1080)
....++||-+|.+ +.+++.||.|++||+|+.|=.. .-..+|+||.+|+|-.+...-.|..|+.|+
T Consensus 222 ~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~~~v~~G~~l~ 288 (288)
T cd06254 222 DVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTATLPVRKGDPLA 288 (288)
T ss_pred CCEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCCCccCCCCccC
Confidence 4456899988854 5778999999999999988221 446789999999998877777788888763
No 271
>PRK14847 hypothetical protein; Provisional
Probab=94.10 E-value=0.12 Score=58.99 Aligned_cols=74 Identities=9% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEE---EEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-C-----Cc
Q psy3968 994 SVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEA---AISYTGDVSDPSKKKYDLKYYQNLADELVKA-G-----TH 1064 (1080)
Q Consensus 994 a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-----~~ 1064 (1080)
...+|.+...|.+ .+..+++++|+.|..+.+ .++|+. -|- --.+++|-+++++...+. | ++
T Consensus 139 ~~kl~~s~~~vl~------~~~~~v~~Ak~~~~~~~g~~~~V~~~~--EDa--sRad~dfL~~~~~~a~~~~ga~r~~a~ 208 (333)
T PRK14847 139 RIVFGMSRAEIKE------IALAGTRQIRALADANPGTQWIYEYSP--ETF--SLAELDFAREVCDAVSAIWGPTPQRKM 208 (333)
T ss_pred HHHhCCCHHHHHH------HHHHHHHHHHHhccccCCCceEEEEee--ecC--CCCCHHHHHHHHHHHHHHhCCCccCCc
Confidence 3455676666654 678888999999663322 355553 222 247899999999987655 5 78
Q ss_pred EEEEec-CCccCCC
Q psy3968 1065 VLCIKV-RILLSPV 1077 (1080)
Q Consensus 1065 ~~~~kd-~~~~~p~ 1077 (1080)
.|+|=| -|.++|.
T Consensus 209 ~i~l~DTVG~~~P~ 222 (333)
T PRK14847 209 IINLPATVESSTAN 222 (333)
T ss_pred EEEeCCccccCCHH
Confidence 899999 9999993
No 272
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=93.86 E-value=0.13 Score=59.98 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=53.4
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc-cC---CceeEecCCCeEEeEeeeeeeeecCceeEEe
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA-MK---MEMVVQAPVQGVVKSIDASMLLRGANAVGYT 980 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea-mK---m~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~ 980 (1080)
...|.||-.|.+ +.+|+.||.|++||.|+.|=. .. -+.+|.||.+|+|..+...-.|..|+.|+.|
T Consensus 289 ~~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGGMV-VYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCeEE-EEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCCccccCCCeEEEe
Confidence 346899999955 577999999999999997733 32 2333699999999888888999999999876
No 273
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.79 E-value=0.056 Score=47.96 Aligned_cols=31 Identities=42% Similarity=0.652 Sum_probs=28.8
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~i 945 (1080)
..|.||..|+|.++++++||.|..||+|++|
T Consensus 44 ~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 44 MEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred eEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 3588999999999999999999999999986
No 274
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=92.27 E-value=0.17 Score=43.23 Aligned_cols=31 Identities=55% Similarity=0.776 Sum_probs=28.7
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~i 945 (1080)
..|.||..|.|.+++++.|+.|++|++|+.|
T Consensus 37 ~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 37 NEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 4689999999999999999999999999875
No 275
>KOG2156|consensus
Probab=92.22 E-value=0.57 Score=55.04 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHh-CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q psy3968 91 GVPIVPGTPGPITTTEEAMEFCLKY-GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIER 169 (1080)
Q Consensus 91 GIpvp~~~~~~v~s~ee~~~~~~~i-gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G 169 (1080)
.++.-|.++....+.+++++.+++. .--+||||..++-|.||++++...++-. +.+++||+||+.
T Consensus 279 ef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~pk--------------~rpLvvQ~yieR 344 (662)
T KOG2156|consen 279 EFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQFPK--------------DRPLVVQKYIER 344 (662)
T ss_pred ccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhCCC--------------cccHHHHHHhhc
Confidence 3454444446778889998888762 2238899999999999999998877532 457888999887
Q ss_pred C
Q psy3968 170 P 170 (1080)
Q Consensus 170 ~ 170 (1080)
+
T Consensus 345 P 345 (662)
T KOG2156|consen 345 P 345 (662)
T ss_pred c
Confidence 6
No 276
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=92.13 E-value=0.45 Score=56.42 Aligned_cols=135 Identities=18% Similarity=0.257 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCC------------------------------cccccHHHHHHHHHcCCcEeCCcHHHH
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYG------------------------------FLSERSDFAQAVLDAGIRFIGPSPYVV 74 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g------------------------------~lsE~~~~a~~l~~~gi~~iGps~eai 74 (1080)
.+.+.+.+.-.++++++++.-.. ...+...+.++..+..+.++| +-..
T Consensus 200 ~Ef~~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~av~~vg--sfrs 277 (445)
T PF14403_consen 200 SEFEVFQRLFEEHGYDCVICDPRDLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDGAVCMVG--SFRS 277 (445)
T ss_pred chHHHHHHHHHHcCCceEecChHHceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcCCeEEec--chhh
Confidence 34566677777778777765211 011334455566656666664 5567
Q ss_pred HHhcCHHHHHHHHHHCCCC------------CCCCCCCCCCC--------HHHHHHHHHHhCCcEEEEeCCCCCCcCeEE
Q psy3968 75 QQMGDKVAARQAAIDSGVP------------IVPGTPGPITT--------TEEAMEFCLKYGLPVIFKAAYGGGGRGMRV 134 (1080)
Q Consensus 75 ~~~~DK~~~r~~l~~~GIp------------vp~~~~~~v~s--------~ee~~~~~~~igfPvVVKP~~g~Gg~GV~i 134 (1080)
.+++||..+.=+.....-. ..|++ ..++. ..++.+++....--+|+||.++.||+||.+
T Consensus 278 ~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T-~~l~~~~~~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~ 356 (445)
T PF14403_consen 278 QLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWT-RLLTAGRTTYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYI 356 (445)
T ss_pred hhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCce-EEEcCccccccccchhHHHHHHhchhcEEeccccccCCCCeEE
Confidence 7888888776444332211 11221 22322 345566666666789999999999999986
Q ss_pred E--CCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC
Q psy3968 135 V--RKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERP 170 (1080)
Q Consensus 135 v--~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~ 170 (1080)
= .++++-+++++++. ++++++|||++-+
T Consensus 357 G~e~~~eeW~~~l~~a~--------~~~yilQe~v~~~ 386 (445)
T PF14403_consen 357 GWETSPEEWEAALEEAA--------REPYILQEYVRPP 386 (445)
T ss_pred CCcCCHHHHHHHHHHHh--------cCCcEEEEEecCC
Confidence 4 56777788777754 3589999999874
No 277
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.00 E-value=0.19 Score=49.62 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=29.9
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~i 945 (1080)
...|.||..|+|.+|+|++||.|+.||+|+.|
T Consensus 98 e~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 98 ENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred cEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 45799999999999999999999999999986
No 278
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=91.88 E-value=0.14 Score=58.87 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=30.7
Q ss_pred cccCCCC---eEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 916 QVGAPMP---GSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 916 ~v~aPm~---G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
.|.+|.. |+|.+++|++||.|++||+|+.|+.-
T Consensus 15 ~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 15 AVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred EecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCc
Confidence 4789999 99999999999999999999999963
No 279
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.74 E-value=0.11 Score=58.66 Aligned_cols=33 Identities=39% Similarity=0.484 Sum_probs=20.6
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
.|.++..|.|.+++|++||.|++||+|+.|+.-
T Consensus 3 ~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 3 IVQSLVGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EE--SS-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred EEeCCCCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 367788899999999999998888888887743
No 280
>PF13437 HlyD_3: HlyD family secretion protein
Probab=91.55 E-value=0.29 Score=46.17 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=30.3
Q ss_pred ccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
|+||+.|.|..+.+++|+.|.+|++|+.|..+
T Consensus 2 i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 78999999999999999999999999998875
No 281
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=91.27 E-value=0.28 Score=53.77 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=40.9
Q ss_pred ccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
+....+|..-+++|++||+|++||+|+.=- .--+.-..||.+|+|++|.-.
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~dK-~~p~v~ftsPvsG~V~~I~RG 82 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFEDK-KNPGVKFTSPVSGTVKAINRG 82 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEeeC-CCCCcEEecCCCeEEEEEecC
Confidence 445677888899999999999999998631 113556889999999998776
No 282
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.21 E-value=0.22 Score=50.93 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=30.7
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
...|.||..|+|++|+++.|+.|..||+|+.|+
T Consensus 123 ~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 457999999999999999999999999999885
No 283
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=91.06 E-value=0.23 Score=50.77 Aligned_cols=33 Identities=36% Similarity=0.579 Sum_probs=30.7
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
...|.||..|+|.+|+|+.||.|+.||+|+.|+
T Consensus 124 ~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 124 MNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 456999999999999999999999999999885
No 284
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.97 E-value=0.16 Score=60.25 Aligned_cols=40 Identities=38% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCcee
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMV 953 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~ 953 (1080)
...|.||.+|+|.+++|++||.|++||+|+.++.-.++.+
T Consensus 43 ~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~~~~ 82 (423)
T TIGR01843 43 VKVVQHLEGGIVREILVREGDRVKAGQVLVELDATDVEAD 82 (423)
T ss_pred eeecccCCCcEEEEEEeCCCCEecCCCeEEEEccchhhhH
Confidence 3458899999999999999999999999999998887644
No 285
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.83 E-value=0.2 Score=59.71 Aligned_cols=44 Identities=30% Similarity=0.407 Sum_probs=38.3
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEee
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSID 966 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~ 966 (1080)
.|.--+..|++||+|++||+|+.-... +...+.||++|+|++|.
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAIN 80 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEe
Confidence 366667899999999999999987665 68999999999999994
No 286
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.29 E-value=0.26 Score=58.85 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=31.3
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
.-.|.||.+|.|.+++|++||.|++||+|+.|+.
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred eeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 3478999999999999999999999999999874
No 287
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=90.11 E-value=0.35 Score=42.47 Aligned_cols=32 Identities=41% Similarity=0.575 Sum_probs=29.0
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~i 945 (1080)
...|.||..|+|++++++.|+.|..|+.|+.|
T Consensus 42 ~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 42 TSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 34689999999999999999999999999864
No 288
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=89.57 E-value=0.3 Score=58.38 Aligned_cols=43 Identities=33% Similarity=0.445 Sum_probs=36.6
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEee
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSID 966 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~ 966 (1080)
|.--+..|++||+|++||.|+.-.+. +...+.||.+|+|++|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 45557899999999999999955554 57999999999999995
No 289
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=89.46 E-value=0.74 Score=54.25 Aligned_cols=75 Identities=29% Similarity=0.276 Sum_probs=53.1
Q ss_pred EEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEE-------EecCCCeeecCCEE
Q psy3968 870 RLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEI-------RVKVGDKVEKGAAL 942 (1080)
Q Consensus 870 ~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~-------~v~~G~~V~~g~~~ 942 (1080)
+.+++.|....+ .+..+.. .+..+...|.+|.|--.|.|+++ .|++||.|++||+|
T Consensus 162 V~i~~~GT~l~I----~v~E~~~-------------p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvL 224 (385)
T PF06898_consen 162 VGIEIKGTRLII----EVVEKVD-------------PEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVL 224 (385)
T ss_pred EEEEEEeeEEEE----EEEEcCC-------------CCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEE
Confidence 457777777766 4433211 12334567899999999999999 69999999999999
Q ss_pred E--EEEccCCceeEecCCCeEEe
Q psy3968 943 V--VLSAMKMEMVVQAPVQGVVK 963 (1080)
Q Consensus 943 ~--~ieamKm~~~i~a~~~G~v~ 963 (1080)
+ .++....+.+++ .+|.|.
T Consensus 225 ISG~i~~~~~~~~v~--A~G~V~ 245 (385)
T PF06898_consen 225 ISGVIEIEGDEQEVH--ADGDVK 245 (385)
T ss_pred EeeeEcCCCCceEEC--CcEEEE
Confidence 8 677665555544 455554
No 290
>KOG2157|consensus
Probab=89.16 E-value=1.4 Score=52.87 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=40.5
Q ss_pred CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC
Q psy3968 116 GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERP 170 (1080)
Q Consensus 116 gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~ 170 (1080)
...+|+||...+-|+|++++++.+++.......... .....++.+.++.||+.|
T Consensus 199 ~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~-~s~~~~~~~vv~~yi~~p 252 (497)
T KOG2157|consen 199 RSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSF-ISENNDEGYVVSAYIDRP 252 (497)
T ss_pred cceEEeccccccccceeEEecchhhhhhhhhccccc-ccccccccceeeeeccCc
Confidence 468999999999999999999999998876532211 000114578899999876
No 291
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=88.90 E-value=0.46 Score=48.34 Aligned_cols=31 Identities=42% Similarity=0.649 Sum_probs=29.4
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~i 945 (1080)
..|.||..|+|.+++|++||.|+.||.|+.|
T Consensus 122 ~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 122 NEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred eEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 4699999999999999999999999999986
No 292
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=88.16 E-value=9.3 Score=43.40 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCC-------cCeEEECCHhHHHHHHHHHHHHH---HH---hcC---------CCcEEE
Q psy3968 106 EEAMEFCLKYGLPVIFKAAYGGGG-------RGMRVVRKMEDVEENFQRASSEA---KA---AFG---------NGAMFI 163 (1080)
Q Consensus 106 ee~~~~~~~igfPvVVKP~~g~Gg-------~GV~iv~s~eeL~~a~~~~~~~a---~~---~~g---------~~~vlV 163 (1080)
+++.++++++|--|+.|-...+-- -+.-.|++..|+--.+..--... .. ... .-.+++
T Consensus 75 ~~I~~aI~~lgg~VfpKlNwsaPkDa~wi~~~~sl~c~~~~dv~lLLksSd~i~~DL~~~~~~~~~~~~~~~~~~~~LvL 154 (299)
T PF07065_consen 75 QEIREAIEELGGSVFPKLNWSAPKDAAWINPNNSLKCTSPSDVYLLLKSSDRIAHDLDHAFDECEDEDSPDESIPYELVL 154 (299)
T ss_pred HHHHHHHHHcCCeEEEecCcCCccccchhccCCCceeCCHHHHHHHHHhChHHHHHHHhhhhhcccccCCCCCCceEEEE
Confidence 457778889998899998877622 23357888888765543221110 00 010 125777
Q ss_pred eeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCC-CCCCHHHHHHHHHHH-HHHHHHcCCcceEEEEEE
Q psy3968 164 EKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPA-PHLDINVRNKMTDLA-VKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 164 EeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa-~~l~~~~~~~l~~~a-~~i~~alg~~G~~~vEfi 241 (1080)
-+|..-....++.++.- +++++.+..|++.+. +. .....++++.|.+.. ..+...+.+.++. +|+.
T Consensus 155 rkw~~l~p~~EFRcFV~-~~~LiaISQr~~~~~----------~~L~~~~~~I~~~I~~F~~~~I~~~~~~~~~v-~DVy 222 (299)
T PF07065_consen 155 RKWVNLNPSMEFRCFVR-NRKLIAISQRDLNYY----------DFLEELKEEIRSKIQEFFEEHIKPKFPLDNYV-FDVY 222 (299)
T ss_pred eccccCCccceEEEEEE-CCEEEEEeccccccc----------HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCEE-EEEE
Confidence 88886555566666654 668888866654211 11 011223333444444 2344556666654 9999
Q ss_pred EcCC-CCEEEEEEeccCC
Q psy3968 242 CDES-GQFYFIEVNARLQ 258 (1080)
Q Consensus 242 vd~d-G~~~~iEvNpR~~ 258 (1080)
++.+ +++++||+||=-.
T Consensus 223 i~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 223 ITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred EcCCCCeEEEEEecCCcc
Confidence 9987 8899999999443
No 293
>PRK05849 hypothetical protein; Provisional
Probab=87.97 E-value=24 Score=45.32 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=101.0
Q ss_pred HhcCHHHHHHHHHH--CCCCCCCCCCCCC----CCHHHHHHHHHHh--CCcEEEEeCCCC------CCcCe--EEE--CC
Q psy3968 76 QMGDKVAARQAAID--SGVPIVPGTPGPI----TTTEEAMEFCLKY--GLPVIFKAAYGG------GGRGM--RVV--RK 137 (1080)
Q Consensus 76 ~~~DK~~~r~~l~~--~GIpvp~~~~~~v----~s~ee~~~~~~~i--gfPvVVKP~~g~------Gg~GV--~iv--~s 137 (1080)
.++.|...-..|+. .|.++|+.+.... .+.+.+.+.+... +-|++|+.+.-+ +.-|. .+. ..
T Consensus 7 ~~~~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~ 86 (783)
T PRK05849 7 FFQTKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRSEDSSSSSNAGAFLSILNVNA 86 (783)
T ss_pred ccchHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcccCCCcCccccCceeEecCCC
Confidence 45678888888888 8999999743222 2344444444432 469999977532 22333 222 22
Q ss_pred --HhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEE-Ee---cCCcEEEEEeeecccc--------cc-ccEE
Q psy3968 138 --MEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLL-GD---KAGNVVHLYERDCSVQ--------RR-HQKV 202 (1080)
Q Consensus 138 --~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl-~d---~~G~vv~l~~r~~~~~--------~~-~~~~ 202 (1080)
.++|..++..+++.... ..+..|+||+.+.+. ..+=.++ .| +....+. +....-+ +. ....
T Consensus 87 ~~~~~L~~AI~~V~aS~~~-~~~~aVlVQ~MV~~~-~~SGV~FTrdP~tg~~~~~i--ey~~~G~ge~VVsG~~t~~~~~ 162 (783)
T PRK05849 87 DSKDQLLKAIEKVIASYGT-SKDDEILVQPMLEDI-VLSGVAMSRDPESGAPYYVI--NYDESGSTDSVTSGSGGSATTV 162 (783)
T ss_pred CcHHHHHHHHHHHHHhhCC-CCCCeEEEEeCccCC-CceEEEEECCCCCCCCceEE--EEcCCCCCcceecccCCCCcee
Confidence 34899999888764211 234579999999752 1122222 11 1111111 1111000 00 1111
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEec
Q psy3968 203 VEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNA 255 (1080)
Q Consensus 203 ~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNp 255 (1080)
........++++...++.+.+.++-+.+|.. +..|||-+|++|++|++-+=|
T Consensus 163 ~~~~~~~~l~p~~~~~L~~la~~LE~~fg~d-pqDIEfaid~~g~L~lLQ~RP 214 (783)
T PRK05849 163 YHYRDALVFKPPRLKKLIELIRELEALFGCD-FLDIEFAIDEKEELYILQVRP 214 (783)
T ss_pred eeccccccCCHHHHHHHHHHHHHHHHHcCCC-CeeeEEEEccCCEEEEEEccC
Confidence 1111122467788889999999988887754 678999998889999988644
No 294
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=87.81 E-value=0.54 Score=51.32 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.7
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
...|.||..|+|.+|++++||.|..||+|++||
T Consensus 241 eieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 241 MNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 347999999999999999999999999999986
No 295
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=87.56 E-value=1.6 Score=51.40 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=42.4
Q ss_pred EEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEE-------EecCCCeeecCCEE
Q psy3968 870 RLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEI-------RVKVGDKVEKGAAL 942 (1080)
Q Consensus 870 ~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~-------~v~~G~~V~~g~~~ 942 (1080)
+.+++.|.+..+ .+..+.. +.+......|.+|.|-..|+|.++ .|++||.|++||.|
T Consensus 158 V~v~i~GTrl~i----~v~Ek~~------------~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvL 221 (382)
T TIGR02876 158 AGVRVRGTTLVI----KVVEKQE------------PKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLL 221 (382)
T ss_pred EEEEEEeEEEEE----EEEecCC------------CCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEE
Confidence 457777777766 4433211 111123456889999999999999 69999999999999
Q ss_pred EE
Q psy3968 943 VV 944 (1080)
Q Consensus 943 ~~ 944 (1080)
+.
T Consensus 222 Is 223 (382)
T TIGR02876 222 IS 223 (382)
T ss_pred EE
Confidence 83
No 296
>KOG0559|consensus
Probab=87.49 E-value=0.45 Score=53.40 Aligned_cols=33 Identities=36% Similarity=0.530 Sum_probs=30.8
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
-.|.||-.|+|.+++|++||+|+.||.|+.|+.
T Consensus 116 v~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 116 VEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred eeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 358899999999999999999999999999986
No 297
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=86.64 E-value=0.71 Score=53.49 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.4
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK 949 (1080)
..|.||..|+|.+++|++||.|+.||+|+.++.++
T Consensus 46 ~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46899999999999999999999999999998754
No 298
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.60 E-value=0.58 Score=56.52 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=31.9
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCc
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKME 951 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~ 951 (1080)
.|.++..|.|.+++|++||.|++||+|+.|+.--..
T Consensus 61 ~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~~ 96 (457)
T TIGR01000 61 KIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGNEE 96 (457)
T ss_pred EEEcCCCcEEEEEEcCCCCEecCCCEEEEECchHHH
Confidence 578899999999999999999999999999765444
No 299
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=86.57 E-value=1.2 Score=52.92 Aligned_cols=41 Identities=39% Similarity=0.515 Sum_probs=37.1
Q ss_pred EEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 926 MEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 926 ~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
....|++||+|.+||+|..=|- -+..+.||.+|+|++|.-.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~ 85 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPA 85 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeec
Confidence 3578999999999999998888 8899999999999999844
No 300
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=86.25 E-value=13 Score=43.08 Aligned_cols=183 Identities=16% Similarity=0.068 Sum_probs=97.5
Q ss_pred CC-Ceeeecc-ccCccChHHHHHHHHHHHHHCCCCceEE-------eeCCCCchhHHHHHHHH-HcCCCEEeeccCCCC-
Q psy3968 462 LG-KLINTFD-MAGLLKPRAAKLLIGAIREKHPDIPIHI-------HTHDTSGAGVASMIACA-EAGADVVDVAVDSMS- 530 (1080)
Q Consensus 462 ~G-~~i~i~D-t~G~~~P~~~~~lv~~l~~~~p~~~i~~-------H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~glg- 530 (1080)
.| .+|+|.+ ..-......+.++++.+++..|++.+.. |.|.+.|+-....+..+ +||++.+..+..-+.
T Consensus 85 ~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~ 164 (343)
T TIGR03551 85 AGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILD 164 (343)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcC
Confidence 46 6788872 1113466778999999999876555432 34678888777776666 689999873221121
Q ss_pred ------CCCCCCcHHHHH---HHHhcCCCCC------CC--CHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccC
Q psy3968 531 ------GMTSQPSMGAVV---ASLQGSDIDT------GL--DLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNE 593 (1080)
Q Consensus 531 ------~~~g~~~~e~~v---~~l~~~g~~~------~~--d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 593 (1080)
-+++..+.++.+ ..++..|+.+ |+ ..+...+...+++++...+..|... .-+-++
T Consensus 165 ~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~~~~~~--------iP~~f~ 236 (343)
T TIGR03551 165 DEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEF--------VPLPFV 236 (343)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhhHHhCCeeEE--------Eecccc
Confidence 144444554444 4445666664 22 3444444555555554433322110 001112
Q ss_pred CCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCc-cccCCCchhhHH---hhHHHH-hhcccH
Q psy3968 594 IPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDI-IKVTPSSKVVGD---FAQFMV-QNKLTS 656 (1080)
Q Consensus 594 iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~-~~VTP~Sqivg~---qA~~~v-~n~l~~ 656 (1080)
.||. .|..+ ...--.-...+.++.++-.|-.|..- +.+.-+....|. |..|+. .|.+.|
T Consensus 237 ~~gT---~l~~~-~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g 300 (343)
T TIGR03551 237 HYNA---PLYLK-GMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGG 300 (343)
T ss_pred CCCC---ccccc-cCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCc
Confidence 2342 22110 00000124788999999999999763 344444345553 333333 466555
No 301
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=86.11 E-value=0.85 Score=45.97 Aligned_cols=47 Identities=32% Similarity=0.474 Sum_probs=35.0
Q ss_pred CCCeEEEEEEecCCCeeecCCEEEEEEccCCce-eEecCCCeEEeEee
Q psy3968 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEM-VVQAPVQGVVKSID 966 (1080)
Q Consensus 920 Pm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~-~i~a~~~G~v~~~~ 966 (1080)
|..|..+-..+.+|++|++||.++.+-+=|=|. .++||++|+|.-+.
T Consensus 86 ~veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 86 PVEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EEESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred EecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 455778888999999999999999999999875 59999999986553
No 302
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=85.96 E-value=1.1 Score=50.44 Aligned_cols=41 Identities=37% Similarity=0.532 Sum_probs=33.6
Q ss_pred EEEEecCCCeeecCCEEEEEEccC-CceeEecCCCeEEeEeeee
Q psy3968 926 MEIRVKVGDKVEKGAALVVLSAMK-MEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 926 ~~~~v~~G~~V~~g~~~~~ieamK-m~~~i~a~~~G~v~~~~~~ 968 (1080)
-.+.|++||.|++||+|++ --| --.-+.||.+|+|+.|+-.
T Consensus 41 p~mkV~~gD~VkkGq~LfE--dKknpgv~~Tap~sG~V~aI~RG 82 (447)
T COG1726 41 PSMKVREGDAVKKGQVLFE--DKKNPGVVFTAPVSGKVTAIHRG 82 (447)
T ss_pred CcceeccCCeeeccceeee--cccCCCeEEeccCCceEEEeecc
Confidence 4578999999999999985 333 3455899999999999877
No 303
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=85.89 E-value=0.79 Score=54.71 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=31.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|.||..|+|.+|++++||.|+.||+|+.||.
T Consensus 134 ~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~ 167 (463)
T PLN02226 134 TIDIASPASGVIQEFLVKEGDTVEPGTKVAIISK 167 (463)
T ss_pred eeEEecCCCeEEEEEEeCCCCEecCCCEEEEecc
Confidence 3568999999999999999999999999999975
No 304
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=85.74 E-value=1.5 Score=49.63 Aligned_cols=51 Identities=25% Similarity=0.298 Sum_probs=40.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC--CceeEecCCCeEEeEe
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK--MEMVVQAPVQGVVKSI 965 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK--m~~~i~a~~~G~v~~~ 965 (1080)
...|.||-+|.+ +..++.||.|++||.|+.|-..= -..+++||.+|+|-.+
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 446899998854 57799999999999999884432 1356899999999766
No 305
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=85.27 E-value=1.1 Score=45.44 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=18.6
Q ss_pred EEEecCCCeeecCCEEEEEEccCC
Q psy3968 927 EIRVKVGDKVEKGAALVVLSAMKM 950 (1080)
Q Consensus 927 ~~~v~~G~~V~~g~~~~~ieamKm 950 (1080)
+.+|++||+|++||+|+...-.+.
T Consensus 90 ~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 90 ESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred EEEeeCCCEEccCCEEEEECHHHH
Confidence 337999999999999988765543
No 306
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=85.07 E-value=0.71 Score=55.30 Aligned_cols=44 Identities=36% Similarity=0.499 Sum_probs=36.5
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeee
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDA 967 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~ 967 (1080)
|.--+..|++||+|++||.|+.-+. .....+.||++|+|++|.-
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~~ 83 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIEE 83 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEecc
Confidence 3334678999999999999998833 2588999999999999863
No 307
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=83.94 E-value=1.6 Score=42.69 Aligned_cols=14 Identities=43% Similarity=0.729 Sum_probs=9.0
Q ss_pred CcccCCCCeEEEEE
Q psy3968 915 GQVGAPMPGSVMEI 928 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~ 928 (1080)
+.|.||..|+|..+
T Consensus 36 ~~v~AP~~G~v~~v 49 (121)
T TIGR00830 36 GKVVAPVDGKIGKI 49 (121)
T ss_pred CeEEccCCeEEEEE
Confidence 55667777766655
No 308
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=83.19 E-value=1.2 Score=52.66 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=31.3
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
..|.||..|+|.+++|++||.|+.||+|++|+.-
T Consensus 88 ~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 88 VDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred EEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 4688999999999999999999999999999764
No 309
>KOG2799|consensus
Probab=83.14 E-value=4.5 Score=45.90 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=57.5
Q ss_pred cCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEeCCCCCCc-----------CeEEECCHhHHHHHH
Q psy3968 78 GDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGL-PVIFKAAYGGGGR-----------GMRVVRKMEDVEENF 145 (1080)
Q Consensus 78 ~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igf-PvVVKP~~g~Gg~-----------GV~iv~s~eeL~~a~ 145 (1080)
-.-+...+++++.|+.+|++ .+..|+||+.+.+++++- -+|||+-.-+||| ||++|.+++|.++..
T Consensus 25 ~hey~~~~ll~~~Gv~vp~g--~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va 102 (434)
T KOG2799|consen 25 IHEYRSAALLRKYGINVPLG--YVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVA 102 (434)
T ss_pred HHHHHHHHHHHHcCCCCCCC--cccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHH
Confidence 34456688999999999999 478999999999999863 6999998877665 589999999988776
Q ss_pred HHHH
Q psy3968 146 QRAS 149 (1080)
Q Consensus 146 ~~~~ 149 (1080)
.+..
T Consensus 103 ~qmi 106 (434)
T KOG2799|consen 103 SQMI 106 (434)
T ss_pred HHhh
Confidence 6554
No 310
>KOG3373|consensus
Probab=83.04 E-value=0.76 Score=46.14 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=47.5
Q ss_pred eEEEEE-EecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee---------eeeecCceeEEecCCc
Q psy3968 923 GSVMEI-RVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS---------MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 923 G~v~~~-~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~---------~~v~~g~~l~~~~~~~ 984 (1080)
|.||=+ +=+.|-+|.+|+.+..+|+-|.-.+|.+|++|+|++|..+ ..-..+.=|+.+...+
T Consensus 80 Gdvv~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e~GWl~k~kls~ 151 (172)
T KOG3373|consen 80 GDVVYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEEDGWLIKMKLSS 151 (172)
T ss_pred CceEEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCcccCceEEEEEeCC
Confidence 444333 3468999999999999999999999999999999999877 3334455666665433
No 311
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=82.34 E-value=5 Score=47.89 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=47.7
Q ss_pred EEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 924 SVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 924 ~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
.|.-..|+.|+--..=+....+++ .=+..|.++.+|+|.+++++ +.|+.||+|+.|...+
T Consensus 61 ~V~v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 61 PVQAATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred ceEEEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 344456667775555566778888 46788999999999999999 9999999999997543
No 312
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=82.27 E-value=1.1 Score=56.59 Aligned_cols=44 Identities=41% Similarity=0.570 Sum_probs=35.7
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeee
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDA 967 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~ 967 (1080)
|.--+..|++||+|.+||+|..-... +...|+||.+|+|+.|.-
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~~-~s~~vhApvSG~V~~I~~ 89 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDGR-MSLPVHAPTSGTVVAIEP 89 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCCC-ceeEEeCCCCeEEeeecc
Confidence 34456799999999999999955332 568999999999999863
No 313
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=80.88 E-value=2.7 Score=47.41 Aligned_cols=67 Identities=34% Similarity=0.442 Sum_probs=54.2
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEE--EEE-EccCCc-eeEecCCCeEEeEeeeeeeeecCceeEEe
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAAL--VVL-SAMKME-MVVQAPVQGVVKSIDASMLLRGANAVGYT 980 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~--~~i-eamKm~-~~i~a~~~G~v~~~~~~~~v~~g~~l~~~ 980 (1080)
....+.||..|.+ ...++.||.|++||++ ..+ ...--+ .++.||.+|+|..+...-.|..|+.|+.+
T Consensus 219 ~~~~~~a~~~G~~-~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~~~~~v~~G~~l~~v 289 (292)
T PF04952_consen 219 DPEWVRAPAGGLF-EPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIRESPYVEQGDALAKV 289 (292)
T ss_dssp GCCEEESSSSEEE-EETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESECTSSECTTTEEEEEE
T ss_pred cceeecCCccEEE-EEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeCcccccCCCCeEEEE
Confidence 3456889999955 7889999999999999 544 333333 58999999999887777999999999876
No 314
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=80.32 E-value=1.5 Score=43.49 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=8.1
Q ss_pred CcccCCCCeEEEEE
Q psy3968 915 GQVGAPMPGSVMEI 928 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~ 928 (1080)
+.|.||..|+|..+
T Consensus 40 ~~v~AP~~G~v~~i 53 (132)
T PF00358_consen 40 GKVYAPVDGTVTMI 53 (132)
T ss_dssp SEEEESSSEEEEEE
T ss_pred CeEEEEeeEEEEEE
Confidence 35666666666554
No 315
>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []. Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.
Probab=80.19 E-value=1.3 Score=42.81 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=48.4
Q ss_pred ccceEEEccCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHH-cCCcEeCCcHHHHHHhcCHHHH
Q psy3968 7 KADESYLVGKGLPPVEAYLNI--PEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLD-AGIRFIGPSPYVVQQMGDKVAA 83 (1080)
Q Consensus 7 ~ADea~~v~~~~~~~~~yld~--e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~-~gi~~iGps~eai~~~~DK~~~ 83 (1080)
++|+.+.+ ++|.|+ +.+.+-.++. ++|+.-+|.+.++... +.++. ..+|++|+. ..++...|...-
T Consensus 40 ~iDe~i~~-------d~f~di~~~~~q~~L~~~--N~I~VPhgSfv~Y~G~-d~ie~~~~vP~FGNR-~lLrwEseR~~~ 108 (124)
T PF06849_consen 40 FIDEVIVL-------DSFSDILSEEVQEKLREM--NAIFVPHGSFVAYVGY-DRIENEFKVPIFGNR-NLLRWESERDKE 108 (124)
T ss_dssp T-SEEEEE-------SSCGHCCSHHHHHHHHHT--TEEE--BTTHHHHH-H-HHHHHT-SS-EES-C-CGGHCCCSHHHH
T ss_pred cCcEEEEe-------CCHHHHHhHHHHHHHHHC--CeEEecCCCeeEeecH-HHHhhcCCCCeecCh-HHHHhhhhhhhH
Confidence 68999998 244332 3455555443 4677667766655553 44555 899999874 566666699999
Q ss_pred HHHHHHCCCCCCCC
Q psy3968 84 RQAAIDSGVPIVPG 97 (1080)
Q Consensus 84 r~~l~~~GIpvp~~ 97 (1080)
+++|+++|||.|+.
T Consensus 109 ~~lL~~AgI~~P~~ 122 (124)
T PF06849_consen 109 RNLLEKAGIPMPRK 122 (124)
T ss_dssp HHHHHHTT-BB--B
T ss_pred HHHHHHcCCCCCcc
Confidence 99999999999974
No 316
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=80.19 E-value=2.4 Score=43.95 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=7.8
Q ss_pred CcccCCCCeEEEEE
Q psy3968 915 GQVGAPMPGSVMEI 928 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~ 928 (1080)
+.|.||..|+|..+
T Consensus 58 ~~v~AP~dG~V~~v 71 (169)
T PRK09439 58 NKMVAPVDGTIGKI 71 (169)
T ss_pred CEEEecCCeEEEEE
Confidence 45555666655544
No 317
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=79.98 E-value=3.6 Score=50.92 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=50.9
Q ss_pred HHcCCChhhhccccCCccChHHHHHHHHhcCCeEEE------EEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCC-----
Q psy3968 995 VQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEA------AISYTGDVSDPSKKKYDLKYYQNLADELVKAGT----- 1063 (1080)
Q Consensus 995 ~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----- 1063 (1080)
+.+|.+...+++ .+..+++.+|+.|.+... .+.|+.- |- ---+.+|-+++++...++|+
T Consensus 134 ~~l~~s~ee~l~------~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~E--d~--~r~d~~~l~~~~~~a~~ag~~~~~~ 203 (564)
T TIGR00970 134 VVFRASRAEVQA------IATDGTKLVRKCTKQAAKYPGTQWRFEYSPE--SF--SDTELEFAKEVCEAVKEVWAPTPER 203 (564)
T ss_pred HHhCCCHHHHHH------HHHHHHHHHHHhcccccccccceEEEEEecc--cC--CCCCHHHHHHHHHHHHHhCCCccCC
Confidence 345666666543 456677888888875543 2445541 11 12478999999999999987
Q ss_pred -cEEEEec-CCccCCC
Q psy3968 1064 -HVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1064 -~~~~~kd-~~~~~p~ 1077 (1080)
+.|+|=| -|..+|.
T Consensus 204 ~~~i~l~DTvG~a~P~ 219 (564)
T TIGR00970 204 PIIFNLPATVEMTTPN 219 (564)
T ss_pred eeEEEeccccCccCHH
Confidence 4899999 8998885
No 318
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=79.37 E-value=2.6 Score=48.42 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.7
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
...|+||+.|+|..+.+++|+.|..|++|+.|...
T Consensus 204 ~~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 238 (334)
T TIGR00998 204 RTVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPA 238 (334)
T ss_pred CcEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcC
Confidence 45799999999999999999999999999987654
No 319
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=78.40 E-value=29 Score=41.65 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=54.4
Q ss_pred CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC---EEeeccCCCCCCCCCCcHHH
Q psy3968 464 KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD---VVDVAVDSMSGMTSQPSMGA 540 (1080)
Q Consensus 464 ~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~---~vd~s~~glg~~~g~~~~e~ 540 (1080)
+.|+|....| .|+++..+|+.+++.. ++||.+-+ .-.....+|+++|++ .|.+.- .-..+.
T Consensus 129 D~IaL~~~s~--dp~~v~~~Vk~V~~~~-dvPLSIDT-----~dpevleaAleagad~~plI~Sat--------~dN~~~ 192 (450)
T PRK04165 129 DMVALRNASG--DPEKFAKAVKKVAETT-DLPLILCS-----EDPAVLKAALEVVADRKPLLYAAT--------KENYEE 192 (450)
T ss_pred CEEEEeCCCC--CHHHHHHHHHHHHHhc-CCCEEEeC-----CCHHHHHHHHHhcCCCCceEEecC--------cchHHH
Confidence 5888988888 8999999999999877 89999987 446778889999998 444322 124566
Q ss_pred HHHHHhcCCCCC
Q psy3968 541 VVASLQGSDIDT 552 (1080)
Q Consensus 541 ~v~~l~~~g~~~ 552 (1080)
+......+|...
T Consensus 193 m~~la~~yg~pv 204 (450)
T PRK04165 193 MAELAKEYNCPL 204 (450)
T ss_pred HHHHHHHcCCcE
Confidence 766666555443
No 320
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=78.37 E-value=2.4 Score=49.21 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=32.3
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK 949 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK 949 (1080)
...|+||+.|+|.++.+++|+.|..|++|+.|-.+.
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 467999999999999999999999999999886553
No 321
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=77.80 E-value=1.5 Score=48.61 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=32.7
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEc---cCCceeEec
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA---MKMEMVVQA 956 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea---mKm~~~i~a 956 (1080)
.|+||+.|.|..+.+++|+.|..|++|+.|-. |+.+..|+.
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~~~~i~~~v~~ 133 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVADLGAVWVEAEVPA 133 (265)
T ss_pred EEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCCcEEEEEEECH
Confidence 37999999999999999999999999997643 334444443
No 322
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=77.11 E-value=15 Score=44.63 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=50.1
Q ss_pred eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCC
Q psy3968 465 LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGM 532 (1080)
Q Consensus 465 ~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~ 532 (1080)
.|+| |++- ..|..+.++|+++|+.+|++|+-. ..++....+..++++|||.|++.++|=..|
T Consensus 240 ~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ 301 (475)
T TIGR01303 240 VLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGPGAMC 301 (475)
T ss_pred EEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcCCccc
Confidence 4444 7766 778999999999999999999887 557778889999999999999876544333
No 323
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=76.87 E-value=2.2 Score=57.38 Aligned_cols=65 Identities=32% Similarity=0.477 Sum_probs=58.0
Q ss_pred CCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEE------ccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 911 KSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS------AMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 911 ~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie------amKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+.+...|.|||+|+|++|+|++||.|++||+|++|| . |.||.+|+|++++++ +.|..|++|++|+
T Consensus 1129 ~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~------v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1129 PEGAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMP------VSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCCcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecCeeEE------EEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 456678999999999999999999999999999832 2 359999999999999 9999999999874
No 324
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=76.84 E-value=7.8 Score=45.17 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=57.8
Q ss_pred CCC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHH
Q psy3968 461 PLG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMG 539 (1080)
Q Consensus 461 ~~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e 539 (1080)
..| +.|+=+=.-++-+|++..++|..||+..|+.||++-.=...+....... +.++|+|.| ++.|.+|+||..+..
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~I--tIDG~~GGTGAap~~ 246 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFI--TIDGAEGGTGAAPLT 246 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEE--EEE-TT---SSEECC
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEE--EEeCCCCCCCCCchh
Confidence 366 5666555566789999999999999999999999988766666554443 889999997 577888999887643
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHH
Q psy3968 540 AVVASLQGSDIDTGLDLKDISAYSAYWE 567 (1080)
Q Consensus 540 ~~v~~l~~~g~~~~~d~~~l~~~~~~~~ 567 (1080)
. .+..|..+ ...|.++.+++.
T Consensus 247 ~----~d~~GlP~---~~~l~~a~~~L~ 267 (368)
T PF01645_consen 247 S----MDHVGLPT---EYALARAHQALV 267 (368)
T ss_dssp H----HHHC---H---HHHHHHHHHHHH
T ss_pred H----HhhCCCcH---HHHHHHHHHHHH
Confidence 2 23344433 334555555554
No 325
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=76.53 E-value=3.5 Score=47.10 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=29.9
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
...|+||+.|+|.++.+++|+.|..|++++.|-
T Consensus 154 ~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 154 RTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred CCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 467999999999999999999999999998553
No 326
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=76.47 E-value=1.8e+02 Score=34.98 Aligned_cols=187 Identities=17% Similarity=0.126 Sum_probs=104.0
Q ss_pred ccChHHHHHHHHHHHHHCCCCc--------eEEeeCCCCchh----HHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHH
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIP--------IHIHTHDTSGAG----VASMIACAEAGADVVDVAVDSMSGMTSQPSMGAV 541 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~--------i~~H~H~t~Gla----~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~ 541 (1080)
.++|+++..+.+++++....++ .-+-.|.|-|-+ ++.+.-+..+|+.+.=.+-.|+|...| +.++
T Consensus 50 G~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~niS~~~a~ivAa~Gv~VaKhg~R~lss~~G---TaD~ 126 (440)
T PRK05820 50 GMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGDKISLMLAPMVAACGGYVPMISGRGLGHTGG---TLDK 126 (440)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCccHHHHHHHHHHhCCCCEEeeCCCCCCCccc---HHHH
Confidence 3789999999999987642221 135677777644 344555567999999888888877766 3333
Q ss_pred HHHHhcC-CCCCCCCHHHHHHHH------------------HHHHHHHhccCCCCccC--------CCCcCCcceeccCC
Q psy3968 542 VASLQGS-DIDTGLDLKDISAYS------------------AYWEQTRQLYAPFECTT--------TMKSGNADVYLNEI 594 (1080)
Q Consensus 542 v~~l~~~-g~~~~~d~~~l~~~~------------------~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~i 594 (1080)
|+.. |+.+.++.+.+.+.- +++..+|+....-++.+ .-...+...+.-.+
T Consensus 127 ---LE~LpG~~v~ls~e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~aSImSKK~A~G~~~lvlDV 203 (440)
T PRK05820 127 ---LEAIPGYRAFPSNDRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITASILSKKLAEGLDALVLDV 203 (440)
T ss_pred ---HHhCCCCCCCCCHHHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcCCCeEEEEc
Confidence 3444 555556555444322 12222222222111100 00001222223333
Q ss_pred CCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccc--cCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHH
Q psy3968 595 PGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIK--VTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSV 672 (1080)
Q Consensus 595 PGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~--VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~ 672 (1080)
|=|.=..+. -.+.-.+.-+.+-++-+.+|-... +|-.+|-+|.-. -|.| | . .|.
T Consensus 204 k~G~gAfmk-------t~~~A~~La~~mv~ig~~~g~~~~a~lTdm~qPlG~~i----Gnal--E-v----------~Ea 259 (440)
T PRK05820 204 KVGSGAFMK-------TYEEARELARSMVEVANGAGVRTTALLTDMNQPLASSA----GNAL--E-V----------REA 259 (440)
T ss_pred CCCCCCCCC-------CHHHHHHHHHHHHHHHHHcCCeEEEEEccCCCcccCcc----chHH--H-H----------HHH
Confidence 333211110 012234455677788889999887 899999999765 2332 1 1 367
Q ss_pred HHhhccccCCCCCCCChhHHhhhh
Q psy3968 673 VEFLQGAIGTPYQGFPEPLRSKVL 696 (1080)
Q Consensus 673 ~~~~~G~~G~~~~~~~~~~~~~~l 696 (1080)
++.++|..| |+++.++++
T Consensus 260 i~~L~g~~g------p~dl~e~~~ 277 (440)
T PRK05820 260 VEFLTGGYR------PPRLVEVTM 277 (440)
T ss_pred HHHHCCCCC------ChhHHHHHH
Confidence 899998744 567776665
No 327
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=76.41 E-value=2.6 Score=49.85 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|+||+.|+|..+.+++|+.|..|++|+.|-.
T Consensus 215 ~t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~ 248 (390)
T PRK15136 215 RTKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVP 248 (390)
T ss_pred CCEEECCCCeEEEEEecCCCCEeCCCCeEEEEEe
Confidence 3579999999999999999999999999997743
No 328
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=76.00 E-value=2.7 Score=48.64 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=27.3
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
.|.+-.+|.|++|+|+.+|.|++||+|+.|+
T Consensus 55 ~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD 85 (352)
T COG1566 55 PIAPQVSGRVTEVNVKDNQLVKKGDVLFRID 85 (352)
T ss_pred EEcCcCceEEEEEEecCCCEecCCCeEEEEC
Confidence 4667788999999999999999999999885
No 329
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=75.62 E-value=2 Score=50.91 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=36.2
Q ss_pred EEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 941 ALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 941 ~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
....+++. -+.+|.+..+|+|.++.++ +.|+.|++|+.|+..+
T Consensus 56 ~~G~v~a~-~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 56 LPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred EEEEEEEE-EEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 44566774 3788999999999999999 9999999999997543
No 330
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=75.60 E-value=3 Score=38.65 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=12.0
Q ss_pred CcccCCCCeEEEEEEe
Q psy3968 915 GQVGAPMPGSVMEIRV 930 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v 930 (1080)
..|.||+.|+|+.+--
T Consensus 14 ~~V~A~~~G~V~~~~~ 29 (96)
T PF01551_consen 14 TPVYAPADGKVVFVGE 29 (96)
T ss_dssp -EEEESSSEEEEEEEE
T ss_pred CEEEeCccEEEEEEEe
Confidence 4689999999987743
No 331
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=74.98 E-value=3.3 Score=49.13 Aligned_cols=36 Identities=31% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK 949 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK 949 (1080)
...|.||-.|+|.+++|++||.|+.|++|+.||...
T Consensus 45 ~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 45 VLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 356889999999999999999999999999998654
No 332
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=74.83 E-value=2.9 Score=49.27 Aligned_cols=58 Identities=7% Similarity=-0.028 Sum_probs=46.1
Q ss_pred EEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 925 VMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 925 v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
|.-..|+.|+-...-+....+++-+ +..|.++.+|+|.++.+. +.|++||+|+.|+.+
T Consensus 36 V~v~~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 36 VGVVTLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred eEEEEeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 3334566666555556677787765 678999999999999999 999999999999754
No 333
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=74.56 E-value=3.3 Score=48.82 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=42.9
Q ss_pred EEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 928 IRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 928 ~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
..|+.++--..-.....+++. -+..|.++.+|+|.++.++ +.|+.||+|+.|+..
T Consensus 41 ~~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 41 VTVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 355555544444455677775 5779999999999999999 999999999999643
No 334
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=73.81 E-value=4.2 Score=46.19 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
...|+||+.|.|..+.+++|+.|++|++|+.|..+
T Consensus 134 ~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 134 YTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred cCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcC
Confidence 35699999999999999999999999999988754
No 335
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=73.80 E-value=3.7 Score=48.65 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=32.1
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
..+|.||..|+|.++++++|+.|+.|++|+.||..
T Consensus 43 ~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 43 VLEVPSPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 35688999999999999999999999999999865
No 336
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=73.58 E-value=6.7 Score=40.65 Aligned_cols=49 Identities=27% Similarity=0.408 Sum_probs=36.9
Q ss_pred CcccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEeee
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSIDA 967 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~~~ 967 (1080)
-.|.||+.|+++.+. ++-|.|=+ |+-+++.=+ +..|.||++|+|+.+.-
T Consensus 21 ~~i~aP~~G~vi~L~-~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~ 73 (169)
T PRK09439 21 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFE 73 (169)
T ss_pred eEEEecCCeEEEEhH-HCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcC
Confidence 458999999998873 33444433 888887664 58999999999998763
No 337
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=73.33 E-value=4.2 Score=34.34 Aligned_cols=31 Identities=35% Similarity=0.551 Sum_probs=28.1
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~i 945 (1080)
..+.||..|++.++++++|+.|..|++|+.|
T Consensus 44 ~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4588999999999999999999999999864
No 338
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=73.27 E-value=43 Score=37.51 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=104.1
Q ss_pred eEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecC
Q psy3968 332 GIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411 (1080)
Q Consensus 332 gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~ 411 (1080)
++.+.. ....|..+.++ ..+..+-+...+.-.+.+-+...|.. ..|+.|+-..+.+.++.+. +.+.++
T Consensus 56 ~~~v~~-~~~dG~~v~~g--~~i~~i~G~~~~l~~~Er~~ln~L~~--~sgIAT~t~~~v~~a~~~~-------~~i~~T 123 (269)
T cd01568 56 GIEVEW-LVKDGDRVEAG--QVLLEVEGPARSLLTAERVALNLLQR--LSGIATATRRYVEAARGTK-------ARIADT 123 (269)
T ss_pred CeEEEE-EeCCCCEecCC--CEEEEEEEcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCC-------EEEeec
Confidence 444543 35788888877 67888877666666667777666665 4588888888777776532 223332
Q ss_pred CccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccccCccChHHHHHHHHHHHHHC
Q psy3968 412 NPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRAAKLLIGAIREKH 491 (1080)
Q Consensus 412 ~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~G~~~P~~~~~lv~~l~~~~ 491 (1080)
+....-.+.+..|...+- | +-.+ ++-..+.|-|+|.= +..-......++.+|+..
T Consensus 124 -------RKt~Pg~r~~~k~Av~~G--G--g~~h-------------R~~L~d~ilikdnH-i~~~g~~~~~v~~~r~~~ 178 (269)
T cd01568 124 -------RKTTPGLRLLEKYAVRAG--G--GDNH-------------RLGLSDAVLIKDNH-IAAAGGITEAVKRARAAA 178 (269)
T ss_pred -------CCCChhhHHHHHHHHHhC--C--Cccc-------------cCCCcceeeecHhH-HHHhCCHHHHHHHHHHhC
Confidence 111112334445533321 1 1111 11112456666541 000012335678889888
Q ss_pred C-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcC-C----CCCCCCHHHHHHHHH
Q psy3968 492 P-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGS-D----IDTGLDLKDISAYSA 564 (1080)
Q Consensus 492 p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~-g----~~~~~d~~~l~~~~~ 564 (1080)
| +..|++-+|+ ......|+++|+|+|-.-- + +.-.+..++..++.. . ..-||+.+.+.++.+
T Consensus 179 ~~~~~I~vev~t-----~eea~~A~~~gaD~I~ld~--~----~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~ 246 (269)
T cd01568 179 PFEKKIEVEVET-----LEEAEEALEAGADIIMLDN--M----SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAE 246 (269)
T ss_pred CCCCeEEEecCC-----HHHHHHHHHcCCCEEEECC--C----CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHH
Confidence 7 6789999987 6778899999999997721 1 111223334444321 1 112688887776543
No 339
>KOG1057|consensus
Probab=72.55 E-value=1.9 Score=52.91 Aligned_cols=189 Identities=14% Similarity=0.167 Sum_probs=100.6
Q ss_pred HHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCC---HHHHHHHHHH----------hCCcEEE
Q psy3968 55 FAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITT---TEEAMEFCLK----------YGLPVIF 121 (1080)
Q Consensus 55 ~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s---~ee~~~~~~~----------igfPvVV 121 (1080)
-|.+..++.-||+-++..--.+..|+-...++|++.||++|++. .++. -.+...+++. +.-|+|=
T Consensus 106 KAiaY~kLRnPFviNdL~mQyll~DRR~Vy~iLe~~gI~~PRya--~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVE 183 (1018)
T KOG1057|consen 106 KAVAYAKLRNPFVINDLDMQYLLQDRREVYSILEAEGIPLPRYA--ILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVE 183 (1018)
T ss_pred HHHHHHHhcCCeeeccccHHHHHHHHHHHHHHHHHcCCCCceeE--eecCCCCChHHhhhhcCCCeEEEcceeccCCccc
Confidence 45566677789999999999999999999999999999999873 2221 1222333321 3569999
Q ss_pred EeCCCCCCcCeEEEC--CH-hHHHHHHHHHHHHHHH------hcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEee-
Q psy3968 122 KAAYGGGGRGMRVVR--KM-EDVEENFQRASSEAKA------AFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYER- 191 (1080)
Q Consensus 122 KP~~g~Gg~GV~iv~--s~-eeL~~a~~~~~~~a~~------~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r- 191 (1080)
||+.|-- ..|.+-. +. .--++.|+++-+.+.. .-..+.++-|+|++-. --.|-++.-|- ...|.-.|
T Consensus 184 KPVs~ED-HNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptd-gtDVKvYTVGp-~YaHAEaRK 260 (1018)
T KOG1057|consen 184 KPVSAED-HNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTD-GTDVKVYTVGP-DYAHAEARK 260 (1018)
T ss_pred CCCCccc-ccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCC-CccceEEeeCc-chhhhhhcc
Confidence 9987541 1111110 00 0112223332211100 0013578999999852 11222221110 11111111
Q ss_pred ----eccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEec
Q psy3968 192 ----DCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNA 255 (1080)
Q Consensus 192 ----~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNp 255 (1080)
+..+.|+..----..|. .++++. ..+|.+++-+++-.- |.+|++. .+|+=|++.||.
T Consensus 261 SPvvDGkV~Rns~GKEvRYpv-~Ls~~E----K~iA~KVciAF~Q~V-CGFDLLR-a~G~SYVcDVNG 321 (1018)
T KOG1057|consen 261 SPVVDGKVERNSDGKEVRYPV-ILNSSE----KQIARKVCIAFKQTV-CGFDLLR-ANGKSYVCDVNG 321 (1018)
T ss_pred CccccceeeecCCCceeecee-ecChhh----HHHHhHHHhhccccc-cchHHhh-cCCceEEEeccc
Confidence 11111111111112243 344322 346888888877653 4478765 478899999996
No 340
>PF13437 HlyD_3: HlyD family secretion protein
Probab=72.53 E-value=3.9 Score=38.42 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=29.3
Q ss_pred eEecCCCeEEeEeeee--eeeecCceeEEecCCch
Q psy3968 953 VVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPDN 985 (1080)
Q Consensus 953 ~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~~ 985 (1080)
+|+||.+|+|..+.++ +.|..|++|+.|...++
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 35 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTDD 35 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccce
Confidence 5899999999999999 99999999999975543
No 341
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=72.50 E-value=3.9 Score=48.53 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=31.6
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
-+|.||-.|+|.++++++||+|.-|++|++|+.-
T Consensus 46 ~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 46 MEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred EEecCCCCeEEEEEeccCCCEEcCCCeEEEEecC
Confidence 4578999999999999999999999999999885
No 342
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=72.23 E-value=3.8 Score=47.17 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=32.0
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
+...|+||+.|.|..+.+++|+.|..|++|+.|-.+
T Consensus 202 ~~~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 202 QDTELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred hcCEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 346799999999999999999999999999988544
No 343
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=71.15 E-value=3.7 Score=46.96 Aligned_cols=32 Identities=47% Similarity=0.580 Sum_probs=29.3
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
.+.++..|.|.+++|++||.|++||+|+.++.
T Consensus 68 ~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 57777899999999999999999999999887
No 344
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=71.02 E-value=5.1 Score=47.82 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=30.8
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
..|+||+.|+|..+.+.+|+.|..|++|+.|..
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~ 286 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEV 286 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence 579999999999999999999999999999953
No 345
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.67 E-value=44 Score=37.53 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=101.2
Q ss_pred ccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCcccccc
Q psy3968 339 SAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTL 418 (1080)
Q Consensus 339 ~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~ 418 (1080)
....|..+.++ ..+..+-+...+.-.+.+-+...|.. .-|+.|.-....+.++++ ++...++
T Consensus 63 ~~~dG~~v~~g--~~i~~i~G~a~~ll~~Er~~ln~l~~--~SGIAT~t~~~v~~~~~~-------~~~i~~T------- 124 (273)
T PRK05848 63 TIKDGERFKKG--DILMEIEGDFSMLLKVERTLLNLLQH--SSGIATLTSRYVEALESH-------KVKLLDT------- 124 (273)
T ss_pred EcCCCCEecCC--CEEEEEEECHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC-------CeEEEec-------
Confidence 35788888877 67777766666666666666666665 458877777777777553 2333333
Q ss_pred CCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCC--CeeeeccccCccChHHHHHHHHHHHHHCCC-Cc
Q psy3968 419 QPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLG--KLINTFDMAGLLKPRAAKLLIGAIREKHPD-IP 495 (1080)
Q Consensus 419 ~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G--~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~-~~ 495 (1080)
++...-.+.+..|...+- ||--+ | +| +.|-|+|-==.. -..+.+.++.+|+++|. .+
T Consensus 125 RKt~Pg~r~~~k~Av~~G----Gg~~H-R--------------~gL~d~vlikdnHi~~-~g~i~~~v~~~k~~~p~~~~ 184 (273)
T PRK05848 125 RKTRPLLRIFEKYSVRNG----GASNH-R--------------LGLDDCLMLKDTHLKH-IKDLKEFIQHARKNIPFTAK 184 (273)
T ss_pred CCCCcchhHHHHHHHHhC----CCccc-c--------------CCchhhhCcCHHHHHH-HCcHHHHHHHHHHhCCCCce
Confidence 111112233444432211 11100 0 22 344444430000 02568889999999984 77
Q ss_pred eEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc--CCC-------CCCCCHHHHHHHHH
Q psy3968 496 IHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG--SDI-------DTGLDLKDISAYSA 564 (1080)
Q Consensus 496 i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~--~g~-------~~~~d~~~l~~~~~ 564 (1080)
|.+=+.+ +.-.+.|+++|+|+|-. =|++.+++..+.+. .+. .-||+++.+.++++
T Consensus 185 I~VEv~t-----leea~~A~~~GaDiI~L---------Dn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~ 248 (273)
T PRK05848 185 IEIECES-----LEEAKNAMNAGADIVMC---------DNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAK 248 (273)
T ss_pred EEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHH
Confidence 7776663 66778899999999983 24566666555542 111 22688888776544
No 346
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=70.64 E-value=4.3 Score=48.35 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=31.0
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
..|+||+.|+|.+..|++|+.|..|++|+.|...
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~ 243 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 243 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcC
Confidence 4699999999999999999999999999987544
No 347
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=70.08 E-value=3.5 Score=36.78 Aligned_cols=22 Identities=50% Similarity=0.797 Sum_probs=16.2
Q ss_pred EEEEecCCCeeecCCEEEEEEc
Q psy3968 926 MEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 926 ~~~~v~~G~~V~~g~~~~~iea 947 (1080)
+.++++.||.|++||+|++|=+
T Consensus 34 i~l~~k~Gd~V~~Gd~l~~i~~ 55 (75)
T PF07831_consen 34 IELHKKVGDRVEKGDPLATIYA 55 (75)
T ss_dssp EEESS-TTSEEBTTSEEEEEEE
T ss_pred eEecCcCcCEECCCCeEEEEEc
Confidence 5678899999988887776543
No 348
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=68.48 E-value=39 Score=37.98 Aligned_cols=176 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred EEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCC
Q psy3968 333 IRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412 (1080)
Q Consensus 333 vr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~ 412 (1080)
+.+.. ....|+.+.++ ..+..+-+...+.-.+.+-+...++. .-|+.|.-..+.+.++.-. .++.-+++
T Consensus 60 ~~~~~-~~~dG~~v~~g--~~i~~~~G~a~~ll~~eR~alN~l~~--~SGIAT~T~~~V~~~~~~~-----~~~~I~~T- 128 (277)
T TIGR01334 60 ASIDY-AVPSGSRALAG--TLLLEAKGSAGQLHQGWKSAQSVLEW--SCGVATYTHKMVTLAKKIS-----PMAVVACT- 128 (277)
T ss_pred CEEEE-EeCCCCEeCCC--CEEEEEEecHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcC-----CCCEEEec-
Confidence 34443 35788888887 67888777666666666666666655 4588777666666665421 12222221
Q ss_pred ccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccc----------cCccChHHHHH
Q psy3968 413 PQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDM----------AGLLKPRAAKL 482 (1080)
Q Consensus 413 ~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt----------~G~~~P~~~~~ 482 (1080)
++...-.+.+..|.-.+- | +.+ .++.+.|+ .|. +..+.+
T Consensus 129 ------RKT~Pg~R~l~k~Av~~G--G-g~~--------------------HR~gLsd~ilikdnHi~~~g~--~~~i~~ 177 (277)
T TIGR01334 129 ------RKAIPLTRPLAVKAVLAA--G-GVI--------------------HRIGLSETLLVFANHRTFLND--NFDWGG 177 (277)
T ss_pred ------CCCCCChhHHHHHHHHhC--C-CcC--------------------eecCCchhheehHHHHHHhCC--cccHHH
Confidence 011112223333321110 1 100 13444444 221 245888
Q ss_pred HHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHH---HHHHHhc--C----CCCCC
Q psy3968 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGA---VVASLQG--S----DIDTG 553 (1080)
Q Consensus 483 lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~---~v~~l~~--~----g~~~~ 553 (1080)
.++.+|+..|...|.+-+. .+.-+..|+++|+|+|-.= |-+.|+ .+..++. . ...-|
T Consensus 178 av~~~r~~~~~~kIeVEv~-----tleea~ea~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGG 243 (277)
T TIGR01334 178 AIGRLKQTAPERKITVEAD-----TIEQALTVLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGG 243 (277)
T ss_pred HHHHHHHhCCCCCEEEECC-----CHHHHHHHHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEECC
Confidence 8999999887777777665 6788899999999998766 334444 4444431 1 12237
Q ss_pred CCHHHHHHHHH
Q psy3968 554 LDLKDISAYSA 564 (1080)
Q Consensus 554 ~d~~~l~~~~~ 564 (1080)
|+++.+.+++.
T Consensus 244 I~~~ni~~ya~ 254 (277)
T TIGR01334 244 INPENIADYIE 254 (277)
T ss_pred CCHHHHHHHHh
Confidence 89988887654
No 349
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=67.58 E-value=14 Score=44.36 Aligned_cols=134 Identities=23% Similarity=0.263 Sum_probs=83.1
Q ss_pred CCCCC-CCCCCCCCCCCC---CCCC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 443 PLATP-LLPAEVTPPVPE---IPLG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 443 p~~~~-~~~~~~~~~~~~---~~~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|.+|. .+...|.+.+.. ++.| +.|+=+=--=+.++++..++|..||+.-|..+|.+-.=.-.|-++..+. +.+|
T Consensus 248 PGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaag-vakA 326 (485)
T COG0069 248 PGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAG-VAKA 326 (485)
T ss_pred CCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhh-hhhc
Confidence 43443 334444444332 2356 5555333333568899999999999987777788877776666665554 7899
Q ss_pred CCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCc
Q psy3968 518 GADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGG 597 (1080)
Q Consensus 518 G~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG 597 (1080)
|||.| ++.|+.||||..+...+ +..|+.+ .-.|.++-+.+... .-++...-+.-||
T Consensus 327 ~AD~I--~IdG~~GGTGAsP~~~~----~~~GiP~---e~glae~~q~L~~~---------------glRd~v~l~~~Gg 382 (485)
T COG0069 327 GADVI--TIDGADGGTGASPLTSI----DHAGIPW---ELGLAETHQTLVLN---------------GLRDKVKLIADGG 382 (485)
T ss_pred cCCEE--EEcCCCCcCCCCcHhHh----hcCCchH---HHHHHHHHHHHHHc---------------CCcceeEEEecCC
Confidence 99997 67899999999886433 3344332 11334444444331 1134456677888
Q ss_pred hhhc
Q psy3968 598 QYTN 601 (1080)
Q Consensus 598 ~~sn 601 (1080)
..|.
T Consensus 383 l~Tg 386 (485)
T COG0069 383 LRTG 386 (485)
T ss_pred ccCH
Confidence 7764
No 350
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=67.35 E-value=16 Score=42.06 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=45.7
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhc---CCCc
Q psy3968 84 RQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAF---GNGA 160 (1080)
Q Consensus 84 r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~---g~~~ 160 (1080)
++-.++.||...|+ +|||+..|.-|.||..++|.+|+...=++-+..-...- .-.+
T Consensus 246 r~KY~eYgI~e~Pf---------------------ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~ 304 (403)
T TIGR02049 246 QKKYEEYGIHTQPY---------------------VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSE 304 (403)
T ss_pred HHHHHHcCCCCCCe---------------------EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccce
Confidence 34466777777776 79999999999999999999999875554433211111 1247
Q ss_pred EEEeeccCC
Q psy3968 161 MFIEKFIER 169 (1080)
Q Consensus 161 vlVEeyI~G 169 (1080)
++|||=|.-
T Consensus 305 VIiQEGV~T 313 (403)
T TIGR02049 305 VIIQEGVYT 313 (403)
T ss_pred EEEecCcce
Confidence 888886654
No 351
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.97 E-value=4.6 Score=47.91 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=35.2
Q ss_pred CCcccCCCCeEEEEEEe-cCCCeeecCCEEEEEEc----cCCceeEecCCCe
Q psy3968 914 PGQVGAPMPGSVMEIRV-KVGDKVEKGAALVVLSA----MKMEMVVQAPVQG 960 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v-~~G~~V~~g~~~~~iea----mKm~~~i~a~~~G 960 (1080)
...|+||+.|+|..+.+ ++|+.|..|++|+.|-. |+++..|+...-|
T Consensus 271 ~~~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~~~~~~v~~~v~~~~~~ 322 (423)
T TIGR01843 271 RLIIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPEDDPLEIEAKLSPKDIG 322 (423)
T ss_pred hcEEECCCCcEEEEEEEEccCceecCCCeeEEEecCCCcEEEEEEEChhhhh
Confidence 35699999999999986 79999999999998842 3444444443333
No 352
>PRK07360 FO synthase subunit 2; Reviewed
Probab=66.22 E-value=36 Score=39.95 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=91.7
Q ss_pred CC-CeeeeccccCc---cC-hHHHHHHHHHHHHHCCCCceEE-------eeCCCCchhHHHHHHHH-HcCCCEEeeccCC
Q psy3968 462 LG-KLINTFDMAGL---LK-PRAAKLLIGAIREKHPDIPIHI-------HTHDTSGAGVASMIACA-EAGADVVDVAVDS 528 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~---~~-P~~~~~lv~~l~~~~p~~~i~~-------H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~g 528 (1080)
.| .+|+|. .|. .. +..+.++++.+|+.+|++.+.. |.-.+.|+..-..+..+ +||++.+..|...
T Consensus 106 ~G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e 183 (371)
T PRK07360 106 RGATEVCIQ--GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAE 183 (371)
T ss_pred CCCCEEEEc--cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchh
Confidence 56 678877 342 11 4457889999998875443331 22336788877765555 7999999633322
Q ss_pred CC-------CCCCCCcHHHHHHH---HhcCCCCC------CC--CHHHHHHHHHHHHHHHhccCCCCccCCCCcCCccee
Q psy3968 529 MS-------GMTSQPSMGAVVAS---LQGSDIDT------GL--DLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVY 590 (1080)
Q Consensus 529 lg-------~~~g~~~~e~~v~~---l~~~g~~~------~~--d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 590 (1080)
+. -+++..++++-+.. ++..|+.+ |+ ..+...+....++++...+..|. ..+.
T Consensus 184 ~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~~g~~---------~fIp 254 (371)
T PRK07360 184 ILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQETGGIT---------EFVP 254 (371)
T ss_pred hccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhchhhCCee---------EEEe
Confidence 21 14555566555544 45666654 22 33333333344444433332221 1111
Q ss_pred ccCC-CCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCC-ccccCCCchhhHH---hhHHHH-hhcccH
Q psy3968 591 LNEI-PGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGD-IIKVTPSSKVVGD---FAQFMV-QNKLTS 656 (1080)
Q Consensus 591 ~~~i-PGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~-~~~VTP~Sqivg~---qA~~~v-~n~l~~ 656 (1080)
..-+ || +.|.....-..-...+++ ++.++-.|-.|.. .+.+..+....|. |..|+. .|++.|
T Consensus 255 ~~f~~~~---Tpl~~~~~~~~~~~~~~~-lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l~~Gan~~~~ 322 (371)
T PRK07360 255 LPFVHEN---APLYERGRVKGGAPGLED-LLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVALNCGANDLGG 322 (371)
T ss_pred ccccCCC---CccccccccCCCCCHHHH-HHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHHhcCCccCcC
Confidence 1111 23 222111000000123444 9999999999977 4556555555554 323333 466543
No 353
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=65.95 E-value=1.5e+02 Score=33.29 Aligned_cols=178 Identities=20% Similarity=0.234 Sum_probs=103.7
Q ss_pred eEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecC
Q psy3968 332 GIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411 (1080)
Q Consensus 332 gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~ 411 (1080)
++.+.. ....|+.+.++ ..+..+-+...+.-.+.+-+...|.. ..|+.|+-..+.+.++.+ ++...++
T Consensus 57 ~l~v~~-~~~dG~~v~~g--~~i~~i~G~~~~ll~~Er~~ln~L~~--~SGIAT~t~~~v~~a~~~-------~~~i~~T 124 (268)
T cd01572 57 GIEVEW-LVKDGDRVEPG--QVLATVEGPARSLLTAERTALNFLQR--LSGIATLTRRYVEALAGT-------KARILDT 124 (268)
T ss_pred CeEEEE-EeCCCCEecCC--CEEEEEEECHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCC-------CEEEEeC
Confidence 444543 35678888876 67888877777777777777777665 558888877777777652 2333332
Q ss_pred CccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccc----cCccChHHHHHHHHHH
Q psy3968 412 NPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDM----AGLLKPRAAKLLIGAI 487 (1080)
Q Consensus 412 ~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt----~G~~~P~~~~~lv~~l 487 (1080)
+....-.+.+..|...+- ++--+ ++-..+.|-|+|- +|. +..-++.+
T Consensus 125 -------RKt~Pg~r~~~k~Av~~G----Gg~~H-------------R~~L~d~vlikdnHi~~~g~-----i~~~v~~~ 175 (268)
T cd01572 125 -------RKTTPGLRLLEKYAVRCG----GGDNH-------------RFGLSDAVLIKDNHIAAAGS-----ITEAVRRA 175 (268)
T ss_pred -------CCCChhhHHHHHHHHHhC----CCccc-------------cCCCcceeeeehHHHHHhCC-----HHHHHHHH
Confidence 111122334555533321 12111 0101134444443 332 24457888
Q ss_pred HHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCC--CC----CCCCHHHHH
Q psy3968 488 REKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSD--ID----TGLDLKDIS 560 (1080)
Q Consensus 488 ~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g--~~----~~~d~~~l~ 560 (1080)
|+.+| +..|++=+|+ +.-...|+++|+|+|-.-- | ..|.+-.+.+... .. -||+.+.+.
T Consensus 176 r~~~~~~~~Igvev~s-----~eea~~A~~~gaDyI~ld~--~-------~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~ 241 (268)
T cd01572 176 RAAAPFTLKIEVEVET-----LEQLKEALEAGADIIMLDN--M-------SPEELREAVALLKGRVLLEASGGITLENIR 241 (268)
T ss_pred HHhCCCCCeEEEEECC-----HHHHHHHHHcCCCEEEECC--c-------CHHHHHHHHHHcCCCCcEEEECCCCHHHHH
Confidence 88887 6778888887 5778889999999997632 2 2455554444221 11 278888877
Q ss_pred HHHH
Q psy3968 561 AYSA 564 (1080)
Q Consensus 561 ~~~~ 564 (1080)
++.+
T Consensus 242 ~~a~ 245 (268)
T cd01572 242 AYAE 245 (268)
T ss_pred HHHH
Confidence 7643
No 354
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=65.04 E-value=9.7 Score=37.43 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=15.9
Q ss_pred eeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhc
Q psy3968 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVF 1005 (1080)
Q Consensus 969 ~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~ 1005 (1080)
|.|..||+|+.++ +++.++.|.+..-..
T Consensus 90 d~V~~G~~l~~~D---------~~~i~~~~~~~~~~v 117 (124)
T cd00210 90 QRVKQGDKLLEFD---------LPAIKAAGLDDTTPV 117 (124)
T ss_pred CEEcCCCEEEEEc---------HHHHHhcCCCCEEEE
Confidence 5666666666552 245666676654443
No 355
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=64.90 E-value=7.7 Score=43.67 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=22.5
Q ss_pred eeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 952 MVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 952 ~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
.+|.++.+|+|++|+|+ +.|++||+|+.|....
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 36899999999999999 9999999999997544
No 356
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=64.60 E-value=9.5 Score=47.76 Aligned_cols=28 Identities=43% Similarity=0.615 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCC
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKM 950 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm 950 (1080)
|.=.+.+|++||+|++||+|+...-.+.
T Consensus 543 g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 543 GEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 3444558999999999999998765544
No 357
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=63.28 E-value=30 Score=40.91 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=45.0
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
.| +.|+| |++. ..+..+.++++.+|+.+|+++|-+.-=. ....+..++++|||.|-+.+
T Consensus 164 aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~----T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 164 AHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIV----TKEAALDLISVGADCLKVGI 223 (404)
T ss_pred cCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecC----CHHHHHHHHHcCCCEEEECC
Confidence 68 56665 7766 4478899999999999999887665433 34567788999999999533
No 358
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=63.11 E-value=10 Score=47.40 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEccCCc
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAMKME 951 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieamKm~ 951 (1080)
|.=.+.+|++||+|++||+|+...-.+..
T Consensus 559 G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~ 587 (627)
T PRK09824 559 GKFFTAHVNVGDKVNTGDLLIEFDIPAIR 587 (627)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHHHHH
Confidence 33345589999999999999987655433
No 359
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=63.04 E-value=7 Score=47.08 Aligned_cols=68 Identities=32% Similarity=0.483 Sum_probs=61.9
Q ss_pred cCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEE-----EccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVL-----SAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 909 ~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~i-----eamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
......+.+.|||||+|+.+.|++||+|.+||+|+++ | |.|+||.+|+|+++.++ ++|..|++|+.+.
T Consensus 570 ~~~~~~~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAMKME-----~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 570 VAAASSGELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAMKME-----NTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred ccCCCCCceecCCCceEEEEEecCCCEecCCCeEEEeEehhcc-----cceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 3455678899999999999999999999999999986 6 67899999999999999 9999999999874
No 360
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.52 E-value=15 Score=35.96 Aligned_cols=49 Identities=33% Similarity=0.495 Sum_probs=43.4
Q ss_pred ccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCcee-EecCCCeEEeEe
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMV-VQAPVQGVVKSI 965 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~-i~a~~~G~v~~~ 965 (1080)
..-|.-|-+|-.-+..|++|.+||+++-+-+=|-+.- +++|++|+|.-+
T Consensus 94 l~iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 94 LLIPVEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred EEEecCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 4567789999999999999999999999999998765 899999998655
No 361
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=61.71 E-value=1.9e+02 Score=35.77 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEec
Q psy3968 213 INVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNA 255 (1080)
Q Consensus 213 ~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNp 255 (1080)
++..++|.+++.++-+.+| .+-.|||-+ ++|++|++-.-|
T Consensus 257 p~~~~eL~~~a~~LE~~fg--~pqDIEfai-~~g~L~iLQaRp 296 (530)
T PRK05878 257 PAVYDELMAAARTLERLGR--DVQDIEFTV-ESGKLWLLQTRS 296 (530)
T ss_pred HHHHHHHHHHHHHHHHHcC--CceeEEEEE-ECCEEEEEEeec
Confidence 4567788888888887766 478899999 478899987644
No 362
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=61.59 E-value=9.2 Score=45.57 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.1
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK 949 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK 949 (1080)
...+.||..|+|.++++++||.|+.|++|+.|+.-+
T Consensus 41 ~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 41 TIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred eEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 356889999999999999999999999999997544
No 363
>PRK08444 hypothetical protein; Provisional
Probab=60.60 E-value=2e+02 Score=33.67 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=88.0
Q ss_pred CC-CeeeeccccCccCh----HHHHHHHHHHHHHCCCCceEEeeCC-----------CCchhHHHHHHHH-HcCCCEEee
Q psy3968 462 LG-KLINTFDMAGLLKP----RAAKLLIGAIREKHPDIPIHIHTHD-----------TSGAGVASMIACA-EAGADVVDV 524 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P----~~~~~lv~~l~~~~p~~~i~~H~H~-----------t~Gla~an~l~Ai-~aG~~~vd~ 524 (1080)
.| ++|+|. .| ..| ..+.++++.+|+.+|+ +|.|. ..|+.+--.+..+ +||++.+..
T Consensus 95 ~G~~ei~iv--~G-~~p~~~~e~y~e~ir~Ik~~~p~----i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g 167 (353)
T PRK08444 95 RGIKEVHIV--SA-HNPNYGYEWYLEIFKKIKEAYPN----LHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPG 167 (353)
T ss_pred CCCCEEEEe--cc-CCCCCCHHHHHHHHHHHHHHCCC----ceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCC
Confidence 56 677776 23 333 5678899999988753 44444 7899986666665 689997764
Q ss_pred ccCCC-------CCCCCCCcHHHHH---HHHhcCCCCCC------CCHHHHHHHHHHHHHHHhc---cCCCCccCCCCcC
Q psy3968 525 AVDSM-------SGMTSQPSMGAVV---ASLQGSDIDTG------LDLKDISAYSAYWEQTRQL---YAPFECTTTMKSG 585 (1080)
Q Consensus 525 s~~gl-------g~~~g~~~~e~~v---~~l~~~g~~~~------~d~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~ 585 (1080)
+-.-+ --||+..+.+..+ ...+..|+.+. + .+...+..+++..+|.. ..+|.
T Consensus 168 ~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~G~-gEt~edrv~hl~~Lr~Lq~~t~gf~-------- 238 (353)
T PRK08444 168 GGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFN-------- 238 (353)
T ss_pred CCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCccceeEEec-CCCHHHHHHHHHHHHHhccccCCce--------
Confidence 11101 0156676665544 44667777652 2 24555555555555543 33332
Q ss_pred CcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCc
Q psy3968 586 NADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSS 639 (1080)
Q Consensus 586 ~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~S 639 (1080)
..+...-.|.| +.|. .. ..-...|.++.++-.|-.|+..+-+-.++
T Consensus 239 -~fIp~~f~~~~--t~l~----~~-~~~~~~e~Lr~iAi~Rl~L~~i~ni~a~w 284 (353)
T PRK08444 239 -AFIPLVYQREN--NYLK----VE-KFPSSQEILKTIAISRILLDNIPHIKAYW 284 (353)
T ss_pred -EEEecccCCCC--CcCC----CC-CCCCHHHHHHHHHHHHHhcCCCCcccccc
Confidence 22222222221 1211 00 11345788999999999998876654543
No 364
>KOG1447|consensus
Probab=60.07 E-value=46 Score=36.50 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=70.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEeCCCCCCcC-----------eEEECCHhHHHHHHHH
Q psy3968 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLP-VIFKAAYGGGGRG-----------MRVVRKMEDVEENFQR 147 (1080)
Q Consensus 80 K~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfP-vVVKP~~g~Gg~G-----------V~iv~s~eeL~~a~~~ 147 (1080)
....++++.++|+.+-++ ...++..++.+.+..++-| .|+|+.--.|||| |++-.+.....+..++
T Consensus 24 EfQSK~~l~k~Gv~vQ~F--~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 24 EFQSKEILSKNGVRVQRF--FVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HhhhHHHHHhcCeeEEEE--EEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 356788999999999887 5678888888888887754 8999987776654 5677778877777766
Q ss_pred HHHHHHHh--cCC-----CcEEEeeccCCCcEEEEEEEEec
Q psy3968 148 ASSEAKAA--FGN-----GAMFIEKFIERPRHIEVQLLGDK 181 (1080)
Q Consensus 148 ~~~~a~~~--~g~-----~~vlVEeyI~G~~ei~v~vl~d~ 181 (1080)
........ ... +.+++-+-++-.||-...++.|+
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDR 142 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDR 142 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeecc
Confidence 55432111 011 35777777777677777777664
No 365
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.00 E-value=2.4e+02 Score=31.94 Aligned_cols=230 Identities=15% Similarity=0.142 Sum_probs=124.7
Q ss_pred HHHHHHHHcCCCCCCCCCCccccccCe-EEEEeeeccCCCCCCCCCCCCce---EEEEcCCcceEEEcCCccCCCceecc
Q psy3968 273 VQSQIRVAEGMTLPELGLTQEKISPQG-FAIQCRVTTEDPAKNFQPDTGRI---EVFRSGEGMGIRLDGASAFAGAIISP 348 (1080)
Q Consensus 273 ~~~~l~~alG~~l~~l~~~~~~i~~~g-~ai~~ri~ae~p~~~f~p~~G~i---~~~~~~~~~gvr~d~~~~~~G~~i~~ 348 (1080)
.+..++.++-+.++..+++........ ....+.+.+.++. . ..|.- ..+..- ++.+.+.. ....|+.+.+
T Consensus 13 ~~~~i~~~l~ED~~~~DlTt~~~~~~~~~~~~~~i~ar~~g--v--~~G~~~a~~i~~~~-~~~~~~~~-~~~dG~~v~~ 86 (288)
T PRK07428 13 LDPLLQQWLREDIGRGDRTTQGLLLEDATTGQAKWIAKESG--V--IAGLPIAARVFQLL-DPQVSFTP-LVAEGAACES 86 (288)
T ss_pred HHHHHHHHHHhcCCCCCCCcccccCCCCcEEEEEEEecCCe--E--EECHHHHHHHHHHc-CCcEEEEE-EcCCCCEecC
Confidence 455566676676665455543333333 4455555554431 0 11210 111111 12243333 3568888888
Q ss_pred ccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHH
Q psy3968 349 YYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKL 428 (1080)
Q Consensus 349 ~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L 428 (1080)
+ ..+..+.+...+.-.+.+-+...|.. .-|+.|--....+.+.++ ++...++ ++...-.+.+
T Consensus 87 g--~~i~~~~G~a~~ll~~eR~~lN~l~~--~SGIAT~T~~~v~~~~~~-------~~~i~~T-------RKt~Pg~R~l 148 (288)
T PRK07428 87 G--QVVAEIEGPLDALLMGERVALNLAMR--LSGIATLTRQYVEKIADL-------PTQLVDT-------RKTTPGLRLL 148 (288)
T ss_pred C--CEEEEEEEcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC-------CeEEEec-------CCCCCcchHH
Confidence 7 67888777666666666666666665 558877666666665333 2333332 1111122334
Q ss_pred HHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCC--Ceeeecc----ccCccChHHHHHHHHHHHHHCC-CCceEEeeC
Q psy3968 429 LNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLG--KLINTFD----MAGLLKPRAAKLLIGAIREKHP-DIPIHIHTH 501 (1080)
Q Consensus 429 ~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G--~~i~i~D----t~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H 501 (1080)
..|...+- | +--+ + .| +.|-|+| ..|. +.+-++.+|+..| ...|++=+|
T Consensus 149 ~k~AV~~G--G--g~~H-------------R--~gL~d~ilikdNHi~~~g~-----i~~av~~~r~~~~~~~~I~VEv~ 204 (288)
T PRK07428 149 EKYATQVG--G--AINH-------------R--MGLDDAVMIKDNHIQAAGG-----IGEAITRIRQRIPYPLTIEVETE 204 (288)
T ss_pred HHHHHHhc--C--cccc-------------c--CCchheeeecHHHHHHhCC-----HHHHHHHHHHhCCCCCEEEEECC
Confidence 44432211 1 1000 0 23 4677776 2332 6778888999887 567888888
Q ss_pred CCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHH---HHHhc--CC----CCCCCCHHHHHHHHH
Q psy3968 502 DTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVV---ASLQG--SD----IDTGLDLKDISAYSA 564 (1080)
Q Consensus 502 ~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v---~~l~~--~g----~~~~~d~~~l~~~~~ 564 (1080)
| +.-...|+++|+|+|-.- |-+.+++- ..++. -. ..-||+.+.+.+++.
T Consensus 205 t-----leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~ 262 (288)
T PRK07428 205 T-----LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAE 262 (288)
T ss_pred C-----HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 6 666788999999999765 44445444 43331 11 112788888777543
No 366
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=59.86 E-value=19 Score=38.59 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred HHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 990 FCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 990 ~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
..+||.+.|-|+..|. ++-|..-++.+++.++++|+++|.=+ ++..-+.+.+++|.++|.|.++.
T Consensus 72 e~~ma~~aGAd~~tV~-g~A~~~TI~~~i~~A~~~~~~v~iDl-------------~~~~~~~~~~~~l~~~gvd~~~~ 136 (217)
T COG0269 72 EARMAFEAGADWVTVL-GAADDATIKKAIKVAKEYGKEVQIDL-------------IGVWDPEQRAKWLKELGVDQVIL 136 (217)
T ss_pred HHHHHHHcCCCEEEEE-ecCCHHHHHHHHHHHHHcCCeEEEEe-------------ecCCCHHHHHHHHHHhCCCEEEE
Confidence 3469999999999887 56678899999999999999888765 33334578899999999998876
No 367
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=59.37 E-value=1.1e+02 Score=34.96 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=50.0
Q ss_pred cChHHHHHHHHHHHHHCCCC-ceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCC
Q psy3968 475 LKPRAAKLLIGAIREKHPDI-PIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTG 553 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~-~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~ 553 (1080)
+.|. +.++|+++++. +.+ -+++.+|-+. |.--..-+-.+||.|+|+.|++.+-. .+..+|.+. ..
T Consensus 173 lYP~-l~~lVqalk~~-~~v~vVSmQTng~~-L~~~lv~eLeeAGLdRiNlSv~aLDp--------k~Ak~L~G~---~d 238 (414)
T COG2100 173 LYPH-LVDLVQALKEH-KGVEVVSMQTNGVL-LSKKLVDELEEAGLDRINLSVDALDP--------KLAKMLAGR---KD 238 (414)
T ss_pred cchh-HHHHHHHHhcC-CCceEEEEeeCcee-ccHHHHHHHHHhCCceEEeecccCCH--------HHHHHhcCc---cc
Confidence 4454 66788998875 454 3566666432 22333334458999999999988732 234444332 13
Q ss_pred CCHHHHHHHHHHHHH
Q psy3968 554 LDLKDISAYSAYWEQ 568 (1080)
Q Consensus 554 ~d~~~l~~~~~~~~~ 568 (1080)
+|++++.++++|+..
T Consensus 239 Ydv~kvle~aE~i~~ 253 (414)
T COG2100 239 YDVKKVLEVAEYIAN 253 (414)
T ss_pred cCHHHHHHHHHHHHh
Confidence 677777777777765
No 368
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=58.70 E-value=1.5e+02 Score=34.18 Aligned_cols=199 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred CC-CeeeeccccC---ccChHHHHHHHHHHHHHCCCCceE-------EeeCCCCchhHHHHHHHH-HcCCCEEe-eccCC
Q psy3968 462 LG-KLINTFDMAG---LLKPRAAKLLIGAIREKHPDIPIH-------IHTHDTSGAGVASMIACA-EAGADVVD-VAVDS 528 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G---~~~P~~~~~lv~~l~~~~p~~~i~-------~H~H~t~Gla~an~l~Ai-~aG~~~vd-~s~~g 528 (1080)
.| .+|+| +.| ...+..+.++++.+++..|++.++ -+.-.+.|+...-.++.+ +||++.++ ...--
T Consensus 87 ~G~~~i~l--~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~ 164 (340)
T TIGR03699 87 YGGTQILL--QGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEI 164 (340)
T ss_pred cCCcEEEE--ecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccc
Q ss_pred C---------CCCCCCCcHHHHHHHHhcCCCCC--------CCCHHHHHHHHHHHHHHHhcc------CCCCccCCCCcC
Q psy3968 529 M---------SGMTSQPSMGAVVASLQGSDIDT--------GLDLKDISAYSAYWEQTRQLY------APFECTTTMKSG 585 (1080)
Q Consensus 529 l---------g~~~g~~~~e~~v~~l~~~g~~~--------~~d~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~ 585 (1080)
+ ....+.-...+.+..++..|+.+ +-+.+.+.+...+++++.... .|... .. .
T Consensus 165 ~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f---~p-~ 240 (340)
T TIGR03699 165 LSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQDKTGGFTAFIPWTF---QP-G 240 (340)
T ss_pred cCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhCCeeEEEeecc---cC-C
Q ss_pred CcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhH---HhhHHHH-hhc----ccHH
Q psy3968 586 NADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVG---DFAQFMV-QNK----LTSE 657 (1080)
Q Consensus 586 ~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg---~qA~~~v-~n~----l~~~ 657 (1080)
++.......|. ..|.++.++-.|-.+...+-++-+....| .|..|+. .|+ ++.+
T Consensus 241 ~tpl~~~~~~~------------------~~e~l~~iA~~Rl~lp~~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~ 302 (340)
T TIGR03699 241 NTELGKKRPAT------------------STEYLKVLAISRIFLDNIPNIQASWVTQGKEVGQLALHFGANDFGSTMLEE 302 (340)
T ss_pred CCcccCCCCCC------------------HHHHHHHHHHHHHcCCCCCcccCCccccChHHHHHHHhcCCccCCCccccc
Q ss_pred HHhhhcccccCc---HHHHHhhccccCCCCCC
Q psy3968 658 EVLARAEELSFP---KSVVEFLQGAIGTPYQG 686 (1080)
Q Consensus 658 ~~~~~~~~~~~~---~~~~~~~~G~~G~~~~~ 686 (1080)
.|..-+.+.. . ++.+.++.. .|++|.+
T Consensus 303 ~~~~~~g~~~-~~~~~~~~~~i~~-~g~~~~~ 332 (340)
T TIGR03699 303 NVVAAAGATH-RASREEIIRIIRE-AGFIPAQ 332 (340)
T ss_pred cccccCCCCC-CCCHHHHHHHHHH-cCCCeee
No 369
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=58.00 E-value=12 Score=45.02 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=32.1
Q ss_pred CcccCCCCeEEEEEEecCCCe-eecCCEEEEEEccC
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDK-VEKGAALVVLSAMK 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~-V~~g~~~~~ieamK 949 (1080)
.+|.||-.|+|.+++|++|+. |+.|+++++||...
T Consensus 43 ~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 43 MEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred eEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 568899999999999999999 99999999998654
No 370
>PRK13753 dihydropteroate synthase; Provisional
Probab=57.99 E-value=86 Score=35.32 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHH
Q psy3968 480 AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASL 545 (1080)
Q Consensus 480 ~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l 545 (1080)
+...|+++++. +++|++ ||+--.+ +.+|+++||++|.-- +|+ . .|.+..+++..
T Consensus 65 v~pvI~~l~~~--~~~ISI---DT~~~~v--a~~al~aGadiINDV-sg~---~-d~~~~~vva~~ 118 (279)
T PRK13753 65 IAPLLDALSDQ--MHRVSI---DSFQPET--QRYALKRGVGYLNDI-QGF---P-DPALYPDIAEA 118 (279)
T ss_pred HHHHHHHHHhC--CCcEEE---ECCCHHH--HHHHHHcCCCEEEeC-CCC---C-chHHHHHHHHc
Confidence 34666777654 467877 5554444 458999999997654 332 2 56666655543
No 371
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=57.84 E-value=10 Score=37.31 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.3
Q ss_pred CCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 921 MPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 921 m~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
+.|.=.+++|++||+|++||+|+.+.-
T Consensus 77 l~g~gF~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 77 LNGEGFTSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred cCCCceEEEecCCCEEcCCCEEEEEcH
Confidence 557778999999999999999997753
No 372
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=57.71 E-value=19 Score=42.09 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=40.2
Q ss_pred EEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 925 VMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 925 v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
+.-+.|+.|+--..=..-..+++-+ +..|.|+.+|.|.++.+. +.|+.|++|+.++..
T Consensus 36 v~~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 36 YQTLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred eEEEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 3344555554332222333455443 448999999999999999 999999999999753
No 373
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=57.15 E-value=12 Score=44.51 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.1
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK 949 (1080)
.+|.||..|+|.++++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 46889999999999999999999999999998654
No 374
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=57.04 E-value=91 Score=35.22 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=100.1
Q ss_pred EEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCC
Q psy3968 333 IRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412 (1080)
Q Consensus 333 vr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~ 412 (1080)
+.+.. ....|+.+.++ ..++.+-+...+.-.+.+-+...+.. .-|+.|--..+.+.++... .++.-+++
T Consensus 61 ~~v~~-~~~dG~~v~~G--~~i~~~~G~a~~ll~~eR~alN~l~~--~SGIAT~T~~~V~~~~~~~-----~~~~I~~T- 129 (284)
T PRK06096 61 LTIDD-AVSDGSQANAG--QRLISAQGNAAALHQGWKAVQNVLEW--SCGVSDYLAQMLALLRERY-----PDGNIACT- 129 (284)
T ss_pred CEEEE-EeCCCCEeCCC--CEEEEEEeCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhC-----CCcEEEec-
Confidence 44443 35788888887 67777766666666666666666655 4577666665565554311 22222222
Q ss_pred ccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeecccc--------CccChHHHHHHH
Q psy3968 413 PQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMA--------GLLKPRAAKLLI 484 (1080)
Q Consensus 413 ~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~--------G~~~P~~~~~lv 484 (1080)
++...-.+.+..|.-.+- | +-- .++.|.|++ -......+.+.+
T Consensus 130 ------RKT~Pg~R~l~k~AV~~G--G--g~~-------------------HR~gLsd~vLikdNHi~~~g~~~~i~~av 180 (284)
T PRK06096 130 ------RKAIPGTRLLATQAVLAA--G--GLI-------------------HRAGCAETILLFANHRHFLHDPQDWSGAI 180 (284)
T ss_pred ------CcCCCchhHHHHHHHHcC--C--CcC-------------------ccCCcchhhhhHHHHHHHhCCcccHHHHH
Confidence 111112233444422211 1 100 245555554 011223577888
Q ss_pred HHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHH---HHHHHHhc------CCCCCCCC
Q psy3968 485 GAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMG---AVVASLQG------SDIDTGLD 555 (1080)
Q Consensus 485 ~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e---~~v~~l~~------~g~~~~~d 555 (1080)
+.+|+..|...|++-+- .+.-...|+++|+|+|-. -|-+.| +.+..++. ....-||+
T Consensus 181 ~~~r~~~~~~kIeVEv~-----tleqa~ea~~agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~ 246 (284)
T PRK06096 181 NQLRRHAPEKKIVVEAD-----TPKEAIAALRAQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLAGGIN 246 (284)
T ss_pred HHHHHhCCCCCEEEECC-----CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCCC
Confidence 99999887666777664 577888999999999988 233344 44444431 12223788
Q ss_pred HHHHHHHHH
Q psy3968 556 LKDISAYSA 564 (1080)
Q Consensus 556 ~~~l~~~~~ 564 (1080)
++.+.+++.
T Consensus 247 ~~ni~~yA~ 255 (284)
T PRK06096 247 LNTLKNYAD 255 (284)
T ss_pred HHHHHHHHh
Confidence 888877554
No 375
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=56.56 E-value=95 Score=34.54 Aligned_cols=116 Identities=17% Similarity=0.297 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCCEEEeC--CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q psy3968 20 PVEAYLNIPEIIRVAKENDVDAIHPG--YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPG 97 (1080)
Q Consensus 20 ~~~~yld~e~Ii~~a~~~~iDaVipg--~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~ 97 (1080)
..+.|.+++..++-+++.++-+|..- .|... ..+.+.+++.|+.|- --..|-+.+++.|+-+.++
T Consensus 90 atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliD--G~fR~~LEe~Gmgy~-----------~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 90 ATDPFRDMDRFLDELKELGFSGVQNFPTVGLID--GQFRQNLEETGMGYD-----------REVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG----HHHHHHHHHTT--HH-----------HHHHHHHHHHHTT-EE--E
T ss_pred CcCCCCcHHHHHHHHHHhCCceEEECCcceeec--cHHHHHHHhcCCCHH-----------HHHHHHHHHHHCCCeeeee
Confidence 45679999999999999999998754 44443 889999999998652 1345667889999999988
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEeCC--CCCCcCeEEECCHhHHHHHHHHHHHHHH
Q psy3968 98 TPGPITTTEEAMEFCLKYGLPVIFKAAY--GGGGRGMRVVRKMEDVEENFQRASSEAK 153 (1080)
Q Consensus 98 ~~~~v~s~ee~~~~~~~igfPvVVKP~~--g~Gg~GV~iv~s~eeL~~a~~~~~~~a~ 153 (1080)
+-+.+++.+.+ +.|--+++=-.. .+|..|.....+.++..+.++++...+.
T Consensus 157 ----vf~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~ 209 (268)
T PF09370_consen 157 ----VFNEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAAR 209 (268)
T ss_dssp ----E-SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHH
T ss_pred ----ecCHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHH
Confidence 66899998877 456555554332 2356777778888888888777776554
No 376
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=56.33 E-value=17 Score=39.67 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=47.1
Q ss_pred CccChHHH--HHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCc-HHHHHHHHhcCC
Q psy3968 473 GLLKPRAA--KLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPS-MGAVVASLQGSD 549 (1080)
Q Consensus 473 G~~~P~~~--~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~-~e~~v~~l~~~g 549 (1080)
|...|+-. .+.+++||+..|++++.+|.|-+.... -.-.+.++|+|+|-.=. - . ... +...+..++..|
T Consensus 43 g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~--~i~~~~~~Gad~itvH~--e--a--~~~~~~~~l~~ik~~G 114 (228)
T PTZ00170 43 GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEK--WVDDFAKAGASQFTFHI--E--A--TEDDPKAVARKIREAG 114 (228)
T ss_pred CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHH--HHHHHHHcCCCEEEEec--c--C--CchHHHHHHHHHHHCC
Confidence 44444422 357888898878999999999333222 12566789999985422 2 1 123 567777777777
Q ss_pred CCCCC
Q psy3968 550 IDTGL 554 (1080)
Q Consensus 550 ~~~~~ 554 (1080)
...|+
T Consensus 115 ~~~gv 119 (228)
T PTZ00170 115 MKVGV 119 (228)
T ss_pred CeEEE
Confidence 66654
No 377
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=55.37 E-value=39 Score=35.62 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=45.9
Q ss_pred CCCeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCC
Q psy3968 462 LGKLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMT 533 (1080)
Q Consensus 462 ~G~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~ 533 (1080)
.|+.|.=-|...-..|....++++.+|+++ ..+-.-|- .+...+.|.++|+|.|-+|++|+-+-+
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis-----t~ee~~~A~~~G~D~I~TTLsGYT~~t 127 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS-----TLEEAINAAELGFDIIGTTLSGYTPYT 127 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S-----SHHHHHHHHHTT-SEEE-TTTTSSTTS
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC-----CHHHHHHHHHcCCCEEEcccccCCCCC
Confidence 675555568888889999999999999987 45444443 377889999999999999999995443
No 378
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=55.25 E-value=13 Score=42.95 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC---CC
Q psy3968 83 ARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG---NG 159 (1080)
Q Consensus 83 ~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g---~~ 159 (1080)
.++-.++.||...|+ ++||+..|.-|.||..|+|.+|+...=++.+..-...-+ -.
T Consensus 248 ir~KY~eygI~e~Pf---------------------V~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~ 306 (404)
T PF08886_consen 248 IRKKYKEYGIKEKPF---------------------VFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVS 306 (404)
T ss_dssp HHHHHHHHT--S------------------------EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---
T ss_pred HHHHHHHcCCCCCce---------------------EEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccc
Confidence 445577889988876 799999999999999999999986544444332111111 24
Q ss_pred cEEEeeccCC
Q psy3968 160 AMFIEKFIER 169 (1080)
Q Consensus 160 ~vlVEeyI~G 169 (1080)
++||||=|.-
T Consensus 307 ~VIIQEGV~T 316 (404)
T PF08886_consen 307 EVIIQEGVYT 316 (404)
T ss_dssp EEEEEE----
T ss_pred eeEEecCcch
Confidence 7999987765
No 379
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=55.16 E-value=48 Score=40.45 Aligned_cols=48 Identities=29% Similarity=0.323 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCC
Q psy3968 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528 (1080)
Q Consensus 477 P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~g 528 (1080)
+..+.+.++.+++.+|+++|.+ -.++....+..++++|||.|++++++
T Consensus 253 ~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~g~ 300 (486)
T PRK05567 253 SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGIGP 300 (486)
T ss_pred chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECCCC
Confidence 4678899999999999999888 34667778899999999999975543
No 380
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=55.12 E-value=80 Score=35.44 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=46.8
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCC
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~gl 529 (1080)
.| +.| |-.-.++| +.+++..+|++| ++|+-.-|-| +..++.+++.|+|+|-|+..|.
T Consensus 88 ~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~g 145 (287)
T TIGR00343 88 LGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEAG 145 (287)
T ss_pred cCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccCC
Confidence 45 455 88888999 689999999999 8888766654 7788999999999999998643
No 381
>KOG3111|consensus
Probab=54.73 E-value=19 Score=37.69 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ 546 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~ 546 (1080)
++.-.-|++||+++|++.|++ |-|++..|.-++.+|||+.+=+..+=+ +.++-.+++..|+
T Consensus 154 e~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsavf----~a~d~~~vi~~lr 214 (224)
T KOG3111|consen 154 EDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAVF----GAADPSDVISLLR 214 (224)
T ss_pred HHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEEecceee----cCCCHHHHHHHHH
Confidence 344556899999999988887 679999999999999999875544333 2334455555554
No 382
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=54.58 E-value=2.3e+02 Score=32.32 Aligned_cols=184 Identities=17% Similarity=0.115 Sum_probs=104.8
Q ss_pred CCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccCC
Q psy3968 341 FAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQP 420 (1080)
Q Consensus 341 ~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~ 420 (1080)
..|..+.++ ..+..+-....+.-.+.+-+...|.. .-|+.|+-..+.+.++.+ ++...++. .
T Consensus 59 ~dG~~v~~g--~~i~~i~G~~~~ll~~Er~~Ln~L~~--~SgIAT~t~~~v~~~~~~-------~~~i~~TR-------K 120 (302)
T cd01571 59 PEGTIFNPK--EPVLRIEGPYQDFGELETAILGILAR--ASSIATNAARVKLAAGDK-------PVISFGDR-------R 120 (302)
T ss_pred CCCCEECCC--CcEEEEEeCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCC-------cEEEeecc-------c
Confidence 456667666 56777766666666666666666655 468888888888888753 33333331 1
Q ss_pred cchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccccCccChHH--------HHHHHHHHHHHCC
Q psy3968 421 TKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRA--------AKLLIGAIREKHP 492 (1080)
Q Consensus 421 ~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~G~~~P~~--------~~~lv~~l~~~~p 492 (1080)
...-.+.+..|...+ .| +-.. + .-..+.+.+.|.+|.+. +. ..+-++++++.+|
T Consensus 121 t~Pg~r~~~k~Av~~--GG--g~~h-r------------~~l~d~~l~~~~~Gti~-H~~I~~~g~~~~~A~~~~~~~~p 182 (302)
T cd01571 121 DHPAIQPMDGRAAYI--GG--CDGV-S------------TVLGAELLGEKPSGTMP-HALIQIFGGDQVEAWKAFDETYP 182 (302)
T ss_pred CCcchhHHHHHHHHh--cC--ccce-e------------hHHHHhhcCCCceechh-hHHHHHcCchHHHHHHHHHHHCC
Confidence 111122333343221 12 1110 0 00012444555555332 32 5667788888888
Q ss_pred -C--CceEEeeCCCCchhHHHHHHHHHcC---CCEEeeccCCCCCCCCCCc--HHHHHHHHhcCCCC-------CCCCHH
Q psy3968 493 -D--IPIHIHTHDTSGAGVASMIACAEAG---ADVVDVAVDSMSGMTSQPS--MGAVVASLQGSDID-------TGLDLK 557 (1080)
Q Consensus 493 -~--~~i~~H~H~t~Gla~an~l~Ai~aG---~~~vd~s~~glg~~~g~~~--~e~~v~~l~~~g~~-------~~~d~~ 557 (1080)
+ +.+++.++++ .+..++.+.++| +|.|-.= -|+++.|.++ ++.+..+|+..|.. -|+|++
T Consensus 183 ~~~~i~vevdt~~~---~v~eal~~~~~~~~~~d~I~lD--n~~~~~G~~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~ 257 (302)
T cd01571 183 EDVPRIALIDTFND---EKEEALKAAKALGDKLDGVRLD--TPSSRRGVFRYLIREVRWALDIRGYKHVKIFVSGGLDEE 257 (302)
T ss_pred CcCCeEEEEeecCc---chHHHHHHHHHhCCCCcEEEEC--CCCCCCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCHH
Confidence 3 4577888887 345667777775 5654432 4555666664 46788888755433 379999
Q ss_pred HHHHHHHH
Q psy3968 558 DISAYSAY 565 (1080)
Q Consensus 558 ~l~~~~~~ 565 (1080)
.+.+++..
T Consensus 258 ~i~~~a~~ 265 (302)
T cd01571 258 DIKELEDV 265 (302)
T ss_pred HHHHHHHc
Confidence 98887655
No 383
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.19 E-value=11 Score=45.69 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=28.4
Q ss_pred CCcccCCCCeEEEEEEecCC-CeeecCCEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVG-DKVEKGAALVVL 945 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G-~~V~~g~~~~~i 945 (1080)
...|+||+.|+|....+.+| +.|..|++|+.|
T Consensus 316 ~~~I~AP~dG~V~~~~~~~G~~~V~~G~~l~~I 348 (457)
T TIGR01000 316 KGVIKAPEDGVLHLNPETKGIKYVPKGTLIAQI 348 (457)
T ss_pred CCEEECCCCeEEEecccCCCCcEeCCCCEEEEE
Confidence 35699999999998888999 589999999987
No 384
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=53.77 E-value=14 Score=46.20 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=10.5
Q ss_pred EEEecCCCeeecCCEEEEEE
Q psy3968 927 EIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 927 ~~~v~~G~~V~~g~~~~~ie 946 (1080)
+.+|++||+|++||+|+...
T Consensus 583 ~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 583 KRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred eEEecCCCEEcCCCEEEEEc
Confidence 33455555555555555443
No 385
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.88 E-value=2.2e+02 Score=32.06 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred eEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecC
Q psy3968 332 GIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411 (1080)
Q Consensus 332 gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~ 411 (1080)
++.+.. ....|+.+.++ ..+..+-+...+.-.+.+-+...|.. .-|+.|.-..+.+.++.....---++|+
T Consensus 57 ~~~v~~-~~~dG~~v~~g--~~i~~i~G~~~~ll~~Er~~ln~l~~--~SGIAT~T~~~v~~~~~~~~~~~i~~TR---- 127 (278)
T PRK08385 57 GVKVEV-RKRDGEEVKAG--EVILELKGNARAILLVERTALNIIGR--MSGIATETRKLVELVKAVNPKVRVAGTR---- 127 (278)
T ss_pred CCEEEE-EcCCCCEecCC--CEEEEEEECHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCEEEEEeC----
Q ss_pred CccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccccCccChHHH-----HHHHHH
Q psy3968 412 NPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRAA-----KLLIGA 486 (1080)
Q Consensus 412 ~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~G~~~P~~~-----~~lv~~ 486 (1080)
....-.+.+..|...+- |+--+ ++.|.||+ +..-+.. .+.++.
T Consensus 128 --------Kt~Pg~R~l~k~Av~~G----Gg~~H-------------------R~gLsd~v-LikdnHi~~~~i~~av~~ 175 (278)
T PRK08385 128 --------KTLPGLRLLDKKAIIIG----GGEPH-------------------RFSLSDAI-LIKDNHLALVPLEEAIRR 175 (278)
T ss_pred --------CCChhhhHHHHHHHHhc----CCccc-------------------CCCCcccE-EEccCHHHHHHHHHHHHH
Q ss_pred HHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCC--------CCCHHH
Q psy3968 487 IREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDT--------GLDLKD 558 (1080)
Q Consensus 487 l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~--------~~d~~~ 558 (1080)
+|+..|..+|++-+. .+.-+..|+++|+|+|-.--. +.-.+.+.+..++..+... |++++.
T Consensus 176 ~r~~~~~~kIeVEv~-----~leea~~a~~agaDiI~LDn~------~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~n 244 (278)
T PRK08385 176 AKEFSVYKVVEVEVE-----SLEDALKAAKAGADIIMLDNM------TPEEIREVIEALKREGLRERVKIEVSGGITPEN 244 (278)
T ss_pred HHHhCCCCcEEEEeC-----CHHHHHHHHHcCcCEEEECCC------CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHH
Q ss_pred HHHHHH
Q psy3968 559 ISAYSA 564 (1080)
Q Consensus 559 l~~~~~ 564 (1080)
+.++++
T Consensus 245 i~~yA~ 250 (278)
T PRK08385 245 IEEYAK 250 (278)
T ss_pred HHHHHH
No 386
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=52.70 E-value=12 Score=43.55 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=31.8
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEE-EEEccCC
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALV-VLSAMKM 950 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~-~ieamKm 950 (1080)
..+.|+||+.|.|.+..|.+||.|..|.+|+ ++....|
T Consensus 207 ~~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~~ 245 (352)
T COG1566 207 ERTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDSF 245 (352)
T ss_pred hCCEEECCCCceEEeecccCCCeecCCCceEEEecccce
Confidence 3467999999999999999999999999998 4444443
No 387
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=51.37 E-value=26 Score=47.49 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=66.0
Q ss_pred CCCCC-CCCCCCCCCCCC---CCCC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 443 PLATP-LLPAEVTPPVPE---IPLG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 443 p~~~~-~~~~~~~~~~~~---~~~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|.+|. .+...|.+.+.+ +..| +.|+=+=.-.+-++++..+||..||+..|..||++-.=...|.+...+ -.++|
T Consensus 941 PG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~-gvaka 1019 (1485)
T PRK11750 941 PGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIAT-GVAKA 1019 (1485)
T ss_pred CCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHh-Chhhc
Confidence 43443 333444444443 3367 666655556677999999999999999888999998776666655222 24579
Q ss_pred CCCEEeeccCCCCCCCCCCcHH
Q psy3968 518 GADVVDVAVDSMSGMTSQPSMG 539 (1080)
Q Consensus 518 G~~~vd~s~~glg~~~g~~~~e 539 (1080)
|+|.| +++|..|+||..+..
T Consensus 1020 ~aD~I--~IdG~~GGTGAap~~ 1039 (1485)
T PRK11750 1020 YADLI--TISGYDGGTGASPLT 1039 (1485)
T ss_pred CCCEE--EEeCCCCCcccccHH
Confidence 99998 578999999988754
No 388
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=51.10 E-value=13 Score=34.01 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=20.3
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
|.-++|++++|+.|++||+|+.++.
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEEe
Confidence 5668899999999999999998874
No 389
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=50.98 E-value=4.3e+02 Score=30.77 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=81.5
Q ss_pred CC-CeeeeccccCc-cChHHHHHHHHHHHHHCCCCceEE-------eeCCCCchhHHHHHHHH-HcCCCEEee-ccCCCC
Q psy3968 462 LG-KLINTFDMAGL-LKPRAAKLLIGAIREKHPDIPIHI-------HTHDTSGAGVASMIACA-EAGADVVDV-AVDSMS 530 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~-~~P~~~~~lv~~l~~~~p~~~i~~-------H~H~t~Gla~an~l~Ai-~aG~~~vd~-s~~glg 530 (1080)
.| ++|+|.+-... +....+.++++.+|+.+|++.++. |.=+..|+.....+..+ +||++.+.. ++--+.
T Consensus 94 ~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~ 173 (351)
T TIGR03700 94 PGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFA 173 (351)
T ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccC
Confidence 45 57777532111 223678899999999986444433 11234688777766655 699998873 332221
Q ss_pred ------CCCCCCcHHH---HHHHHhcCCCCC------CCCHHHHHHHHHHHHHHH---hccCCCCccCCCCcCCcceec-
Q psy3968 531 ------GMTSQPSMGA---VVASLQGSDIDT------GLDLKDISAYSAYWEQTR---QLYAPFECTTTMKSGNADVYL- 591 (1080)
Q Consensus 531 ------~~~g~~~~e~---~v~~l~~~g~~~------~~d~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~- 591 (1080)
-+++..+.+. .+..++..|+.+ |+. +...+..+.+..++ ..+.+|.. .+..
T Consensus 174 ~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg-Et~edrv~~l~~Lr~l~~~~~~f~~---------fiP~~ 243 (351)
T TIGR03700 174 EEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI-ETPAHRVDHMLRLRELQDETGGFQA---------FIPLA 243 (351)
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC-CCHHHHHHHHHHHHHhhHhhCCceE---------EEeec
Confidence 2344445544 555666777665 332 23333444444443 33333321 1111
Q ss_pred cCCCCchhhcHHHHHHHCC-CCccHHHHHHHHHHHHHhCCCcc
Q psy3968 592 NEIPGGQYTNLQFQAYSLG-LGEFFEDVKKAYREANLLLGDII 633 (1080)
Q Consensus 592 ~~iPGG~~snl~~ql~~~g-~~~~~~ev~~~~~~vr~~lG~~~ 633 (1080)
++.+| +.| +... ..-...|.++.++-.|-.|..++
T Consensus 244 f~~~~---tpl----~~~~~~~~~~~e~lr~iA~~Rl~l~~i~ 279 (351)
T TIGR03700 244 FQPDN---NRL----NRLLAKGPTGLDDLKTLAVSRLYLDNIP 279 (351)
T ss_pred ccCCC---Ccc----cCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 11223 111 1110 11345788999999999997744
No 390
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=49.79 E-value=2.2e+02 Score=32.51 Aligned_cols=178 Identities=17% Similarity=0.145 Sum_probs=90.2
Q ss_pred CC-CeeeeccccC-ccChHHHHHHHHHHHHHCCCCceEEeeC---------CCCchhHHHHHHHH-HcCCCEEe-eccCC
Q psy3968 462 LG-KLINTFDMAG-LLKPRAAKLLIGAIREKHPDIPIHIHTH---------DTSGAGVASMIACA-EAGADVVD-VAVDS 528 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G-~~~P~~~~~lv~~l~~~~p~~~i~~H~H---------~t~Gla~an~l~Ai-~aG~~~vd-~s~~g 528 (1080)
.| ++|+|.+-.. ...+..+.++++.|++..|+ +++|+= ...|+...-.++.+ +||++.+. ++.-.
T Consensus 51 ~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~ 128 (309)
T TIGR00423 51 KGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEI 128 (309)
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchh
Confidence 46 6888873211 23556789999999998753 333321 24566666656655 68999884 23222
Q ss_pred CC------CCCCCCcHHH---HHHHHhcCCCCC------CC--CHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceec
Q psy3968 529 MS------GMTSQPSMGA---VVASLQGSDIDT------GL--DLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYL 591 (1080)
Q Consensus 529 lg------~~~g~~~~e~---~v~~l~~~g~~~------~~--d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 591 (1080)
+. -+++..+.++ ++..++..|+.+ |+ +.+...+....++++...+..|. ..+..
T Consensus 129 l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~f~---------~fiP~ 199 (309)
T TIGR00423 129 LDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRIRKIQEKTGGFT---------EFIPL 199 (309)
T ss_pred cCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHHHhhchhhCCee---------eEEee
Confidence 21 1234445555 445555667665 22 33344443344444322222221 11111
Q ss_pred cCC-CCchhhcHHHHHHHCC-CCccHHHHHHHHHHHHHhCCCccccCCCchhhH---HhhHHHH-hhcccH
Q psy3968 592 NEI-PGGQYTNLQFQAYSLG-LGEFFEDVKKAYREANLLLGDIIKVTPSSKVVG---DFAQFMV-QNKLTS 656 (1080)
Q Consensus 592 ~~i-PGG~~snl~~ql~~~g-~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg---~qA~~~v-~n~l~~ 656 (1080)
.-+ +|+ . .|+..+ ..-...|.++.++-.|-.|...+-++-+....| .|..|+. .|++.|
T Consensus 200 ~f~~~~t---~---~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~~~l~~~~~~~~l~~Gand~~g 264 (309)
T TIGR00423 200 PFQPENN---P---YLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASWVKLGLKLAQVALEFGANDLGG 264 (309)
T ss_pred eecCCCC---h---hhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecchhcCHHHHHHHHhCCCccCCc
Confidence 111 221 1 011111 123467889999999999986565555443333 2333333 466665
No 391
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=49.58 E-value=3.5e+02 Score=30.82 Aligned_cols=179 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred cceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeee
Q psy3968 330 GMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFI 409 (1080)
Q Consensus 330 ~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fi 409 (1080)
++.+.+.. ....|+.+.++ ..+..+-+...+.-.+.+-+...|.. .-|+.|--....+.+.++.
T Consensus 82 ~~~~~v~~-~~~dG~~v~~G--~~i~~i~G~a~~ll~~ER~~LN~L~~--~SGIAT~T~~~v~~~~~~~----------- 145 (296)
T PRK09016 82 GDDVTIEW-HVDDGDVITAN--QTLFELTGPARVLLTGERTALNFVQT--LSGVATEVRRYVELLAGTN----------- 145 (296)
T ss_pred CCCeEEEE-EcCCCCEecCC--CEEEEEEECHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC-----------
Q ss_pred cCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccccCccChH-----HHHHHH
Q psy3968 410 DENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPR-----AAKLLI 484 (1080)
Q Consensus 410 e~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~G~~~P~-----~~~~lv 484 (1080)
..+...++...-.+.+..|...+- |+--+ ++.|.|++-+-.=+ .+.+.+
T Consensus 146 ---~~i~~TRKT~Pg~R~l~k~AV~~G----GG~~H-------------------R~gLsd~iLikdNHi~~~G~i~~av 199 (296)
T PRK09016 146 ---TQLLDTRKTLPGLRSALKYAVLCG----GGANH-------------------RLGLSDAFLIKENHIIASGSIRQAV 199 (296)
T ss_pred ---eEEEecCCCCCchhHHHHHHHHhc----Ccccc-------------------cCCchhhhccCHHHHHHhCcHHHHH
Q ss_pred HHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCC------CCCHHH
Q psy3968 485 GAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDT------GLDLKD 558 (1080)
Q Consensus 485 ~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~------~~d~~~ 558 (1080)
+.+|+..|..+|++-+.+ +.-...|+++|+|+|-.- |.+.|++-.+.+...-.. ||+++.
T Consensus 200 ~~~r~~~~~~kIeVEv~s-----leea~ea~~~gaDiI~LD---------n~s~e~~~~av~~~~~~~~ieaSGGI~~~n 265 (296)
T PRK09016 200 EKAFWLHPDVPVEVEVEN-----LDELDQALKAGADIIMLD---------NFTTEQMREAVKRTNGRALLEVSGNVTLET 265 (296)
T ss_pred HHHHHhCCCCCEEEEeCC-----HHHHHHHHHcCCCEEEeC---------CCChHHHHHHHHhhcCCeEEEEECCCCHHH
Q ss_pred HHHHHH
Q psy3968 559 ISAYSA 564 (1080)
Q Consensus 559 l~~~~~ 564 (1080)
+.+++.
T Consensus 266 i~~yA~ 271 (296)
T PRK09016 266 LREFAE 271 (296)
T ss_pred HHHHHh
No 392
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=49.39 E-value=34 Score=42.97 Aligned_cols=50 Identities=22% Similarity=0.443 Sum_probs=34.6
Q ss_pred CcccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
..|.||+.|+++.+. ++-|.|=+ |+-+++.=+ +..|.||++|+|+.+.-.
T Consensus 499 ~~v~aP~~G~vi~l~-~v~D~vFs~~~~G~GvaI~P~---~~~v~AP~~G~v~~v~~T 552 (648)
T PRK10255 499 AELVSPITGDVVALD-QVPDEAFASKAVGDGVAVKPT---DKIVVSPAAGTIVKIFNT 552 (648)
T ss_pred eEEEecCCcEEEEcc-cCcchhhhcccccCcEEEeCC---CCeEEecCCeEEEEEcCC
Confidence 458899999998873 22232222 777776664 468999999999887633
No 393
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=49.02 E-value=36 Score=37.26 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=74.3
Q ss_pred eeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccC--hHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCC
Q psy3968 970 LLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPN--LILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYD 1047 (1080)
Q Consensus 970 ~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1080)
.|..|..++.+-+....++...+.++++|.|...|=|-.=++.+ ....|+.+++.|..+-.-+-.-.. .+. ...+
T Consensus 56 ~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~--~~~-~~~~ 132 (237)
T TIGR03849 56 KVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSP--EKD-SELT 132 (237)
T ss_pred eEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCC--ccc-ccCC
Confidence 46667767666666678888899999999999888887666655 445788999999877666544321 111 2578
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1048 LKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1048 ~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
++-+++.++.-+++||+-|-|--
T Consensus 133 ~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 133 PDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred HHHHHHHHHHHHHCCCcEEEEee
Confidence 89999999999999999887765
No 394
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=47.93 E-value=2.3e+02 Score=31.70 Aligned_cols=172 Identities=19% Similarity=0.247 Sum_probs=99.6
Q ss_pred ccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCcccccc
Q psy3968 339 SAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTL 418 (1080)
Q Consensus 339 ~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~ 418 (1080)
....|+.+.++ ..+..+-....+.-.+.+-+...|.. .-|+.|.-....+.++... +...++.
T Consensus 59 ~~~dG~~v~~g--~~i~~i~G~~~~il~~Er~~ln~l~~--~SGIAT~t~~~v~~~~~~~-------~~i~~TR------ 121 (265)
T TIGR00078 59 LVKDGDRVEPG--EVVAEVEGPARSLLTAERTALNFLGR--LSGIATATRKYVEAARGTN-------VRIADTR------ 121 (265)
T ss_pred EeCCCCEecCC--CEEEEEEEcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC-------eEEEecC------
Confidence 35678888877 67888877777777777777777765 5588888777777765432 3333321
Q ss_pred CCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccc----cCccChHHHHHHHHHHHHHCC-C
Q psy3968 419 QPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDM----AGLLKPRAAKLLIGAIREKHP-D 493 (1080)
Q Consensus 419 ~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt----~G~~~P~~~~~lv~~l~~~~p-~ 493 (1080)
+...-.+.+..|...+- | +-.+ ++-..+.+-|+|- +| ....-++.+|+.+| +
T Consensus 122 -Kt~Pg~r~l~k~Av~~G--G--g~~H-------------R~~L~d~ilikdnHi~~~G-----~~~~av~~~r~~~~~~ 178 (265)
T TIGR00078 122 -KTTPGLRLLEKYAVRVG--G--GDNH-------------RLGLSDAVMIKDNHIAAAG-----SIEKAVKRARAAAPFA 178 (265)
T ss_pred -CCChhhhHHHHHHHHhc--C--Cccc-------------CCCcccceeeeccHHHHhC-----CHHHHHHHHHHhCCCC
Confidence 11112233444433211 1 1111 0001134444443 23 25556788888886 6
Q ss_pred CceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHH---HHHHHhc-CCCC--CCCCHHHHHHHHH
Q psy3968 494 IPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGA---VVASLQG-SDID--TGLDLKDISAYSA 564 (1080)
Q Consensus 494 ~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~---~v~~l~~-~g~~--~~~d~~~l~~~~~ 564 (1080)
.+|++=+|+ +.-+++|.++|+|+|-. ++...++ .+..++. ..+. -||+.+.+.++.+
T Consensus 179 ~~Igvev~t-----~eea~~A~~~gaDyI~l---------d~~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~ 241 (265)
T TIGR00078 179 LKIEVEVES-----LEEAEEAAEAGADIIML---------DNMKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAE 241 (265)
T ss_pred CeEEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 788888885 47788999999999876 2233343 3443321 1111 2688888877644
No 395
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=47.77 E-value=20 Score=43.36 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=30.6
Q ss_pred CcccCCCCeEEEEEEecCCC-eeecCCEEEEEEcc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGD-KVEKGAALVVLSAM 948 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~-~V~~g~~~~~ieam 948 (1080)
..|.||-.|+|.+++|++|+ .|+.|++|++||..
T Consensus 46 ~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 46 MEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeecCCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 56889999999999999996 79999999999763
No 396
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=47.40 E-value=21 Score=40.87 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=30.3
Q ss_pred ceeEecCCC---eEEeEeeee--eeeecCceeEEecCCc
Q psy3968 951 EMVVQAPVQ---GVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 951 ~~~i~a~~~---G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
-..|.++.+ |+|.+|+|+ +.|+.||+|+.|+...
T Consensus 13 ~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 13 VVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred eEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 456889999 999999999 9999999999997643
No 397
>PRK07094 biotin synthase; Provisional
Probab=46.63 E-value=4.1e+02 Score=30.34 Aligned_cols=144 Identities=21% Similarity=0.189 Sum_probs=78.8
Q ss_pred CC-Ceeeeccc-cCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchh-HHHHHHHHHcCCCEEeeccCCCCC------C
Q psy3968 462 LG-KLINTFDM-AGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAG-VASMIACAEAGADVVDVAVDSMSG------M 532 (1080)
Q Consensus 462 ~G-~~i~i~Dt-~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla-~an~l~Ai~aG~~~vd~s~~glg~------~ 532 (1080)
.| .+|+|.+- ........+.++++.+++. +++.+.+++ |.- -..+..-.+||++.+...+-+... +
T Consensus 85 ~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i~~~~----g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~ 159 (323)
T PRK07094 85 LGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAITLSL----GERSYEEYKAWKEAGADRYLLRHETADKELYAKLH 159 (323)
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceEEEec----CCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC
Confidence 35 46666521 2334567899999999987 466555443 332 233344447999999887776531 1
Q ss_pred CCCCcHHHH---HHHHhcCCCCC------CC---CHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhh
Q psy3968 533 TSQPSMGAV---VASLQGSDIDT------GL---DLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYT 600 (1080)
Q Consensus 533 ~g~~~~e~~---v~~l~~~g~~~------~~---d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~s 600 (1080)
.++ +.++. +..++..|+.+ |+ +.+.+.+.-+++.++...+..+.. ....|| |
T Consensus 160 ~~~-s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~------------~~P~pg---T 223 (323)
T PRK07094 160 PGM-SFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGP------------FIPHPD---T 223 (323)
T ss_pred CCC-CHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeec------------cccCCC---C
Confidence 222 34444 44555666643 23 455555555555554322222111 111233 2
Q ss_pred cHHHHHHHCCCCccHHHHHHHHHHHHHhCCC
Q psy3968 601 NLQFQAYSLGLGEFFEDVKKAYREANLLLGD 631 (1080)
Q Consensus 601 nl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~ 631 (1080)
.|.. .. ....++.++.++..|..+.+
T Consensus 224 pl~~----~~-~~~~~~~~~~~a~~R~~lp~ 249 (323)
T PRK07094 224 PLKD----EK-GGSLELTLKVLALLRLLLPD 249 (323)
T ss_pred Cccc----CC-CCCHHHHHHHHHHHHHhCcC
Confidence 2211 11 23578889999999999976
No 398
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=46.43 E-value=4.6e+02 Score=34.26 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC-CCCEEEEEEec
Q psy3968 210 HLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-SGQFYFIEVNA 255 (1080)
Q Consensus 210 ~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-dG~~~~iEvNp 255 (1080)
.++++...++.+++.++-+.+|. +-.|||.++. +|++|++-.=|
T Consensus 288 ~L~~~~l~~La~l~~~lE~~fg~--pqDIEWai~~~~g~l~ILQaRP 332 (795)
T PRK06464 288 SLTDEEVLELAKQAVIIEKHYGR--PMDIEWAKDGDDGKLYIVQARP 332 (795)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCC--CceeEEEEECCCCcEEEEEeec
Confidence 47888899999999999999877 6789999985 68899998543
No 399
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=46.28 E-value=17 Score=28.19 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCChhhh
Q psy3968 989 KFCDLSVQVGMDVFRV 1004 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v 1004 (1080)
.++++|+++|||+..|
T Consensus 8 ~ar~la~e~gidl~~v 23 (39)
T PF02817_consen 8 AARKLAAELGIDLSQV 23 (39)
T ss_dssp HHHHHHHHTT--GGGS
T ss_pred HHHHHHHHcCCCcccc
Confidence 4455999999999865
No 400
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=45.75 E-value=18 Score=41.15 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=26.1
Q ss_pred EEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 943 VVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 943 ~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
..+++ =+..|.|+.+|+| ++.+. +.|..|++|+.+...
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-H
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEECh
Confidence 35555 5678999999999 99999 999999999999643
No 401
>PRK08445 hypothetical protein; Provisional
Probab=45.35 E-value=1.9e+02 Score=33.72 Aligned_cols=210 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred CC-Ceeeec-cccCccChHHHHHHHHHHHHHCCCCceEE-------eeCCCCchhHHHHHHHH-HcCCCEEe-e------
Q psy3968 462 LG-KLINTF-DMAGLLKPRAAKLLIGAIREKHPDIPIHI-------HTHDTSGAGVASMIACA-EAGADVVD-V------ 524 (1080)
Q Consensus 462 ~G-~~i~i~-Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~-------H~H~t~Gla~an~l~Ai-~aG~~~vd-~------ 524 (1080)
.| ++|.+. +-.=...++...++++.|++.+|++.++. |+=.-.|+...-.++.+ +||++.+. .
T Consensus 88 ~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~ 167 (348)
T PRK08445 88 IGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILS 167 (348)
T ss_pred cCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCC
Q ss_pred --ccCCC-CCCCCCCcHHHHHHHHhcCCCCC--------CCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccC
Q psy3968 525 --AVDSM-SGMTSQPSMGAVVASLQGSDIDT--------GLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNE 593 (1080)
Q Consensus 525 --s~~gl-g~~~g~~~~e~~v~~l~~~g~~~--------~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 593 (1080)
...-+ -...+.-.-.+.+..++..|+.+ +-..+...+....++++...+.+|.. --....+
T Consensus 168 d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq~~~~g~~~--------fi~~~~~ 239 (348)
T PRK08445 168 DRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQDETGGFRA--------FILWSFQ 239 (348)
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHHHHhCCeeE--------EeccccC
Q ss_pred CCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHH---hhHHHH-hhcccHHHHhhh------c
Q psy3968 594 IPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGD---FAQFMV-QNKLTSEEVLAR------A 663 (1080)
Q Consensus 594 iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~---qA~~~v-~n~l~~~~~~~~------~ 663 (1080)
-|| +.|..+-..... -.-.+.++.++-.|-.|...+-+--++.-.|. |..++. .|+|.|--+.+. .
T Consensus 240 p~~---tpl~~~~~~~~~-~~~~e~Lr~iAv~Rl~l~~~~~i~a~~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~~ag~ 315 (348)
T PRK08445 240 PDN---TPLKEEIPEIKK-QSSNRYLRLLAVSRLFLDNFKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVKAAGA 315 (348)
T ss_pred CCC---CcccccCCCCCC-CCHHHHHHHHHHHHHhCCCCCCccCCCcccCHHHHHHHHhcCCccCccccccccchhccCC
Q ss_pred ccccCcHHHHHhhccccCCCC
Q psy3968 664 EELSFPKSVVEFLQGAIGTPY 684 (1080)
Q Consensus 664 ~~~~~~~~~~~~~~G~~G~~~ 684 (1080)
+...-++++..+++.. |++|
T Consensus 316 ~~~~~~~~~~~~i~~~-g~~p 335 (348)
T PRK08445 316 SFRMNQAEMIELIKDI-GEIP 335 (348)
T ss_pred CCCCCHHHHHHHHHHc-CCCe
No 402
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=44.84 E-value=57 Score=36.55 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=46.1
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCC
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~gl 529 (1080)
.| +.| |-....+| +.+++..+|+++ ++++-.-|-+ +...+.|+++|+|+|-||+.|.
T Consensus 86 aGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~st-----leEal~a~~~Gad~I~TTl~gy 143 (283)
T cd04727 86 LGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGARN-----LGEALRRISEGAAMIRTKGEAG 143 (283)
T ss_pred cCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCCC-----HHHHHHHHHCCCCEEEecCCCC
Confidence 56 455 77777788 688999999998 8887655543 7788999999999999999754
No 403
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=44.82 E-value=21 Score=43.84 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=29.8
Q ss_pred CcccCCCCeEEEEEEecCCC-eeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGD-KVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~-~V~~g~~~~~iea 947 (1080)
.++.||-.|+|.++++++|+ .|+.|++|++++.
T Consensus 156 ~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~ 189 (539)
T PLN02744 156 VEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVE 189 (539)
T ss_pred eEecCCCCcEEEEEEecCCCcccCCCCEEEEEcc
Confidence 56889999999999999996 7999999998844
No 404
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=44.44 E-value=56 Score=37.19 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHcCCChhhhcc-----------ccCCccChHHHHHHHHhc----CCeEEEEEE-EecCC----CCCCCC
Q psy3968 985 NVVYKFCDLSVQVGMDVFRVFD-----------SLNYLPNLILGMEAAGKA----GGVVEAAIS-YTGDV----SDPSKK 1044 (1080)
Q Consensus 985 ~~~~~~~~~a~~~gid~~~v~~-----------~ln~~~n~~~~~~~~~~~----~~~~~~~~~-~~~~~----~~~~~~ 1044 (1080)
+.+.+.++.+.++||.-.-+|= ++|+-.=+..+++++|+. ..++..|+| ||..= .+. .-
T Consensus 59 d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~-g~ 137 (323)
T PRK09283 59 DLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILED-GY 137 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccC-Cc
Confidence 3445567788999998777773 455544467899999976 456777777 66420 001 01
Q ss_pred C---CCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1045 K---YDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1045 ~---~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
+ -|++.+.+.|--..++|||++|=-|
T Consensus 138 idND~Tl~~L~~~Al~~A~AGaDiVAPSd 166 (323)
T PRK09283 138 VDNDETLELLAKQALSQAEAGADIVAPSD 166 (323)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEEEccc
Confidence 1 3678888888888899999998666
No 405
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.86 E-value=5.3e+02 Score=29.27 Aligned_cols=233 Identities=19% Similarity=0.219 Sum_probs=125.7
Q ss_pred HHHHHHHHHcCCCCCCC-CCCccccccCeEEEEeeeccCCCCCCCCCCCCce---EEEEcCCcc-eEEEcCCccCCCcee
Q psy3968 272 LVQSQIRVAEGMTLPEL-GLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRI---EVFRSGEGM-GIRLDGASAFAGAII 346 (1080)
Q Consensus 272 l~~~~l~~alG~~l~~l-~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i---~~~~~~~~~-gvr~d~~~~~~G~~i 346 (1080)
.++..++.++-+.++.. +++.....+.+....+.+.+.++. . ..|.- ..+..--++ ++.+.. ....|+.+
T Consensus 14 ~~~~~i~~~l~ED~~~~~DlTt~~l~~~~~~~~a~i~are~g--i--laG~~~a~~if~~~~~~~~~~v~~-~~~dG~~v 88 (289)
T PRK07896 14 EARAVIRRALDEDLRYGPDVTTVATVPADAVATASVVSREAG--V--VAGLDVALLVLDEVLGTDGYEVLD-RVEDGARV 88 (289)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcCccCCCCCeEEEEEEecCCE--E--EECHHHHHHHHHHhcCCCceEEEE-EcCCCCEe
Confidence 45667777777766643 444433333344445555554321 1 12221 112111122 344543 35788888
Q ss_pred ccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHH
Q psy3968 347 SPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQ 426 (1080)
Q Consensus 347 ~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~ 426 (1080)
.++ ..+..+-+...+.-.+.+-+...|.. .-|+.|--....+.+.++. +...++. +...-.+
T Consensus 89 ~~g--~~i~~i~G~a~~ll~~ER~aLN~L~~--~SGIAT~t~~~v~~~~~~~-------~~i~~TR-------KT~Pg~R 150 (289)
T PRK07896 89 PPG--QALLTVTAPTRGLLTAERTMLNLLCH--LSGIATATAAWVDAVAGTK-------AKIRDTR-------KTLPGLR 150 (289)
T ss_pred cCC--CEEEEEEECHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC-------eEEEecC-------CCCCcch
Confidence 887 67777766666666666666666655 5588666555565554433 2223221 1111122
Q ss_pred HHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCC--Ceeeeccc----cCccChHHHHHHHHHHHHHCCCCceEEee
Q psy3968 427 KLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLG--KLINTFDM----AGLLKPRAAKLLIGAIREKHPDIPIHIHT 500 (1080)
Q Consensus 427 ~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G--~~i~i~Dt----~G~~~P~~~~~lv~~l~~~~p~~~i~~H~ 500 (1080)
.+..|...+ .| +.+- + .| +.|-|+|- .| .+.+.++.+|+..|..+|++-+
T Consensus 151 ~l~k~AV~~--GG-G~~H--------------R--~gLsd~ilIkdNHi~~~G-----~i~~ai~~~r~~~~~~kIeVEv 206 (289)
T PRK07896 151 ALQKYAVRC--GG-GVNH--------------R--MGLGDAALIKDNHVAAAG-----SVVAALRAVRAAAPDLPCEVEV 206 (289)
T ss_pred HHHHHHHHh--CC-Cccc--------------c--CCCcceeeecHHHHHHhC-----cHHHHHHHHHHhCCCCCEEEEc
Confidence 334443221 11 1000 0 22 46666662 33 5677888899888877888877
Q ss_pred CCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHH---hcCC------CCCCCCHHHHHHHHHH
Q psy3968 501 HDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASL---QGSD------IDTGLDLKDISAYSAY 565 (1080)
Q Consensus 501 H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l---~~~g------~~~~~d~~~l~~~~~~ 565 (1080)
.+ +.-...|+++|+|+|-.- |=+.|++-.++ +... ..-||+++.+.++++.
T Consensus 207 ~t-----l~ea~eal~~gaDiI~LD---------nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 207 DS-----LEQLDEVLAEGAELVLLD---------NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred CC-----HHHHHHHHHcCCCEEEeC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 54 456778899999998766 33445554444 3221 2237899888876543
No 406
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=43.73 E-value=33 Score=43.04 Aligned_cols=47 Identities=30% Similarity=0.493 Sum_probs=33.6
Q ss_pred cccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEee
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSID 966 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~~ 966 (1080)
.|.||+.|+++.+. ++-|.|=. ||-+++.=. +..|.||++|+|+.+.
T Consensus 480 ~i~aP~~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf 530 (627)
T PRK09824 480 GICSPMTGEVVPLE-QVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLF 530 (627)
T ss_pred hcccccceEEeeHH-HCCCccccccccCCceEecCC---CCeEEccCCeEEEEEc
Confidence 58888888888774 55555544 777776544 3688888888888765
No 407
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=42.57 E-value=27 Score=39.93 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=11.1
Q ss_pred EecCCCeeecCCEEEEEEc
Q psy3968 929 RVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 929 ~v~~G~~V~~g~~~~~iea 947 (1080)
+|++||.|++||.|+.+-.
T Consensus 273 ~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 273 LVREQQEVKAGQKIATMGS 291 (319)
T ss_pred ccCCcCEECCCCeEEeEcC
Confidence 3566666666666665543
No 408
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=42.57 E-value=27 Score=31.12 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=27.0
Q ss_pred CCCeEEeEeeeeeeeecCceeEEecCCchh-HHHHHHHHH
Q psy3968 957 PVQGVVKSIDASMLLRGANAVGYTNYPDNV-VYKFCDLSV 995 (1080)
Q Consensus 957 ~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~-~~~~~~~a~ 995 (1080)
|..|+.....+.+.|+.|++|++|++.++. .+.+.++.+
T Consensus 30 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~~~a~~~~~ 69 (75)
T PF07831_consen 30 PAVGIELHKKVGDRVEKGDPLATIYANDEARLEEAVERLR 69 (75)
T ss_dssp TT-EEEESS-TTSEEBTTSEEEEEEESSSSHHHHHHHHHH
T ss_pred cCcCeEecCcCcCEECCCCeEEEEEcCChHHHHHHHHHHH
Confidence 566765444444999999999999988876 565555544
No 409
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=42.46 E-value=1e+02 Score=35.61 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
.+....++++.+|+.+|+++|.. +| ......+..++++|||.|-+.+
T Consensus 118 ~~~~~~~~i~~ik~~~p~v~Vi~--G~--v~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 118 HSVYVIEMIKFIKKKYPNVDVIA--GN--VVTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred CcHHHHHHHHHHHHHCCCceEEE--CC--CCCHHHHHHHHhcCCCEEEECC
Confidence 44678899999999988788776 22 2455677888999999999854
No 410
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=41.52 E-value=65 Score=36.51 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHcCCChhhhcc-----------ccCCccChHHHHHHHHhc----CCeEEEEEE-EecCC----CCCCCC
Q psy3968 985 NVVYKFCDLSVQVGMDVFRVFD-----------SLNYLPNLILGMEAAGKA----GGVVEAAIS-YTGDV----SDPSKK 1044 (1080)
Q Consensus 985 ~~~~~~~~~a~~~gid~~~v~~-----------~ln~~~n~~~~~~~~~~~----~~~~~~~~~-~~~~~----~~~~~~ 1044 (1080)
+.+.+.++.+.++||.-.-+|- ++|.--=+..|++++|+. ..++..|+| ||..= .+.+ .
T Consensus 51 d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~~~-~ 129 (314)
T cd00384 51 DSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILKDD-Y 129 (314)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccCC-c
Confidence 4455666788999998777774 445444468899999976 467788887 66420 0010 1
Q ss_pred C---CCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1045 K---YDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1045 ~---~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
+ -|++.+.+.|--..++|||+++=-|
T Consensus 130 idND~Tl~~L~k~Als~A~AGADiVAPSd 158 (314)
T cd00384 130 VDNDATLELLAKIAVSHAEAGADIVAPSD 158 (314)
T ss_pred CccHHHHHHHHHHHHHHHHcCCCeeeccc
Confidence 1 3678888888888999999998666
No 411
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=40.87 E-value=32 Score=35.14 Aligned_cols=49 Identities=31% Similarity=0.420 Sum_probs=27.1
Q ss_pred CcccCCCCeEEEEEEecCCCeee----cCCEEEEEEccCCceeEecCCCeEEeEeee
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVE----KGAALVVLSAMKMEMVVQAPVQGVVKSIDA 967 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~----~g~~~~~ieamKm~~~i~a~~~G~v~~~~~ 967 (1080)
..|.||+.|+|+.+. ++-|.|= =||-+++.=+ +.+|.||++|+|..+.-
T Consensus 6 ~~i~sP~~G~vv~Ls-~VpD~vFs~k~mGdGiAI~P~---~g~vvAPvdG~v~~iFp 58 (156)
T COG2190 6 EEIYSPLSGEVVPLS-DVPDPVFSEKMVGDGVAIKPS---EGEVVAPVDGTVVLIFP 58 (156)
T ss_pred EEEEccCCceEEEch-hCCchHhhcccccCcEEEecC---CCeEEeccCcEEEEEee
Confidence 457777777777662 1111111 1455554433 36777788877766543
No 412
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=40.52 E-value=28 Score=38.41 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=28.5
Q ss_pred eEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 953 VVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 953 ~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
.|+||.+|+|..+.+. +.|..|++|+.|...+
T Consensus 90 ~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG 123 (265)
T ss_pred EEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence 5899999999999998 9999999999886544
No 413
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=40.13 E-value=1.2e+02 Score=37.21 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=41.7
Q ss_pred cccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCC
Q psy3968 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGM 532 (1080)
Q Consensus 470 Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~ 532 (1080)
|++-.-++ .+.++|++||+.+|+++|.. -.......+..+++||||.|.+++++=+-|
T Consensus 260 d~a~G~s~-~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g~Gs~~ 317 (495)
T PTZ00314 260 DSSQGNSI-YQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMGSGSIC 317 (495)
T ss_pred ecCCCCch-HHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCcCCccc
Confidence 55433333 35789999999999888887 234455788899999999999966443333
No 414
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=38.97 E-value=41 Score=36.04 Aligned_cols=65 Identities=22% Similarity=0.124 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCC
Q psy3968 482 LLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDT 552 (1080)
Q Consensus 482 ~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~ 552 (1080)
++++.+|+.. .+++.+|.|+-.-.....+-.++++|||.|-+... .+ ...++.++..++..|...
T Consensus 45 ~~v~~ir~~~-~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e--~g---~~~l~~~i~~~~~~g~~~ 109 (215)
T PRK13813 45 GIIEELKRYA-PVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGF--TG---RDSLKAVVEAAAESGGKV 109 (215)
T ss_pred HHHHHHHhcC-CEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCc--CC---HHHHHHHHHHHHhcCCeE
Confidence 6788888765 78899999973322222225678899999766554 22 223455555566555544
No 415
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=38.51 E-value=1.5e+02 Score=33.52 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCc---------HHHHHHHHh-cCCCCCCCCHHHHHHHHHHHHHHH
Q psy3968 501 HDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPS---------MGAVVASLQ-GSDIDTGLDLKDISAYSAYWEQTR 570 (1080)
Q Consensus 501 H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~---------~e~~v~~l~-~~g~~~~~d~~~l~~~~~~~~~~~ 570 (1080)
|.+.-.++..+..-++.|||+|| ++|-+.++|.+. +..++..|+ ..+....+|...-.-+..-++.-.
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIID--IGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~AL~~Ga 111 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIID--VGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRESAKAGA 111 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHcCC
Q ss_pred hccCCCCccCCCC-------cCCcceeccC--CCCch-------------hhcHHHHHHHC----------------CCC
Q psy3968 571 QLYAPFECTTTMK-------SGNADVYLNE--IPGGQ-------------YTNLQFQAYSL----------------GLG 612 (1080)
Q Consensus 571 ~~~~~~~~~~~~~-------~~~~~v~~~~--iPGG~-------------~snl~~ql~~~----------------g~~ 612 (1080)
..-..-.+-..-. ..-+-++.|- .|.-| ...+.++++.. |+.
T Consensus 112 diINDI~g~~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~ 191 (282)
T PRK11613 112 HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFG 191 (282)
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcC
Q ss_pred ccHHHHHHHHHHHHHh--CCCccccCCCch
Q psy3968 613 EFFEDVKKAYREANLL--LGDIIKVTPSSK 640 (1080)
Q Consensus 613 ~~~~ev~~~~~~vr~~--lG~~~~VTP~Sq 640 (1080)
+..++-++.+.++.+. ||||+++-+|-|
T Consensus 192 k~~~~n~~ll~~l~~l~~lg~Pilvg~SRK 221 (282)
T PRK11613 192 KNLSHNYQLLARLAEFHHFNLPLLVGMSRK 221 (282)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEeccc
No 416
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=38.51 E-value=81 Score=36.46 Aligned_cols=91 Identities=22% Similarity=0.278 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCChhhhcc-------ccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCC---CC----CCH------
Q psy3968 989 KFCDLSVQVGMDVFRVFD-------SLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSK---KK----YDL------ 1048 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~-------~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~------ 1048 (1080)
-..++-+++|++..|+== .-||+.+...-++.+|++|+.+-..+-|+-.-.||++ |. ++.
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~ 107 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKA 107 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHH
T ss_pred CHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHH
Confidence 344578889999888742 4566666666677889999999999999988888863 21 222
Q ss_pred --HHHHHHHHHHHHcCC--cEEEEec---CCccCCCCC
Q psy3968 1049 --KYYQNLADELVKAGT--HVLCIKV---RILLSPVNK 1079 (1080)
Q Consensus 1049 --~~~~~~~~~~~~~g~--~~~~~kd---~~~~~p~~~ 1079 (1080)
+|=.++.++|.+.|+ +.+-|=+ .|+|-|..+
T Consensus 108 v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~ 145 (332)
T PF07745_consen 108 VYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK 145 (332)
T ss_dssp HHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC
T ss_pred HHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC
Confidence 455667789999998 9999988 799988653
No 417
>PRK12784 hypothetical protein; Provisional
Probab=38.17 E-value=44 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.9
Q ss_pred CCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 920 Pm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
-++|.|-.+.|++||+|..+-.|+.+|-.
T Consensus 49 GiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 49 GISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred eeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 36799999999999999999999998854
No 418
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=38.05 E-value=64 Score=31.61 Aligned_cols=48 Identities=27% Similarity=0.484 Sum_probs=34.4
Q ss_pred ccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
|.||+.|+++.+ -+.-|.|=+ |+-+++.=. +..|.||++|+|+.+.-.
T Consensus 1 i~aP~~G~~i~l-~~v~D~vFs~~~~G~G~aI~P~---~~~v~AP~~G~v~~v~~T 52 (121)
T TIGR00830 1 IVSPISGEIVPL-DQVPDEVFAEKIVGDGFAILPT---DGKVVAPVDGKIGKIFPT 52 (121)
T ss_pred CccccCceEEEh-hhCCChHhcccCccceEEEEcC---CCeEEccCCeEEEEEccC
Confidence 468999999876 344444422 677776654 478999999999887653
No 419
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=37.99 E-value=67 Score=35.15 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=35.5
Q ss_pred cChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 475 LKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
....+..++++.+.+.+| +.|++++. .| ...+.+.++..|+|.+|++.
T Consensus 94 ~~~~~~~~~l~~i~~~lp~~~pr~l~G---~~-~P~~i~~~v~~GvD~fDs~~ 142 (238)
T PF01702_consen 94 EEKEERLEILEAIINNLPPDKPRYLLG---VG-TPEEILEAVYLGVDLFDSSY 142 (238)
T ss_dssp SHHHHHHHHHHHHHHCS-TTS-EEETT---B--SHHHHHHHHHTT--EEEESH
T ss_pred CCHHHHHHHHHHHHhhCCcccceeccC---CC-CHHHHHHHHHcCCcEEcchH
Confidence 357889999999998886 77877732 22 68899999999999999987
No 420
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=37.65 E-value=37 Score=33.82 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=34.8
Q ss_pred cccCCCCeEEEEEEecCCCee----ecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKV----EKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V----~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
.|.||+.|+++.+. +.-|.| --|+.+++.=+ ...|.||++|+|+.+.-.
T Consensus 4 ~i~aPv~G~vi~l~-~v~D~vFs~~~lG~GvaI~p~---~~~v~AP~~G~v~~i~~T 56 (132)
T PF00358_consen 4 TIYAPVSGKVIPLE-EVPDPVFSQKMLGDGVAIIPS---DGKVYAPVDGTVTMIFPT 56 (132)
T ss_dssp EEE-SSSEEEEEGG-GSSSHHHHTTSSSEEEEEEES---SSEEEESSSEEEEEE-TT
T ss_pred EEEeeCCcEEEEhh-hCCchHHCCCCCcCEEEEEcC---CCeEEEEeeEEEEEEcCC
Confidence 57899999998663 344554 22788887654 358999999999988753
No 421
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.60 E-value=1.1e+02 Score=33.94 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=54.0
Q ss_pred eeecCceeEEec-------CCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhc--CCeEEEEEEEecCCCC
Q psy3968 970 LLRGANAVGYTN-------YPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKA--GGVVEAAISYTGDVSD 1040 (1080)
Q Consensus 970 ~v~~g~~l~~~~-------~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 1040 (1080)
.++.|-=+++|+ ...|+|+++...|-++|+++..+|+.+. ++++. ..-+- -+.|..
T Consensus 33 l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~----------~ir~~~~~~plv-~m~Y~N---- 97 (256)
T TIGR00262 33 LIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLK----------KVRQKHPNIPIG-LLTYYN---- 97 (256)
T ss_pred HHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHH----------HHHhcCCCCCEE-EEEecc----
Confidence 355666677775 2347899999999999999999887653 33322 33333 566653
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1041 PSKKKYDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
|+|. --+.+..+++.++|++.|.|=|
T Consensus 98 ---pi~~-~G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 98 ---LIFR-KGVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred ---HHhh-hhHHHHHHHHHHcCCCEEEECC
Confidence 3432 1234556777889999998877
No 422
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=37.49 E-value=98 Score=37.43 Aligned_cols=46 Identities=26% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
..+.+.|+.+|+.+|+++|.. -..+....+..++++|||.|.++++
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECCC
Confidence 468889999999999999887 3356677888999999999999763
No 423
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=37.18 E-value=1.7e+02 Score=31.47 Aligned_cols=134 Identities=22% Similarity=0.229 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh-------cCCC
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ-------GSDI 550 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~-------~~g~ 550 (1080)
.++..+++.+++..+++||.+-+=+ .....+|+++|+++|.-+.++-. .+.+-.+++-.. ..+.
T Consensus 57 ~rl~~~l~~i~~~~~~~plSIDT~~-----~~v~~~aL~~g~~~ind~~~~~~----~~~~~~l~a~~~~~vV~m~~~~~ 127 (210)
T PF00809_consen 57 ERLVPVLQAIREENPDVPLSIDTFN-----PEVAEAALKAGADIINDISGFED----DPEMLPLAAEYGAPVVLMHSDGN 127 (210)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-----HHHHHHHHHHTSSEEEETTTTSS----STTHHHHHHHHTSEEEEESESSE
T ss_pred HHHHHHHHHHhccCCCeEEEEECCC-----HHHHHHHHHcCcceEEecccccc----cchhhhhhhcCCCEEEEEecccc
Confidence 3455566666663458999997765 45667788999999887765432 566666665443 1111
Q ss_pred CC------CCCHHHHHHHHHHHHHHHh----ccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHH
Q psy3968 551 DT------GLDLKDISAYSAYWEQTRQ----LYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKK 620 (1080)
Q Consensus 551 ~~------~~d~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~ 620 (1080)
.. ..+++.+.++.+++.+-.. ...+. .+++.=..-| .+.... .--++++
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~----------~~Ii~DPgig--f~~~~~---------~~~~~l~ 186 (210)
T PF00809_consen 128 PKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPR----------ERIILDPGIG--FGKDPE---------QNLELLR 186 (210)
T ss_dssp TTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--G----------GGEEEETTTT--SSTTHH---------HHHHHHH
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCH----------HHEeeccccC--cCCCHH---------HHHHHHH
Confidence 11 2234556777777766311 11111 1111111111 011111 1235777
Q ss_pred HHHHHHHhCCCccccCCCchh
Q psy3968 621 AYREANLLLGDIIKVTPSSKV 641 (1080)
Q Consensus 621 ~~~~vr~~lG~~~~VTP~Sqi 641 (1080)
.+.+++..+|+|.++--+|++
T Consensus 187 ~i~~~~~~~~~p~l~~~srk~ 207 (210)
T PF00809_consen 187 NIEELKELFGYPILVGGSRKS 207 (210)
T ss_dssp THHHHHTTSSSEBEEEETTGH
T ss_pred HHHHHHHhCCCCEEEEEeCCc
Confidence 888888888999999888875
No 424
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=36.78 E-value=57 Score=34.63 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCceEEeeCC-CCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCH
Q psy3968 480 AKLLIGAIREKHPDIPIHIHTHD-TSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDL 556 (1080)
Q Consensus 480 ~~~lv~~l~~~~p~~~i~~H~H~-t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~ 556 (1080)
..+.++.+++.+|+..+.+|.|- |-|. -...+++++|||.|-+-. .. +...++.++...+.+|...++++
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~--~~~~~~~~~Gad~i~vh~--~~---~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGE--YEAEQAFAAGADIVTVLG--VA---DDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchH--HHHHHHHHcCCCEEEEec--cC---CHHHHHHHHHHHHHcCCEEEEEe
Confidence 46789999998876555555442 3332 246778999999886332 11 12235778888888888877553
No 425
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=36.69 E-value=1e+02 Score=35.26 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=59.8
Q ss_pred cChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHH-HcCCCEEeeccCCCCCCCCCCcHHHHHHHHh---cCCC
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACA-EAGADVVDVAVDSMSGMTSQPSMGAVVASLQ---GSDI 550 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~---~~g~ 550 (1080)
+.-.++.+.++.||+.+ +-.+|+|.=-|.=++.--.+.++ +||.|-|=.-.. .++--..+..+.+|+ .+|.
T Consensus 91 ~~ieR~~~~ir~LK~ef-G~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~----~~~~~~~e~~i~~l~~A~~~g~ 165 (353)
T COG2108 91 LEIERTVEYIRLLKDEF-GEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP----RPGSKSSEKYIENLKIAKKYGM 165 (353)
T ss_pred HHHHHHHHHHHHHHHhh-ccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC----CccccccHHHHHHHHHHHHhCc
Confidence 44567899999999998 66777776655555555556665 699996644322 223334456666665 7889
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy3968 551 DTGLDLKDISAYSAYWEQT 569 (1080)
Q Consensus 551 ~~~~d~~~l~~~~~~~~~~ 569 (1080)
++|+.+.++...-+.+-++
T Consensus 166 dvG~EiPaipg~e~~i~e~ 184 (353)
T COG2108 166 DVGVEIPAIPGEEEAILEF 184 (353)
T ss_pred cceeecCCCcchHHHHHHH
Confidence 9998877776666555444
No 426
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=36.53 E-value=54 Score=41.20 Aligned_cols=48 Identities=31% Similarity=0.500 Sum_probs=31.0
Q ss_pred cccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEeee
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSIDA 967 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~~~ 967 (1080)
.|.||+.|+++.+ -++-|.|=+ ||-+++.=+ +..|.||++|+|+.+.-
T Consensus 464 ~i~aP~~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~ 515 (610)
T TIGR01995 464 SLYAPVAGEMLPL-NEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFP 515 (610)
T ss_pred eeccccceEEeeH-hhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcC
Confidence 4778888877766 344444444 666665542 46788888887776654
No 427
>PRK09234 fbiC FO synthase; Reviewed
Probab=36.51 E-value=5e+02 Score=34.09 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=97.0
Q ss_pred CC-CeeeeccccCc---cChHHHHHHHHHHHHHCCCCceEEee---------CCCCchhHHHHHHHH-HcCCCEEeeccC
Q psy3968 462 LG-KLINTFDMAGL---LKPRAAKLLIGAIREKHPDIPIHIHT---------HDTSGAGVASMIACA-EAGADVVDVAVD 527 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~---~~P~~~~~lv~~l~~~~p~~~i~~H~---------H~t~Gla~an~l~Ai-~aG~~~vd~s~~ 527 (1080)
.| ++|+|. .|. .....+.++++++|+++|+ +++|+ =...|+.+.-++..+ +||++.+..+..
T Consensus 572 ~G~tev~i~--gG~~p~~~~~~y~~lir~IK~~~p~--i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~a 647 (843)
T PRK09234 572 AGATEVCMQ--GGIHPELPGTGYADLVRAVKARVPS--MHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAA 647 (843)
T ss_pred CCCCEEEEe--cCCCCCcCHHHHHHHHHHHHHhCCC--eeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCch
Confidence 57 788887 343 2345677889999999864 44443 356799999988777 589999875444
Q ss_pred CCCC-------CCCCCcHH---HHHHHHhcCCCCC------CCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCccee-
Q psy3968 528 SMSG-------MTSQPSMG---AVVASLQGSDIDT------GLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVY- 590 (1080)
Q Consensus 528 glg~-------~~g~~~~e---~~v~~l~~~g~~~------~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 590 (1080)
.+=. +++-.+++ +++..++..|+.+ |.. +...+..+++..++..-...-+ ....+.
T Consensus 648 eil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~~~stmm~G~~-Et~edrv~hl~~LreLq~~tgG------f~~fIPl 720 (843)
T PRK09234 648 EILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHV-DTPRHWVAHLRVLRDIQDRTGG------FTEFVPL 720 (843)
T ss_pred hhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcccceEEcCC-CCHHHHHHHHHHHHhcCcccCC------eeeeeec
Confidence 4422 23444554 5666677778775 232 4555566666666544321100 001110
Q ss_pred ccCCCCchhhcHHHHHHHCC-CCccHHHHHHHHHHHHHhCC-CccccCCCchhhH---HhhHHHH-hhcccH
Q psy3968 591 LNEIPGGQYTNLQFQAYSLG-LGEFFEDVKKAYREANLLLG-DIIKVTPSSKVVG---DFAQFMV-QNKLTS 656 (1080)
Q Consensus 591 ~~~iPGG~~snl~~ql~~~g-~~~~~~ev~~~~~~vr~~lG-~~~~VTP~Sqivg---~qA~~~v-~n~l~~ 656 (1080)
.++.|. +.+. ++... -.-...|.++.++-.|-.|. ..+-+.-+.-..| .|..|+- .|.+.|
T Consensus 721 ~F~~~~---tpl~--l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~~GaNDlgG 787 (843)
T PRK09234 721 PFVHQN---APLY--LAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLRGGANDLGG 787 (843)
T ss_pred cccCCC---CCcc--cccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHhcCCcCccc
Confidence 111111 1110 00000 11345788999999999994 5554444432333 2333333 466644
No 428
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=36.07 E-value=64 Score=35.87 Aligned_cols=42 Identities=31% Similarity=0.464 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 479 AAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 479 ~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
++..+|+.+++.+ ++||.+|+++. ....+|+++|+++|+..-
T Consensus 62 rl~~~v~~~~~~~-~~plsiDT~~~-----~vi~~al~~G~~iINsis 103 (257)
T TIGR01496 62 RVVPVIKALRDQP-DVPISVDTYRA-----EVARAALEAGADIINDVS 103 (257)
T ss_pred HHHHHHHHHHhcC-CCeEEEeCCCH-----HHHHHHHHcCCCEEEECC
Confidence 4677778888777 89999999984 456778889999988663
No 429
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=34.83 E-value=3.5e+02 Score=31.74 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=28.0
Q ss_pred EecCCCeeecCCEEEEE-EccCCceeEecCC--CeEEeEeeee
Q psy3968 929 RVKVGDKVEKGAALVVL-SAMKMEMVVQAPV--QGVVKSIDAS 968 (1080)
Q Consensus 929 ~v~~G~~V~~g~~~~~i-eamKm~~~i~a~~--~G~v~~~~~~ 968 (1080)
.||+||.|..||.+..+ |.-=++|.|-.|. .|+|+.+.-.
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~~~~ 96 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIAPA 96 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEEecC
Confidence 46888888888888854 4433677776664 7888887433
No 430
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=34.69 E-value=41 Score=40.72 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=39.3
Q ss_pred cChHHHHHHHHHHHHHCCCCc----eEEeeCCCCch-----hHHHHHHHHHcCCCEEeeccCCCCCCCCCCc
Q psy3968 475 LKPRAAKLLIGAIREKHPDIP----IHIHTHDTSGA-----GVASMIACAEAGADVVDVAVDSMSGMTSQPS 537 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~----i~~H~H~t~Gl-----a~an~l~Ai~aG~~~vd~s~~glg~~~g~~~ 537 (1080)
+++.++..+.+++++.-..++ .-+-.|.|-|- .+..+.-+.-+|+.+.=.+--+++...|-.+
T Consensus 133 ~t~~Ei~~lt~AM~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~~apIvAA~Gv~VaKhsnRaits~sGTAD 204 (493)
T TIGR02645 133 MTMDEIEALTIAMADTGEMLEWDREPIMDKHSIGGVPGNKTSLIVVPIVAAAGLLIPKTSSRAITSAAGTAD 204 (493)
T ss_pred CCHHHHHHHHHHHHHhCCCccCCCCCeEEEeCCCCCCCCCEeHHHHHHHHhCCCCeeeeCCCCcCCCccHHH
Confidence 677888888888887532221 23566777665 2222223356788888888888777666543
No 431
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=34.42 E-value=1.2e+02 Score=34.86 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCC
Q psy3968 479 AAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSG 531 (1080)
Q Consensus 479 ~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~ 531 (1080)
...+.++.+++.+ ++||.+.-..+ |+....+....++|+|.|+++ |.||
T Consensus 165 ~~~~~i~~l~~~~-~vPVivK~~g~-g~s~~~a~~l~~~Gvd~I~vs--G~GG 213 (326)
T cd02811 165 GWLERIEELVKAL-SVPVIVKEVGF-GISRETAKRLADAGVKAIDVA--GAGG 213 (326)
T ss_pred HHHHHHHHHHHhc-CCCEEEEecCC-CCCHHHHHHHHHcCCCEEEEC--CCCC
Confidence 4557889999988 89999987553 777888888899999999985 5444
No 432
>PRK04350 thymidine phosphorylase; Provisional
Probab=33.75 E-value=43 Score=40.52 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=40.0
Q ss_pred cChHHHHHHHHHHHHHCCCCc----eEEeeCCCCch-----hHHHHHHHHHcCCCEEeeccCCCCCCCCCCc
Q psy3968 475 LKPRAAKLLIGAIREKHPDIP----IHIHTHDTSGA-----GVASMIACAEAGADVVDVAVDSMSGMTSQPS 537 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~----i~~H~H~t~Gl-----a~an~l~Ai~aG~~~vd~s~~glg~~~g~~~ 537 (1080)
+++.++..+.+++++.-..++ .-+-.|.|-|- .+..+.-..-+|+.+.=.+--+++..+|-.+
T Consensus 128 ~t~~Ei~~lt~AM~~~g~~l~~~~~~~vDkhgTGGd~g~t~S~~~apivAA~Gv~VaKhgnRaiss~sGTaD 199 (490)
T PRK04350 128 LDMDEIEALTRAMVETGERLDWDRPPVVDKHSIGGVPGNRTTLIVVPIVAAAGLTIPKTSSRAITSPAGTAD 199 (490)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCCCCeEEecCCCCCCCCCEeHHHHHHHHhCCCceeeecCCCCCCCCchHH
Confidence 677888888888887632221 23566777775 2222223356788888888777777666544
No 433
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.72 E-value=29 Score=40.88 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=15.2
Q ss_pred EEEecCCCeeecCCEEEEEEc
Q psy3968 927 EIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 927 ~~~v~~G~~V~~g~~~~~iea 947 (1080)
.+.|++|+.|++|++|+.+.+
T Consensus 372 ~i~v~~G~~V~AGepIa~~G~ 392 (420)
T COG4942 372 SILVNPGQFVKAGEPIALVGS 392 (420)
T ss_pred eeeecCCCEeecCCchhhccC
Confidence 457888888888888776543
No 434
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=33.61 E-value=1.5e+02 Score=35.19 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=41.9
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcC-CCEEeeccCCCCCCCCCCc
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAG-ADVVDVAVDSMSGMTSQPS 537 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG-~~~vd~s~~glg~~~g~~~ 537 (1080)
..+|....++|+.||+..+++||.+-.=-. + .......++++| +|.|+ ++|-+++++..+
T Consensus 195 ~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~-~-~~~~~a~~~~~~g~D~I~--VsG~~Ggtg~~~ 255 (392)
T cd02808 195 IYSIEDLAQLIEDLREATGGKPIGVKLVAG-H-GEGDIAAGVAAAGADFIT--IDGAEGGTGAAP 255 (392)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEECCC-C-CHHHHHHHHHHcCCCEEE--EeCCCCCCCCCc
Confidence 567889999999999998558887643222 2 334555666666 99999 566666666553
No 435
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=33.53 E-value=41 Score=40.15 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=56.0
Q ss_pred cChHHHHHHHHHHHHHCCCCc--------eEEeeCCCCchh----HHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHH
Q psy3968 475 LKPRAAKLLIGAIREKHPDIP--------IHIHTHDTSGAG----VASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVV 542 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~--------i~~H~H~t~Gla----~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v 542 (1080)
+++.++..+.+++++.-..++ .-+-.|.|-|-+ ++.+.-+.-+|+.+.=.+--|+|...|-.+
T Consensus 50 ~t~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD----- 124 (437)
T TIGR02643 50 MNRDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGDVVSLMLGPIVAACGGYVPMISGRGLGHTGGTLD----- 124 (437)
T ss_pred CCHHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCcchhHHHHHHHHhCCCCeeeecCCCcCCCCchHH-----
Confidence 688999999999887631122 235678887744 455555668899988888888877777543
Q ss_pred HHHhcC-CCCCCCCHHHHHHH
Q psy3968 543 ASLQGS-DIDTGLDLKDISAY 562 (1080)
Q Consensus 543 ~~l~~~-g~~~~~d~~~l~~~ 562 (1080)
.|+.. |+++.++.+.+.+.
T Consensus 125 -~LEalpG~~v~ls~e~~~~~ 144 (437)
T TIGR02643 125 -KLEAIPGYDIFPDPALFRRV 144 (437)
T ss_pred -HHHhCCCCCCCCCHHHHHHH
Confidence 34555 77777777666554
No 436
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=33.37 E-value=4.7 Score=46.22 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=66.1
Q ss_pred HHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEEC----CHhHHHHHHHHH
Q psy3968 73 VVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVR----KMEDVEENFQRA 148 (1080)
Q Consensus 73 ai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~----s~eeL~~a~~~~ 148 (1080)
....+.+|...++.+++.+++.|--. ........+..+++.+|+|++.||..++.+.+..+.. +.+.+..+...+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~vvfp~lh-G~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~ 123 (317)
T COG1181 45 AGLWMLDKEVTKRVLQKADVVFPVLH-GPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVA 123 (317)
T ss_pred cceEEeccccchhhcccCCEEEEeCC-CCCCCCchHHHHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCccceee
Confidence 44455566666688888888877543 2344556677888999999999999999888865321 222222222211
Q ss_pred HHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEE
Q psy3968 149 SSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVV 186 (1080)
Q Consensus 149 ~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv 186 (1080)
+... ...++++|+|.+| ..+-+-|.-+..|..+
T Consensus 124 ~~~~----~~~~~~~e~~~~~-l~~p~~Vkp~~~gSSv 156 (317)
T COG1181 124 LTRD----EYSSVIVEEVEEG-LGFPLFVKPAREGSSV 156 (317)
T ss_pred eecc----cchhHHHHHhhcc-cCCCEEEEcCCcccee
Confidence 1110 0035778888888 5666666655444433
No 437
>PRK11637 AmiB activator; Provisional
Probab=32.96 E-value=41 Score=40.32 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=11.4
Q ss_pred CCcccCCCCeEEEEE
Q psy3968 914 PGQVGAPMPGSVMEI 928 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~ 928 (1080)
+..|.|+.+|+|+.+
T Consensus 339 g~~v~A~~~G~V~~~ 353 (428)
T PRK11637 339 GTEVKAIADGRVLLA 353 (428)
T ss_pred CCeEEecCCeEEEEe
Confidence 346888888888765
No 438
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=32.32 E-value=83 Score=35.36 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccCCCCCCCCCCcHHHHHHHHh
Q psy3968 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVDSMSGMTSQPSMGAVVASLQ 546 (1080)
Q Consensus 477 P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~glg~~~g~~~~e~~v~~l~ 546 (1080)
-..+..+++.+.+.++ +|+.+|. |.|........|+++|.. ++|+|..++-+.-. -+.+++...+
T Consensus 60 ~~~~~~~v~~~a~~~~-vPV~lHl--DHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~--~tkevv~~ah 126 (286)
T COG0191 60 ADSLAHMVKALAEKYG-VPVALHL--DHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIA--ITKEVVEFAH 126 (286)
T ss_pred HHHHHHHHHHHHHHCC-CCEEEEC--CCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHH--HHHHHHHHHH
Confidence 3567889999999994 9988875 668899999999999998 68999877533211 1234555554
No 439
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=32.19 E-value=1.9e+02 Score=34.97 Aligned_cols=93 Identities=13% Similarity=0.226 Sum_probs=58.9
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHH-HcCCCEEeeccCCCCC----------------CCCCC
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACA-EAGADVVDVAVDSMSG----------------MTSQP 536 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~glg~----------------~~g~~ 536 (1080)
++.|..+.+++..+++.+|++.+.+ +|.|+.+...+.-+ +.|+|.|-.|+.++-. -+|.+
T Consensus 91 Ll~~e~~~~~l~~~~~~~~~i~i~l---sTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~ 167 (442)
T TIGR01290 91 LANIGKTFQTLELVARQLPDVKLCL---STNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGRE 167 (442)
T ss_pred ccCccccHHHHHHHHHhcCCCeEEE---ECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcc
Confidence 3566777888888888877776655 66777655555444 6789999999988731 13433
Q ss_pred c----HHHHHHHH---hcCCCC--------CCCCHHHHHHHHHHHHHH
Q psy3968 537 S----MGAVVASL---QGSDID--------TGLDLKDISAYSAYWEQT 569 (1080)
Q Consensus 537 ~----~e~~v~~l---~~~g~~--------~~~d~~~l~~~~~~~~~~ 569 (1080)
. .+.++.+| ...|.. +|+|-+.+.++++++.++
T Consensus 168 ~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~l 215 (442)
T TIGR01290 168 AADLLIERQLEGLEKLTERGILVKVNSVLIPGINDEHLVEVSKQVKEL 215 (442)
T ss_pred hHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhC
Confidence 3 12233333 334433 267778888888888765
No 440
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=31.82 E-value=1.5e+02 Score=34.68 Aligned_cols=57 Identities=25% Similarity=0.260 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHH
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMG 539 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e 539 (1080)
....+.++++++.+ ++||.+...- .|+....+..+.++|||.|+++ |. ++|+....|
T Consensus 172 ~~~le~i~~i~~~~-~vPVivK~~g-~g~s~~~a~~l~~~Gvd~I~Vs--g~-GGt~~~~ie 228 (352)
T PRK05437 172 RGWLDNIAEIVSAL-PVPVIVKEVG-FGISKETAKRLADAGVKAIDVA--GA-GGTSWAAIE 228 (352)
T ss_pred HHHHHHHHHHHHhh-CCCEEEEeCC-CCCcHHHHHHHHHcCCCEEEEC--CC-CCCCccchh
Confidence 34668899999988 8999998653 4777888888899999999994 43 355554444
No 441
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.70 E-value=82 Score=35.62 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccC
Q psy3968 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVD 527 (1080)
Q Consensus 477 P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~ 527 (1080)
...+..+++.+.++. ++|+.+|. |.|........|+++|.+ ++|+|-.
T Consensus 59 ~~~~~~~~~~~A~~~-~VPV~lHL--DHg~~~e~i~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 59 TEYLLAIVSAAAKQY-HHPLALHL--DHHEKFDDIAQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEC--CCCCCHHHHHHHHHcCCCEEEeCCCCC
Confidence 445778888888887 89988765 556678999999999998 4676653
No 442
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=31.47 E-value=8.7e+02 Score=28.38 Aligned_cols=85 Identities=12% Similarity=0.150 Sum_probs=52.3
Q ss_pred eeeec-cccCccChHHHHHHHHHHHHHCC---CCceEEeeCCCCchhHHHHHHHH-HcCCCEEeeccCCCC--------C
Q psy3968 465 LINTF-DMAGLLKPRAAKLLIGAIREKHP---DIPIHIHTHDTSGAGVASMIACA-EAGADVVDVAVDSMS--------G 531 (1080)
Q Consensus 465 ~i~i~-Dt~G~~~P~~~~~lv~~l~~~~p---~~~i~~H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~glg--------~ 531 (1080)
.|.+. +|.-++.|.+..+|++.+++.++ +..+.+=+|-+ .-..-.+.++ ++|+++|...+-++. .
T Consensus 62 ~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~--~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 139 (375)
T PRK05628 62 TVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPE--STSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDR 139 (375)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC--CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 66664 67777889999999999998763 33444444422 2223333333 589999999998874 2
Q ss_pred CCCCCcHHHHHHHHhcCCCC
Q psy3968 532 MTSQPSMGAVVASLQGSDID 551 (1080)
Q Consensus 532 ~~g~~~~e~~v~~l~~~g~~ 551 (1080)
+.+.-.....+..++..|+.
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~ 159 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFE 159 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 22222333444555666665
No 443
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=31.24 E-value=1.5e+02 Score=33.44 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=41.3
Q ss_pred cccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 470 Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
|-.-.++| +.+++..+|++| ++|+-.-|-| +..++.|+++|+|+|-|+
T Consensus 101 D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~~-----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 101 DESEVLTP--ADEEYHIDKWDF-TVPFVCGARN-----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred eccCCCCc--hHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCeeecc
Confidence 88888999 669999999999 8888766554 778899999999999988
No 444
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.20 E-value=4.6e+02 Score=29.31 Aligned_cols=147 Identities=15% Similarity=0.127 Sum_probs=76.4
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHH-HcCCCEEeeccCCCCC-----CCC
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACA-EAGADVVDVAVDSMSG-----MTS 534 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~glg~-----~~g 534 (1080)
.| .+++|.++.+-..+....+++..+++......+.+-.| .|.-....+..+ +||++.|...+- ... -.+
T Consensus 77 ~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~--~g~~~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~ 153 (296)
T TIGR00433 77 AGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCAT--LGLLDPEQAKRLKDAGLDYYNHNLD-TSQEFYSNIIS 153 (296)
T ss_pred CCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEec--CCCCCHHHHHHHHHcCCCEEEEccc-CCHHHHhhccC
Confidence 45 57788777776677665666666654321222333333 355556666666 899999887776 221 011
Q ss_pred CCcHHHHHH---HHhcCCCCC------CC--CHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHH
Q psy3968 535 QPSMGAVVA---SLQGSDIDT------GL--DLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQ 603 (1080)
Q Consensus 535 ~~~~e~~v~---~l~~~g~~~------~~--d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~ 603 (1080)
.-+.+..+. .++..|+.+ |+ +.+.+.+..+++.++.....++ ...+.+||-.+-.
T Consensus 154 ~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l------------~~l~p~~gT~l~~-- 219 (296)
T TIGR00433 154 THTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPI------------NFLVKIKGTPLAD-- 219 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEe------------eeeEEcCCCccCC--
Confidence 124455444 444566653 22 3444444444444431111111 1123445522111
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHHhCCC
Q psy3968 604 FQAYSLGLGEFFEDVKKAYREANLLLGD 631 (1080)
Q Consensus 604 ~ql~~~g~~~~~~ev~~~~~~vr~~lG~ 631 (1080)
.. .-..++.++.+...|..+-+
T Consensus 220 -----~~-~~s~~~~~~~ia~~r~~lp~ 241 (296)
T TIGR00433 220 -----NK-ELSADDALKTIALARIIMPK 241 (296)
T ss_pred -----CC-CCCHHHHHHHHHHHHHHCCc
Confidence 11 12467888999999999854
No 445
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=30.37 E-value=51 Score=40.00 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=37.9
Q ss_pred cChHHHHHHHHHHHHHCCCCc----eEEeeCCCCch-------hHHHHHHHHHcCCCEEeeccCCCCCCCCCCc
Q psy3968 475 LKPRAAKLLIGAIREKHPDIP----IHIHTHDTSGA-------GVASMIACAEAGADVVDVAVDSMSGMTSQPS 537 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~----i~~H~H~t~Gl-------a~an~l~Ai~aG~~~vd~s~~glg~~~g~~~ 537 (1080)
+++.++..+.+++++.-..++ .-+-.|.|-|- .++-.++| +|+.+.=.+--|++...|-.+
T Consensus 134 ~t~~Eia~lt~AM~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~~apIVAA--~Gv~VaKhsnRaits~sGTaD 205 (500)
T TIGR03327 134 MDMDEIEWLTRAMAETGDMLSFDRHPIMDKHSIGGVPGNKISLLVVPIVAA--AGLTIPKTSSRAITSAAGTAD 205 (500)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCCCCeEEEeCCCCCCCCCEEHHHHHHHHh--CCCCeeeeCCCCcCCCccHHH
Confidence 577788888888876631121 23455666554 44444433 788888888877776666543
No 446
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=30.35 E-value=6.9e+02 Score=29.50 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred CC-CeeeeccccCccC-----hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCC
Q psy3968 462 LG-KLINTFDMAGLLK-----PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQ 535 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~-----P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~ 535 (1080)
.| +.|+|..+.|--. |.++.+.++.+.+.. ++||-+ .++||
T Consensus 152 ~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av-~vPLIL--------------------------------~gsg~ 198 (389)
T TIGR00381 152 FGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV-DVPIVI--------------------------------GGSGN 198 (389)
T ss_pred hCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC-CCCEEE--------------------------------eCCCC
Q ss_pred C-----cHHHHHHHHhc-CCCCCCCCHH-HHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHH
Q psy3968 536 P-----SMGAVVASLQG-SDIDTGLDLK-DISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYS 608 (1080)
Q Consensus 536 ~-----~~e~~v~~l~~-~g~~~~~d~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~ 608 (1080)
| -++..+..+++ ..+--..+++ .+.+++....+. +-+-+.....=-||.-.|...|.+
T Consensus 199 ~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~y---------------g~~Vvv~s~~Din~ak~Ln~kL~~ 263 (389)
T TIGR00381 199 PEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKY---------------GHVVLSWTIMDINMQKTLNRYLLK 263 (389)
T ss_pred CcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHh---------------CCeEEEEcCCcHHHHHHHHHHHHH
Q ss_pred CCCC--------------ccHHHHHHHHHHHHHh-------CCCccccCCCchhhH
Q psy3968 609 LGLG--------------EFFEDVKKAYREANLL-------LGDIIKVTPSSKVVG 643 (1080)
Q Consensus 609 ~g~~--------------~~~~ev~~~~~~vr~~-------lG~~~~VTP~Sqivg 643 (1080)
+|+. .-++..++.+.++|+- |||| .++++ +=+|
T Consensus 264 ~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraALkgD~~L~~P-ii~~~-~~~w 317 (389)
T TIGR00381 264 RGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSGLKGDTDLNMP-MSSGT-TNAW 317 (389)
T ss_pred cCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhcCCcCCCCC-eeccc-hhhh
No 447
>KOG2367|consensus
Probab=30.17 E-value=20 Score=42.34 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1016 LGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.+++.||+.|+ +.|-.|.-| .--...+|-+++.++-..+|+..+-|=| -|+-+|.
T Consensus 178 e~ikfvkslg~-----~~ieFSpEd--~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~ 233 (560)
T KOG2367|consen 178 EVIKFVKSLGK-----WDIEFSPED--FGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPN 233 (560)
T ss_pred HHHHHHHhccc-----ceEEECccc--cccCcHHHHHHHHHHHHHhCCccccCcceecccChH
Confidence 35567777776 444443122 1246788999999999999998888888 7887774
No 448
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=30.06 E-value=1.2e+02 Score=23.09 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK 114 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ 114 (1080)
+...++..|.++||++++. ..+.+++.+.+++
T Consensus 5 s~~~L~~wL~~~gi~~~~~----~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKS----AKTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCCC----CCCHHHHHHHHHH
Confidence 3467889999999999986 2678888877654
No 449
>TIGR03586 PseI pseudaminic acid synthase.
Probab=29.80 E-value=2.7e+02 Score=32.24 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCc
Q psy3968 51 ERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGR 130 (1080)
Q Consensus 51 E~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~ 130 (1080)
+...+.+.|.+.|+.|+-...+.-.. +++.+.|++.-+--+..+++.. +.+.+.+.|-|+++| .
T Consensus 78 ~~~~L~~~~~~~Gi~~~stpfd~~sv--------d~l~~~~v~~~KI~S~~~~n~~-LL~~va~~gkPvils-------t 141 (327)
T TIGR03586 78 WHKELFERAKELGLTIFSSPFDETAV--------DFLESLDVPAYKIASFEITDLP-LIRYVAKTGKPIIMS-------T 141 (327)
T ss_pred HHHHHHHHHHHhCCcEEEccCCHHHH--------HHHHHcCCCEEEECCccccCHH-HHHHHHhcCCcEEEE-------C
Q ss_pred CeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCC
Q psy3968 131 GMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIER 169 (1080)
Q Consensus 131 GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G 169 (1080)
|+ .+.+|+..+++.+.+ .|+.++.+-+.+.+
T Consensus 142 G~---~t~~Ei~~Av~~i~~-----~g~~~i~LlhC~s~ 172 (327)
T TIGR03586 142 GI---ATLEEIQEAVEACRE-----AGCKDLVLLKCTSS 172 (327)
T ss_pred CC---CCHHHHHHHHHHHHH-----CCCCcEEEEecCCC
No 450
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=29.36 E-value=47 Score=32.20 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.1
Q ss_pred HcCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCC
Q psy3968 36 ENDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGP 69 (1080)
Q Consensus 36 ~~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGp 69 (1080)
...+|.|+|. +|...|+..+...++-+++|++|+
T Consensus 83 ~~~~DvvFp~lHG~~GEDG~iQglle~~~iPYvG~ 117 (117)
T PF01820_consen 83 KLEVDVVFPVLHGPNGEDGTIQGLLELLGIPYVGC 117 (117)
T ss_dssp CTTCSEEEEECCSTTTSSSHHHHHHHHTT-EBSSS
T ss_pred cccCCEEEEeccCCCCcccHHHHHHHHcCCCCcCC
Confidence 5679999996 678889999999999999999985
No 451
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=28.85 E-value=57 Score=36.05 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=27.6
Q ss_pred CceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 950 MEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 950 m~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
-|.-|+||.+|++.. .++ +.|++||+|++++.
T Consensus 163 ~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 163 HERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred ceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 477799999999988 455 99999999999964
No 452
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=28.66 E-value=6.3e+02 Score=28.16 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc--CCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCC-
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA--GADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDT- 552 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a--G~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~- 552 (1080)
.+.++..+|+.+++.+ ++||.+-+=+ .....+|+++ |+++|+...+.- -..+.++..++++|...
T Consensus 53 E~~r~~~~v~~l~~~~-~~plsIDT~~-----~~v~eaaL~~~~G~~iINsIs~~~------~~~~~~~~l~~~~g~~vv 120 (261)
T PRK07535 53 EPETMEWLVETVQEVV-DVPLCIDSPN-----PAAIEAGLKVAKGPPLINSVSAEG------EKLEVVLPLVKKYNAPVV 120 (261)
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEeCCC-----HHHHHHHHHhCCCCCEEEeCCCCC------ccCHHHHHHHHHhCCCEE
Confidence 4667888899998877 8999876544 4556678887 999987654221 11344554444433221
Q ss_pred -------CC--CHH-HHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHH
Q psy3968 553 -------GL--DLK-DISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAY 622 (1080)
Q Consensus 553 -------~~--d~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~ 622 (1080)
|+ +.+ .+..+.+.++.+.+...+.+- .-.|+.+. |-| ++ . ...-++++.+
T Consensus 121 ~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~----IilDPgi~----~~~--~~-~---------~~~~~~l~~i 180 (261)
T PRK07535 121 ALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPED----IYIDPLVL----PLS--AA-Q---------DAGPEVLETI 180 (261)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhH----EEEeCCCC----ccc--CC-h---------HHHHHHHHHH
Confidence 11 122 234444444444433332111 11233332 111 00 1 1234678999
Q ss_pred HHHHHhC-CCccccCCCchhhH
Q psy3968 623 REANLLL-GDIIKVTPSSKVVG 643 (1080)
Q Consensus 623 ~~vr~~l-G~~~~VTP~Sqivg 643 (1080)
.++++.+ |+|.++-.|-+--|
T Consensus 181 ~~l~~~~pg~p~l~G~Sn~Sfg 202 (261)
T PRK07535 181 RRIKELYPKVHTTCGLSNISFG 202 (261)
T ss_pred HHHHHhCCCCCEEEEeCCCccC
Confidence 9999988 99999976644433
No 453
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.29 E-value=4.1e+02 Score=32.52 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=72.8
Q ss_pred CeeeeccccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHH-HHcCCCEEeeccCCCCC--------CC
Q psy3968 464 KLINTFDMAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIAC-AEAGADVVDVAVDSMSG--------MT 533 (1080)
Q Consensus 464 ~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~A-i~aG~~~vd~s~~glg~--------~~ 533 (1080)
..|.+.|-.-...+..+.++.++|.++-| ++.+...++-+.-.--...+.. .+||+..|...+-.... +.
T Consensus 241 ~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~ 320 (497)
T TIGR02026 241 GFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGT 320 (497)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCC
Confidence 36778886666788889999999987631 3333333332221111233444 37999999887766542 22
Q ss_pred CCCcHHHHHHHHhcCCCCC------CC---CHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHH
Q psy3968 534 SQPSMGAVVASLQGSDIDT------GL---DLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQF 604 (1080)
Q Consensus 534 g~~~~e~~v~~l~~~g~~~------~~---d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ 604 (1080)
..-.....+..++..|+.+ |+ +.+.+.+.-+++.+....... .......|| |.|.+
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~------------~~~~tP~PG---T~l~~ 385 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN------------WLMYTPWPF---TSLFG 385 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE------------EEEecCCCC---cHHHH
Confidence 2122334455555666643 22 344444444444443211111 112345688 77888
Q ss_pred HHHHCCCC
Q psy3968 605 QAYSLGLG 612 (1080)
Q Consensus 605 ql~~~g~~ 612 (1080)
++++.|..
T Consensus 386 ~~~~~~~~ 393 (497)
T TIGR02026 386 ELSDRVEV 393 (497)
T ss_pred HHHhhccc
Confidence 88777654
No 454
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=27.94 E-value=61 Score=38.33 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=43.5
Q ss_pred ccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee---------eeeecCceeEE
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS---------MLLRGANAVGY 979 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~---------~~v~~g~~l~~ 979 (1080)
|..-..|+-+.+.|.|-... ....++.-.+|.|..+|+|+++.+. |.|.+||+|+.
T Consensus 162 V~i~~~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 162 VGIEIKGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred EEEEEEeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 56667888888888776544 2334555688999999999999887 88999999863
No 455
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=27.88 E-value=1e+03 Score=27.65 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=55.0
Q ss_pred eeeecc-ccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCC-------CC-CC
Q psy3968 465 LINTFD-MAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMS-------GM-TS 534 (1080)
Q Consensus 465 ~i~i~D-t~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg-------~~-~g 534 (1080)
.|.+.+ |--++.|....+|+..+++.+. +..+.+=+|-+ .+.....-...++|+++|...+-++. +| -.
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~-~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~ 132 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPN-SATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHS 132 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence 677776 7778999999999999998743 44555444432 12233334444689999998888874 22 22
Q ss_pred CCcHHHHHHHHhcCCCC
Q psy3968 535 QPSMGAVVASLQGSDID 551 (1080)
Q Consensus 535 ~~~~e~~v~~l~~~g~~ 551 (1080)
.....+.+..++..|++
T Consensus 133 ~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 133 QKQIIKAIENAKKAGFE 149 (350)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 22344555666666664
No 456
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=27.77 E-value=1e+02 Score=34.75 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccC
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVD 527 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~ 527 (1080)
....+..+++.+.++. ++|+.+|. |.|........|+++|.+ ++|+|-.
T Consensus 56 ~~~~~~~~~~~~a~~~-~VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~l 106 (282)
T TIGR01858 56 GTEYIVALCSAASTTY-NMPLALHL--DHHESLDDIRQKVHAGVRSAMIDGSHF 106 (282)
T ss_pred CHHHHHHHHHHHHHHC-CCCEEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCC
Confidence 3455778888888888 79999775 556678899999999998 4676643
No 457
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.76 E-value=64 Score=36.09 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
..-+.|+|++||.|++||+|+.+|..
T Consensus 63 ~i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 63 SIEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred ceEEEEEcCCCCEeCCCCEEEEEecc
Confidence 35678999999999999999999875
No 458
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.34 E-value=2.7e+02 Score=31.35 Aligned_cols=172 Identities=15% Similarity=0.181 Sum_probs=94.7
Q ss_pred CCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccCC
Q psy3968 341 FAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQP 420 (1080)
Q Consensus 341 ~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~ 420 (1080)
..|+.+.++ ..+..+-+...+.-.+.+-+...|+. .-|+.|--..+.+.+.++. +...++. +
T Consensus 73 ~dG~~v~~g--~~i~~i~G~~~~ll~~ER~~ln~l~~--~SGIAT~T~~~v~~~~~~~-------~~i~~TR-------K 134 (277)
T PRK05742 73 ADGERVSAN--QVLFHLEGPARSLLTGERSALNFLQL--LSGVATRARHYADLVAGTQ-------VKLLDTR-------K 134 (277)
T ss_pred CCCCEEcCC--CEEEEEEEcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC-------eEEEecC-------C
Confidence 456666665 57777777666776777777777665 4588666555555554332 2223221 1
Q ss_pred cchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCC--CeeeeccccCccChHHHHHHHHHHHHHCCCCceEE
Q psy3968 421 TKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLG--KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHI 498 (1080)
Q Consensus 421 ~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G--~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~ 498 (1080)
...-.+.+..|...+- | |--+ | +| +.|-|+|-= +..-..+..-++.+|+..|+.+|++
T Consensus 135 t~Pg~R~~~k~Av~~G--G--g~~H-R--------------~~L~d~ilikdnH-i~~~g~v~~av~~~r~~~~~~~I~V 194 (277)
T PRK05742 135 TLPGLRLAQKYAVTCG--G--CHNH-R--------------IGLYDAFLIKENH-IAACGGIAQAVAAAHRIAPGKPVEV 194 (277)
T ss_pred CCCchhHHHHHHHHhc--C--Cccc-c--------------CCCcccEEecHHH-HHHhCCHHHHHHHHHHhCCCCeEEE
Confidence 1111223344432211 1 1100 0 22 355555541 0000012444677787777788999
Q ss_pred eeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcC--CCC----CCCCHHHHHHHHH
Q psy3968 499 HTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGS--DID----TGLDLKDISAYSA 564 (1080)
Q Consensus 499 H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~--g~~----~~~d~~~l~~~~~ 564 (1080)
=+|+ +.-..+|+++|+|+|-.- |.+.|++-.+.+.. ... -||+.+.+.+++.
T Consensus 195 Ev~t-----leea~eA~~~gaD~I~LD---------~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~ 252 (277)
T PRK05742 195 EVES-----LDELRQALAAGADIVMLD---------ELSLDDMREAVRLTAGRAKLEASGGINESTLRVIAE 252 (277)
T ss_pred EeCC-----HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHH
Confidence 9988 666788999999999442 55566555544422 111 2688888776543
No 459
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=27.32 E-value=1.2e+02 Score=34.44 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccCC
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVDS 528 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~g 528 (1080)
....+..+++.+.++. ++|+.+|. |.|........|+++|.+ ++|+|-.+
T Consensus 58 ~~~~~~~~~~~~a~~~-~VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 58 ALEEIYALCSAYSTTY-NMPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred CHHHHHHHHHHHHHHC-CCCEEEEC--CCCCCHHHHHHHHHcCCCeEeecCCCCC
Confidence 3455778888888888 79999775 667789999999999998 46766543
No 460
>PRK14686 hypothetical protein; Provisional
Probab=27.26 E-value=1.6e+02 Score=28.82 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCCc--------ceEEEEEEEcCCCCEEEEEEeccCCCC
Q psy3968 217 NKMTDLAVKLAKHVGYS--------NAGTVEFLCDESGQFYFIEVNARLQVE 260 (1080)
Q Consensus 217 ~~l~~~a~~i~~alg~~--------G~~~vEfivd~dG~~~~iEvNpR~~g~ 260 (1080)
..-++.|.+.++..||+ ..+.+|++...++.++|+||-+|-+..
T Consensus 9 ~~gE~~A~~~L~~~Gy~il~rN~r~~~GEIDlIa~~~~~lvFVEVKtR~~~~ 60 (119)
T PRK14686 9 KEGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSSD 60 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCCCCcEEEEECcCCEEEEEEEEecCCCC
Confidence 45567788888888873 367799999877889999999998753
No 461
>KOG2544|consensus
Probab=27.20 E-value=1.4e+02 Score=35.45 Aligned_cols=137 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh-------cC
Q psy3968 478 RAAKLLIGAIR--EKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ-------GS 548 (1080)
Q Consensus 478 ~~~~~lv~~l~--~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~-------~~ 548 (1080)
.+.--+++++| ...|.++|++.+-| .--+..|+++|||++ +-++||.+-+.+-.+++-.+ -.
T Consensus 494 rR~iP~ikavR~~~e~~~v~iSiDTy~-----S~VAkeAI~~GadIi----NDvsgG~~D~nM~~vvAe~~vpy~imHmR 564 (711)
T KOG2544|consen 494 RRLIPVIKAVRGMTEMPQVLISIDTYN-----SEVAKEAIKNGADII----NDVSGGLLDENMHKVVAESEVPYMIMHMR 564 (711)
T ss_pred HHHhHHHHHHhcccccCceeEEEechh-----hHHHHHHHhccchhe----eccccccCchhhHHHHhhcCCCEEEEecc
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-HhccCCCCccCCCCcCCcceeccCC---CCchhhcHHHHHHHCCCCccHHHHHHHHH-
Q psy3968 549 DIDTGLDLKDISAYSAYWEQT-RQLYAPFECTTTMKSGNADVYLNEI---PGGQYTNLQFQAYSLGLGEFFEDVKKAYR- 623 (1080)
Q Consensus 549 g~~~~~d~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~i---PGG~~snl~~ql~~~g~~~~~~ev~~~~~- 623 (1080)
|-.+..+-...++..+.++++ ...|..+.. .....+-.++| || .|....|++-++.+-
T Consensus 565 Gdp~TM~~l~~ye~~di~kdVa~El~eRv~~-----A~~sGv~rw~ImiDPG------------~GFaKt~kqnl~ii~~ 627 (711)
T KOG2544|consen 565 GDPCTMQNLENYEYFDICKDVAQELYERVRK-----AELSGVPRWRIMIDPG------------IGFAKTWKQNLDIIMH 627 (711)
T ss_pred CChHHHHHHhhhhHhHHHHHHHHHHHHHHHH-----HHHcCCcceEEEecCC------------cccccChhhhhhHhhh
Q ss_pred --HHHHh--------CCCccccCCCch
Q psy3968 624 --EANLL--------LGDIIKVTPSSK 640 (1080)
Q Consensus 624 --~vr~~--------lG~~~~VTP~Sq 640 (1080)
++|++ --+|+++.|+-+
T Consensus 628 lp~i~e~mak~~i~l~h~piL~GPSRK 654 (711)
T KOG2544|consen 628 LPKIREEMAKVSINLSHAPILLGPSRK 654 (711)
T ss_pred chhhHHHhcccceecccCceeeCcccc
No 462
>PRK08508 biotin synthase; Provisional
Probab=26.86 E-value=3.3e+02 Score=30.54 Aligned_cols=117 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred C-CeeeeccccCcc---ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHH-HcCCCEEeeccCCCCC-----C
Q psy3968 463 G-KLINTFDMAGLL---KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACA-EAGADVVDVAVDSMSG-----M 532 (1080)
Q Consensus 463 G-~~i~i~Dt~G~~---~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~glg~-----~ 532 (1080)
| .+|++.++.-.. .-+.+.++++.+|+..| ++|.|...|+...-.+..+ +||++.+...+-. +. -
T Consensus 56 g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p----~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt-~~~~~~~i 130 (279)
T PRK08508 56 GALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP----GLHLIACNGTASVEQLKELKKAGIFSYNHNLET-SKEFFPKI 130 (279)
T ss_pred CCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCC----CcEEEecCCCCCHHHHHHHHHcCCCEEcccccc-hHHHhcCC
Q ss_pred CCCCcHHH---HHHHHhcCCCCC--------CCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCC
Q psy3968 533 TSQPSMGA---VVASLQGSDIDT--------GLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPG 596 (1080)
Q Consensus 533 ~g~~~~e~---~v~~l~~~g~~~--------~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPG 596 (1080)
..--..++ .+..++..|+++ |-..+.+.+...+++++-....|+.. .+..||
T Consensus 131 ~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~------------~~p~~~ 193 (279)
T PRK08508 131 CTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINF------------FIPNPA 193 (279)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCC------------cCCCCC
No 463
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=26.77 E-value=42 Score=40.81 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHCC-CCceEEeeCCCCchh-HHHHHHHHHcCCCEEeeccCCC
Q psy3968 476 KPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAG-VASMIACAEAGADVVDVAVDSM 529 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla-~an~l~Ai~aG~~~vd~s~~gl 529 (1080)
...+..+++..+++.+| +.|+++. |.| ..+...|+..|||.+|++..-.
T Consensus 201 ~~~~~~~ii~~~~~~Lp~dkPryL~-----GvG~P~~i~~~V~lGvDlFD~v~ptr 251 (487)
T PRK13533 201 RYDDLVDVVLAAKRGLGPGAPVHLF-----GAGHPMMFALAVALGCDLFDSAAYAL 251 (487)
T ss_pred CHHHHHHHHHHHHhhCCCCCceEEe-----CCCCHHHHHHHHHhCCCceeccHHHH
Confidence 45778999999999885 7888774 444 5689999999999999988544
No 464
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.61 E-value=1.7e+02 Score=33.45 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHcCCChhhhccc-------------cCCccChHHHHHHHHhc----CCeEEEEEE-EecCC----CCCC
Q psy3968 985 NVVYKFCDLSVQVGMDVFRVFDS-------------LNYLPNLILGMEAAGKA----GGVVEAAIS-YTGDV----SDPS 1042 (1080)
Q Consensus 985 ~~~~~~~~~a~~~gid~~~v~~~-------------ln~~~n~~~~~~~~~~~----~~~~~~~~~-~~~~~----~~~~ 1042 (1080)
+.+.+.++.+.++||.-.-+|-- +|+-.=+..+|+.+|+. ..++..|+| ||..= .+.+
T Consensus 54 d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~~~ 133 (320)
T cd04823 54 DELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVRDG 133 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeccCC
Confidence 44556667888899987777754 33333357888988875 346677777 66430 0010
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1043 K--KKYDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1043 ~--~~~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
. .--|++.+.++|--+.++|||++|=-|
T Consensus 134 ~idND~Tl~~L~~~Avs~A~AGADiVAPSd 163 (320)
T cd04823 134 GILNDETVEVLCKQALVQAEAGADIVAPSD 163 (320)
T ss_pred cCcCHHHHHHHHHHHHHHHHhCCCEEEccc
Confidence 0 013678888888889999999998666
No 465
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=26.54 E-value=1.6e+03 Score=29.65 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEec
Q psy3968 209 PHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNA 255 (1080)
Q Consensus 209 ~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNp 255 (1080)
+.++++...++.+.+.++-+.+|. +-.|||.++ +|++|++-.-|
T Consensus 267 ~~L~~~~~~~L~~l~~~ie~~~g~--pqDIEw~~~-~~~l~ilQaRP 310 (871)
T PRK06241 267 QTLTDEQILELARLGRKIEAHFGC--PQDIEWCLA-DGTFYILQSRP 310 (871)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCC--CcceEEEEE-CCEEEEEEcCC
Confidence 358888899999999999999875 567999996 67899987544
No 466
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=26.52 E-value=1.2e+02 Score=34.66 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccCCC
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVDSM 529 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~gl 529 (1080)
....+..+++.+.++.+.+|+.+|. |.|........|+++|.+ ++|+|-.++
T Consensus 57 g~~~~~~~~~~~a~~~~~VPValHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ 110 (307)
T PRK05835 57 GIDMAVGMVKIMCERYPHIPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAF 110 (307)
T ss_pred ChHHHHHHHHHHHHhcCCCeEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 3455777888888887458998765 567779999999999998 578775444
No 467
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=26.31 E-value=5.4e+02 Score=29.60 Aligned_cols=135 Identities=14% Similarity=0.160 Sum_probs=78.4
Q ss_pred cChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCC-------CC-CCCcHHHHHHHHh
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSG-------MT-SQPSMGAVVASLQ 546 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~-------~~-g~~~~e~~v~~l~ 546 (1080)
+.| .+.++++.+++. ++.+.+.+.-+. -..+..+.+|.+.|-.|+.|.-. ++ ..-+.+.++.+|+
T Consensus 143 L~p-~l~eli~~~k~~--Gi~~~L~TNG~~----~e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~ 215 (322)
T PRK13762 143 LYP-YLPELIEEFHKR--GFTTFLVTNGTR----PDVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLE 215 (322)
T ss_pred chh-hHHHHHHHHHHc--CCCEEEECCCCC----HHHHHHHHhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 455 588999998876 567766655443 34566678899999999999842 11 1224555555554
Q ss_pred ---cCCCCC--------CCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccH
Q psy3968 547 ---GSDIDT--------GLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFF 615 (1080)
Q Consensus 547 ---~~g~~~--------~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~ 615 (1080)
..+..+ |+|...+.++++++++....+..+.. .|.+..+.+. +. ....-..
T Consensus 216 ~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~Iel~~------------y~~~G~~k~~-----l~-~~~~p~~ 277 (322)
T PRK13762 216 LLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERANPDFVEVKA------------YMHVGYSRNR-----LT-RDNMPSH 277 (322)
T ss_pred HHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcCCCEEEEEC------------CeECCCcccc-----cc-ccCCcCH
Confidence 444333 46677777777777765222111000 0111111110 11 1123456
Q ss_pred HHHHHHHHHHHHhCCCccc
Q psy3968 616 EDVKKAYREANLLLGDIIK 634 (1080)
Q Consensus 616 ~ev~~~~~~vr~~lG~~~~ 634 (1080)
+|+.+...++++..||.+.
T Consensus 278 eev~~~~~~l~~~~~~~i~ 296 (322)
T PRK13762 278 EEVREFAKELAEYTGYEIL 296 (322)
T ss_pred HHHHHHHHHHHHhcCCeEE
Confidence 8888889999999998644
No 468
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=25.99 E-value=2.1e+02 Score=30.98 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=70.3
Q ss_pred eeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHH--HHHHHHhcCCeEEEEEEEecCCCCCC-CCCC
Q psy3968 970 LLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLIL--GMEAAGKAGGVVEAAISYTGDVSDPS-KKKY 1046 (1080)
Q Consensus 970 ~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 1046 (1080)
.|..|..|..+-|.+..+..+.+.|+++|-+...|=+-.=.+.+=+. .|+-+.+.|-.+-.-+-- -+|+ ...-
T Consensus 75 ~v~pGGtlfe~a~~~~kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGk----k~~e~~~~l 150 (258)
T COG1809 75 YVFPGGTLFEIAYSQDKVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGK----KDPESDSAL 150 (258)
T ss_pred eecCCceEEEeehhcccHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcc----cCcchhhhc
Confidence 56777799999999999999999999999999999888777776554 456667776654333321 1222 1267
Q ss_pred CHHHHHHHHHHHHHcCCcEEE
Q psy3968 1047 DLKYYQNLADELVKAGTHVLC 1067 (1080)
Q Consensus 1047 ~~~~~~~~~~~~~~~g~~~~~ 1067 (1080)
+.+-.+++-.+.+++||.-+-
T Consensus 151 ~~~d~~k~i~~dvdaGa~~vi 171 (258)
T COG1809 151 SPDDRVKLINDDVDAGAEYVI 171 (258)
T ss_pred ChHHHHHHHHHHHHcchHHhh
Confidence 888899999999999986543
No 469
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.86 E-value=1.2e+02 Score=34.39 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccC
Q psy3968 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVD 527 (1080)
Q Consensus 477 P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~ 527 (1080)
...+..++..+.++. ++|+.+|. |.|........|+++|.+ ++|+|-.
T Consensus 59 ~~~~~~~~~~~a~~~-~VPValHL--DH~~~~e~i~~ai~~GftSVMiDgS~l 108 (284)
T PRK12737 59 TDYIVAIAEVAARKY-NIPLALHL--DHHEDLDDIKKKVRAGIRSVMIDGSHL 108 (284)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCC
Confidence 355778888888887 79988765 556678999999999998 4676653
No 470
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=25.83 E-value=2.5e+02 Score=31.50 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=48.2
Q ss_pred HHHHHHHHcCCChhhhc----------cccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q psy3968 989 KFCDLSVQVGMDVFRVF----------DSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADEL 1058 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~----------~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1080)
...+.+.+.|+|...+- +.++|.+.+...++++|+.= ..-|..-.+ +..+.+-..++|+.+
T Consensus 115 ~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~---~~pv~vKl~------~~~~~~~~~~~a~~l 185 (289)
T cd02810 115 ELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV---DIPLLVKLS------PYFDLEDIVELAKAA 185 (289)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc---CCCEEEEeC------CCCCHHHHHHHHHHH
Confidence 34456666788765542 12556667777788887652 222333322 356778899999999
Q ss_pred HHcCCcEEEEec
Q psy3968 1059 VKAGTHVLCIKV 1070 (1080)
Q Consensus 1059 ~~~g~~~~~~kd 1070 (1080)
.+.|+|.|++=.
T Consensus 186 ~~~Gad~i~~~~ 197 (289)
T cd02810 186 ERAGADGLTAIN 197 (289)
T ss_pred HHcCCCEEEEEc
Confidence 999999999743
No 471
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.82 E-value=5e+02 Score=29.48 Aligned_cols=202 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred cCCC--HHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCc-cCCCc
Q psy3968 268 TGVD--LVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGAS-AFAGA 344 (1080)
Q Consensus 268 tGvd--l~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~-~~~G~ 344 (1080)
++.+ .++.+++.++-+.++..+++.....+.+....+.+.+.++ +..--.......-.--++.+.+.... ...|+
T Consensus 6 ~~~~~~~~~~~i~~~l~ED~~~gDlTt~~l~~~~~~~~~~~~are~--gvlaG~~~a~~if~~l~~~~~~~~~~~~~dG~ 83 (290)
T PRK06559 6 TDLTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEA--GVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGD 83 (290)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCCCCccccCCCCCeEEEEEEecCC--eEEECHHHHHHHHHHhCCcEEEEEeecCCCCC
Q ss_pred eeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchH
Q psy3968 345 IISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNR 424 (1080)
Q Consensus 345 ~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dr 424 (1080)
.+.++ ..+..+-+...+.-.+.+-+...+.. .-|+.|--..+.+.+.++. -.-.+|+ +...-
T Consensus 84 ~v~~G--~~i~~v~G~a~~ll~~ER~alN~l~~--~SGIAT~T~~~V~~~~~~~--~~i~~TR------------KT~PG 145 (290)
T PRK06559 84 RLTSG--DLVLEIIGSVRSLLTCERVALNFLQH--LSGIASMTAAYVEALGDDR--IKVFDTR------------KTTPN 145 (290)
T ss_pred EecCC--CEEEEEEECHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC--eEEEeec------------CCCCc
Q ss_pred HHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccc----------cCccChHHHHHHHHHHHHHCC-C
Q psy3968 425 AQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDM----------AGLLKPRAAKLLIGAIREKHP-D 493 (1080)
Q Consensus 425 a~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt----------~G~~~P~~~~~lv~~l~~~~p-~ 493 (1080)
.+.+..|.-.+- |+--+ +..|.|| .| .+.+-++.+|++.| .
T Consensus 146 ~R~l~k~AV~~G----GG~~H-------------------R~gLsD~iLIkdNHi~~~g-----~i~~av~~~r~~~~~~ 197 (290)
T PRK06559 146 LRLFEKYAVRVG----GGYNH-------------------RFNLSDAIMLKDNHIAAVG-----SVQKAIAQARAYAPFV 197 (290)
T ss_pred chHHHHHHHHhc----CCccc-------------------CCCCcceEEEcHHHHHhhc-----cHHHHHHHHHHhCCCC
Q ss_pred CceEEeeCCCCchhHHHHHHHHHcCCCEE
Q psy3968 494 IPIHIHTHDTSGAGVASMIACAEAGADVV 522 (1080)
Q Consensus 494 ~~i~~H~H~t~Gla~an~l~Ai~aG~~~v 522 (1080)
.+|++-+.+ +.-..+|+++|||+|
T Consensus 198 ~kIeVEv~t-----leea~~a~~agaDiI 221 (290)
T PRK06559 198 KMVEVEVES-----LAAAEEAAAAGADII 221 (290)
T ss_pred CeEEEECCC-----HHHHHHHHHcCCCEE
No 472
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=25.67 E-value=1.8e+02 Score=31.25 Aligned_cols=56 Identities=27% Similarity=0.264 Sum_probs=35.7
Q ss_pred CCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc--CCceeEecCCCeEEeEeeee
Q psy3968 912 SVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM--KMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 912 ~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam--Km~~~i~a~~~G~v~~~~~~ 968 (1080)
.++..+.||..|+|..+---.. .+-..+.+.+.=.| ...+-++||++|+|.++...
T Consensus 51 ~~~~~i~SPaDG~v~~i~~v~d-~~~~~~~~~i~i~lsp~d~H~~~aP~~G~V~~~~~~ 108 (206)
T PRK05305 51 TDDGLVVSPADGKVVVIEEVVP-PYGDEPRLRISIFMSVFNVHVNRAPVSGTVTKVEYR 108 (206)
T ss_pred CCCCEEEeCCCcEEEEEEEECC-CccCCceEEEEEEECcccCCEEEeCccCEEEEEEEE
Confidence 4567799999999998853332 22112222222233 45578899999999987554
No 473
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=25.63 E-value=2.3e+02 Score=32.19 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=35.6
Q ss_pred cChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEee
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDV 524 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~ 524 (1080)
-.|+.+.++++++++.. ++||.+-.--+.---..-+.++.++|||.|-.
T Consensus 151 ~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 151 QDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred cCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHHcCCCEEEE
Confidence 47999999999999887 78988866543332233344577899998753
No 474
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=25.38 E-value=1.3e+02 Score=33.90 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCE--EeeccC
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADV--VDVAVD 527 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~--vd~s~~ 527 (1080)
....+..++..+.+.. ++|+.+|. |.|........|+++|.+- ||+|..
T Consensus 53 ~~~~~~~~~~~~a~~~-~VPV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l 103 (276)
T cd00947 53 GLELLVAMVKAAAERA-SVPVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHL 103 (276)
T ss_pred CHHHHHHHHHHHHHHC-CCCEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCC
Confidence 3566888888888887 89998876 4566788899999999984 566553
No 475
>PRK15452 putative protease; Provisional
Probab=25.36 E-value=1.1e+02 Score=36.99 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=41.7
Q ss_pred cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCc
Q psy3968 1012 PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKVRIL 1073 (1080)
Q Consensus 1012 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd~~~ 1073 (1080)
..|+.+++.+++.|+.+-.++- +. | --...+.+.++.++|.++|+|.|-+.|-|+
T Consensus 46 edl~eav~~ah~~g~kvyvt~n-~i----~--~e~el~~~~~~l~~l~~~gvDgvIV~d~G~ 100 (443)
T PRK15452 46 ENLALGINEAHALGKKFYVVVN-IA----P--HNAKLKTFIRDLEPVIAMKPDALIMSDPGL 100 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEec-Cc----C--CHHHHHHHHHHHHHHHhCCCCEEEEcCHHH
Confidence 5589999999999988766643 11 1 013467788999999999999999999554
No 476
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=25.26 E-value=2.2e+02 Score=32.25 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=33.4
Q ss_pred EEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 942 LVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 942 ~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
...+++ .-...+.++..|.|.+++|+ +.|..|++|+.+...
T Consensus 58 ~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 58 PGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred eeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 334555 33347889999999999999 999999999999873
No 477
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=25.18 E-value=85 Score=37.06 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=41.1
Q ss_pred ccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCc--eeEecCCCeEEeEeeee---------eeeecCceeE
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKME--MVVQAPVQGVVKSIDAS---------MLLRGANAVG 978 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~--~~i~a~~~G~v~~~~~~---------~~v~~g~~l~ 978 (1080)
|.+-..|+-+.+.|.|.....+- -|.+ ..|.|..+|+|+++.+. |.|.+||+|+
T Consensus 158 V~v~i~GTrl~i~v~Ek~~~p~~--------~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 158 AGVRVRGTTLVIKVVEKQEPKPV--------LKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred EEEEEEeEEEEEEEEecCCCCCc--------cccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 66677888888888887642111 1333 48999999999999887 8899999887
No 478
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.07 E-value=5.5e+02 Score=28.51 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCEEEeCC--------Cc--cc--ccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHH
Q psy3968 17 GLPPVEAYLNIPEIIRVAKENDVDAIHPGY--------GF--LS--ERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAAR 84 (1080)
Q Consensus 17 ~~~~~~~yld~e~Ii~~a~~~~iDaVipg~--------g~--ls--E~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r 84 (1080)
++...+++.-...+.+.+++.++..+.-|. .| +. ....+.+.+++.|++++- + ..|.....
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T-e------v~d~~~v~ 93 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS-E------IMSERQLE 93 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE-e------eCCHHHHH
Confidence 335666665566667777888888887651 11 11 124566778889999882 2 23444444
Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEE-
Q psy3968 85 QAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFI- 163 (1080)
Q Consensus 85 ~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlV- 163 (1080)
.+.+...+-..++ ..+.+.+ +.+.+.+.+.|+++|--. ..+.+|+..+++.+.+ .|+.++++
T Consensus 94 ~~~e~vdilqIgs--~~~~n~~-LL~~va~tgkPVilk~G~---------~~t~~e~~~A~e~i~~-----~Gn~~i~L~ 156 (250)
T PRK13397 94 EAYDYLDVIQVGA--RNMQNFE-FLKTLSHIDKPILFKRGL---------MATIEEYLGALSYLQD-----TGKSNIILC 156 (250)
T ss_pred HHHhcCCEEEECc--ccccCHH-HHHHHHccCCeEEEeCCC---------CCCHHHHHHHHHHHHH-----cCCCeEEEE
Confidence 4444222222233 3466654 555666779999999531 2578999998888764 35555544
Q ss_pred eeccCC
Q psy3968 164 EKFIER 169 (1080)
Q Consensus 164 EeyI~G 169 (1080)
|+-+.+
T Consensus 157 eRg~~~ 162 (250)
T PRK13397 157 ERGVRG 162 (250)
T ss_pred ccccCC
Confidence 546654
No 479
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=24.89 E-value=75 Score=36.67 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=30.6
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHh-HHHHHHHHHHH
Q psy3968 89 DSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKME-DVEENFQRASS 150 (1080)
Q Consensus 89 ~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~e-eL~~a~~~~~~ 150 (1080)
+.-++.++++ .+.+.++.....+.+. -+|+||++|.||+|+.+-.... |.++.++++..
T Consensus 263 ellL~~VpT~--~cg~~~~~~~Vl~~l~-~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~ 322 (330)
T PF04174_consen 263 ELLLPNVPTW--WCGDPEDREYVLANLD-ELVVKPADGYGGKGVYIGPKLSAERRALRAEILA 322 (330)
T ss_dssp --SSEE---E--ETTSHHHHHHHHHSGG-GEEEEE--------EEEGGG--HHHHHHHHHHHH
T ss_pred CcccCCCCcE--eCCCHHHHHHHHhchh-hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHh
Confidence 3446666663 4788888877777665 6999999999999998754333 66666666554
No 480
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.46 E-value=80 Score=35.39 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=23.6
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
+|.-++|++++|+.|++||+|+.++.
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEEE
Confidence 46778999999999999999999985
No 481
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.33 E-value=6.4e+02 Score=30.52 Aligned_cols=130 Identities=13% Similarity=0.001 Sum_probs=71.8
Q ss_pred eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCC--------CCCCCC
Q psy3968 465 LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMS--------GMTSQP 536 (1080)
Q Consensus 465 ~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg--------~~~g~~ 536 (1080)
.|.+.|-.=...+..+.++.+.|++. ++.+...++.+.--.+ .-...++|++.|...+-... .+....
T Consensus 248 ~i~f~Dd~f~~~~~~~~~l~~~l~~~--~i~~~~~~~~~~~~e~--l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~ 323 (472)
T TIGR03471 248 EFFFDDDTFTDDKPRAEEIARKLGPL--GVTWSCNARANVDYET--LKVMKENGLRLLLVGYESGDQQILKNIKKGLTVE 323 (472)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhc--CceEEEEecCCCCHHH--HHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHH
Confidence 56666644345677888999888753 5555554444332222 22333689999988776653 222111
Q ss_pred cHHHHHHHHhcCCCCC------CC---CHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHH
Q psy3968 537 SMGAVVASLQGSDIDT------GL---DLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAY 607 (1080)
Q Consensus 537 ~~e~~v~~l~~~g~~~------~~---d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~ 607 (1080)
.....+..++..|+.+ |+ +.+.+.+.-+++.++..... . .......|| |.|..+++
T Consensus 324 ~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~-----------~-~~~l~P~PG---T~l~~~~~ 388 (472)
T TIGR03471 324 IARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTI-----------Q-VSLAAPYPG---TELYDQAK 388 (472)
T ss_pred HHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCce-----------e-eeecccCCC---cHHHHHHH
Confidence 3334555555666554 22 34444444444444311100 1 112346799 89999999
Q ss_pred HCCCCc
Q psy3968 608 SLGLGE 613 (1080)
Q Consensus 608 ~~g~~~ 613 (1080)
+.|...
T Consensus 389 ~~g~~~ 394 (472)
T TIGR03471 389 QNGWIT 394 (472)
T ss_pred HCCCcC
Confidence 999753
No 482
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=23.88 E-value=93 Score=36.22 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=42.6
Q ss_pred cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHH--HHHHHHHHHHHcCCcEEEEecCC
Q psy3968 1012 PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLK--YYQNLADELVKAGTHVLCIKVRI 1072 (1080)
Q Consensus 1012 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~kd~~ 1072 (1080)
..|+.+++.++++|+.+-.|+.-.. |+.+ .+.+..+.|.++|+|.|-+=|-|
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~---------~~~~~~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLL---------HNDELETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEecccc---------ccchhhHHHHHHHHHHHcCCCEEEEcCHH
Confidence 3499999999999999988886543 4444 35899999999999999999944
No 483
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=23.84 E-value=2.6e+02 Score=32.39 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
....+.++.+++.+ ++||.+.--- .|+....+....++|+|.|+++-
T Consensus 165 ~~~le~i~~i~~~~-~vPVivK~~g-~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 165 KGWLEKIAEICSQL-SVPVIVKEVG-FGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecC-CCCCHHHHHHHHHcCCCEEEECC
Confidence 44668899999998 8999988543 47778888888899999999973
No 484
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=23.78 E-value=2.8e+02 Score=31.27 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=36.9
Q ss_pred cChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEee
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDV 524 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~ 524 (1080)
.+|..+.++++++++.+ ++||.+-.--+..-...-+..+.++|||.|+.
T Consensus 137 ~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 57899999999999987 89998876444333334455677899998865
No 485
>PRK14674 hypothetical protein; Provisional
Probab=23.75 E-value=1.6e+02 Score=29.33 Aligned_cols=43 Identities=30% Similarity=0.456 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCCc--------ceEEEEEEEcCCCCEEEEEEeccCCCC
Q psy3968 218 KMTDLAVKLAKHVGYS--------NAGTVEFLCDESGQFYFIEVNARLQVE 260 (1080)
Q Consensus 218 ~l~~~a~~i~~alg~~--------G~~~vEfivd~dG~~~~iEvNpR~~g~ 260 (1080)
.-++.|.+.++..||+ +.+.+|++...++.++|+||-.|-+..
T Consensus 10 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~~~~LVFVEVK~R~~~~ 60 (133)
T PRK14674 10 WAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGN 60 (133)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeecCCCCEeEEEEeCCEEEEEEEEecCCCC
Confidence 4566778888888874 356799998877789999999998754
No 486
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=23.61 E-value=2.4e+02 Score=33.50 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=44.3
Q ss_pred eeeecc-ccCccChHHHHHHHHHHHHHCC---CCceEEeeCCCCchhHHHHHHHH-HcCCCEEeeccCCC
Q psy3968 465 LINTFD-MAGLLKPRAAKLLIGAIREKHP---DIPIHIHTHDTSGAGVASMIACA-EAGADVVDVAVDSM 529 (1080)
Q Consensus 465 ~i~i~D-t~G~~~P~~~~~lv~~l~~~~p---~~~i~~H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~gl 529 (1080)
+|.+.+ |.-++.|..+.++++.+++.++ +..+.+-++ .+.-....+.++ ++|+++|...+-.+
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~--P~~lt~e~l~~l~~~GvnrislGvQS~ 136 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEID--PGTFDLEQLQGYRSLGVNRVSLGVQAF 136 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeC--CCcCCHHHHHHHHHCCCCEEEEEcccC
Confidence 777765 7778899999999999998874 234444443 222233444444 58999999988766
No 487
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=23.61 E-value=1.7e+02 Score=31.04 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 992 DLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 992 ~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
+.+.+.|.|... |.+.....++...++.+++.|+.+...+ ++| .| ..+.++++.+.|+|.+++
T Consensus 70 ~~~~~~Gad~i~-vh~~~~~~~~~~~i~~~~~~g~~~~~~~------~~~----~t---~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 70 EQAFAAGADIVT-VLGVADDATIKGAVKAAKKHGKEVQVDL------INV----KD---KVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHcCCCEEE-EeccCCHHHHHHHHHHHHHcCCEEEEEe------cCC----CC---hHHHHHHHHHcCCCEEEE
Confidence 456677777554 5555554566677777777777666643 111 11 334445555667777765
No 488
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.27 E-value=8.5e+02 Score=28.60 Aligned_cols=148 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred eeeecc-ccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHH-HcCCCEEeeccCCC--------CCCC
Q psy3968 465 LINTFD-MAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACA-EAGADVVDVAVDSM--------SGMT 533 (1080)
Q Consensus 465 ~i~i~D-t~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai-~aG~~~vd~s~~gl--------g~~~ 533 (1080)
+|.|.. |.-++.|..+.+++..+++.+| .-..++.+-.+.+.-....+.++ ++|+++|...+-++ |.+-
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Q ss_pred CCCcHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCc-----h
Q psy3968 534 SQPSMGAVVASLQGSDID----------TGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGG-----Q 598 (1080)
Q Consensus 534 g~~~~e~~v~~l~~~g~~----------~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG-----~ 598 (1080)
+.......+..++..|+. ++-+.+.+.+.-+.+.++...+.-+..-....+..-.-...++|.- |
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~ 220 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDI 220 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHH
Q ss_pred hhcHHHHHHHCCCC
Q psy3968 599 YTNLQFQAYSLGLG 612 (1080)
Q Consensus 599 ~snl~~ql~~~g~~ 612 (1080)
+.-...+|++.|+.
T Consensus 221 ~~~~~~~L~~~Gy~ 234 (378)
T PRK05660 221 FEQGHQLLTAAGYQ 234 (378)
T ss_pred HHHHHHHHHHcCCc
No 489
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=23.27 E-value=2.1e+02 Score=33.60 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCC
Q psy3968 480 AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529 (1080)
Q Consensus 480 ~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~gl 529 (1080)
..+.|++|++.+ +.|+-+-. . +....+..|+++|||.|++|..|-
T Consensus 224 ~w~~i~~ir~~~-~~pviiKg--V--~~~eda~~a~~~G~d~I~VSnhGG 268 (361)
T cd04736 224 NWQDLRWLRDLW-PHKLLVKG--I--VTAEDAKRCIELGADGVILSNHGG 268 (361)
T ss_pred CHHHHHHHHHhC-CCCEEEec--C--CCHHHHHHHHHCCcCEEEECCCCc
Confidence 356789999998 56766553 1 667789999999999999997664
No 490
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=23.21 E-value=74 Score=25.40 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.8
Q ss_pred EEEecCChHHHHHHHHHHhhc
Q psy3968 357 VIAHAADLQSSCAKMNRALRE 377 (1080)
Q Consensus 357 Via~G~t~~eA~~~a~ral~~ 377 (1080)
+++.|+|.++|+++++.++..
T Consensus 24 ~~t~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 24 CFTQGDTLEEALENAKEALEL 44 (48)
T ss_dssp CEEEESSHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHH
Confidence 569999999999999999864
No 491
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=23.16 E-value=2.6e+02 Score=31.72 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCC
Q psy3968 480 AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528 (1080)
Q Consensus 480 ~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~g 528 (1080)
..++++++++.+ ++|+.+..- +....+..|.++|||.|+++-.|
T Consensus 160 ~~~~i~~l~~~~-~~pvivK~v----~s~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 160 TWDDLAWLRSQW-KGPLILKGI----LTPEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred CHHHHHHHHHhc-CCCEEEeec----CCHHHHHHHHHCCCCEEEEcCCC
Confidence 346789999888 688888742 55677889999999999998543
No 492
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.02 E-value=1.7e+02 Score=33.10 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCE--Eeecc
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADV--VDVAV 526 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~--vd~s~ 526 (1080)
....+..+++.+.++. ++|+.+|. |.|.-+.....|+++|.+- +|+|-
T Consensus 58 g~~~~~~~~~~~A~~~-~vPV~lHL--DH~~~~e~i~~Ai~~GftSVM~DgS~ 107 (283)
T PRK07998 58 GYDYIYEIVKRHADKM-DVPVSLHL--DHGKTFEDVKQAVRAGFTSVMIDGAA 107 (283)
T ss_pred CHHHHHHHHHHHHHHC-CCCEEEEC--cCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 3455778888888887 89999876 4566788999999999984 56543
No 493
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=22.93 E-value=3.3e+02 Score=30.84 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=36.9
Q ss_pred cChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
..|..+.++++++|+.+ ++||.+..=.+.--...-+-.+.++|+|.|+.+
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEE
Confidence 37899999999999988 899988765433333334445678999998753
No 494
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=22.77 E-value=6.8e+02 Score=31.02 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=48.7
Q ss_pred cChHHHHHHHHHHHHHCCCC------ceEEe-----eCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHH
Q psy3968 475 LKPRAAKLLIGAIREKHPDI------PIHIH-----THDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVA 543 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~------~i~~H-----~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~ 543 (1080)
.+|+++.-+++++++....+ ++.++ ..+|.-..++.++-+..+|+.++=-...+++...| ..+++.
T Consensus 242 et~~El~g~~~a~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~G---sadvle 318 (534)
T PRK14607 242 ETADELAGFASVMREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSG---SADVLE 318 (534)
T ss_pred CCHHHHHHHHHHHHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCcc---HHHHHH
Confidence 48889999999999876322 23333 12233356777777778888887666666666655 234444
Q ss_pred HHhcCCCCCCCCHHHH
Q psy3968 544 SLQGSDIDTGLDLKDI 559 (1080)
Q Consensus 544 ~l~~~g~~~~~d~~~l 559 (1080)
.+|+....+.+..
T Consensus 319 ---~lGv~~~~~~~~~ 331 (534)
T PRK14607 319 ---ALGVKLEMTPEEA 331 (534)
T ss_pred ---HcCCCCCCCHHHH
Confidence 4566554444333
No 495
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.62 E-value=1e+03 Score=29.09 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=50.8
Q ss_pred eeeec-cccCccChHHHHHHHHHHHHHCCCC----ceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCC-------C
Q psy3968 465 LINTF-DMAGLLKPRAAKLLIGAIREKHPDI----PIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSG-------M 532 (1080)
Q Consensus 465 ~i~i~-Dt~G~~~P~~~~~lv~~l~~~~p~~----~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~-------~ 532 (1080)
.|++. .|--++.|.+..+|+..+++.+|++ .+.+=+.+-..+.-...-..-++|+++|...+-++.. +
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR 300 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR 300 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence 55554 4555678899999999999887532 2333222211222333333347899999988887752 2
Q ss_pred C-CCCcHHHHHHHHhcCCCC
Q psy3968 533 T-SQPSMGAVVASLQGSDID 551 (1080)
Q Consensus 533 ~-g~~~~e~~v~~l~~~g~~ 551 (1080)
. ........+..++..|++
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCC
Confidence 2 112334455556667764
No 496
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=22.62 E-value=95 Score=34.79 Aligned_cols=45 Identities=9% Similarity=0.126 Sum_probs=34.5
Q ss_pred ecCCCeeec-CCEEEEEEccCCceeEecCCCeEEeEeeee-eeeecCceeEEe
Q psy3968 930 VKVGDKVEK-GAALVVLSAMKMEMVVQAPVQGVVKSIDAS-MLLRGANAVGYT 980 (1080)
Q Consensus 930 v~~G~~V~~-g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-~~v~~g~~l~~~ 980 (1080)
++.|+.+.+ |++|+... ..+++||.+|+|.- .. ..+..|+..+++
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl~--~p~~~~~~G~~~~~l 272 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVLI--MPSLRPLRGQTAVRL 272 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEEE--ccCCCCCCCceeeeC
Confidence 667999999 99999954 49999999998643 23 556688877653
No 497
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=22.51 E-value=7.8e+02 Score=27.32 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 479 AAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 479 ~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
++..+|+.+++.+ ++||.+-+=+ .....+|+++|+++|..-
T Consensus 63 rl~~~v~~i~~~~-~~plSIDT~~-----~~v~e~al~~G~~iINdi 103 (257)
T cd00739 63 RVIPVLEALRGEL-DVLISVDTFR-----AEVARAALEAGADIINDV 103 (257)
T ss_pred HHHHHHHHHHhcC-CCcEEEeCCC-----HHHHHHHHHhCCCEEEeC
Confidence 4555678888776 8899876544 456678999999998754
No 498
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.28 E-value=1.7e+02 Score=33.13 Aligned_cols=47 Identities=17% Similarity=0.392 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccC
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVD 527 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~ 527 (1080)
..+..+++.+.++. .+|+.+|. |.|........|+++|.+ ++|+|-.
T Consensus 60 ~~~~~~~~~~A~~~-~VPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l 108 (284)
T PRK12857 60 EYISAMVRTAAEKA-SVPVALHL--DHGTDFEQVMKCIRNGFTSVMIDGSKL 108 (284)
T ss_pred HHHHHHHHHHHHHC-CCCEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCC
Confidence 34677788888887 78988765 556778899999999998 5677754
No 499
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.28 E-value=2.7e+02 Score=32.26 Aligned_cols=71 Identities=20% Similarity=0.378 Sum_probs=48.3
Q ss_pred HHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHH
Q psy3968 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAY 562 (1080)
Q Consensus 483 lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~ 562 (1080)
.+..|++.+ ++||++=.|.+ | ....++|+-.||++|+-=+. +=.++.+......++.+.|..+
T Consensus 185 ~I~~Lk~~f-~~pVG~SdHt~-G--~~~~~aAvalGA~iIEkH~t-------------ldk~~~G~D~~~Sl~p~el~~l 247 (329)
T TIGR03569 185 AMDTLKEAF-DLPVGYSDHTL-G--IEAPIAAVALGATVIEKHFT-------------LDKNLPGPDHKASLEPDELKEM 247 (329)
T ss_pred HHHHHHHHh-CCCEEECCCCc-c--HHHHHHHHHcCCCEEEeCCC-------------hhhcCCCCChhhcCCHHHHHHH
Confidence 367889888 79999966653 4 56779999999999985441 1122333333445788888777
Q ss_pred HHHHHHHH
Q psy3968 563 SAYWEQTR 570 (1080)
Q Consensus 563 ~~~~~~~~ 570 (1080)
.+-++.+.
T Consensus 248 v~~ir~~~ 255 (329)
T TIGR03569 248 VQGIRNVE 255 (329)
T ss_pred HHHHHHHH
Confidence 76666653
No 500
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=22.05 E-value=3.6e+02 Score=27.30 Aligned_cols=66 Identities=27% Similarity=0.387 Sum_probs=45.1
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCC
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSG 531 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~ 531 (1080)
.| +.|.+....+.. |....++++++++.+|++++..=+|.......+. ..+.|++.|...-...+.
T Consensus 83 ~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~~~~ 149 (200)
T cd04722 83 AGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGGGGG 149 (200)
T ss_pred cCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCcCCC
Confidence 45 566666665543 7888999999999887788776666554433221 578899999877654433
Done!