Query psy3968
Match_columns 1080
No_of_seqs 989 out of 6061
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:56:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbl_A Pyruvate carboxylase; T 100.0 8E-165 3E-169 1582.5 77.8 900 1-983 40-1148(1150)
2 2qf7_A Pyruvate carboxylase pr 100.0 1E-152 4E-157 1472.7 79.0 899 2-981 51-1164(1165)
3 3bg3_A Pyruvate carboxylase, m 100.0 2.9E-95 1E-99 887.3 37.9 438 465-980 277-717 (718)
4 3n6r_A Propionyl-COA carboxyla 100.0 2.3E-77 7.8E-82 738.1 46.8 412 1-417 38-470 (681)
5 3u9t_A MCC alpha, methylcroton 100.0 1E-75 3.6E-80 722.7 35.8 406 2-412 65-471 (675)
6 3jrx_A Acetyl-COA carboxylase 100.0 2.4E-68 8.3E-73 643.0 42.4 406 1-412 103-555 (587)
7 2nx9_A Oxaloacetate decarboxyl 100.0 2.4E-70 8.2E-75 640.2 18.9 294 449-755 156-458 (464)
8 3glk_A Acetyl-COA carboxylase 100.0 2.7E-67 9.3E-72 632.5 37.0 406 1-412 87-539 (540)
9 1rqb_A Transcarboxylase 5S sub 100.0 4.8E-68 1.7E-72 627.3 19.4 287 449-752 173-468 (539)
10 3ouz_A Biotin carboxylase; str 100.0 1.1E-63 3.9E-68 592.7 47.5 405 1-412 42-446 (446)
11 2dzd_A Pyruvate carboxylase; b 100.0 4.4E-58 1.5E-62 547.0 46.7 415 2-417 43-460 (461)
12 3va7_A KLLA0E08119P; carboxyla 100.0 4E-59 1.4E-63 601.5 34.6 404 1-412 67-471 (1236)
13 1ulz_A Pyruvate carboxylase N- 100.0 5.4E-57 1.9E-61 536.1 44.7 412 2-419 39-450 (451)
14 1w96_A ACC, acetyl-coenzyme A 100.0 1.1E-56 3.7E-61 545.9 42.4 405 1-411 94-552 (554)
15 2vpq_A Acetyl-COA carboxylase; 100.0 3.8E-56 1.3E-60 528.9 45.3 406 2-412 38-444 (451)
16 2w70_A Biotin carboxylase; lig 100.0 6.3E-55 2.2E-59 518.1 44.5 404 2-412 39-443 (449)
17 4dim_A Phosphoribosylglycinami 100.0 5.8E-41 2E-45 392.4 35.6 349 2-381 43-401 (403)
18 1kjq_A GART 2, phosphoribosylg 100.0 5E-37 1.7E-41 357.5 36.2 345 2-382 46-391 (391)
19 3vot_A L-amino acid ligase, BL 100.0 4.6E-37 1.6E-41 362.0 34.7 357 2-388 42-420 (425)
20 2dwc_A PH0318, 433AA long hypo 100.0 1.6E-36 5.5E-41 358.3 33.6 359 2-386 54-419 (433)
21 3mjf_A Phosphoribosylamine--gl 100.0 4.6E-36 1.6E-40 353.8 35.4 352 23-389 52-424 (431)
22 3vmm_A Alanine-anticapsin liga 100.0 2.2E-36 7.4E-41 359.8 32.8 363 2-381 67-467 (474)
23 1a9x_A Carbamoyl phosphate syn 100.0 4.5E-37 1.5E-41 398.2 29.2 359 3-398 56-432 (1073)
24 2yw2_A Phosphoribosylamine--gl 100.0 5.3E-36 1.8E-40 352.9 34.2 339 23-389 47-416 (424)
25 3aw8_A PURK, phosphoribosylami 100.0 8.4E-36 2.9E-40 344.7 35.1 325 2-379 34-361 (369)
26 3lp8_A Phosphoribosylamine-gly 100.0 3.4E-36 1.2E-40 355.8 31.0 352 23-389 68-439 (442)
27 4ffl_A PYLC; amino acid, biosy 100.0 4.1E-36 1.4E-40 346.6 29.7 321 1-380 35-357 (363)
28 2ip4_A PURD, phosphoribosylami 100.0 3E-35 1E-39 345.8 37.3 341 23-389 46-409 (417)
29 4e4t_A Phosphoribosylaminoimid 100.0 3.4E-35 1.1E-39 344.9 33.3 339 1-380 69-416 (419)
30 3k5i_A Phosphoribosyl-aminoimi 100.0 8.8E-35 3E-39 340.0 36.6 339 1-378 57-398 (403)
31 1vkz_A Phosphoribosylamine--gl 100.0 2.4E-35 8.1E-40 346.0 27.3 337 25-388 57-411 (412)
32 2qk4_A Trifunctional purine bi 100.0 1.1E-34 3.7E-39 344.6 30.4 346 23-389 73-445 (452)
33 3ax6_A Phosphoribosylaminoimid 100.0 3.7E-34 1.3E-38 332.2 33.5 332 3-383 37-373 (380)
34 2yrx_A Phosphoribosylglycinami 100.0 9.6E-34 3.3E-38 336.3 35.1 343 23-389 68-435 (451)
35 2xcl_A Phosphoribosylamine--gl 100.0 6.1E-34 2.1E-38 335.1 32.1 343 23-389 47-414 (422)
36 3q2o_A Phosphoribosylaminoimid 100.0 1.6E-32 5.3E-37 319.7 36.6 326 2-374 49-375 (389)
37 3eth_A Phosphoribosylaminoimid 100.0 7.1E-33 2.4E-37 317.2 28.5 296 38-379 42-340 (355)
38 2z04_A Phosphoribosylaminoimid 100.0 5.4E-33 1.8E-37 320.7 25.7 311 29-385 50-362 (365)
39 3orq_A N5-carboxyaminoimidazol 100.0 3.5E-32 1.2E-36 315.4 29.6 325 2-375 47-373 (377)
40 1a9x_A Carbamoyl phosphate syn 100.0 1.2E-31 4.1E-36 347.5 26.5 315 25-376 621-936 (1073)
41 1nvm_A HOA, 4-hydroxy-2-oxoval 100.0 6.8E-33 2.3E-37 316.3 9.0 177 462-653 161-340 (345)
42 2pn1_A Carbamoylphosphate synt 100.0 3.7E-29 1.3E-33 284.3 24.2 257 2-286 40-300 (331)
43 3rmj_A 2-isopropylmalate synth 100.0 1.2E-30 4E-35 298.4 6.6 219 403-626 103-370 (370)
44 4fu0_A D-alanine--D-alanine li 100.0 1.2E-28 4.3E-33 283.5 21.7 239 30-278 89-342 (357)
45 3bg3_A Pyruvate carboxylase, m 100.0 8.4E-31 2.9E-35 320.2 3.6 213 781-1077 77-290 (718)
46 3i12_A D-alanine-D-alanine lig 100.0 8E-28 2.7E-32 277.4 27.1 234 36-279 96-346 (364)
47 1ehi_A LMDDL2, D-alanine:D-lac 100.0 9.7E-28 3.3E-32 278.0 27.6 238 37-283 92-354 (377)
48 3e5n_A D-alanine-D-alanine lig 100.0 4.6E-28 1.6E-32 281.2 22.5 234 36-279 115-365 (386)
49 3tqt_A D-alanine--D-alanine li 100.0 1.1E-27 3.6E-32 276.5 23.8 233 37-279 97-347 (372)
50 3k3p_A D-alanine--D-alanine li 100.0 1.4E-27 4.9E-32 276.3 24.4 232 38-279 119-367 (383)
51 3hbl_A Pyruvate carboxylase; T 100.0 5.3E-30 1.8E-34 330.6 2.9 211 783-1077 509-721 (1150)
52 4eg0_A D-alanine--D-alanine li 100.0 2.1E-27 7.2E-32 268.7 22.7 236 35-280 62-311 (317)
53 2i87_A D-alanine-D-alanine lig 100.0 3.7E-27 1.3E-31 271.9 24.6 235 35-279 84-337 (364)
54 2ztj_A Homocitrate synthase; ( 100.0 3.4E-29 1.2E-33 288.8 7.0 166 465-651 160-333 (382)
55 2qf7_A Pyruvate carboxylase pr 99.9 2.3E-29 7.8E-34 325.5 4.5 213 781-1077 525-738 (1165)
56 3ble_A Citramalate synthase fr 99.9 9.6E-29 3.3E-33 280.6 8.6 157 442-602 160-322 (337)
57 3lwb_A D-alanine--D-alanine li 99.9 3.7E-27 1.3E-31 272.4 21.1 234 38-282 109-367 (373)
58 2fb9_A D-alanine:D-alanine lig 99.9 6.9E-27 2.3E-31 265.2 21.3 231 36-279 74-316 (322)
59 3se7_A VANA; alpha-beta struct 99.9 5.7E-27 2E-31 268.5 17.9 232 36-279 88-336 (346)
60 1e4e_A Vancomycin/teicoplanin 99.9 2.4E-26 8.3E-31 263.0 21.3 233 36-280 88-337 (343)
61 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 7.6E-26 2.6E-30 253.8 24.2 231 36-280 52-302 (306)
62 3r5x_A D-alanine--D-alanine li 99.9 5.2E-26 1.8E-30 255.8 22.5 232 35-280 52-295 (307)
63 2pvp_A D-alanine-D-alanine lig 99.9 1.1E-25 3.8E-30 259.4 19.7 231 38-285 107-349 (367)
64 3ewb_X 2-isopropylmalate synth 99.9 3.2E-27 1.1E-31 262.7 6.3 138 440-577 139-285 (293)
65 3eeg_A 2-isopropylmalate synth 99.9 2.6E-27 9.1E-32 266.9 5.6 137 440-576 140-285 (325)
66 1ydo_A HMG-COA lyase; TIM-barr 99.9 5.6E-27 1.9E-31 262.4 7.9 137 439-575 145-289 (307)
67 3ivs_A Homocitrate synthase, m 99.9 9.8E-27 3.4E-31 268.1 2.3 170 442-614 171-375 (423)
68 1uc8_A LYSX, lysine biosynthes 99.9 2.1E-24 7.2E-29 238.6 16.7 229 37-283 47-278 (280)
69 3hq1_A 2-isopropylmalate synth 99.9 2E-25 6.8E-30 266.3 8.1 191 377-570 137-356 (644)
70 2cw6_A Hydroxymethylglutaryl-C 99.9 3.9E-25 1.3E-29 247.6 8.7 137 439-575 144-288 (298)
71 2ftp_A Hydroxymethylglutaryl-C 99.9 6.8E-25 2.3E-29 245.9 7.9 135 440-574 148-290 (302)
72 3dxi_A Putative aldolase; TIM 99.9 8.2E-25 2.8E-29 244.9 8.2 146 453-600 146-296 (320)
73 3df7_A Putative ATP-grAsp supe 99.9 5E-23 1.7E-27 231.5 21.2 213 22-279 57-271 (305)
74 2nx9_A Oxaloacetate decarboxyl 99.9 6.6E-25 2.3E-29 256.7 6.0 183 803-1077 4-187 (464)
75 1rqb_A Transcarboxylase 5S sub 99.9 1.4E-24 4.7E-29 256.9 5.6 184 802-1077 20-204 (539)
76 1ydn_A Hydroxymethylglutaryl-C 99.9 2E-24 6.9E-29 241.7 6.4 139 440-578 144-290 (295)
77 2r85_A PURP protein PF1517; AT 99.9 6.8E-21 2.3E-25 216.2 24.3 204 38-260 62-291 (334)
78 2r7k_A 5-formaminoimidazole-4- 99.9 1E-20 3.4E-25 216.6 20.0 234 4-263 57-321 (361)
79 2pbz_A Hypothetical protein; N 99.8 3.9E-20 1.3E-24 207.9 3.6 214 4-260 41-272 (320)
80 3ln7_A Glutathione biosynthesi 99.8 2E-19 6.8E-24 222.4 9.2 240 25-282 433-754 (757)
81 1gsa_A Glutathione synthetase; 99.7 1.2E-17 4.2E-22 187.4 17.0 222 37-283 78-312 (316)
82 1z2n_X Inositol 1,3,4-trisphos 99.7 3.9E-17 1.3E-21 184.8 18.9 201 38-260 55-302 (324)
83 3ln6_A Glutathione biosynthesi 99.7 1.4E-17 4.7E-22 206.7 11.9 242 26-281 429-747 (750)
84 1wr2_A Hypothetical protein PH 99.7 4.7E-17 1.6E-21 176.3 12.4 178 77-259 19-219 (238)
85 1i7n_A Synapsin II; synapse, p 99.6 1.2E-14 4.2E-19 162.0 21.7 220 38-280 68-303 (309)
86 2p0a_A Synapsin-3, synapsin II 99.6 1.8E-14 6.3E-19 162.4 20.3 223 38-283 85-323 (344)
87 1pk8_A RAT synapsin I; ATP bin 99.6 3.3E-14 1.1E-18 162.9 21.2 220 38-280 180-415 (422)
88 2cqy_A Propionyl-COA carboxyla 99.6 1.2E-15 4E-20 143.8 3.9 104 75-178 4-107 (108)
89 3dxi_A Putative aldolase; TIM 99.5 1.1E-16 3.6E-21 179.3 -5.6 166 806-1077 2-172 (320)
90 2q7d_A Inositol-tetrakisphosph 99.5 4.4E-14 1.5E-18 160.9 14.5 174 62-258 100-312 (346)
91 1nvm_A HOA, 4-hydroxy-2-oxoval 99.5 9.6E-15 3.3E-19 166.5 4.9 167 804-1077 6-178 (345)
92 2kcc_A Acetyl-COA carboxylase 99.4 1.3E-13 4.5E-18 124.3 7.0 72 913-985 4-77 (84)
93 2dn8_A Acetyl-COA carboxylase 99.3 1.3E-12 4.6E-17 121.7 8.1 73 912-985 15-89 (100)
94 3crk_C Dihydrolipoyllysine-res 99.3 1.9E-12 6.5E-17 117.5 8.0 66 919-984 16-84 (87)
95 1z6h_A Biotin/lipoyl attachmen 99.3 3.4E-12 1.2E-16 111.3 8.1 68 916-983 1-70 (72)
96 1bdo_A Acetyl-COA carboxylase; 99.3 2.1E-12 7.3E-17 115.2 6.2 68 914-981 4-80 (80)
97 1ydo_A HMG-COA lyase; TIM-barr 99.3 1.8E-12 6.2E-17 144.9 7.0 85 991-1077 87-186 (307)
98 2dne_A Dihydrolipoyllysine-res 99.3 3.7E-12 1.3E-16 120.1 7.7 70 920-989 19-91 (108)
99 2ztj_A Homocitrate synthase; ( 99.3 2.1E-12 7.1E-17 148.9 7.3 79 992-1077 81-173 (382)
100 1k8m_A E2 component of branche 99.3 5E-12 1.7E-16 116.1 7.2 64 920-983 16-81 (93)
101 2dnc_A Pyruvate dehydrogenase 99.3 4.9E-12 1.7E-16 117.2 6.9 65 920-984 19-86 (98)
102 1ghj_A E2, E2, the dihydrolipo 99.3 5.2E-12 1.8E-16 112.4 6.3 64 919-982 12-77 (79)
103 3ble_A Citramalate synthase fr 99.2 6.2E-13 2.1E-17 150.8 0.1 83 990-1077 101-198 (337)
104 1dcz_A Transcarboxylase 1.3S s 99.2 1.5E-11 5.1E-16 108.7 8.7 72 910-981 4-77 (77)
105 2nu8_B SCS-beta, succinyl-COA 99.2 7.9E-12 2.7E-16 144.1 8.6 169 79-258 4-203 (388)
106 1y8o_B Dihydrolipoyllysine-res 99.2 1.2E-11 4E-16 119.7 8.1 66 921-986 40-108 (128)
107 2fp4_B Succinyl-COA ligase [GD 99.2 7.6E-12 2.6E-16 144.4 7.9 169 79-258 4-210 (395)
108 2d5d_A Methylmalonyl-COA decar 99.2 2.5E-11 8.6E-16 106.3 8.5 68 914-981 5-74 (74)
109 1gjx_A Pyruvate dehydrogenase; 99.2 7.6E-12 2.6E-16 111.9 4.5 67 917-983 10-78 (81)
110 3va7_A KLLA0E08119P; carboxyla 99.2 1.1E-11 3.8E-16 160.7 8.0 70 911-980 1164-1235(1236)
111 2l5t_A Lipoamide acyltransfera 99.2 1.1E-11 3.9E-16 109.6 5.5 64 918-981 11-76 (77)
112 2jku_A Propionyl-COA carboxyla 99.2 5E-12 1.7E-16 116.4 3.1 70 911-980 22-93 (94)
113 2ejm_A Methylcrotonoyl-COA car 99.2 4.3E-11 1.5E-15 111.3 9.2 72 912-983 12-85 (99)
114 2cw6_A Hydroxymethylglutaryl-C 99.2 1.3E-11 4.4E-16 137.9 5.3 85 991-1077 86-185 (298)
115 3ewb_X 2-isopropylmalate synth 99.2 1.8E-11 6E-16 136.0 6.2 83 987-1077 82-179 (293)
116 2ftp_A Hydroxymethylglutaryl-C 99.1 4.3E-11 1.5E-15 133.9 8.5 87 989-1077 87-188 (302)
117 1pmr_A Dihydrolipoyl succinylt 99.1 4.3E-12 1.5E-16 113.2 -0.4 64 919-982 13-78 (80)
118 3t7a_A Inositol pyrophosphate 99.1 2.5E-11 8.5E-16 131.8 5.2 197 38-259 57-292 (330)
119 3dva_I Dihydrolipoyllysine-res 99.1 1.1E-11 3.7E-16 144.4 2.3 60 922-981 16-77 (428)
120 1qjo_A Dihydrolipoamide acetyl 99.1 8.8E-11 3E-15 104.6 7.5 62 922-983 14-77 (80)
121 3eeg_A 2-isopropylmalate synth 99.1 4E-11 1.4E-15 135.1 5.4 74 996-1077 92-180 (325)
122 2k7v_A Dihydrolipoyllysine-res 99.1 1.1E-11 3.8E-16 111.9 0.5 68 916-983 4-73 (85)
123 1iyu_A E2P, dihydrolipoamide a 99.1 1.3E-10 4.6E-15 103.2 7.1 62 922-984 13-76 (79)
124 1zy8_K Pyruvate dehydrogenase 99.1 2.2E-11 7.4E-16 129.8 2.0 61 921-981 16-79 (229)
125 1ydn_A Hydroxymethylglutaryl-C 99.1 1E-10 3.5E-15 130.5 7.4 85 991-1077 85-184 (295)
126 3ufx_B Succinyl-COA synthetase 99.0 8.6E-10 3E-14 127.4 11.5 108 79-188 4-116 (397)
127 3rmj_A 2-isopropylmalate synth 98.9 1.1E-10 3.7E-15 133.5 0.5 83 987-1077 89-186 (370)
128 1zko_A Glycine cleavage system 98.9 3.1E-10 1.1E-14 110.6 3.7 69 916-984 38-116 (136)
129 1hpc_A H protein of the glycin 98.7 9.8E-09 3.3E-13 99.6 3.8 68 917-984 30-107 (131)
130 2k32_A A; NMR {Campylobacter j 98.6 3.2E-08 1.1E-12 94.5 7.1 71 916-986 3-105 (116)
131 1onl_A Glycine cleavage system 98.5 3.2E-08 1.1E-12 95.7 3.8 68 917-984 30-107 (128)
132 3a7l_A H-protein, glycine clea 98.5 4E-08 1.4E-12 95.0 3.9 69 916-984 30-108 (128)
133 3ivs_A Homocitrate synthase, m 98.4 2.1E-07 7.3E-12 107.4 7.4 78 992-1077 117-209 (423)
134 3klr_A Glycine cleavage system 97.9 1.4E-05 4.8E-10 76.4 6.1 49 920-968 29-78 (125)
135 3mxu_A Glycine cleavage system 97.6 5.1E-05 1.8E-09 73.8 6.1 65 921-985 52-126 (143)
136 3tzu_A GCVH, glycine cleavage 97.6 4.3E-05 1.5E-09 74.1 5.2 50 919-968 45-95 (137)
137 3tig_A TTL protein; ATP-grAsp, 97.5 0.00079 2.7E-08 76.6 13.8 155 116-285 147-362 (380)
138 2f1m_A Acriflavine resistance 97.4 5.7E-05 2E-09 82.9 3.1 70 915-984 23-167 (277)
139 3lnn_A Membrane fusion protein 97.4 0.00016 5.6E-09 82.3 6.6 72 914-985 57-207 (359)
140 3ne5_B Cation efflux system pr 97.3 0.00024 8.1E-09 82.7 7.5 70 915-984 122-242 (413)
141 3fpp_A Macrolide-specific effl 97.3 0.00016 5.6E-09 81.7 5.6 35 914-948 31-65 (341)
142 3cdx_A Succinylglutamatedesucc 97.2 0.0006 2.1E-08 77.6 8.2 65 916-981 269-337 (354)
143 3hgb_A Glycine cleavage system 97.1 0.00053 1.8E-08 67.5 6.1 63 922-984 58-130 (155)
144 1vf7_A Multidrug resistance pr 97.1 0.00026 8.8E-09 81.2 3.9 71 915-985 44-175 (369)
145 3na6_A Succinylglutamate desuc 96.9 0.0016 5.6E-08 73.3 8.8 69 913-982 256-328 (331)
146 1ax3_A Iiaglc, glucose permeas 96.9 0.0011 3.8E-08 66.3 6.0 86 911-1009 9-135 (162)
147 4dk0_A Putative MACA; alpha-ha 96.7 0.00021 7E-09 81.8 -0.9 36 913-948 31-66 (369)
148 2gpr_A Glucose-permease IIA co 96.5 0.0016 5.4E-08 64.7 4.2 82 915-1009 8-130 (154)
149 3mwd_A ATP-citrate synthase; A 96.4 0.0031 1E-07 73.0 6.3 109 80-188 8-134 (425)
150 1f3z_A EIIA-GLC, glucose-speci 96.4 0.0026 8.9E-08 63.5 4.8 82 915-1009 13-135 (161)
151 3fmc_A Putative succinylglutam 96.0 0.0086 2.9E-07 68.3 7.6 67 914-981 290-362 (368)
152 3pff_A ATP-citrate synthase; p 95.6 0.009 3.1E-07 74.3 5.5 107 80-188 8-134 (829)
153 3hq1_A 2-isopropylmalate synth 95.0 0.0058 2E-07 73.6 1.4 32 1046-1077 223-261 (644)
154 2l5t_A Lipoamide acyltransfera 95.0 0.019 6.4E-07 49.9 4.2 33 915-947 45-77 (77)
155 2qj8_A MLR6093 protein; struct 94.9 0.05 1.7E-06 61.1 8.6 64 917-981 260-327 (332)
156 1bdo_A Acetyl-COA carboxylase; 94.8 0.018 6.1E-07 50.4 3.6 32 915-946 49-80 (80)
157 1qjo_A Dihydrolipoamide acetyl 94.4 0.018 6.1E-07 50.4 2.5 34 914-947 43-76 (80)
158 1iyu_A E2P, dihydrolipoamide a 94.3 0.029 9.9E-07 49.0 3.8 33 915-947 42-74 (79)
159 1z6h_A Biotin/lipoyl attachmen 94.2 0.027 9.2E-07 48.0 3.4 33 915-947 37-69 (72)
160 1ghj_A E2, E2, the dihydrolipo 94.0 0.032 1.1E-06 48.7 3.3 33 915-947 45-77 (79)
161 2dn8_A Acetyl-COA carboxylase 93.9 0.026 8.8E-07 51.8 2.7 43 939-981 5-49 (100)
162 1dcz_A Transcarboxylase 1.3S s 93.6 0.041 1.4E-06 47.6 3.3 32 915-946 46-77 (77)
163 2k7v_A Dihydrolipoyllysine-res 93.5 0.028 9.6E-07 49.9 2.1 35 914-948 39-73 (85)
164 1k8m_A E2 component of branche 93.5 0.056 1.9E-06 48.9 4.2 33 915-947 48-80 (93)
165 2d5d_A Methylmalonyl-COA decar 93.3 0.056 1.9E-06 46.2 3.7 32 915-946 43-74 (74)
166 3crk_C Dihydrolipoyllysine-res 92.7 0.07 2.4E-06 47.5 3.6 33 915-947 49-82 (87)
167 2jku_A Propionyl-COA carboxyla 91.1 0.04 1.4E-06 50.0 0.0 33 914-946 62-94 (94)
168 2dnc_A Pyruvate dehydrogenase 91.1 0.1 3.6E-06 47.6 2.8 35 915-949 51-86 (98)
169 1pmr_A Dihydrolipoyl succinylt 90.7 0.038 1.3E-06 48.4 -0.5 34 914-947 45-78 (80)
170 2kcc_A Acetyl-COA carboxylase 90.6 0.11 3.7E-06 46.0 2.3 37 915-952 43-79 (84)
171 2gpr_A Glucose-permease IIA co 90.5 0.18 6E-06 50.0 4.0 52 928-980 93-153 (154)
172 1y8o_B Dihydrolipoyllysine-res 90.4 0.16 5.4E-06 48.8 3.4 36 914-949 70-106 (128)
173 2dne_A Dihydrolipoyllysine-res 90.3 0.14 4.7E-06 47.7 2.9 34 915-948 51-85 (108)
174 1gjx_A Pyruvate dehydrogenase; 89.8 0.05 1.7E-06 47.6 -0.5 34 914-947 44-77 (81)
175 1f3z_A EIIA-GLC, glucose-speci 89.8 0.22 7.4E-06 49.7 3.9 33 915-947 50-117 (161)
176 2ejm_A Methylcrotonoyl-COA car 88.3 0.21 7.1E-06 45.6 2.4 35 915-949 52-86 (99)
177 3our_B EIIA, phosphotransferas 88.0 0.78 2.7E-05 46.3 6.6 53 926-978 118-178 (183)
178 1ax3_A Iiaglc, glucose permeas 87.3 0.22 7.6E-06 49.7 2.1 20 929-948 99-118 (162)
179 2k32_A A; NMR {Campylobacter j 85.5 0.25 8.7E-06 46.2 1.4 35 914-948 67-102 (116)
180 1aj0_A DHPS, dihydropteroate s 81.7 15 0.00051 39.9 13.6 59 477-546 75-133 (282)
181 4djd_C C/Fe-SP, corrinoid/iron 81.7 11 0.00038 43.3 13.0 89 464-568 129-223 (446)
182 3d4r_A Domain of unknown funct 81.6 1.5 5.1E-05 43.2 5.0 48 919-966 105-153 (169)
183 3n6r_A Propionyl-COA carboxyla 79.4 0.97 3.3E-05 55.6 3.7 67 909-981 607-681 (681)
184 1vf7_A Multidrug resistance pr 79.2 1.2 4.2E-05 50.4 4.2 55 929-984 22-78 (369)
185 3n6x_A Putative glutathionylsp 77.5 5 0.00017 46.8 8.6 107 53-170 296-412 (474)
186 3n9r_A Fructose-bisphosphate a 77.0 14 0.00047 40.6 11.4 50 478-529 59-110 (307)
187 1tx2_A DHPS, dihydropteroate s 74.2 12 0.00041 40.9 10.1 56 480-545 103-158 (297)
188 4hb7_A Dihydropteroate synthas 72.3 22 0.00076 38.1 11.4 127 480-640 70-206 (270)
189 3fpp_A Macrolide-specific effl 72.2 2.6 8.9E-05 46.9 4.4 55 929-984 10-66 (341)
190 2f1m_A Acriflavine resistance 71.7 4.4 0.00015 43.6 5.9 43 941-984 13-57 (277)
191 3dva_I Dihydrolipoyllysine-res 71.2 0.84 2.9E-05 52.9 0.0 35 915-949 46-80 (428)
192 2io8_A Bifunctional glutathion 70.8 3.9 0.00013 49.5 5.7 119 54-192 474-599 (619)
193 2bco_A Succinylglutamate desuc 70.8 2.2 7.5E-05 48.1 3.3 60 916-980 265-326 (350)
194 4djd_D C/Fe-SP, corrinoid/iron 70.6 34 0.0012 37.7 12.7 48 476-524 113-163 (323)
195 3our_B EIIA, phosphotransferas 70.4 5.6 0.00019 40.1 5.8 48 915-966 35-86 (183)
196 1rvg_A Fructose-1,6-bisphospha 67.7 32 0.0011 37.6 11.6 47 477-527 58-106 (305)
197 3u9t_A MCC alpha, methylcroton 67.5 1.1 3.8E-05 55.0 0.0 67 911-982 599-672 (675)
198 1zy8_K Pyruvate dehydrogenase 67.4 1.1 3.8E-05 47.3 0.0 33 915-947 47-80 (229)
199 3ne5_B Cation efflux system pr 63.2 2.7 9.2E-05 48.4 2.1 34 914-947 207-240 (413)
200 3lnn_A Membrane fusion protein 62.1 5.7 0.00019 44.4 4.5 55 930-984 35-92 (359)
201 3it5_A Protease LASA; metallop 60.0 7.3 0.00025 39.5 4.4 14 915-928 49-62 (182)
202 4dk0_A Putative MACA; alpha-ha 59.8 1.9 6.6E-05 48.5 0.1 44 940-984 22-67 (369)
203 2xha_A NUSG, transcription ant 59.2 5.8 0.0002 40.4 3.4 33 927-965 22-54 (193)
204 1eye_A DHPS 1, dihydropteroate 58.8 1.3E+02 0.0046 32.3 14.5 58 478-546 67-124 (280)
205 2c6q_A GMP reductase 2; TIM ba 58.6 23 0.00077 39.7 8.6 48 476-527 144-191 (351)
206 2xha_A NUSG, transcription ant 57.4 3.9 0.00013 41.6 1.9 29 930-964 85-113 (193)
207 2h9a_A Carbon monoxide dehydro 56.6 1.4E+02 0.0049 34.3 15.0 137 464-649 129-282 (445)
208 2auk_A DNA-directed RNA polyme 55.7 8.8 0.0003 39.2 4.2 38 927-966 63-100 (190)
209 3ovp_A Ribulose-phosphate 3-ep 55.3 6.7 0.00023 41.3 3.3 67 481-555 51-118 (228)
210 1zko_A Glycine cleavage system 54.8 3.9 0.00013 39.5 1.2 34 914-947 74-114 (136)
211 2p10_A MLL9387 protein; putati 50.1 2.1E+02 0.0073 30.7 13.9 120 19-153 102-222 (286)
212 3k1t_A Glutamate--cysteine lig 48.1 11 0.00037 42.4 3.5 67 82-169 264-333 (432)
213 3paj_A Nicotinate-nucleotide p 47.8 1.1E+02 0.0037 33.7 11.5 178 340-564 114-294 (320)
214 1qpo_A Quinolinate acid phosph 47.0 57 0.0019 35.3 9.1 138 340-524 77-220 (284)
215 3tr9_A Dihydropteroate synthas 47.0 2.7E+02 0.0094 30.4 14.6 56 480-546 93-148 (314)
216 2dqw_A Dihydropteroate synthas 46.3 2.5E+02 0.0085 30.4 14.0 57 478-546 90-146 (294)
217 3txv_A Probable tagatose 6-pho 45.2 8.5 0.00029 44.2 2.3 47 475-525 242-289 (450)
218 1fob_A Beta-1,4-galactanase; B 44.9 44 0.0015 37.0 8.1 87 991-1077 33-145 (334)
219 2ekc_A AQ_1548, tryptophan syn 44.7 18 0.00061 38.7 4.7 56 465-525 176-234 (262)
220 2vef_A Dihydropteroate synthas 44.3 2.1E+02 0.0072 31.3 13.3 59 478-546 71-129 (314)
221 3inp_A D-ribulose-phosphate 3- 44.1 29 0.00098 36.9 6.0 67 482-556 75-141 (246)
222 3tuf_B Stage II sporulation pr 42.1 13 0.00045 39.4 3.0 58 916-982 95-154 (245)
223 1hjs_A Beta-1,4-galactanase; 4 41.0 55 0.0019 36.2 8.1 86 991-1076 33-143 (332)
224 3l0g_A Nicotinate-nucleotide p 40.9 2.1E+02 0.0073 31.0 12.3 177 333-564 84-270 (300)
225 1eep_A Inosine 5'-monophosphat 40.9 54 0.0018 37.3 8.2 57 462-525 164-222 (404)
226 2xhc_A Transcription antitermi 40.7 15 0.00052 41.1 3.4 34 927-966 62-95 (352)
227 2hsi_A Putative peptidase M23; 39.3 19 0.00066 39.0 3.9 15 914-928 190-204 (282)
228 3r2g_A Inosine 5'-monophosphat 38.7 59 0.002 36.4 7.8 46 477-527 125-171 (361)
229 3f4w_A Putative hexulose 6 pho 38.4 32 0.0011 34.9 5.3 67 989-1069 68-134 (211)
230 1qap_A Quinolinic acid phospho 37.2 4.2E+02 0.014 28.6 14.1 173 331-564 83-271 (296)
231 1qwy_A Peptidoglycan hydrolase 36.8 23 0.00078 38.5 3.9 60 914-982 195-258 (291)
232 3g8r_A Probable spore coat pol 36.8 29 0.001 38.7 4.9 43 483-526 184-226 (350)
233 1yxy_A Putative N-acetylmannos 36.1 1.7E+02 0.0058 30.0 10.6 47 479-530 119-165 (234)
234 1ofd_A Ferredoxin-dependent gl 35.7 51 0.0018 43.5 7.5 62 474-538 1009-1070(1520)
235 1w1z_A Delta-aminolevulinic ac 35.4 69 0.0024 34.9 7.2 86 985-1070 64-171 (328)
236 4fo4_A Inosine 5'-monophosphat 35.4 79 0.0027 35.5 8.2 50 470-524 127-176 (366)
237 3usb_A Inosine-5'-monophosphat 35.3 1.2E+02 0.004 35.7 10.1 45 476-524 280-324 (511)
238 3nyy_A Putative glycyl-glycine 34.6 30 0.001 36.8 4.4 13 916-928 141-153 (252)
239 2gu1_A Zinc peptidase; alpha/b 34.3 25 0.00087 39.4 4.0 59 914-981 242-302 (361)
240 1l6s_A Porphobilinogen synthas 34.0 36 0.0012 37.0 4.8 85 985-1070 58-165 (323)
241 2eja_A URO-D, UPD, uroporphyri 32.7 2E+02 0.0067 31.5 11.0 132 462-610 191-336 (338)
242 1ea0_A Glutamate synthase [NAD 32.6 51 0.0017 43.5 6.7 59 474-535 974-1032(1479)
243 3exr_A RMPD (hexulose-6-phosph 31.3 45 0.0015 34.6 5.0 60 482-549 47-108 (221)
244 3b0p_A TRNA-dihydrouridine syn 30.8 1.2E+02 0.004 33.7 8.7 78 987-1070 72-165 (350)
245 4fxs_A Inosine-5'-monophosphat 30.6 1E+02 0.0035 36.1 8.5 48 476-527 255-302 (496)
246 3t7v_A Methylornithine synthas 30.5 60 0.002 35.9 6.2 75 475-552 253-338 (350)
247 1qwg_A PSL synthase;, (2R)-pho 30.5 32 0.0011 36.5 3.6 97 970-1070 70-169 (251)
248 3q58_A N-acetylmannosamine-6-p 30.4 1.4E+02 0.0047 31.1 8.6 56 468-530 106-161 (229)
249 2eq8_C Pyruvate dehydrogenase 29.7 27 0.00093 25.7 2.2 27 989-1015 5-31 (40)
250 1vrd_A Inosine-5'-monophosphat 29.7 82 0.0028 36.7 7.5 48 476-527 261-308 (494)
251 2wqp_A Polysialic acid capsule 28.9 50 0.0017 36.8 5.1 40 484-526 198-237 (349)
252 3rnm_E Lipoamide acyltransfera 28.9 30 0.001 28.1 2.4 18 989-1006 13-30 (58)
253 3tqv_A Nicotinate-nucleotide p 28.7 5.7E+02 0.02 27.4 14.7 184 330-564 72-261 (287)
254 2eq7_C 2-oxoglutarate dehydrog 27.7 32 0.0011 25.3 2.3 19 990-1008 6-24 (40)
255 2vob_A Trypanothione synthetas 27.0 60 0.0021 39.4 5.7 98 55-170 488-589 (652)
256 1ur4_A Galactanase; hydrolase, 26.8 1.4E+02 0.0047 33.9 8.4 80 991-1070 54-164 (399)
257 2eq9_C Pyruvate dehydrogenase 26.7 36 0.0012 25.1 2.4 26 990-1015 7-32 (41)
258 3f4w_A Putative hexulose 6 pho 25.9 65 0.0022 32.6 5.1 67 481-553 41-107 (211)
259 3jr2_A Hexulose-6-phosphate sy 25.5 61 0.0021 33.3 4.8 65 481-553 47-113 (218)
260 3h5q_A PYNP, pyrimidine-nucleo 25.4 41 0.0014 38.7 3.6 30 916-945 340-400 (436)
261 4avf_A Inosine-5'-monophosphat 25.3 1.5E+02 0.0053 34.5 8.7 46 476-525 253-298 (490)
262 1qpo_A Quinolinate acid phosph 25.2 48 0.0017 35.9 4.0 131 922-1070 69-222 (284)
263 2dsj_A Pyrimidine-nucleoside ( 24.7 65 0.0022 36.9 5.1 80 475-560 50-139 (423)
264 1pv8_A Delta-aminolevulinic ac 24.4 70 0.0024 34.9 5.0 84 985-1070 59-169 (330)
265 1brw_A PYNP, protein (pyrimidi 24.4 43 0.0015 38.5 3.6 30 916-945 337-397 (433)
266 3iix_A Biotin synthetase, puta 24.4 89 0.003 34.2 6.2 59 1003-1068 166-227 (348)
267 1to3_A Putative aldolase YIHT; 24.2 1.4E+02 0.0047 32.5 7.5 75 992-1069 115-197 (304)
268 1z41_A YQJM, probable NADH-dep 24.2 74 0.0025 35.1 5.5 59 1009-1070 192-250 (338)
269 3sr7_A Isopentenyl-diphosphate 23.4 1.8E+02 0.006 32.6 8.3 48 478-527 192-239 (365)
270 3dz1_A Dihydrodipicolinate syn 23.4 62 0.0021 35.4 4.6 64 465-529 45-112 (313)
271 1uou_A Thymidine phosphorylase 23.1 49 0.0017 38.5 3.8 30 916-945 374-432 (474)
272 1f6y_A 5-methyltetrahydrofolat 22.8 2.6E+02 0.0087 29.7 9.1 47 474-526 51-99 (262)
273 1y0e_A Putative N-acetylmannos 22.7 2.5E+02 0.0086 28.3 8.9 47 478-529 104-150 (223)
274 3igs_A N-acetylmannosamine-6-p 22.6 2.3E+02 0.0079 29.3 8.7 55 468-529 106-160 (232)
275 1yw4_A Succinylglutamate desuc 22.4 9.9 0.00034 42.5 -2.2 56 925-980 274-334 (341)
276 3sz8_A 2-dehydro-3-deoxyphosph 22.3 78 0.0027 34.2 4.9 43 484-526 186-244 (285)
277 3gr7_A NADPH dehydrogenase; fl 22.2 68 0.0023 35.6 4.6 54 1014-1070 197-250 (340)
278 1zfj_A Inosine monophosphate d 22.2 1.7E+02 0.0058 33.9 8.3 47 476-526 257-303 (491)
279 3no5_A Uncharacterized protein 22.0 2.4E+02 0.0082 30.2 8.7 93 474-568 59-160 (275)
280 3sgz_A Hydroxyacid oxidase 2; 21.8 1.4E+02 0.0047 33.3 7.0 49 474-527 199-247 (352)
281 1jcn_A Inosine monophosphate d 21.6 1.2E+02 0.0041 35.5 6.9 47 476-526 279-325 (514)
282 3l21_A DHDPS, dihydrodipicolin 21.4 29 0.001 37.9 1.4 64 464-527 51-119 (304)
283 2h9a_B CO dehydrogenase/acetyl 21.4 3E+02 0.01 30.0 9.4 65 475-549 105-173 (310)
284 3lu0_D DNA-directed RNA polyme 21.0 72 0.0025 41.5 4.9 35 927-963 1002-1036(1407)
285 2y7e_A 3-keto-5-aminohexanoate 20.8 2E+02 0.0069 30.9 7.8 97 472-568 61-165 (282)
286 1wv2_A Thiazole moeity, thiazo 20.6 1.1E+02 0.0038 32.6 5.5 67 983-1066 86-160 (265)
287 1h7n_A 5-aminolaevulinic acid 20.6 52 0.0018 36.1 3.0 86 985-1070 69-180 (342)
288 1o4u_A Type II quinolic acid p 20.5 2.8E+02 0.0095 29.9 8.8 136 339-522 76-217 (285)
289 3nav_A Tryptophan synthase alp 20.4 87 0.003 33.6 4.8 84 466-570 180-266 (271)
290 3l0g_A Nicotinate-nucleotide p 20.4 56 0.0019 35.5 3.3 25 923-947 83-107 (300)
291 2czd_A Orotidine 5'-phosphate 20.3 75 0.0026 32.3 4.2 45 483-527 42-87 (208)
292 3paj_A Nicotinate-nucleotide p 20.2 50 0.0017 36.3 2.9 25 923-947 107-131 (320)
No 1
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=100.00 E-value=7.7e-165 Score=1582.54 Aligned_cols=900 Identities=47% Similarity=0.804 Sum_probs=821.2
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
.++|+++||++|++|++..+.++|+|++.|+++|+++++|+|||+|||++|+..+++.|++.|++++||+++++++++||
T Consensus 40 ~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK 119 (1150)
T 3hbl_A 40 SSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDK 119 (1150)
T ss_dssp TCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSH
T ss_pred cchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCH
Confidence 36899999999999876677789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+|+++...+.+.+++.++++++|||+||||..|+||+|+++|++.+|+.++++.+.+++...|+++.
T Consensus 120 ~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~ 199 (1150)
T 3hbl_A 120 VKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 199 (1150)
T ss_dssp HHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------C
T ss_pred HHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999998533678888998899999999999999999999999999999999999887766556677889
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|+++++++|++|+++++++++|+.++++++..+.+|++.++++.++++.+.+.++++++||+|++++||
T Consensus 200 vlVEeyI~G~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEf 279 (1150)
T 3hbl_A 200 VYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEF 279 (1150)
T ss_dssp BEEECCCSSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEEccCCCcEEEEEEEEeCCCCEEEEEeeccceeccCceeEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCC--CCC-CccccccCeEEEEeeeccCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPE--LGL-TQEKISPQGFAIQCRVTTEDPAKNFQP 317 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~--l~~-~~~~i~~~g~ai~~ri~ae~p~~~f~p 317 (1080)
+++++ ++||||||||++++|++++.++|+|++++++++++|.+++. +++ .|..+..+|++++||+|++||.++|.|
T Consensus 280 lvd~d-~~y~iEINpR~~g~~~vte~~tGvDlv~~~i~ia~G~~L~~~~~~~~~q~~i~~~G~ai~~Ri~aedp~~~f~P 358 (1150)
T 3hbl_A 280 LVSGD-EFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLGYAIQCRITTEDPLNDFMP 358 (1150)
T ss_dssp EEETT-EEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEECSEEGGGTSEE
T ss_pred EEECC-eEEEEEEeCCCCCCcceeehhcCCCHHHHHHHHHCCCCCCccccccccccccccceEEEEEEEeccCCccccCC
Confidence 99987 69999999999999999999999999999999999999875 344 567788899999999999999999999
Q ss_pred CCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccc
Q psy3968 318 DTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQ 397 (1080)
Q Consensus 318 ~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~ 397 (1080)
++|+|..+++|+++|+|++.+.+++|+.++++|||++|+|+++|+|+++|+++|+++|++++|+|++|||+||+++|.|+
T Consensus 359 ~~G~i~~~~~p~~~gvr~d~~~~~~G~~v~~~yds~lakvi~~g~~~~eA~~~~~~al~~~~i~G~~tn~~~~~~~~~~~ 438 (1150)
T 3hbl_A 359 DTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNK 438 (1150)
T ss_dssp CCCCCCEEECCCCTTEEEEESSCSSSCCCCTTSCCCSEEEEEEESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHHCH
T ss_pred CCceEEEEEcCCCCceeccccccccCCEeCCcCCCceeEEEEEeCCHHHHHHHHHHHHhceEEeCccCCHHHHHHHhCCH
Confidence 99999999999999999998767999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeeecCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCC------C-CCC------
Q psy3968 398 KFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEI------P-LGK------ 464 (1080)
Q Consensus 398 ~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~------~-~G~------ 464 (1080)
.|++|+++|+||+++|+||.+....+++++++.|++.++|||+. ...++..+....+.++.+ + .|+
T Consensus 439 ~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1150)
T 3hbl_A 439 KFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGFP-NVEKRPKPDYELASIPTVSSSKIASFSGTKQLLDE 517 (1150)
T ss_dssp HHHHSCCCTTHHHHCGGGGCCCCCCCHHHHHHHHHHHHHHHCCT-TSCCCCCCCCCCCCCCCCCHHHHHTCCCHHHHHHH
T ss_pred HHcCCCcccchhhCCHhhccCCCccchHHHHHHHhhheeecCCC-cccCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHh
Confidence 99999999999999999999999899999999999999999984 222222222111221111 0 121
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 518 ~~~~~~~~~~~~~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l 597 (1150)
T 3hbl_A 518 VGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERL 597 (1150)
T ss_dssp HHHHHHHHHHTTCSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHH
T ss_pred hCHHHHHHHHHhCCceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 598 ~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~irif~~~sd~~~~~~~~~~~~e~g~~~~~~i~~~ 677 (1150)
T 3hbl_A 598 ERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYT 677 (1150)
T ss_dssp HHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHhCCCCeEEEEeccccccccccCCchhHHHHHHHHHhCCcCEEEEEeeCCHHHHHHHHHHHHHHHhhheeEEEeec
Confidence
Q ss_pred ------------------------------eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHH
Q psy3968 465 ------------------------------LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIAC 514 (1080)
Q Consensus 465 ------------------------------~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~A 514 (1080)
+|+||||+|+++|.++++||+++++++ +++|++|||||+|||+||+++|
T Consensus 678 ~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA 756 (1150)
T 3hbl_A 678 GDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQA 756 (1150)
T ss_dssp SCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHH
T ss_pred ccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHH
Confidence 446999999999999999999999998 9999999999999999999999
Q ss_pred HHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCC
Q psy3968 515 AEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEI 594 (1080)
Q Consensus 515 i~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i 594 (1080)
++|||++||+|++|||||+|||+||+++++|+.+|++|++|+++|.++++||++++++|.+|+. .++++|+++|.|||
T Consensus 757 ~~aGa~~vD~ai~GlG~~~gn~~lE~lv~~L~~~g~~tgidl~~l~~~~~~~~~~~~~y~~~~~--~~~~~~~~v~~~~~ 834 (1150)
T 3hbl_A 757 IDAGVDIIDTAVASMSGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFES--DIKSPNTEIYQHEM 834 (1150)
T ss_dssp HHTTCSEEEEBCGGGCSBTSCCBHHHHHHHTTTSSCCBCSCHHHHHHHHHHHHHHHGGGGGGCC--SCCSCCTTHHHHCC
T ss_pred HHhCCCEEEEeccccCCCCCCccHHHHHHHHHhcCCCcCccHHHHHHHHHHHHHHHhhhccccC--CCCCCccceEEeeC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 47899999999999
Q ss_pred CCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHH
Q psy3968 595 PGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVE 674 (1080)
Q Consensus 595 PGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~ 674 (1080)
||||+|||++||+++|+.|||+||+++|++||++|||||||||+||||||||+|||+|+|+++++.++++|++||+||++
T Consensus 835 PGg~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~g~~~~vtp~sq~vg~~a~~~v~~~l~~~~~~~~~~~~~~~~~~~~ 914 (1150)
T 3hbl_A 835 PGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQNDLDEQSVITDGYKLDFPESVVS 914 (1150)
T ss_dssp CSSHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHHHHTTCCTTHHHHSGGGCCCCHHHHH
T ss_pred CCchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCceECchhHHHHHHHHHHHHcCCChhhhhcccccccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHHHHHHh
Q psy3968 675 FLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYLTFRES 753 (1080)
Q Consensus 675 ~~~G~~G~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~~~~~~ 753 (1080)
|++|+||+||+|||++++++||+|+++++|||+++++|.||+++|++|+++++. .+|||+|+|+|||+++.+|+++|++
T Consensus 915 ~~~G~~g~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 994 (1150)
T 3hbl_A 915 FFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEYLEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQ 994 (1150)
T ss_dssp HTTTSSCCCTTCCCHHHHHHHHTTCCCCSSCGGGGSCCCCHHHHHHHHHHHSCSCCCHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HhCcCCCCCCCCCCHHHHHHHhcCCCCccCCccccCChhhHHHHHHHHHHhhCCCCCHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998776 8999999999999999999999999
Q ss_pred cCCCCCCCccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccc
Q psy3968 754 FGPVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLK 833 (1080)
Q Consensus 754 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 833 (1080)
||+++.|||+.||+|++.||++++++++|| +++|++ .++ ++.++
T Consensus 995 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~i~l---------------------~~~----~~~~~ 1038 (1150)
T 3hbl_A 995 YGNLSLLDTPTFFFGMRNGETVEIEIDKGK-----------RLIIKL---------------------ETI----SEPDE 1038 (1150)
T ss_dssp HCCGGGSCHHHHHHCCCTTCEEEEEEETTE-----------EEEEEE---------------------EEE----CCCCT
T ss_pred cCCcccCCchhhhcCCCCCceEEEEccCCc-----------EEEEEe---------------------ccc----CCCCC
Confidence 999999999999999999999999999999 899988 443 33222
Q ss_pred cchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCC
Q psy3968 834 ISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSV 913 (1080)
Q Consensus 834 ~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1080)
. |. +++.+++||+.+.+ .+.+... ......++++++.+
T Consensus 1039 ~-----------------g~--------------~~~~~e~nG~~~~v----~v~~~~~-------~~~~~~~~~~~~~~ 1076 (1150)
T 3hbl_A 1039 N-----------------GN--------------RTIYYAMNGQARRI----YIKDENV-------HTNANVKPKADKSN 1076 (1150)
T ss_dssp T-----------------SE--------------EEEEEEETTEEEEE----EEECCCS-------SSCCCCCCBCCTTC
T ss_pred C-----------------Cc--------------eEEEEEECCeEEEE----ecccccc-------cccccccccCCCCC
Confidence 2 33 78999999999999 6766543 12223456778889
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
+++|.|||+|+|++|+|++||+|++||+|++|||||||++|+||.+|+|++++++ +.|..|++|++|+..
T Consensus 1077 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SSEEECSSSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred CceeecCceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999643
No 2
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=100.00 E-value=1.3e-152 Score=1472.71 Aligned_cols=899 Identities=46% Similarity=0.733 Sum_probs=752.8
Q ss_pred CcchhccceEEEccCC------CCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHH
Q psy3968 2 HMHRQKADESYLVGKG------LPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQ 75 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~------~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~ 75 (1080)
++|+++||++|+++++ ..+.++|+|++.|+++|+++++|+|+|++|+++|+..+++.|++.|++++||+++++.
T Consensus 51 a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~ 130 (1165)
T 2qf7_A 51 ALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMR 130 (1165)
T ss_dssp CHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHH
T ss_pred chhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHH
Confidence 5799999999999764 3456789999999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHh
Q psy3968 76 QMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAA 155 (1080)
Q Consensus 76 ~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~ 155 (1080)
+++||..+|++++++|||+|+++...+++.+++.+++++++||+||||..|+||+||++|++.+|+.++++.+.+++...
T Consensus 131 ~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~igyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~ 210 (1165)
T 2qf7_A 131 QLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAA 210 (1165)
T ss_dssp HHHSHHHHHHHHHHTTCCBC------------------------------------------------------------
T ss_pred HHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999984225788999999999999999999999999999999999999999999988877777
Q ss_pred cCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcce
Q psy3968 156 FGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNA 235 (1080)
Q Consensus 156 ~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~ 235 (1080)
|+++.++||+||+|++|++++++.|++|+++++++++|+.++++++..+.+|++.++++.++++.+.+.++++++||+|+
T Consensus 211 fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~r~~~~~~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~ 290 (1165)
T 2qf7_A 211 FGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGA 290 (1165)
T ss_dssp ---------CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEEEeecccceecccceEEecccccCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88889999999997799999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEEEEc-CCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCC--CC-CccccccCeEEEEeeeccCCC
Q psy3968 236 GTVEFLCD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPEL--GL-TQEKISPQGFAIQCRVTTEDP 311 (1080)
Q Consensus 236 ~~vEfivd-~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l--~~-~~~~i~~~g~ai~~ri~ae~p 311 (1080)
+++||+++ ++|++||||||||+++++++++.++|+|++++++++++|.++++. ++ .|..+..+|++++||+++++|
T Consensus 291 ~~vEf~vd~~dg~~~~iEiNpR~~~~~~vte~~tGiDl~~~~i~~a~G~~l~~~~~g~p~q~~~~~~g~Ai~~ri~ae~P 370 (1165)
T 2qf7_A 291 GTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQEDIRLNGHALQCRVTTEDP 370 (1165)
T ss_dssp EEEEEEEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCTTSGGGTCCCGGGCCCCSEEEEEEEESEET
T ss_pred eeEEEEEECCCCCEEEEEEEcCCCCCchhhhhhhCCCHHHHHHHHHcCCCccccccccccccccccCcEEEEEEEEecCC
Confidence 99999999 788899999999999999999999999999999999999998754 23 455567789999999999999
Q ss_pred CCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHH
Q psy3968 312 AKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLL 391 (1080)
Q Consensus 312 ~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~ 391 (1080)
.++|.|..|.|..++.|+++|+|++.+..++|+.++++||+++|+|+++|+|+++|++++++++++++|+|++|||+||+
T Consensus 371 ~~~f~p~~G~I~~~~~~~~~gvrvd~g~~~~G~~v~~~~d~~l~~vi~~g~t~~eA~~~~~~al~~i~i~G~~tni~~~~ 450 (1165)
T 2qf7_A 371 EHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDPLLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLE 450 (1165)
T ss_dssp TTTTEECCEECCEEECCCCTTEEEECCSCCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCSHHHHH
T ss_pred ccCcCCCCcEEEEEecCCCCceEeeeccCCCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEEecccCCHHHHH
Confidence 99999999999999998888999997655789999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccCCceeeeeecCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCC--CCCCCCC-----CCCC
Q psy3968 392 NVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEV--TPPVPEI-----PLGK 464 (1080)
Q Consensus 392 ~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~--~~~~~~~-----~~G~ 464 (1080)
++|.|+.|++|+++|+||+++|++|.+....+|+++++.|++.+.|||+.++.... .|... .+.++.+ +.|+
T Consensus 451 ~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 529 (1165)
T 2qf7_A 451 AIIGHPKFRDNSYTTRFIDTTPELFQQVKRQDRATKLLTYLADVTVNGHPEAKDRP-KPLENAARPVVPYANGNGVKDGT 529 (1165)
T ss_dssp HHHTSHHHHTTCCCTTTTTTCGGGGCCCCCCCHHHHHHHHHHHHHHHCCTTTTTSC-CCCSSCCCCCCCCC-CCSCCCCH
T ss_pred HHhcCHHhhcCCccchhhhcChhhhcCccccchHHHHHHHHHHheecCCCccccCC-CCCCCcCCCCCCCCCCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999976522211 11100 0111100 0010
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~v~i~DtTLRDG~Qs~~~~~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~ 609 (1165)
T 2qf7_A 530 KQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTE 609 (1165)
T ss_dssp HHHHHHHCHHHHHHHHHHCSSCEEEECTTTHHHHHHHTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCC
T ss_pred HHHHHhhCHHHHHHHhhcCCceEEEecccccccccCCcccCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy3968 465 -------------------------------------------------------------------------------- 464 (1080)
Q Consensus 465 -------------------------------------------------------------------------------- 464 (1080)
T Consensus 610 ~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~~i~~a~~~g~d~irif~sl~~~~~~~~~i~~~~~~g~~v~ 689 (1165)
T 2qf7_A 610 DPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCE 689 (1165)
T ss_dssp CHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHHTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHHHHHHHHhcCcCEEEEEeeHHHHHHHHHHHHHHHhccceEE
Confidence
Q ss_pred -----------------------------------eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHH
Q psy3968 465 -----------------------------------LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVA 509 (1080)
Q Consensus 465 -----------------------------------~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~a 509 (1080)
+|+||||+|+++|.+++++|++|++++ +++|++|||||+|||+|
T Consensus 690 ~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvA 768 (1165)
T 2qf7_A 690 AAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAA 768 (1165)
T ss_dssp EEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHH
T ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHH
Confidence 447999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcce
Q psy3968 510 SMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589 (1080)
Q Consensus 510 n~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 589 (1080)
|+++|++|||++||+|++|||||+|||+||+++++|+.+|++|++|+++|.++++||+++++.|.||+. .++++++++
T Consensus 769 n~laAv~aGa~~vd~ti~GlGe~~Gn~~le~vv~~L~~~g~~tgidl~~L~~~s~~~~~~~~~~~~~~~--~~~~~~~~v 846 (1165)
T 2qf7_A 769 TVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFES--DLKGPASEV 846 (1165)
T ss_dssp HHHHHHHTTCSEEEEBCGGGCSBTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHGGGGGGCC--CCCSCCTTH
T ss_pred HHHHHHHhCCCEEEecccccCCCccchhHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhhhccCCCC--CccCCccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 578999999
Q ss_pred eccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCc
Q psy3968 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFP 669 (1080)
Q Consensus 590 ~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~ 669 (1080)
|.|||||||+|||++||+++|+.++|++|+++|++||+++|||++|||+|||||+||+|||+|+|+.+++.++++|++||
T Consensus 847 ~~~~~pGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~vtp~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~ 926 (1165)
T 2qf7_A 847 YLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVVSPDREVSFP 926 (1165)
T ss_dssp HHHCCCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTSCCCSTTHHHHHHHHHHHHHHHTCCHHHHHCTTSCCCCC
T ss_pred EeccCCCccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHcCCCccCCChhHHHHHHHHHHHHcCCChhhhccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHH
Q psy3968 670 KSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYL 748 (1080)
Q Consensus 670 ~~~~~~~~G~~G~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~ 748 (1080)
+||++|++|+||+||+|||++++++||++++++++||+++++|.||+++++++++++++ .+|||+|+|+|||+++.+|+
T Consensus 927 ~~~~~~~~g~~g~~~~~~~~~~~~~~l~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1006 (1165)
T 2qf7_A 927 ESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSLLKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFA 1006 (1165)
T ss_dssp HHHHHHHHTTTCCCTTCCCHHHHHHHHTTCCCCCSCGGGGSCCCCHHHHHHHHHHHHTSCCCHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCcCcCCccccCCcccHHHHHHHHHHhhcCCCCHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999988766 89999999999999999999
Q ss_pred HHHHhcCCCCCCCccccccCCCCCceEEEEecCCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceeccc
Q psy3968 749 TFRESFGPVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRS 828 (1080)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 828 (1080)
++|++||+++.|||+.||+|++.+|+++|++++|| ++++++ .++
T Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk-----------~~~~~~---------------------~~~---- 1050 (1165)
T 2qf7_A 1007 LASDTYGPVSVLPTPAYFYGLADGEELFADIEKGK-----------TLVIVN---------------------QAV---- 1050 (1165)
T ss_dssp HHHHHHCCGGGSCHHHHHHCCCTTCEEEEEEETTE-----------EEEEEE---------------------EEE----
T ss_pred HHHHhcCCcccCCchhhhcCCCcCceeeecccCCc-----------cceeEe---------------------ccc----
Confidence 99999999999999999999999999999999999 888887 333
Q ss_pred ccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCC
Q psy3968 829 HDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPK 908 (1080)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~ 908 (1080)
++.++. |. +++.+++||+++.| .+.+.... ......+++
T Consensus 1051 ~~~~~~-----------------g~--------------~~~~~evnG~~~~v----~v~~~~~~------~~~~~~~~~ 1089 (1165)
T 2qf7_A 1051 SATDSQ-----------------GM--------------VTVFFELNGQPRRI----KVPDRAHG------ATGAAVRRK 1089 (1165)
T ss_dssp CCCCTT-----------------SE--------------EEEEEEETTEEEEE----EEECGGGT------CCSCCCSCB
T ss_pred CCCccC-----------------Cc--------------eEEEEEECCEEEEE----EecCcccc------ccccccccc
Confidence 222222 33 67899999999999 66554321 001122455
Q ss_pred cCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 909 ~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+++.++.+|.|||+|+|++|+|++||.|++||+|++|||||||++|+||.+|+|+++.++ +.|..|++|++|.
T Consensus 1090 a~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1090 AEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CCTTCTTEEECSSCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CCCCCCceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 667788899999999999999999999999999999999999999999999999999999 9999999999874
No 3
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=100.00 E-value=2.9e-95 Score=887.30 Aligned_cols=438 Identities=59% Similarity=0.966 Sum_probs=403.0
Q ss_pred eeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHH
Q psy3968 465 LINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVAS 544 (1080)
Q Consensus 465 ~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~ 544 (1080)
+|+||||+|+++|.+++++|++|++++|+++|++|||||+|||+||+++|++|||++||+|++|||+|+|||+||+++++
T Consensus 277 ~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti~GlGertGN~~lE~vv~~ 356 (718)
T 3bg3_A 277 ILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVAC 356 (718)
T ss_dssp EEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHH
T ss_pred EEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEecCcccccccCchhHHHHHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHH
Q psy3968 545 LQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYRE 624 (1080)
Q Consensus 545 l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~ 624 (1080)
|+.+|++|++|+++|.++++||+++++.|.||+....++++++++|.||+||||+||+++||+++|+.++|++|++++++
T Consensus 357 L~~~g~~tgidl~~L~~~s~~v~~~~~~~~~~~~~~~~~g~~~~v~~~e~pGg~~snl~~q~~~~G~~~~~~~v~~~~~~ 436 (718)
T 3bg3_A 357 TRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVE 436 (718)
T ss_dssp HTTSTTCCCCCHHHHHHHHHHHHHHHHHTGGGCGGGTCCSCCTTHHHHCCCHHHHHHHHGGGTTTSCTTHHHHHHHHHHH
T ss_pred HHhcCCCcccCHHHHHHHHHHHHHHhCCCcCCcCCccccccccceeeccCcchHHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999822357899999999999999999999999999999999999999999
Q ss_pred HHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCCCChhHHhhhhcCCCcccC
Q psy3968 625 ANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEG 704 (1080)
Q Consensus 625 vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~~~~~~~~~~l~~~~~~~~ 704 (1080)
||++||||++|||+|||||+||++||+|+|+.+++.++.+|++||+||++|++|+||+||++||++++++||++++++++
T Consensus 437 v~~~lG~~~~Vtp~Sq~vg~~A~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~p~~~~~~~~~~~l~~~~~~~~ 516 (718)
T 3bg3_A 437 ANQMLGDLIKVTPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEG 516 (718)
T ss_dssp HHHHTTSCCCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTTCCCCHHHHHHTTTSSCCCSSCCCHHHHHHHHSSSCCCCS
T ss_pred HHHHcCCCccCCcHhHHHHHHHHHHHHcCCChHHhccccccccCCHHHHHHhCcCCCCCCCCCCHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchHHHHHHHHhhCCC-CChHHHHHHhcCChhhHHHHHHHHhcCCCCCCCccccccCCCCCceEEEEecCCc
Q psy3968 705 RPGASLPPFDFGKLKTELQERHPE-ATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTGPKVGEEFEVKIQPPQ 783 (1080)
Q Consensus 705 ~p~~~~~~~~~~~~~~~l~~~~~~-~~~ed~l~~~~~p~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 783 (1080)
||+++++|.||+++++++++++++ .+|||+|+|+|||+++.+|+++|++||+++.|||+.||+|++.+|++.+++++||
T Consensus 517 rp~~~l~~~d~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~v~i~~Gk 596 (718)
T 3bg3_A 517 RPGASLPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQGPKIAEEFEVELERGK 596 (718)
T ss_dssp CHHHHSCCCCSSHHHHHHHHHTCSCCCHHHHHHHHHCHHHHHHHHHHHHHSCCCTTSCHHHHHHCCCBTCEEEEECTTSC
T ss_pred CccccCCcccHHHHHHHHHHHhccCCCHHHHHHHHhCchhHHHHHHHHHhcCCcccCcchhhhcCCCcCceeeeecccCc
Confidence 999999998999999999998765 8999999999999999999999999999999999999999999999999999999
Q ss_pred chHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheeccc
Q psy3968 784 GFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFL 863 (1080)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~ 863 (1080)
++.+++ .++ ++..+. |.
T Consensus 597 -----------~~~i~l---------------------~~i----~~~~~~-----------------g~---------- 613 (718)
T 3bg3_A 597 -----------TLHIKA---------------------LAV----SDLNRA-----------------GQ---------- 613 (718)
T ss_dssp -----------EEEEEE---------------------EEE----EEECTT-----------------SE----------
T ss_pred -----------eeEEEe---------------------ccc----CCcccC-----------------Cc----------
Confidence 888887 332 221111 33
Q ss_pred ccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEE
Q psy3968 864 HECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALV 943 (1080)
Q Consensus 864 ~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~ 943 (1080)
+++.+++||+++.+ .+.+...... ...++++++.++.+|.|||+|+|++|+|++||.|++||+|+
T Consensus 614 ----~~~~vevnG~~~~v----~v~~~~~~~~-------~~~~~~a~~~~~~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~ 678 (718)
T 3bg3_A 614 ----RQVFFELNGQLRSI----LVKDTQAMKE-------MHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLC 678 (718)
T ss_dssp ----EEEEEESSSSEEEE----EEECGGGTCC------------CCCCCSSSCEECSSCEEEEEECSCTTCCBCTTCCCE
T ss_pred ----EEEEEEECCEEEEE----EEeccCcccc-------ccccccCCCCCCceEeCCCCeEEEEEEeCCCCeeCCCCEEE
Confidence 67889999999998 5555432110 11234566667889999999999999999999999999999
Q ss_pred EEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 944 VLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 944 ~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
+|||||||++|+||.+|+|+++.++ +.|..|++|++|
T Consensus 679 ~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i 717 (718)
T 3bg3_A 679 VLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEI 717 (718)
T ss_dssp EEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECB
T ss_pred EEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEe
Confidence 9999999999999999999999999 999999999976
No 4
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=100.00 E-value=2.3e-77 Score=738.15 Aligned_cols=412 Identities=44% Similarity=0.751 Sum_probs=325.6
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|+++||+++++++. ++.++|+|.+.|+++|+++++|+|+|+|||++|+..+++.|++.|++++||++++++.++||
T Consensus 38 ~a~~~~~aD~~~~i~p~-~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK 116 (681)
T 3n6r_A 38 QALHVQMADEAVHIGPP-PANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDK 116 (681)
T ss_dssp SCHHHHHSSCCEECSSS-SGGGTTSCHHHHHHHHHHTCCSCCBCCSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSH
T ss_pred CChhHHhCCEEEEcCCC-CcccCccCHHHHHHHHHHhCcCEEEECCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCH
Confidence 47899999999999754 56689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+|+++...+.+.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+.+++...|+++.
T Consensus 117 ~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~ 196 (681)
T 3n6r_A 117 ITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDR 196 (681)
T ss_dssp HHHHHHHHTTTCCCCCC---------------------------------------------------------------
T ss_pred HHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999998544688999999999999999999999999999999999999999999999988888888899
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|++++++.|++|+++++++++|+.++++++.++.+|++.++++.++++.+.+.++++++||+|++++||
T Consensus 197 vlvEe~I~g~rei~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf 276 (681)
T 3n6r_A 197 IFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEF 276 (681)
T ss_dssp ------CCSCEEEEEEEECCSSSCCEEEEEEECCCEETTEECEEEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred EEEEeccCCCcEEEEEEEEeCCCCEEEEeeeecceeccCccEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||||||||++++|++++.++|+|++++++++++|++++ +.+..+...|+++++|+|+++|.++|.|++|
T Consensus 277 ~~d~dg~~~~lEiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~---~~~~~~~~~g~ai~~ri~aedp~~~f~p~~G 353 (681)
T 3n6r_A 277 IVDGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLS---ITQGDVKLTGWAIENRLYAEDPYRGFLPSIG 353 (681)
T ss_dssp EECTTSCCCCCEEECSCCTTHHHHHHHHTCCHHHHHHHHHTSCCCS---SCTTTCCCCSEEEEEEEESEEGGGTTEECCE
T ss_pred EEeCCCCEEEEecccccCCCcHHhHHHhCCCHHHHHHHHHCCCCCC---CCccccceeEEEEEEEEecCCcccccCCCCc
Confidence 9999899999999999999999999999999999999999999876 5677788899999999999999999999999
Q ss_pred ceEEEEcCC-c-------------------ceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEE
Q psy3968 321 RIEVFRSGE-G-------------------MGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRV 380 (1080)
Q Consensus 321 ~i~~~~~~~-~-------------------~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I 380 (1080)
++..+++|. + +|+|+|++ +++|+.++++|||++||+|++|+|+++|+++|.++|++++|
T Consensus 354 ~i~~~~~p~~~~~~~~~~~~~w~~d~~~~~~~vr~d~~-~~~g~~v~~~yd~~iak~i~~g~~r~~a~~~~~~al~~~~i 432 (681)
T 3n6r_A 354 RLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTG-VYEGGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFEV 432 (681)
T ss_dssp ECSCEECCCC--------------------CCEEEEES-CCTTCEECTTSCCEEEEEEEEESSHHHHHHHHHHHHHHCEE
T ss_pred EEEEEECCCCCcccccccccccccccccCCCcEEEEcc-ccCCCccCCCCCCceeEEEEEcCCHHHHHHHHHHHHhcCEE
Confidence 999999987 3 38999996 79999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHhcccccccCCceeeeeecCC-ccccc
Q psy3968 381 RGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN-PQLFT 417 (1080)
Q Consensus 381 ~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~-~elf~ 417 (1080)
+|++|||+||+++|.||.|++|+++|+||+++ +++|.
T Consensus 433 ~g~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~~~~~~~ 470 (681)
T 3n6r_A 433 EGIGHNLPFLSAVMDHPKFISGDMTTAFIAEEYPEGFE 470 (681)
T ss_dssp CSSCCSHHHHHHHHHCHHHHHCCCCSSHHHHHCTTSCC
T ss_pred ECccCCHHHHHHHhCCHhhccCCcccchhhhccccccC
Confidence 99999999999999999999999999999975 45444
No 5
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=100.00 E-value=1e-75 Score=722.69 Aligned_cols=406 Identities=45% Similarity=0.757 Sum_probs=374.8
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|+++||++|++++. ++..+|+|.+.|+++|+++++|+|+|+|||++|+..+++.|++.|++++||++++++.++||.
T Consensus 65 a~~~~~AD~~~~i~~~-~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~ 143 (675)
T 3u9t_A 65 ARHVAEADIAVDLGGA-KPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKS 143 (675)
T ss_dssp CHHHHTCSEEEECCCS-SGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSCCHHHHHHHTSHH
T ss_pred chhHhhCCEEEEcCCC-ccccCccCHHHHHHHHHHhCcCEEEeCCcccccCHHHHHHHHHcCCceeCCCHHHHHHhchHH
Confidence 6789999999999753 566899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.+|++++++|||+|+++...+.+.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+.+++...|+++.+
T Consensus 144 ~~k~~l~~~GVpvpp~~~~~~~s~~e~~~~a~~igyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~v 223 (675)
T 3u9t_A 144 AAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARM 223 (675)
T ss_dssp HHHHHHHHTTCCBCCCCCSCCCCTTHHHHHHHHSCSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCC
T ss_pred HHHHHHHHcCcCcCCccccCCCCHHHHHHHHHhCCCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99999999999999986445789999999999999999999999999999999999999999998887777777888899
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
++|+||+|++|+++++++|++|+++++++|+|+.++++++.++.+|++.++++.++++.+.+.++++++||+|++++||+
T Consensus 224 lvEeyI~g~reiev~v~~d~~G~vv~l~~rd~s~qr~~qk~ie~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~ 303 (675)
T 3u9t_A 224 LVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFL 303 (675)
T ss_dssp BCCBCCSSCBCEEEEEEECSSSCEEEEEEEECCCBSSSSBCEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred EEEeecCCCcEEEEEEEEcCCCCEEEEeccccceeeccceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEE
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCc
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGR 321 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~ 321 (1080)
++++|++||||||||+++++++++.++|+|++++++++++|.+++ +.+..+..+|+++++|+|+++|.++|.|++|+
T Consensus 304 ~~~dG~~~~iEiNpR~~~~~~~te~~tGvdl~~~~l~~a~G~~l~---~~~~~~~~~g~ai~~ri~aedp~~~f~P~~G~ 380 (675)
T 3u9t_A 304 LDERGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEALP---LTQEQVPLNGHAIEVRLYAEDPEGDFLPASGR 380 (675)
T ss_dssp BCTTSCBCBCEEESSCCTTHHHHHHTTTCCHHHHHHHHHTTCCCS---CCTTTCCCCSEEEEEEEESCCTTTTSCCCCCB
T ss_pred EcCCCCEEEEeccccccCCchhhhhhcCCCHHHHHHHHHCCCCCC---CCccccccCcceeEEEEEeccCcccccCCCCE
Confidence 999889999999999999999999999999999999999999886 55667788999999999999999999999999
Q ss_pred eEEEEcC-CcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 322 IEVFRSG-EGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 322 i~~~~~~-~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
+..++.| +++|+|++.+ .++|+.++++|||++|++|++|+|+++|++++.++|++++|+|++|||+||+++|.||.|+
T Consensus 381 l~~~~~p~~~~gvr~d~~-~~~G~~v~~~~ds~la~vi~~g~~r~~a~~~~~~al~~~~i~g~~tn~~~~~~~~~~~~~~ 459 (675)
T 3u9t_A 381 LMLYREAAAGPGRRVDSG-VREGDEVSPFYDPMLAKLIAWGETREEARQRLLAMLAETSVGGLRTNLAFLRRILGHPAFA 459 (675)
T ss_dssp CSEEECCCCCTTEEEEES-CCTTCBCCTTSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCTHHHHHHHHTCHHHH
T ss_pred EEEEECCCCCCCEEEEec-ccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhcEEEECccCCHHHHHHHhCCHHHh
Confidence 9999999 7899999985 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC
Q psy3968 401 NGAVDTYFIDEN 412 (1080)
Q Consensus 401 ~g~~~T~fie~~ 412 (1080)
+|+++|+||+++
T Consensus 460 ~~~~~t~~~~~~ 471 (675)
T 3u9t_A 460 AAELDTGFIARH 471 (675)
T ss_dssp TTCCCTTHHHHT
T ss_pred CCCcccchhhhc
Confidence 999999999976
No 6
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=100.00 E-value=2.4e-68 Score=643.05 Aligned_cols=406 Identities=34% Similarity=0.564 Sum_probs=358.6
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|+++||++++++++ ++.++|+|++.|+++|++.++|+|||||||++|++.+++.|++.|++|+||++++++.++||
T Consensus 103 ~a~~~~~ADe~v~i~~~-~~~~syld~~~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK 181 (587)
T 3jrx_A 103 NAEYIKMADHYVPVPGG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDK 181 (587)
T ss_dssp TCHHHHHSSEEEECCCS-SGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSH
T ss_pred CChhhHhCCEEEEeCCC-CccccccCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCH
Confidence 47899999999999754 56689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCC---------------------------CCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeE
Q psy3968 81 VAARQAAIDSGVPIVPGTP---------------------------GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMR 133 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~---------------------------~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~ 133 (1080)
..+|++++++|||+|++.. ..+.+.+++.++++++|||+||||..|+||+||+
T Consensus 182 ~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~ 261 (587)
T 3jrx_A 182 IASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIR 261 (587)
T ss_dssp HHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEE
T ss_pred HHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeE
Confidence 9999999999999999853 1278899999999999999999999999999999
Q ss_pred EECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCH
Q psy3968 134 VVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDI 213 (1080)
Q Consensus 134 iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~ 213 (1080)
+|++.+|+.++++.+.+++ .++.++||+||+|++|++|++++|++|+++++++++|++++++++.++.+|++.+++
T Consensus 262 iV~s~eEL~~a~~~a~~~~----~~~~vlVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~aPa~~l~~ 337 (587)
T 3jrx_A 262 KAESAEDFPILFRQVQSEI----PGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPL 337 (587)
T ss_dssp EECSTTTHHHHHHHHHHHS----TTCCEEEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEEESCCSSCH
T ss_pred EeCCHHHHHHHHHHHHhhc----cCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEecCCCCCCH
Confidence 9999999999999887653 257899999999999999999999999999999999999999999999999987899
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCC----
Q psy3968 214 NVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELG---- 289 (1080)
Q Consensus 214 ~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~---- 289 (1080)
+.++++.+.+.++++++||+|++++||+++++|++||+|||||+|+++++++.++|+|++++++++++|.++++++
T Consensus 338 ~~~~~i~~~A~~~a~alGy~G~~~VEfl~d~dG~~yflEINpRl~~e~~vte~~tGvdlv~~~lria~G~pL~~~~di~~ 417 (587)
T 3jrx_A 338 AIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRL 417 (587)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEECSSSCEEEEEEESSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcceeEEEEEEeCCCCEEEEEEeCCCCCccceeccccCCCHHHHHHHHHCCCCcccchhccc
Confidence 9999999999999999999999999999998899999999999999999999999999999999999999987331
Q ss_pred -------------CCccc--cccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCee
Q psy3968 290 -------------LTQEK--ISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLL 354 (1080)
Q Consensus 290 -------------~~~~~--i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l 354 (1080)
+.|.. +.++|++|+||+|+|||.++|.|++|+|+.+.+|+++++|...+....| .++++|||++
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~ghaie~Ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~-~~~~~yd~~~ 496 (587)
T 3jrx_A 418 LYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATG-GLHEFADSQF 496 (587)
T ss_dssp HTTCCTTCCCCCCSSSCSSCCCCCSEEEEEEEEC----------CCCCEEEECSSCTTEEEEECCC-----------CCE
T ss_pred ccccccccccccccccccccCCCCceEEEEeecccCccccCCCCCcEEEEEEeCCCCceEEeccccccC-CcCcccCccc
Confidence 33333 5678999999999999999999999999999999999998754434455 5899999999
Q ss_pred EEEEEecCChHHHHHHHHHHhhccEEcc-cccCHHHHHHhcccccccCCceeeeeecCC
Q psy3968 355 VKVIAHAADLQSSCAKMNRALREFRVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412 (1080)
Q Consensus 355 ~~Via~G~t~~eA~~~a~ral~~i~I~G-v~tni~~l~~il~~~~F~~g~~~T~fie~~ 412 (1080)
||||++|+||++|+++|.+||++++|+| ++|||+||+++|.|++|++|+++|+||+++
T Consensus 497 ~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~g~~~t~~~~~~ 555 (587)
T 3jrx_A 497 GHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYL 555 (587)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHSSTTSSTTHHHHHHHTSHHHHTTCSCCGGGGC-
T ss_pred ceEEEEcCCHHHHHHHHHHHHhccEEeCCCCCcHHHHHHHhCChhhccCCcchhHHhHh
Confidence 9999999999999999999999999999 899999999999999999999999999986
No 7
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=100.00 E-value=2.4e-70 Score=640.17 Aligned_cols=294 Identities=29% Similarity=0.456 Sum_probs=272.7
Q ss_pred CCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 449 LPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 449 ~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
+++++..++..+. +| ++|+||||+|+++|.+++++|+++++++ +++|++|||||+|||+||+++|++|||++||+|+
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti 234 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAI 234 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEec
Confidence 3445555555444 78 8999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHH
Q psy3968 527 DSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQA 606 (1080)
Q Consensus 527 ~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql 606 (1080)
+|||+|+||++||+++++|+.+|++|++|+++|.++++||+++++.|.||++. ++++++++|.|||||||+|||++||
T Consensus 235 ~g~gertGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~~~~--~~g~~~~v~~~~~pGg~~snl~~q~ 312 (464)
T 2nx9_A 235 SSMSGTYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHAFEGM--MKGSDARILVAQVPGGMLTNMESQL 312 (464)
T ss_dssp GGGCSTTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHTGGGCCS--CCSCCTHHHHHCCCHHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHhhcccccCC--CcCCcCCeEEecCCCchHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984 7899999999999999999999999
Q ss_pred HHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCCC
Q psy3968 607 YSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQG 686 (1080)
Q Consensus 607 ~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~~ 686 (1080)
+++|+.++|++|+++|++||+++||||+|||+|||||+||+||| |+|+| |++||+||++|++|+||+||+|
T Consensus 313 ~~~g~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~~g~~A~~~v---l~~~~------~~~~~~~~~~~~~G~~G~~p~~ 383 (464)
T 2nx9_A 313 KQQNALDKLDLVLEEIPRVREELGFLPLVTPTSQIVGTQAVINV---VLGER------YKTITKETSGVLKGEYGKTPAP 383 (464)
T ss_dssp HTTSCGGGHHHHHHHHHHHHHHTTTCCSCTTHHHHHHHHHHHHH---HTSST------TSSCCHHHHHHHTTTTCCCSSC
T ss_pred HHcCCHhHHHHHHHHHHHHHHHcCCCcccCchhHhhHHHHHHHH---HcCCc------cccCCHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999977 56776 5799999999999999999999
Q ss_pred CChhHHhhhhcCCCcccCCCCCCCCCcchHHHHHHHHhhCC---C-CCh---HHHHHHhcCChhhHHHHHHHHhcC
Q psy3968 687 FPEPLRSKVLKDMPRIEGRPGASLPPFDFGKLKTELQERHP---E-ATD---RDVMSAALYPQVTEDYLTFRESFG 755 (1080)
Q Consensus 687 ~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~---~-~~~---ed~l~~~~~p~~~~~f~~~~~~~~ 755 (1080)
||++++++||++++++++||+++++| ||++++++++++++ + .+| ||||+|+|||+++.+|+++|++|.
T Consensus 384 ~~~~~~~~~l~~~~~~~~rp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ed~l~~~~~p~~~~~~~~~~~~~~ 458 (464)
T 2nx9_A 384 VNTELQARVLAGAEAITCRPADLIAA-EMPTLQDRVLQQAKEQHITLAENAIDDVLTIALFDQVGWKFLANRHNLE 458 (464)
T ss_dssp CCHHHHHHHHTTCCCCCSCGGGSSCC-CHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHhCCCCCCCCCccccCCc-CHHHHHHHHHHHhcccccccccccHHHHHHHHcCcHHHHHHHHhhcccc
Confidence 99999999999999999999999999 99999999986643 2 677 999999999999999999998765
No 8
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=100.00 E-value=2.7e-67 Score=632.49 Aligned_cols=406 Identities=34% Similarity=0.564 Sum_probs=334.1
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|+++||++++++++ ++.++|+|++.|+++|++.++|+|||+|||++|++.+++.|++.|++++||++++++.++||
T Consensus 87 ~a~~~~~ADe~~~i~~~-~~~~sy~d~~~ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK 165 (540)
T 3glk_A 87 NAEYIKMADHYVPVPGG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDK 165 (540)
T ss_dssp TCHHHHHSSEEEECCCS-SGGGTTTCHHHHHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CH
T ss_pred CChhHHhCCEEEEeCCC-CcccccccHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCH
Confidence 47899999999999754 56689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCC---------------------------CCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeE
Q psy3968 81 VAARQAAIDSGVPIVPGTP---------------------------GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMR 133 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~---------------------------~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~ 133 (1080)
..+|++++++|||+|++.. ..+.+.+++.++++++|||+||||..|+||+||+
T Consensus 166 ~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~ 245 (540)
T 3glk_A 166 IASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIR 245 (540)
T ss_dssp HHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EE
T ss_pred HHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEE
Confidence 9999999999999999852 1178899999999999999999999999999999
Q ss_pred EECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCH
Q psy3968 134 VVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDI 213 (1080)
Q Consensus 134 iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~ 213 (1080)
+|++.+|+.++++.+.+++ .++.++||+||+|++|++|++++|++|+++++++++|+.++++++..+.+|++.+++
T Consensus 246 iv~~~~eL~~a~~~~~~~~----~~~~vlVEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~~Pa~~l~~ 321 (540)
T 3glk_A 246 KAESAEDFPILFRQVQSEI----PGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPL 321 (540)
T ss_dssp EECSTTTHHHHHHHHHHHS----TTCCEEEEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEEESCTTSCH
T ss_pred EECCHHHHHHHHHHHHhhc----cCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEecCCCCCCH
Confidence 9999999999999887653 257899999999999999999999999999999999999999999999999987899
Q ss_pred HHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCC----
Q psy3968 214 NVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELG---- 289 (1080)
Q Consensus 214 ~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~---- 289 (1080)
+.++++.+.+.++++++||+|++++||+++++|++||+|||||+|+++++++.++|+|++++++++++|.++++++
T Consensus 322 ~~~~~l~~~a~~~~~alG~~G~~~VEf~~d~dg~~~~lEiNpR~~~~~~vte~~tGvdl~~~~lr~a~G~pL~~~~~i~~ 401 (540)
T 3glk_A 322 AIFEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAAQLQIAMGVPLHRLKDIRL 401 (540)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEEETTSCEEEEEEECSCCTTHHHHHHHHTCCHHHHHHHHHTTCCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccceEEEEEEcCCCCEEEEEEECCCCCcchhhHhHhCCCHHHHHHHHHCCCCccccccccc
Confidence 9999999999999999999999999999998899999999999999999999999999999999999999987432
Q ss_pred -------------CCccc--cccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCee
Q psy3968 290 -------------LTQEK--ISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLL 354 (1080)
Q Consensus 290 -------------~~~~~--i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l 354 (1080)
+.|.. +..+|++++||+|+|||.++|.|++|+|..+++|+++|+|...+....| .++++|||++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~g~aie~ri~aedp~~~f~p~~G~i~~~~~~~~~~v~~~~~~~~~~-~~~~~yd~~~ 480 (540)
T 3glk_A 402 LYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFKPSSGTVQELNFRSSKNVWGYFSVAATG-GLHEFADSQF 480 (540)
T ss_dssp HTTCCSSCCSCCCSCCC----CCCSEEEEEEEC------------CCEEECCCSSCCSEEEEEEC-------------CE
T ss_pred ccccccccccccccccccccCCCceeEEEEEEeccCCcccccCCceEEEEEEcCCCCcEEEEeccccCC-CCCCccCccc
Confidence 22322 5678999999999999999999999999999999999998755434445 5899999999
Q ss_pred EEEEEecCChHHHHHHHHHHhhccEEcc-cccCHHHHHHhcccccccCCceeeeeecCC
Q psy3968 355 VKVIAHAADLQSSCAKMNRALREFRVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412 (1080)
Q Consensus 355 ~~Via~G~t~~eA~~~a~ral~~i~I~G-v~tni~~l~~il~~~~F~~g~~~T~fie~~ 412 (1080)
||||++|+||++|+++|.++|++++|+| ++||++||+++|.|++|++|+++|+||++.
T Consensus 481 ~k~i~~g~~r~~a~~~~~~al~~~~i~g~~~tn~~~~~~~~~~~~f~~~~~~t~~~~~~ 539 (540)
T 3glk_A 481 GHCFSWGENREEAISNMVVALKELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDYL 539 (540)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHTCC----HHHHHHHHHHHSHHHHHTCC--------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhccEEecccCCcHHHHHHHhCChhhcCCCccchhhhhc
Confidence 9999999999999999999999999999 899999999999999999999999999863
No 9
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=100.00 E-value=4.8e-68 Score=627.26 Aligned_cols=287 Identities=28% Similarity=0.394 Sum_probs=269.3
Q ss_pred CCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 449 LPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 449 ~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
+++++..++..+. +| ++|+||||+|+++|.+++++|+++++++| +++|++|||||+|||+||+++|++|||++||+|
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~VD~t 252 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTA 252 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEB
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEe
Confidence 4445555555444 78 89999999999999999999999999998 899999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHH
Q psy3968 526 VDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQ 605 (1080)
Q Consensus 526 ~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~q 605 (1080)
++|||+|+||++||+++++|+.+|++|++|+++|.++++||+++++.|.||++. +. .++++|.||+||||+||+.+|
T Consensus 253 i~g~GertGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~~~~--~~-~~~~v~~he~pGG~~Snl~~q 329 (539)
T 1rqb_A 253 ISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESK--TL-VDTSIFKSQIPGGMLSNMESQ 329 (539)
T ss_dssp CGGGCSTTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCS--CS-CCCTHHHHCCCHHHHHHHHHH
T ss_pred ccccCCCccChhHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHhCCCcCCCCC--cc-CCCceEEecCCcchhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999874 44 799999999999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhcccHHHHhhhcccccCcHHHHHhhccccCCCCC
Q psy3968 606 AYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQ 685 (1080)
Q Consensus 606 l~~~g~~~~~~ev~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~l~~~~~~~~~~~~~~~~~~~~~~~G~~G~~~~ 685 (1080)
|+++|+.++|++|+++|++||+++||||+|||+|||||+||+|||+ +|+ |++||+||++|++|+||+||+
T Consensus 330 ~~~~G~~~~~~~v~~~~~~v~~~~G~~~~VTP~Sq~vg~~A~~~v~---~~~-------~~~~~~~~~~~~~G~~G~~p~ 399 (539)
T 1rqb_A 330 LRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVM---MGE-------YKRMTGEFADIMLGYYGASPA 399 (539)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHTTCCCCCTTHHHHHHHHHHHHHH---HCT-------TSSCCHHHHHHHTTTTCCCSS
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHcCCCcccCchhhhHHHHHHHHHh---cCc-------cccCCHHHHHHhCcCCCCCCC
Confidence 9999999999999999999999999999999999999999999776 443 689999999999999999999
Q ss_pred CCChhHHhhh---hcCCCcccCCCCCCCCCcchHHHHHH---HHhhCCCCChHHHHHHhcCChhhHHHHHHHH
Q psy3968 686 GFPEPLRSKV---LKDMPRIEGRPGASLPPFDFGKLKTE---LQERHPEATDRDVMSAALYPQVTEDYLTFRE 752 (1080)
Q Consensus 686 ~~~~~~~~~~---l~~~~~~~~~p~~~~~~~~~~~~~~~---l~~~~~~~~~ed~l~~~~~p~~~~~f~~~~~ 752 (1080)
|||++++++| |++ +++++||+++++| ||++++++ +++++ .+|||||+|+|||+++.+|+++|+
T Consensus 400 ~~~~~~~~~~~~~l~~-~~~~~rp~~~l~~-~~~~~~~~~~~~~~~~--~~~ed~l~~~~~p~~~~~~~~~~~ 468 (539)
T 1rqb_A 400 DRDPKVVKLAEEQSGK-KPITQRPADLLPP-EWEKQSKEAATLKGFN--GTDEDVLTYALFPQVAPVFFEHRA 468 (539)
T ss_dssp CCCHHHHHHHHHHHCC-CCCCSCGGGGCCC-CHHHHHHHHTTSTTCC--SSHHHHHHHHHCTTTHHHHHHHGG
T ss_pred CCCHHHHHHHHHHhCC-CCCCCCccccCCc-CHHHHHHHHHHHhhhc--CCHHHHHHHHhCcHHHHHHHHhhh
Confidence 9999999999 988 8999999999999 99999999 77664 599999999999999999999996
No 10
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=100.00 E-value=1.1e-63 Score=592.66 Aligned_cols=405 Identities=45% Similarity=0.781 Sum_probs=384.4
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|.++||+++++++. +..++|+|.+.|+++|+++++|+|+|++|+++|+..+++.+++.|++++||+++++..++||
T Consensus 42 ~~~~~~~ad~~~~i~~~-~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK 120 (446)
T 3ouz_A 42 DALYLKYADASICIGKA-RSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDK 120 (446)
T ss_dssp TCTHHHHSSEEEEEECC-TTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSH
T ss_pred ccchHhhCCEEEEcCCC-CccccccCHHHHHHHHHHhCcCEEEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCH
Confidence 36899999999999753 56689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..++++|+++|||+|+++...+.+.+++.+++++++||+|+||..|+||+|+++|++.+|+.++++.+.+++...|+++.
T Consensus 121 ~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~ 200 (446)
T 3ouz_A 121 SKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGT 200 (446)
T ss_dssp HHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999998423689999999999999999999999999999999999999999999999988888888899
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|++++++.+++|+++++++++|+.++++++..+.+|++.++++..+++.+.+.++++++||+|++++||
T Consensus 201 ~lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~ 280 (446)
T 3ouz_A 201 MYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEF 280 (446)
T ss_dssp EEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEeCCCCCcEEEEEEEEcCCCCEEEEeeceeeeeecCceEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||+|||||+++++++++.++|+|++++++++++|++++ .+..+..+|+++++|+|+++| ..|.|++|
T Consensus 281 ~~~~~g~~~~iEiNpR~~g~~~~~~~~~G~dl~~~~~~~~~G~~l~----~~~~~~~~g~ai~~ri~ae~~-~~~~p~~G 355 (446)
T 3ouz_A 281 LVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALP----SQESIKLNGHSIECRITAEDS-KTFLPSPG 355 (446)
T ss_dssp EECTTCCEEEEEEESSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC----CGGGCCCCSEEEEEEEESBCT-TTCCBCCE
T ss_pred EEeCCCCEEEEEeECCCCCcceeeeeeeCCCHHHHHHHHHCCCCCC----cCCCCCcceEEEEEEeeccCC-CccCCCCc
Confidence 9998888999999999999999999999999999999999999886 345567789999999999999 99999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
++..++.|+++|+|++.+ .++|+.++++|||++|+|+++|+|+++|++++.+++++++|+|++||++||+++|.|++|+
T Consensus 356 ~i~~~~~p~~~~vr~~~~-~~~G~~v~~~~d~~~~~vi~~g~~~~~a~~~~~~al~~~~i~g~~~~~~~~~~~~~~~~~~ 434 (446)
T 3ouz_A 356 KITKYIPPAGRNVRMESH-CYQDYSVPAYYDSMIGKLVVWAEDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFI 434 (446)
T ss_dssp ECSEEECCCSTTEEEEEC-CCTTCEECTTTCCEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCTHHHHHHHHTCHHHH
T ss_pred EEeEEecCCCCCEEEEcc-cccCCEeCCccCCcceEEEEEcCCHHHHHHHHHHHHhhCEEeCccCCHHHHHHHhCChhhc
Confidence 999999999999999985 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC
Q psy3968 401 NGAVDTYFIDEN 412 (1080)
Q Consensus 401 ~g~~~T~fie~~ 412 (1080)
+|+++|+||+++
T Consensus 435 ~~~~~~~~~~~~ 446 (446)
T 3ouz_A 435 NNNYDTNYLARH 446 (446)
T ss_dssp TTCCCTTHHHHC
T ss_pred cCCccccccccC
Confidence 999999999863
No 11
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=100.00 E-value=4.4e-58 Score=547.00 Aligned_cols=415 Identities=58% Similarity=0.980 Sum_probs=382.2
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|.++||++|+++++..+.++|+|.+.|+++|+++++|+|+|++|+++|+..+++.+++.|++++||+++++.+++||.
T Consensus 43 ~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~ 122 (461)
T 2dzd_A 43 SYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKV 122 (461)
T ss_dssp CTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHH
T ss_pred cchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHH
Confidence 57889999999997554556789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.++++++++|||+|++....+++.+++.+++++++||+|+||..|+||+||++|++.+|+.++++.+..++...|++..+
T Consensus 123 ~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 202 (461)
T 2dzd_A 123 KARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEV 202 (461)
T ss_dssp HHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCE
T ss_pred HHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 99999999999999984225889999999999999999999999999999999999999999999988776667888899
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
+||+||+|++|++++++.+++|+++.++++.|+.++++++..+.+|++.++++..+++.+.+.++++++|+.|.+++||+
T Consensus 203 lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~ 282 (461)
T 2dzd_A 203 YVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFL 282 (461)
T ss_dssp EEEECCCSCEEEEEEEEECTTCCEEEEEEEEEEEEETTEEEEEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEECCCCCeEEEEEEEEcCCCCEEEEEeccccccccccceEEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEE
Confidence 99999999889999999998899998889999998889999999998789999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCC--C-CccccccCeEEEEeeeccCCCCCCCCCC
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELG--L-TQEKISPQGFAIQCRVTTEDPAKNFQPD 318 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~--~-~~~~i~~~g~ai~~ri~ae~p~~~f~p~ 318 (1080)
+++ |++||+|+|||+++++.+++.++|+|+++.++++++|.++++.. + .+..+..+|+++++|+++++|..+|.|.
T Consensus 283 ~~~-~~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~~~~~~~~~~~~~~~~g~~~~~ri~~~~~~~~~~p~ 361 (461)
T 2dzd_A 283 VSG-DEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRINGYAIQSRVTTEDPLNNFMPD 361 (461)
T ss_dssp EET-TEEEEEEEESSCCGGGHHHHHHHCCCHHHHHHHHHTTCCTTSTTTCCCCGGGCCCCSEEEEEEEESEEGGGTTEEC
T ss_pred EeC-CCEEEEEEECCCCCceeeEEeecCCCHHHHHHHHHcCCCccccccccccccccccceeEEEeeecccCCccCccCC
Confidence 997 67999999999999988888899999999999999999887543 3 3334567899999999999998889898
Q ss_pred CCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccc
Q psy3968 319 TGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQK 398 (1080)
Q Consensus 319 ~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~ 398 (1080)
.|.+..++.++++++|++......|..++++||+++|+|+++|+|+++|++++++++++++|+|++|||+++.+++.|+.
T Consensus 362 ~g~i~~~~~~~~~~v~~~~~~~~~G~~i~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~ 441 (461)
T 2dzd_A 362 TGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLSTWALTFEQAARKMLRNLREFRIRGIKTNIPFLENVVQHPK 441 (461)
T ss_dssp CEECSEEECCCCTTEEEEESSCSTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHHSHH
T ss_pred CCeeeEEecCCCCCeEeecccccCCCCcCcccchhhheeEEEcCCHHHHHHHHHHHHHhcEEeCCcCCHHHHHHHhCChh
Confidence 99999999998889999765568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeeeecCCccccc
Q psy3968 399 FVNGAVDTYFIDENPQLFT 417 (1080)
Q Consensus 399 F~~g~~~T~fie~~~elf~ 417 (1080)
|++|+++|+||++++++|.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~ 460 (461)
T 2dzd_A 442 FLSGEYDTSFIDTTPELFV 460 (461)
T ss_dssp HHTSCCCTTHHHHCGGGGC
T ss_pred hhCCCccchhhhcchhhhc
Confidence 9999999999999887764
No 12
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=100.00 E-value=4e-59 Score=601.54 Aligned_cols=404 Identities=39% Similarity=0.641 Sum_probs=315.7
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++|+++||++|++++. ++.++|+|.+.|+++|+++++|+|+|++|+++|+..+++.|++.|++++||+++++++++||
T Consensus 67 ~a~~~~~ADe~~~i~p~-~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK 145 (1236)
T 3va7_A 67 YSQHVTDADFSVALHGR-TAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLK 145 (1236)
T ss_dssp GCHHHHHSSEEEECCCS-STTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHST
T ss_pred CchhhhhCCEEEEeCCC-cccccccCHHHHHHHHHHhCCCEEEECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCH
Confidence 36899999999999754 56689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++++++|||+|+++ ..+.+.+++.++++++|||+||||..|+||+||++|++.+|+.++++.+.+++...|+++.
T Consensus 146 ~~ak~ll~~aGIPvpp~~-~~v~s~eea~~~a~~iGyPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~ 224 (1236)
T 3va7_A 146 HSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAG 224 (1236)
T ss_dssp THHHHHHHHTTCCCCC----------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCCCCee-EecCCHHHHHHHHHHcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCc
Confidence 999999999999999964 5688999999999999999999999999999999999999999999998887777788889
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
++||+||+|++|++++++.|++|+++++++++|+.++++++..+.+|++.++++.++++.+.+.++++++||+|++++||
T Consensus 225 vlVEeyI~G~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEf 304 (1236)
T 3va7_A 225 VFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEF 304 (1236)
T ss_dssp --------CCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEeeccCCCeEEEEEEEecCCceEEEEeeeeeeeeecCcceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Confidence 99999999989999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEcCC-CCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCC
Q psy3968 241 LCDES-GQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDT 319 (1080)
Q Consensus 241 ivd~d-G~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~ 319 (1080)
+++++ |++||||||||+++++++++.++|+|++++++++++|.+++ +.+..+..+|+++++|+|+++|.++|.|++
T Consensus 305 ivd~d~g~~y~iEINpRl~g~~~~te~vtGvDlv~~~l~~a~G~~l~---~~~~~~~~~g~Ai~~riyaedp~~~f~p~~ 381 (1236)
T 3va7_A 305 IYDEQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPD---FDNTKIEVSGASIEARLYAENPVKDFRPSP 381 (1236)
T ss_dssp EEETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC---GGGCCCCCCSEEEEEEEESEETTTTTEECC
T ss_pred EEECCCCcEEEEEEECCCCCccHHHHHHHCCCHHHHHHHHHCCCCCC---CccccccccceEEEEEEecCCcccccCCCC
Confidence 99974 78999999999999999999999999999999999999775 455566678999999999999999999999
Q ss_pred CceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccc
Q psy3968 320 GRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKF 399 (1080)
Q Consensus 320 G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F 399 (1080)
|.+..+..|.+ +|++.+ ++.|+.++++||+++|+|+++|+|+++|++++++++++++|+|++|||+||+++|.|+.|
T Consensus 382 G~i~~~~~p~g--vrvd~~-v~~G~~V~~~yds~la~vi~~g~~r~eA~~~~~~al~~~~i~G~~tn~~~~~~~~~~~~f 458 (1236)
T 3va7_A 382 GQLTSVSFPSW--ARVDTW-VKKGTNVSAEYDPTLAKIIVHGKDRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMF 458 (1236)
T ss_dssp EECCEEECCTT--SEEEEC-CCTTCEECSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHHCHHH
T ss_pred ceEEEEEcCCc--cEeccc-ccCCCEeCCCCCCceEEEEEEeCCHHHHHHHHHHHhhCEEEeCcccCHHHHHHHhCCHHH
Confidence 99999988865 788874 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeecCC
Q psy3968 400 VNGAVDTYFIDEN 412 (1080)
Q Consensus 400 ~~g~~~T~fie~~ 412 (1080)
++|+++|+||+++
T Consensus 459 ~~~~~~t~~~~~~ 471 (1236)
T 3va7_A 459 KEAKVATKVLDSF 471 (1236)
T ss_dssp HHTCCCTTGGGGC
T ss_pred hCCCCcchhhhhc
Confidence 9999999999975
No 13
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=5.4e-57 Score=536.15 Aligned_cols=412 Identities=46% Similarity=0.840 Sum_probs=377.8
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|.++||++++++|. ...+|.|.+.|+++|+++++|+|+|++|+++|+..+++.+++.|++++||+++++.+++||.
T Consensus 39 ~~~~~~ad~~~~~~p~--~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~ 116 (451)
T 1ulz_A 39 ARHVKLADEAYMIGTD--PLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKA 116 (451)
T ss_dssp CHHHHHSSEEEECCSS--TTHHHHCHHHHHHHHHHTTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHH
T ss_pred cchhhhCcEEEEcCCC--cccccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHH
Confidence 5688999999998643 45689999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.++++++++|||+|++....+++.+++.+++++++||+||||..|+||+||++|++.+|+.++++.+...+...|++..+
T Consensus 117 ~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 196 (451)
T 1ulz_A 117 RSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDL 196 (451)
T ss_dssp HHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCE
T ss_pred HHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 99999999999999984125889999999999999999999999999999999999999999999988776777888899
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
++|+||+|++|++++++.+.+|+++.+..+.|+.++++++..+.+|++.++++..+++.+.+.++++++||+|.+++||+
T Consensus 197 lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 276 (451)
T 1ulz_A 197 LLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFI 276 (451)
T ss_dssp EEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEcccCCeEEEEEEEEcCCCCEEEEeeeecccccccccceeECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEE
Confidence 99999999889999999998899998888888888888888899998779999999999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCc
Q psy3968 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGR 321 (1080)
Q Consensus 242 vd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~ 321 (1080)
++++|++||+|+|||+++++++++.++|+|++++++++++|.+++ +.+..+...++++.+++|++++..+|.|..|.
T Consensus 277 ~~~~g~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g~ 353 (451)
T 1ulz_A 277 ADQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLT---IKQEDVKFNGYAIECRINAEDPKKNFAPSTRV 353 (451)
T ss_dssp ECTTCCEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCC---CCGGGCCCCSEEEEEEEESEEGGGTTEECCSB
T ss_pred EeCCCCEEEEEeeCCCCccchHHHHHhCCCHHHHHHHHHcCCCCC---CccccCCCceEEEEEeccccCcccCcCCCCce
Confidence 998889999999999999988888999999999999999999876 23334556678999999999998889999999
Q ss_pred eEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccC
Q psy3968 322 IEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVN 401 (1080)
Q Consensus 322 i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~ 401 (1080)
+..+..|..+|++++.. .+.|..++++|++++|+|+++|+|+++|++++++++++++|+|++|||+++.++|.|+.|++
T Consensus 354 i~~~~~~~~~~v~~~~~-~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~~ 432 (451)
T 1ulz_A 354 IERYYVPGGFGIRVEHA-AARGFEVTPYYDSMIAKLITWAPTWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKA 432 (451)
T ss_dssp CCSEECCCSTTEEEEEC-CCTTCBCCSSSCCEEEEEEEEESSHHHHHHHHHHHHHTCEECSSCCSHHHHHHHHHCHHHHH
T ss_pred eceEECCCCCCcccccC-ccCCCEecccccchheEEEEECCCHHHHHHHHHHHHhhcEEeCccCCHHHHHHHhCCHHHhc
Confidence 88888877778888763 68999999988999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeecCCccccccC
Q psy3968 402 GAVDTYFIDENPQLFTLQ 419 (1080)
Q Consensus 402 g~~~T~fie~~~elf~~~ 419 (1080)
|+++|+||++++++|++.
T Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (451)
T 1ulz_A 433 GKFTTKYLEEHPEVFEYE 450 (451)
T ss_dssp TCCCTTTTTTCGGGGCCC
T ss_pred CCCcchhhhhhHhhcccC
Confidence 999999999998888764
No 14
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=100.00 E-value=1.1e-56 Score=545.92 Aligned_cols=405 Identities=34% Similarity=0.586 Sum_probs=364.5
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcC--CcEeCCcHHHHHHhc
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAG--IRFIGPSPYVVQQMG 78 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~g--i~~iGps~eai~~~~ 78 (1080)
+++|.++||++++++++ .+.++|+|.+.|+++|+++++|+|+|++|+++|+..++..|++.| ++++||+++++.+++
T Consensus 94 ~~~~~~~aD~~~~ip~~-~~~~~y~d~~~l~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~ 172 (554)
T 1w96_A 94 NAEYIRMADQYIEVPGG-TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLG 172 (554)
T ss_dssp TCHHHHHSSEEEECCCS-SGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSC
T ss_pred CChhhhhCCEEEEcCCC-CccccccCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHh
Confidence 36789999999999643 455799999999999999999999999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCC------------------------CCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEE
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPG------------------------PITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRV 134 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~------------------------~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~i 134 (1080)
||..++++++++|||+|++... .+++.+++.+++++++||+||||..|+||+||++
T Consensus 173 dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~ 252 (554)
T 1w96_A 173 DKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQ 252 (554)
T ss_dssp SHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEE
T ss_pred CHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCCCCceEEE
Confidence 9999999999999999998431 1478999999999999999999999999999999
Q ss_pred ECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHH
Q psy3968 135 VRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDIN 214 (1080)
Q Consensus 135 v~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~ 214 (1080)
|++.+|+.++++.+.+++ .++.++||+||+|++|++++++.++.|+++.++.++|+.++++++..+.+|++.++++
T Consensus 253 v~~~~el~~a~~~~~~~~----~~~~vlvEe~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~~P~~~l~~~ 328 (554)
T 1w96_A 253 VEREEDFIALYHQAANEI----PGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAE 328 (554)
T ss_dssp ECSHHHHHHHHHHHHHHS----TTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCCSSCHH
T ss_pred ECCHHHHHHHHHHHHhhc----cCCCEEEEEecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeeeCCCcCCCHH
Confidence 999999999998887642 2468999999998799999999998899999999999999888888888998778999
Q ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEc-CCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCC----
Q psy3968 215 VRNKMTDLAVKLAKHVGYSNAGTVEFLCD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELG---- 289 (1080)
Q Consensus 215 ~~~~l~~~a~~i~~alg~~G~~~vEfivd-~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~---- 289 (1080)
..+++.+.+.++++++||+|++++||+++ .+|++||||||||+++++.+++.++|+|++++++++++|.++++..
T Consensus 329 ~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~~~~~~~~~G~dl~~~~~~~a~G~~l~~~~~~~~ 408 (554)
T 1w96_A 329 TFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIRT 408 (554)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEEEECTTTCCEEEEEEECSCCTTTHHHHHHHCCCHHHHHHHHHTTCCGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcceEEEEEEEECCCCCEEEEEeeCCCCcceehhhhhcCCCHHHHHHHHHcCCCcccccchhh
Confidence 99999999999999999999999999998 6788999999999999999888899999999999999999875421
Q ss_pred -------------CC---------ccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceec
Q psy3968 290 -------------LT---------QEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIIS 347 (1080)
Q Consensus 290 -------------~~---------~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~ 347 (1080)
+. +..+...|+++++|+|+++|.++|.|.+|.+..+..+..++++++.+ ...|+.++
T Consensus 409 ~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~p~~G~i~~~~~~~~~~v~~~~~-~~~g~~i~ 487 (554)
T 1w96_A 409 LYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVWGYFS-VGNNGNIH 487 (554)
T ss_dssp HTTCCTTCCCCCCTTCCSHHHHHHCCCCCCCSEEEEEEEEEECCCCSSCCCSSSEEEECCSSCSSEEEEEE-ECCSCSSC
T ss_pred hccCCccccccccccccccccccccccCCCCeEEEEEEEEccCCCCCcccCCeEEeEEecCCCCCEEEeee-cccCCccC
Confidence 22 22345679999999999999999999999998888777778887653 57899999
Q ss_pred cccCCeeEEEEEecCChHHHHHHHHHHhhccEEcc-cccCHHHHHHhcccccccCCceeeeeecC
Q psy3968 348 PYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411 (1080)
Q Consensus 348 ~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~G-v~tni~~l~~il~~~~F~~g~~~T~fie~ 411 (1080)
+.||+++|+|+++|+|+++|++++++++++++|+| ++|||+||+++|.|++|++|+++|+||++
T Consensus 488 ~~~~~~~~~vi~~g~~~~eA~~~~~~al~~i~i~g~~~~~i~~~~~~~~~~~f~~~~~~t~~~~~ 552 (554)
T 1w96_A 488 SFSDSQFGHIFAFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDD 552 (554)
T ss_dssp SSCSEEEEEEEEEESSHHHHHHHHHHHHHHHTTCC----CCHHHHHHHTSHHHHTTCCCTTHHHH
T ss_pred CCCCCceEEEEEEeCCHHHHHHHHHHHHhccEEEeeccCCHHHHHHHhcCHhhhcCCccchHhhh
Confidence 99999999999999999999999999999999999 89999999999999999999999999975
No 15
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=100.00 E-value=3.8e-56 Score=528.90 Aligned_cols=406 Identities=47% Similarity=0.808 Sum_probs=372.8
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|.++||+++++++. ....+|.|.+.|+++|+++++|+|+|++|+++|+..+++.+++.|++++||+++++.+++||.
T Consensus 38 ~~~~~~ad~~~~i~~~-~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~ 116 (451)
T 2vpq_A 38 ALHTQIADEAYCVGPT-LSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKD 116 (451)
T ss_dssp CHHHHHSSEEEEEECS-SGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHH
T ss_pred cchhhhCCEEEEcCCC-CccccccCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHH
Confidence 5688999999998643 445799999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.++++|+++|||+|+++...+++.+++.+++++++||+||||..|+||+||++|++.+|+.++++.+..++...|++..+
T Consensus 117 ~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~ 196 (451)
T 2vpq_A 117 VAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGL 196 (451)
T ss_dssp HHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcE
Confidence 99999999999999974225789999999999999999999999999999999999999999999888766666777899
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfi 241 (1080)
++|+||+|++|++++++.+++|+++.+.++.|+.++++++..+.+|++.++++..+++.+.+.++++++||+|.+++||+
T Consensus 197 lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~ 276 (451)
T 2vpq_A 197 YMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFI 276 (451)
T ss_dssp EEEECCCSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEEcCCCCEEEEeccccchhccccceEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEE
Confidence 99999999789999999998899999888889888889999999999779999999999999999999999999999999
Q ss_pred Ec-CCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 242 CD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 242 vd-~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
++ ++|++||+|+|||+++++++++.++|+|++++++++++|.+++ +.+..+...++++.+++|+++|..+|.|..|
T Consensus 277 ~~~~~g~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~p~~g 353 (451)
T 2vpq_A 277 YDLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLP---YKQEDIKLTGHAIEFRINAENPYKNFMPSPG 353 (451)
T ss_dssp EETTTTEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHTTCCCS---CCGGGCCCCSEEEEEEEESEEGGGTTEECCS
T ss_pred EECCCCCEEEEEeeCCCCCceehhhHHhCCCHHHHHHHHHCCCCCC---CcccccCcCceEeeeEeeeeccccccCCCCC
Confidence 99 7888999999999999988888999999999999999999875 2333456678899999999999888999999
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
.+..+..|..++++++.. .+.|..+++.|++++|+|+++|+|+++|++++++++++++|+|++||++|+++++.|+.|+
T Consensus 354 ~i~~~~~~~~~~v~~~~~-~~~g~~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 432 (451)
T 2vpq_A 354 KIEQYLAPGGYGVRIESA-CYTNYTIPPYYDSMVAKLIIHEPTRDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFR 432 (451)
T ss_dssp BCSEEECCCSTTEEEECC-CCTTCBCCTTTCCEEEEEEEEESSHHHHHHHHHHHHHTCEEESSCCSHHHHHHHHTCHHHH
T ss_pred EEeEEECCCCCCcccccc-cccCCccCcccccccEEEEEEeCCHHHHHHHHHHHHhccEEeCcCCCHHHHHHHhCCHhhh
Confidence 998888777778888874 6889988888999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC
Q psy3968 401 NGAVDTYFIDEN 412 (1080)
Q Consensus 401 ~g~~~T~fie~~ 412 (1080)
+|+++|+||+++
T Consensus 433 ~~~~~~~~~~~~ 444 (451)
T 2vpq_A 433 SGKFNTNFLEQN 444 (451)
T ss_dssp HTCCCTTTTTTS
T ss_pred cCCCccHHHhhh
Confidence 999999999976
No 16
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=100.00 E-value=6.3e-55 Score=518.09 Aligned_cols=404 Identities=44% Similarity=0.793 Sum_probs=369.3
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|.++||++++++| .....+|.|.+.|+++|+++++|+|+|++|+++|+..+++.+++.|++++||+++++.+++||.
T Consensus 39 ~~~~~~ad~~~~~~p-~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~ 117 (449)
T 2w70_A 39 LKHVLLADETVCIGP-APSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKV 117 (449)
T ss_dssp CHHHHHSSEEEEEEC-SSGGGTTTCHHHHHHHHHHHTCCEEECCSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHH
T ss_pred CchhhhCCEEEEcCC-CCccccccCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHH
Confidence 578899999999853 2455689999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEA-MEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~-~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.++++++++|||+|++....+++.+++ .+++++++||+||||..|+||+|+++|++.+|+.++++.+...+...|++..
T Consensus 118 ~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~ 197 (449)
T 2w70_A 118 SAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDM 197 (449)
T ss_dssp HHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999842257888999 8999999999999999999999999999999999999988877666677889
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|++|++++++.+.+|+++.+..+.|+.++++++..+.+|++.++++..+++.+.+.++++++||+|++++||
T Consensus 198 ~lvEe~i~g~~e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~ 277 (449)
T 2w70_A 198 VYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEF 277 (449)
T ss_dssp EEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEEEeccCCCeEEEEEEEEcCCCCEEEEeceecccccCCcceeeeCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEE
Confidence 99999999988999999999889999888888888888888889999877999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
++++ |++||+|+|||+++++++++.++|+|++++++++++|.+++ +.+..+...++++.+++|++++ .+|.|..|
T Consensus 278 ~~~~-~~~~viEiN~R~~~~~~~~~~~~g~dl~~~~~~~~~G~~l~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 352 (449)
T 2w70_A 278 LFEN-GEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHAVECRINAEDP-NTFLPSPG 352 (449)
T ss_dssp EEET-TEEEEEEEECSCCTTHHHHHHHHCCCHHHHHHHHHHTCCCS---SCGGGCCCCSEEEEEEEECBCT-TTCCBCCE
T ss_pred EEEC-CCEEEEEEECCCCccchHHHHHhCCCHHHHHHHHHCCCCCC---CchhccccceeEEEEeecccCc-cccCCCCC
Confidence 9997 67999999999999988888999999999999999999875 3333455678999999999999 88989899
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhccccccc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFV 400 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~ 400 (1080)
.+..+..+..+|++++. ..+.|..+++.+++++|+|+++|+|+++|++++++++++++++|++|||++++++|.||.|+
T Consensus 353 ~i~~~~~~~~~~v~~~~-~~~~g~~~~~~~~~~~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~~i~~~~~~~~~~~~~ 431 (449)
T 2w70_A 353 KITRFHAPGGFGVRWES-HIYAGYTVPPYYDSMIGKLICYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQ 431 (449)
T ss_dssp ECCEEECCCSTTEEEEC-CCCTTCEECSSSCSEEEEEEEEESSHHHHHHHHHHHHHHCEEESSCCSHHHHHHHHTCHHHH
T ss_pred EeceEECCCCCcEEEEe-ccccCCEeccccCcceEEEEEEcCCHHHHHHHHHHHHhhcEEeCcCCCHHHHHHHHcChhhc
Confidence 88888878778888876 36899999888999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeeecCC
Q psy3968 401 NGAVDTYFIDEN 412 (1080)
Q Consensus 401 ~g~~~T~fie~~ 412 (1080)
+|+++|+||+++
T Consensus 432 ~~~~~~~~~~~~ 443 (449)
T 2w70_A 432 HGGTNIHYLEKK 443 (449)
T ss_dssp HCCCCTTHHHHH
T ss_pred cCCceehhhhhh
Confidence 999999999864
No 17
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=100.00 E-value=5.8e-41 Score=392.40 Aligned_cols=349 Identities=16% Similarity=0.166 Sum_probs=285.0
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
++|.++||+++.+ +|.|.+.|+++++++++|+|+|+ ++..+...+++.+++.|+ +||+++++.+++||.
T Consensus 43 ~~~~~~ad~~~~~--------~~~d~~~l~~~~~~~~~d~v~~~-~~~~~~~~~a~~~~~~gl--~g~~~~~~~~~~dK~ 111 (403)
T 4dim_A 43 KPCLNLADEISYM--------DISNPDEVEQKVKDLNLDGAATC-CLDTGIVSLARICDKENL--VGLNEEAAIMCGDKY 111 (403)
T ss_dssp HHHHHHCSEEEEC--------CTTCHHHHHHHTTTSCCSEEECC-SCSTTHHHHHHHHHHHTC--SSCCHHHHHHHHCHH
T ss_pred CcchhhCCeEEEe--------cCCCHHHHHHHHHHcCCCEEEeC-CcchhHHHHHHHHHHcCc--CCCCHHHHHHHhCHH
Confidence 5788999999998 57789999999999999999997 666677788888999998 499999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
.++++++++|||+|++ ..+++.+++.+++++++||+|+||..|+||+|+++|++.+|+.++++.+...+ .++.+
T Consensus 112 ~~~~~l~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~----~~~~~ 185 (403)
T 4dim_A 112 KMKEAFKKYNVNTARH--FVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLT----KRDYC 185 (403)
T ss_dssp HHHHHHHHHTCCCCCE--ECCCSHHHHHHHHHTSCSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHC----SSSCC
T ss_pred HHHHHHHHcCCCCCCE--EEeCCHHHHHHHHhcCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcC----cCCcE
Confidence 9999999999999998 56899999999999999999999999999999999999999999998887642 35689
Q ss_pred EEeeccCCCcEEEEEEEEecCCcEEEEEeeec-cc-cccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcc-eEEE
Q psy3968 162 FIEKFIERPRHIEVQLLGDKAGNVVHLYERDC-SV-QRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSN-AGTV 238 (1080)
Q Consensus 162 lVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~-~~-~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G-~~~v 238 (1080)
++|+||+| .|+++.++.. +|++..+..... .. ..+........|+. ++++..+++.+.+.++++++|++| ++|+
T Consensus 186 lvEe~i~g-~e~sv~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~l~~~a~~~~~~lg~~gg~~~v 262 (403)
T 4dim_A 186 IVEEFIEG-YEFGAQAFVY-KNDVLFVMPHGDETYMSHTAVPVGHYVPLD-VKDDIIEKTKTEVKKAIKALGLNNCAVNV 262 (403)
T ss_dssp EEEECCCS-EEEEEEEEEE-TTEEEEEEEEEEEEEESSSEEEEEEEESCC-SCHHHHHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEEEccCC-cEEEEEEEEE-CCEEEEEEEecceeccCCCCcceeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCCCcEEE
Confidence 99999999 8999999975 566655432211 11 11123345567874 999999999999999999999997 8999
Q ss_pred EEEEcCCCCEEEEEEeccCCCCc--cchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCC
Q psy3968 239 EFLCDESGQFYFIEVNARLQVEH--TVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQ 316 (1080)
Q Consensus 239 Efivd~dG~~~~iEvNpR~~g~~--~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~ 316 (1080)
||+++ +|++||+|||||+++++ .+++.++|+|++++++++++|.++++ +.+......+ ++.++++. |.
T Consensus 263 e~~~~-~~~~~~iEiN~R~~~~~~~~~~~~~~G~d~~~~~~~~~~G~~~~~--~~~~~~~~~~-~~~~~~~~------~~ 332 (403)
T 4dim_A 263 DMILK-DNEVYIIELTGRVGANCLPELVEINYGIEYYKMIASMAISENPLV--FWSQKSKENK-AGLARMII------ET 332 (403)
T ss_dssp EEEEE-TTEEEEEEEESSCCSTTHHHHHHHHHTSCHHHHHHHHHTTCCTHH--HHTTCCSSCC-EEEEEEEC------CS
T ss_pred EEEEE-CCcEEEEEEcCCCCCCcHHHHHHHHhCcCHHHHHHHHHcCCCccc--cccccccccc-cceEEEEE------ec
Confidence 99998 67799999999999975 46788999999999999999998732 2232222233 35566653 56
Q ss_pred CCCCceEEEEcCCcceEEE---cCCccCCCceeccccCC--eeEEEEEecCChHHHHHHHHHHhhccEEc
Q psy3968 317 PDTGRIEVFRSGEGMGIRL---DGASAFAGAIISPYYDS--LLVKVIAHAADLQSSCAKMNRALREFRVR 381 (1080)
Q Consensus 317 p~~G~i~~~~~~~~~gvr~---d~~~~~~G~~i~~~~ds--~l~~Via~G~t~~eA~~~a~ral~~i~I~ 381 (1080)
|..|++..+..+...+.++ +. ...+|+.+++.||+ ++|+|+++|+|+++|++++++++++++|+
T Consensus 333 ~~~G~i~~~~~~~~~~~~v~~~~~-~~~~G~~v~~~~d~~~~~g~vi~~~~~~~~a~~~~~~~~~~~~i~ 401 (403)
T 4dim_A 333 EKSGILKEILNSNAKDDDIVEITF-FKEENDEIKKFENSNDCIGQIIVKEETLDKCKDKLDVIINNINII 401 (403)
T ss_dssp SCCEEEEEEEECCCCCTTEEEEEE-CCCTTCEECCSCSGGGCCEEEEEEESSHHHHHHHHHHHHTTEEEE
T ss_pred CCCeEEEeeecccccCCCeEEEEE-EcCCCCEeCCCCCCCceeEEEEEEeCCHHHHHHHHHHHhccEEEE
Confidence 7889998888765543332 33 46899999999999 99999999999999999999999999874
No 18
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=100.00 E-value=5e-37 Score=357.49 Aligned_cols=345 Identities=17% Similarity=0.175 Sum_probs=269.1
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++.+.||+.+.+ +|.|.+.++++++++++|+|++++++.. ..+++.+++.|+ ++||+++++.+++||.
T Consensus 46 ~~~~~~~d~~~~~--------~~~d~~~l~~~~~~~~~d~v~~~~e~~~--~~~~~~l~~~gi-~~~~~~~~~~~~~dK~ 114 (391)
T 1kjq_A 46 APAMHVAHRSHVI--------NMLDGDALRRVVELEKPHYIVPEIEAIA--TDMLIQLEEEGL-NVVPCARATKLTMNRE 114 (391)
T ss_dssp CGGGGGSSEEEEC--------CTTCHHHHHHHHHHHCCSEEEECSSCSC--HHHHHHHHHTTC-EESSCHHHHHHHHSHH
T ss_pred CchhhhccceEEC--------CCCCHHHHHHHHHHcCCCEEEECCCcCC--HHHHHHHHhCCC-CcCCCHHHHHHhhCHH
Confidence 4677889998876 4788999999999999999999998766 346777888999 5799999999999999
Q ss_pred HHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAA-IDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l-~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+++++ +++|||+|++ ..+++.+++.+++++++||+|+||..|+||+|+++|++.+|+.++++.+...+.. .++.
T Consensus 115 ~~~~~l~~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~ 190 (391)
T 1kjq_A 115 GIRRLAAEELQLPTSTY--RFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRA--GAGR 190 (391)
T ss_dssp HHHHHHHTTSCCCBCCE--EEESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGG--GCCC
T ss_pred HHHHHHHHhCCCCCCCe--eeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhccc--CCCC
Confidence 999999 8999999998 4688999999999999999999999999999999999999999999887654221 2568
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||++..|+++.++.+++| +. ++.........+.....+.|++ ++++..+++.+.+.++++++|++|.+++||
T Consensus 191 ~lvEe~i~~g~E~sv~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~ 267 (391)
T 1kjq_A 191 VIVEGVVKFDFEITLLTVSAVDG-VH-FCAPVGHRQEDGDYRESWQPQQ-MSPLALERAQEIARKVVLALGGYGLFGVEL 267 (391)
T ss_dssp EEEEECCCCSEEEEEEEEEETTE-EE-ECCCEEEEEETTEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred EEEEEecCCCeEEEEEEEEeCCC-eE-EccCcceEEECCEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEEEEE
Confidence 99999999438999999988665 22 2211001111122223456874 899999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++ ++||+|+|||++++..++...+|+|+++.++++++|.+++++ ...++++.+++++++|.. +....|
T Consensus 268 ~~~~~-~~~viEiN~R~~~~~~~~~~~~g~~~~~~~~~~~~G~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~ 338 (391)
T 1kjq_A 268 FVCGD-EVIFSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGI-------RQYGPAASAVILPQLTSQ-NVTFDN 338 (391)
T ss_dssp EEETT-EEEEEEEESSCCGGGGGHHHHBSSCHHHHHHHHHTTCCCCCC-------CBCSSEEEEEECCEEEES-SCEEEC
T ss_pred EEeCC-cEEEEEEECCCCCCcceeeeecCcCHHHHHHHHHcCCCCCCc-------cccCcEEEEEEEccCccc-cccccc
Confidence 99977 699999999999976665556799999999999999987632 234557778888876532 111113
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcc
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRG 382 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~G 382 (1080)
....++ |+ ..++++.. . .+.+++++|+|+++|+|+++|+++++++++.++|+|
T Consensus 339 ~~~~~~-pg-~~v~~~~~---~----~~~~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~ 391 (391)
T 1kjq_A 339 VQNAVG-AD-LQIRLFGK---P----EIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG 391 (391)
T ss_dssp GGGSCB-TT-EEEEECCC---C----CEEEECCCEEEEEECSSHHHHHHHHHHHHHHCEEEC
T ss_pred HHHHhC-CC-CEEEEecc---C----CCCCCCeEEEEEEecCCHHHHHHHHHHHHhhheecC
Confidence 222233 32 23444321 1 244667999999999999999999999999999864
No 19
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=100.00 E-value=4.6e-37 Score=362.02 Aligned_cols=357 Identities=18% Similarity=0.191 Sum_probs=270.0
Q ss_pred CcchhccceEEEccCCCCCCCCCCCH----HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHh
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNI----PEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQM 77 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~----e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~ 77 (1080)
+.|...+|+++.++ .|.|. +.+.++++++++|+|++..++.. ...+..++..|++ |++++++.++
T Consensus 42 ~~~~~~~d~~~~~~-------~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~--~~~a~l~e~lglp--g~~~~~~~~~ 110 (425)
T 3vot_A 42 PGNLPAVERCVPLP-------LFEDEEAAMDVVRQTFVEFPFDGVMTLFEPAL--PFTAKAAEALNLP--GLPFTTMENC 110 (425)
T ss_dssp CCSCTTEEEEEEEC-------TTTCHHHHHHHHHHHHHHSCCSEEECCCGGGH--HHHHHHHHHTTCS--SCCHHHHHHH
T ss_pred ccCHhhccEEEecC-------CCCCHHHHHHHHHHhhhhcCCCEEEECCchhH--HHHHHHHHHcCCC--CCCHHHHHHh
Confidence 35677889988883 45554 45566677889999999876544 3445666778876 8999999999
Q ss_pred cCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHH----
Q psy3968 78 GDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAK---- 153 (1080)
Q Consensus 78 ~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~---- 153 (1080)
+||..+|++|+++|||+|++ ..+++.+++.+ .+++||+||||..|+||+||++|++.+|+.++++.+.....
T Consensus 111 ~dK~~~k~~l~~~gip~p~~--~~~~~~~~~~~--~~~g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~ 186 (425)
T 3vot_A 111 RNKNKTRSILQQNGLNTPVF--HEFHTLADLEN--RKLSYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLN 186 (425)
T ss_dssp HCHHHHHHHHHHTTCCCCCE--EEESSGGGGTT--CCCCSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHH
T ss_pred hCHHHHHHHHHHCCCCCCce--eccCcHHHHHH--hhcCCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhh
Confidence 99999999999999999998 46788877653 57899999999999999999999999999999998865422
Q ss_pred -HhcCCCcEEEeeccCCCcEEEEEEEEecCCcE--EEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Q psy3968 154 -AAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV--VHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV 230 (1080)
Q Consensus 154 -~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v--v~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al 230 (1080)
...++..+++|+||+| +|++++++.+ +|++ +.+..+.+.....+.......|++ ++++..+++.+.+.++++++
T Consensus 187 ~~~~~~~~~lvEe~i~G-~e~sv~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~Pa~-l~~~~~~~i~~~~~~~~~al 263 (425)
T 3vot_A 187 RFVHGKTGIVAEQFIDG-PEFAIETLSI-QGNVHVLSIGYKGNSKGPFFEEGVYIAPAQ-LKEETRLAIVKEVTGAVSAL 263 (425)
T ss_dssp HHHTTCCCEEEEECCCS-CEEEEEEEEE-TTEEEEEEEEEEECCCCSBCCCCEEEESCC-CCHHHHHHHHHHHHHHHHHT
T ss_pred hhccCCCcEEEEEEecC-cEEEEEEEEe-CCcEEEEeEEEEeccCCCccccceEeeccc-CCHHHHHHHHHHHHHHHHHc
Confidence 1234678999999999 7999999876 3443 345566666666667778889994 99999999999999999999
Q ss_pred CCc-ceEEEEEEEcCCCCEEEEEEeccCCCC---ccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeee
Q psy3968 231 GYS-NAGTVEFLCDESGQFYFIEVNARLQVE---HTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRV 306 (1080)
Q Consensus 231 g~~-G~~~vEfivd~dG~~~~iEvNpR~~g~---~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri 306 (1080)
|+. |++|+||+++++|++||+|+|||++|. +.+++.++|+|+++++++.++|..... .+. .......++....+
T Consensus 264 g~~~G~~~ve~~~~~dG~~~~iEiN~R~gG~~~~~~l~~~~~G~d~~~~~i~~alg~~~~~-~~~-~~~~~~~~~~~~~~ 341 (425)
T 3vot_A 264 GIHQGPAHTELRLDKDGTPYVIEVGARIGGSGVSHYIVKESTGINFMQLVLQNALKPLESS-EFE-GEIRPVRTAGNYII 341 (425)
T ss_dssp TCCSEEEEEEEEECTTCCEEEEEEESSCGGGGHHHHHHHHHHCCCHHHHHHHHHHSCCCGG-GSC-SCCCCSSEEEEEEC
T ss_pred CCCcceEEEEEEEEeCCcEEEEEEecCCCCCCchHHHHHHHHCCCHHHHHHHHHCCCcccc-ccc-cccccceEEEEEEE
Confidence 996 999999999999999999999999884 456788999999999999999975431 111 11222344444433
Q ss_pred ccCCCCCCCCCCCCceEEEEcC----CcceE-EEcCCccCCCceeccc--cCCeeEEEEEecCChHHHHHHHHHHhhccE
Q psy3968 307 TTEDPAKNFQPDTGRIEVFRSG----EGMGI-RLDGASAFAGAIISPY--YDSLLVKVIAHAADLQSSCAKMNRALREFR 379 (1080)
Q Consensus 307 ~ae~p~~~f~p~~G~i~~~~~~----~~~gv-r~d~~~~~~G~~i~~~--~ds~l~~Via~G~t~~eA~~~a~ral~~i~ 379 (1080)
.+ +..|++..+... ..+++ ++.. ...+|+.+.+. +++++|+|+++|+|+++|+++++++++.++
T Consensus 342 ~~--------~~~G~~~~i~g~~~~~~~p~v~~~~~-~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~~i~ 412 (425)
T 3vot_A 342 PV--------QGSGTFEKIDGLEEVKQRQEVKRVFQ-FMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDDELH 412 (425)
T ss_dssp CC--------CSCEEEEEEETHHHHHTCTTEEEEEE-CCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHHHCE
T ss_pred cC--------CCCeEEEecCCHHHHhcCCCeEEEEE-EecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhCccE
Confidence 22 345666554321 23454 3443 35789988754 567999999999999999999999999999
Q ss_pred EcccccCHH
Q psy3968 380 VRGVKTNIP 388 (1080)
Q Consensus 380 I~Gv~tni~ 388 (1080)
|. .++||.
T Consensus 413 i~-~~~~i~ 420 (425)
T 3vot_A 413 II-YQNNLT 420 (425)
T ss_dssp EE-ECC---
T ss_pred EE-EeCCCC
Confidence 85 345543
No 20
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=100.00 E-value=1.6e-36 Score=358.27 Aligned_cols=359 Identities=18% Similarity=0.184 Sum_probs=267.4
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++.++||+.+.+ +|.|.+.++++++++++|+|++++++.. ..+++.+++.|+ ++||+++++.+++||.
T Consensus 54 ~~~~~~ad~~~~~--------~~~d~~~l~~~~~~~~~d~V~~~~e~~~--~~~~~~l~~~gi-~~~~~~~~~~~~~dK~ 122 (433)
T 2dwc_A 54 APAMQVAHRSYVG--------NMMDKDFLWSVVEREKPDAIIPEIEAIN--LDALFEFEKDGY-FVVPNARATWIAMHRE 122 (433)
T ss_dssp CHHHHHSSEEEES--------CTTCHHHHHHHHHHHCCSEEEECSSCSC--HHHHHHHHHTTC-CBSSCHHHHHHHHCHH
T ss_pred ChhhhhcceEEEC--------CCCCHHHHHHHHHHcCCCEEEECcccCC--HHHHHHHHhcCC-eeCCCHHHHHHhhCHH
Confidence 3567788998876 4788999999999999999999999766 456778888999 6799999999999999
Q ss_pred HHHHHH-HHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAA-IDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l-~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+++++ +++|||+|++ ..+++.+++.+++++++||+|+||..|+||+|+++|++.+|+.++++.+...+.. ++..
T Consensus 123 ~~k~~l~~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~ 198 (433)
T 2dwc_A 123 RLRETLVKEAKVPTSRY--MYATTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARG--SAEK 198 (433)
T ss_dssp HHHHHHHHTSCCCCCCE--EEESSHHHHHHHHHHHCSSEEEEECCC------EEECSGGGHHHHHHC-----------CC
T ss_pred HHHHHHHHhcCCCCCCe--eEeCCHHHHHHHHHhcCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccc--CCCC
Confidence 999999 8999999998 4688999999999999999999999999999999999999999999877653211 2468
Q ss_pred EEEeeccCCCcEEEEEEEEec--CCcEEE-EEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDK--AGNVVH-LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT 237 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~--~G~vv~-l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~ 237 (1080)
+++|+||++..|+++.++.+. +|+++. +..........+.......|++ ++++..+++.+.+.++++++|++|.++
T Consensus 199 ~lvEe~i~~g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~~~~~i~~~a~~~~~~lg~~G~~~ 277 (433)
T 2dwc_A 199 IIVEEHIDFDVEVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGGLGIFG 277 (433)
T ss_dssp EEEEECCCCSEEEEECCEEEECTTSCEEEEEECCEEEEESSSSEEEEEESCC-CCHHHHHHHHHHHHHHHHHHCSSEECE
T ss_pred EEEEccCCCCeeEEEEEEecccCCCCEeEEEecccceEEEcCEEEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeeEEE
Confidence 999999993389999999875 677422 2111111111233344456885 999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEEeccCCCCccc--hhcccCCCHHHHHHHHHcCCCCCCCCC-CccccccCeEEEEeeeccCCCCCC
Q psy3968 238 VEFLCDESGQFYFIEVNARLQVEHTV--TEEITGVDLVQSQIRVAEGMTLPELGL-TQEKISPQGFAIQCRVTTEDPAKN 314 (1080)
Q Consensus 238 vEfivd~dG~~~~iEvNpR~~g~~~~--~e~~tGvdl~~~~l~~alG~~l~~l~~-~~~~i~~~g~ai~~ri~ae~p~~~ 314 (1080)
+||+++++ ++||+|+|||++++..+ ....+|+|+++.++++++|.+++...+ .+..+...++++.+++++++|..
T Consensus 278 ve~~~~~~-~~~viEiN~R~~~~~~~~~~~~~~g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~a~~~~v~~~~~~~- 355 (433)
T 2dwc_A 278 VEMFVKGD-KVWANEVSPRPHDTGMVTLASHPPGFSEFALHLRAVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGY- 355 (433)
T ss_dssp EEEEEETT-EEEEEEEESSCCGGGGGHHHHSCTTCSHHHHHHHHHHTCCCCCEEETTEEEECCSSCEEEEEEECSSCEE-
T ss_pred EEEEEeCC-cEEEEEEeCCcCCCcceehhHhccCCCHHHHHHHHHcCCCCCcccccccccccccccEEEEEEEcCCCCc-
Confidence 99999977 69999999999996443 355679999999999999998762100 01123445678888888876521
Q ss_pred CCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccC
Q psy3968 315 FQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTN 386 (1080)
Q Consensus 315 f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tn 386 (1080)
+....|.......|+ ..++++.. .+ ..+++++|+|++.|+|+++|+++++++++.++++|...+
T Consensus 356 ~~~i~g~~~~~~~pg-~~v~~~~~---~~----~~~~~~lg~v~~~g~~~~ea~~~~~~~~~~i~~~~~~~~ 419 (433)
T 2dwc_A 356 SPRFRGLVKALSVPN-ATVRLFGK---PE----AYVGRRLGIALAWDKDVEVAKRKAEMVAHMIELRTRSSD 419 (433)
T ss_dssp SCEEECHHHHTTSTT-EEEEECCC---SE----ECTTCEEEEEEEECSSHHHHHHHHHHHHHTCEEECTTSC
T ss_pred CcCcchHHHHhhCCC-cEEEEecC---CC----CCCCCeEEEEEEEeCCHHHHHHHHHHHHhheEEEeeccC
Confidence 111112211122222 13344321 11 245679999999999999999999999999999997544
No 21
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=100.00 E-value=4.6e-36 Score=353.75 Aligned_cols=352 Identities=18% Similarity=0.206 Sum_probs=267.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
++.|.+.|+++|+++++|+|+++++... ...+++.+++.|++++||+++++.+++||..+|++|+++|||+|++ ..+
T Consensus 52 ~~~d~~~l~~~a~~~~id~vv~g~e~~l-~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~--~~~ 128 (431)
T 3mjf_A 52 AATDIAGLLAFAQSHDIGLTIVGPEAPL-VIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEY--QNF 128 (431)
T ss_dssp CTTCHHHHHHHHHHTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCE--EEE
T ss_pred CcCCHHHHHHHHHHhCcCEEEECCchHH-HHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCe--Eee
Confidence 6789999999999999999999865311 1347788999999999999999999999999999999999999998 568
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEe
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLGD 180 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~d 180 (1080)
++.+++.+++++++||+||||..++||+||+++++.+|+.++++.+... ..|+ +..++|||||+| +|+++.++.|
T Consensus 129 ~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~--~~~g~~~~~vlvEe~i~G-~E~sv~~~~d 205 (431)
T 3mjf_A 129 TDVEAALAYVRQKGAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAG--NAFGDAGHRIVVEEFLDG-EEASFIVMVD 205 (431)
T ss_dssp SCHHHHHHHHHHHCSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTT--HHHHCCCCCEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhh--ccccCCCCeEEEEEeeCC-cEEEEEEEEc
Confidence 9999999999999999999999999999999999999999999887632 1233 358999999999 8999999988
Q ss_pred cCCcEEEEEe-eecccc------ccccEEEEEcCCCCCCHHHHHHHHHH----HHHHHHHcCC--cceEEEEEEEcCCCC
Q psy3968 181 KAGNVVHLYE-RDCSVQ------RRHQKVVEIAPAPHLDINVRNKMTDL----AVKLAKHVGY--SNAGTVEFLCDESGQ 247 (1080)
Q Consensus 181 ~~G~vv~l~~-r~~~~~------~~~~~~~~~~Pa~~l~~~~~~~l~~~----a~~i~~alg~--~G~~~vEfivd~dG~ 247 (1080)
++ +++.+.. ++.... .+......++|++.++++..+++.+. +.++++++|+ +|++++||+++++|+
T Consensus 206 g~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~~g~ 284 (431)
T 3mjf_A 206 GE-NVLPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISADGQ 284 (431)
T ss_dssp SS-CEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECTTSC
T ss_pred CC-EEEEEEeeEeceecccCCCCCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCCC
Confidence 65 5555422 111000 01112245779877999998888876 6777777665 799999999999888
Q ss_pred EEEEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEE
Q psy3968 248 FYFIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFR 326 (1080)
Q Consensus 248 ~~~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~ 326 (1080)
+||||+|||+|. +...+...+|+|+++++++++.|. ++++.+....-..-+..+....||.++..+.. ..|.-
T Consensus 285 ~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G~-l~~~~~~~~~~~a~~vv~a~~gyp~~~~~g~~-i~~~~---- 358 (431)
T 3mjf_A 285 PKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQGK-LNEKTSDWDERPSLGVVLAAGGYPADYRQGDV-IHGLP---- 358 (431)
T ss_dssp EEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTTC-GGGCCCCBCSSCEEEEEEEETTTTSCCCCCCB-CBCCC----
T ss_pred eEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcCC-CCCCCccccCCcEEEEEecCCCcCccCCCCCE-eeCCc----
Confidence 999999999985 345556789999999999999998 43332221111112333444456766655542 22211
Q ss_pred cCCcceEEEc-CCc-cCCC-ceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 327 SGEGMGIRLD-GAS-AFAG-AIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 327 ~~~~~gvr~d-~~~-~~~G-~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
....+++.+- .+. ...| ..++.+ +|++.|++.|+|.++|+++++++++.+++.|. ++||.+
T Consensus 359 ~~~~~~~~~~~ag~~~~~~~~~~~~g--gRv~~v~~~g~~~~~A~~~a~~~~~~i~~~~~~~r~dig~ 424 (431)
T 3mjf_A 359 QQEVKDGKVFHAGTKLNGNHEVVTNG--GRVLCVTALGETVAQAQQYAYQLAEGIQWEGVFCRKDIGY 424 (431)
T ss_dssp SSCBTTEEEEESSEEECTTSCEEECS--SEEEEEEEECSSHHHHHHHHHHHHTTCBCTTEECCSCTTH
T ss_pred cccCCCcEEEEeeeEecCCCEEEecC--CeEEEEEEecCCHHHHHHHHHHHhccCCCCCceeehhhHH
Confidence 0000122221 111 1234 666665 89999999999999999999999999999997 899986
No 22
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2.2e-36 Score=359.81 Aligned_cols=363 Identities=19% Similarity=0.264 Sum_probs=289.8
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccccc--HHHHHHHHHcCCcEeCCcHHHHHHhcC
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSER--SDFAQAVLDAGIRFIGPSPYVVQQMGD 79 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~--~~~a~~l~~~gi~~iGps~eai~~~~D 79 (1080)
+|+.+.||++|++++. +....+..++.|+++|+++++|+|+|+ +|+ ..+++.+++.|++ ||+++++..++|
T Consensus 67 ~p~~~~Ad~~~~~~~~-~~~~~~~~i~~I~~~a~~~~id~Vip~----sE~~l~~~a~~~e~~Gi~--g~~~~ai~~~~D 139 (474)
T 3vmm_A 67 LADFEHPDSIYWAHED-HNKPEEEVVEQIVKVAEMFGADAITTN----NELFIAPMAKACERLGLR--GAGVQAAENARD 139 (474)
T ss_dssp GGGGCCCSCCSSCCSC-CCCCHHHHHHHHHHHHHHTTCSEEEES----CGGGHHHHHHHHHHTTCC--CSCHHHHHHTTC
T ss_pred CcchhhcCeEEEecCC-CCCchHHHHHHHHHHHHHcCCCEEEEC----CcccHHHHHHHHHHcCCC--CCCHHHHHHhhC
Confidence 4678999999999653 223445678999999999999999994 345 6789999999998 999999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHH-----
Q psy3968 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKA----- 154 (1080)
Q Consensus 80 K~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~----- 154 (1080)
|..++++|+++|||+|++ ..+++.+++.++++++|||+||||..|+||+|++++++.+|+.++++.+.+.+..
T Consensus 140 K~~~k~~l~~~GIpvp~~--~~v~s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~ 217 (474)
T 3vmm_A 140 KNKMRDAFNKAGVKSIKN--KRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPK 217 (474)
T ss_dssp HHHHHHHHHHTTSCCCCE--EEECSHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCT
T ss_pred HHHHHHHHHHcCCCCCCe--EEECCHHHHHHHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999998 5789999999999999999999999999999999999999999999988776543
Q ss_pred --hcCCCcEEEeeccCCCc-----------EEEEEEE-EecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHH
Q psy3968 155 --AFGNGAMFIEKFIERPR-----------HIEVQLL-GDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMT 220 (1080)
Q Consensus 155 --~~g~~~vlVEeyI~G~~-----------ei~v~vl-~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~ 220 (1080)
.+ ++.++||+||+|.+ ++++..+ .++++..+.+.++.++.+ +++..+.+|+ .++++..+++.
T Consensus 218 a~~~-~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~~~--~~~~~~~~Pa-~l~~~~~~~l~ 293 (474)
T 3vmm_A 218 AVTF-EAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIG--FTETSHITPS-ILDEEAKKKIV 293 (474)
T ss_dssp TCCC-SCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEECCCBT--TBCCEEEESC-CCCHHHHHHHH
T ss_pred cccC-CCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeeccCCC--ccceEEEECC-CCCHHHHHHHH
Confidence 23 36899999999965 2888744 555555566677877655 6777889999 59999999999
Q ss_pred HHHHHHHHHcCCcceE-EEEEEEcCCCCEEEEEEeccCCC--CccchhcccCCCHHHHHHHHHc-CCCCCCCCCCccccc
Q psy3968 221 DLAVKLAKHVGYSNAG-TVEFLCDESGQFYFIEVNARLQV--EHTVTEEITGVDLVQSQIRVAE-GMTLPELGLTQEKIS 296 (1080)
Q Consensus 221 ~~a~~i~~alg~~G~~-~vEfivd~dG~~~~iEvNpR~~g--~~~~~e~~tGvdl~~~~l~~al-G~~l~~l~~~~~~i~ 296 (1080)
+.+.++++++|++|.+ |+||+++++|++||||||||++| ++++++.++|+|++++++++++ |.+++ +.+..+.
T Consensus 294 ~~a~~~~~alG~~g~~~~vef~~~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl~~~~i~~a~~G~~l~---~~~~~~~ 370 (474)
T 3vmm_A 294 EAAKKANEGLGLQNCATHTEIKLMKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDAD---LPDGLLD 370 (474)
T ss_dssp HHHHHHHHHHTCCSEEEEEEEEEEGGGEEEEEEEESSCCSTTHHHHHHHHHCCCHHHHHHHHHHHGGGSC---CCSSCCC
T ss_pred HHHHHHHHHcCCCCccEEEEEEEcCCCCEEEEEEeCCCCCCchHHHHHHHHCcCHHHHHHHHHcCCCCCC---CCccccc
Confidence 9999999999999988 69999998889999999999996 5788899999999999999999 99876 3444443
Q ss_pred -cCeEEEEeeeccCCCCCC--CCCCCCc--eEEEEcCCc----ceEEEcCCccCCCceec----cccCCeeEEEEEecCC
Q psy3968 297 -PQGFAIQCRVTTEDPAKN--FQPDTGR--IEVFRSGEG----MGIRLDGASAFAGAIIS----PYYDSLLVKVIAHAAD 363 (1080)
Q Consensus 297 -~~g~ai~~ri~ae~p~~~--f~p~~G~--i~~~~~~~~----~gvr~d~~~~~~G~~i~----~~~ds~l~~Via~G~t 363 (1080)
..+++..+++++..+... ..+..+. +..+.-|.+ ..+.++...+..|..+. ..|||-++-.+ .|.+
T Consensus 371 ~~~~~~~~~~~~p~~~~~~~~~p~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 449 (474)
T 3vmm_A 371 QEPYYVADCHLYPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFEL-KGSN 449 (474)
T ss_dssp CCSSEEEEEEECHHHHHHTTSSCTTCEEEEEEEEECCTTCCCTTCEEEEEEECCTTEEECTTSCGGGCCCEEEEE-EESC
T ss_pred CCCceeEEEEEeccccccccccCCcccceeecceecccceecccceEeeccCCCCCceEEEEeehhccCceeEEe-cccc
Confidence 357778888877664321 2222222 334444432 22333322233444332 45899888877 9999
Q ss_pred hHHHHHHHHHHhhccEEc
Q psy3968 364 LQSSCAKMNRALREFRVR 381 (1080)
Q Consensus 364 ~~eA~~~a~ral~~i~I~ 381 (1080)
+++..+.+++.++...+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (474)
T 3vmm_A 450 SQDVAESIRQIQQHAKLT 467 (474)
T ss_dssp HHHHHHHHHHHHHHCEEE
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999887764
No 23
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=100.00 E-value=4.5e-37 Score=398.20 Aligned_cols=359 Identities=19% Similarity=0.303 Sum_probs=291.5
Q ss_pred cchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCc-ccccH--HHHH--HHHHcCCcEeCCcHHHHHHh
Q psy3968 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGF-LSERS--DFAQ--AVLDAGIRFIGPSPYVVQQM 77 (1080)
Q Consensus 3 ~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~-lsE~~--~~a~--~l~~~gi~~iGps~eai~~~ 77 (1080)
++..+||+.|.. + +|.+.|.++++++++|+|+|++|+ ..++. .+++ .|++.|++++|++++++..+
T Consensus 56 ~~~~~ad~~~i~-p--------~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~ 126 (1073)
T 1a9x_A 56 TDPEMADATYIE-P--------IHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKA 126 (1073)
T ss_dssp GCGGGSSEEECS-C--------CCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred CChhhCcEEEEC-C--------CCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHh
Confidence 577889998843 1 478999999999999999999884 11111 1233 67889999999999999999
Q ss_pred cCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC
Q psy3968 78 GDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG 157 (1080)
Q Consensus 78 ~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g 157 (1080)
.||..++++|+++|||+|++ ..+++.+++.++++++|||+||||..|+||+|++++++.+|+.++++.+... ..
T Consensus 127 ~DK~~~k~~l~~~Gipvp~~--~~v~~~~ea~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~----~~ 200 (1073)
T 1a9x_A 127 EDRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDL----SP 200 (1073)
T ss_dssp HSHHHHHHHHHHTTCCCCSE--EEESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH----CT
T ss_pred hCHHHHHHHHHHCCcCCCCE--EEECCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhh----CC
Confidence 99999999999999999998 5689999999999999999999999999999999999999999999877653 23
Q ss_pred CCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecc--ccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCc-c
Q psy3968 158 NGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCS--VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYS-N 234 (1080)
Q Consensus 158 ~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~--~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~-G 234 (1080)
.++++||+||+|.+|++++++.|.+|+++.+...+.. ...+.+.....+|++.++++..+++.+.+.++++++|++ |
T Consensus 201 ~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~~~~~e~~dp~~v~~g~s~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G 280 (1073)
T 1a9x_A 201 TKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETG 280 (1073)
T ss_dssp TSCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSE
T ss_pred CCcEEEEEccCCCeEEEEEEEEeCCCCEEEEEEEecccCCccccCcEEEEecCCCCCHHHHHHHHHHHHHHHHHcCcccC
Confidence 5689999999998899999999988998876332110 011224566788987799999999999999999999999 9
Q ss_pred eEEEEEEEcC-CCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccC-CCC
Q psy3968 235 AGTVEFLCDE-SGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTE-DPA 312 (1080)
Q Consensus 235 ~~~vEfivd~-dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae-~p~ 312 (1080)
.+++||++++ +|++||||||||+++++.+++.++|+|+.+.++++++|.+++++. .+++.+ ++.
T Consensus 281 ~~~vdf~~~~~~g~~~viEiNpR~~~ss~l~~~atG~~l~~~~~~~a~G~~l~~~~--------------~~i~~~~~~a 346 (1073)
T 1a9x_A 281 GSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELM--------------NDITGGRTPA 346 (1073)
T ss_dssp EEEEEEEECTTTCCEEEEEEESSCCHHHHHHHHHHSCCHHHHHHHHHTTCCGGGSB--------------CTTTTTCSBS
T ss_pred ceEEEEEEECCCCCEEEEEecCCCCccHHHHHHHhCCCHHHHHHHHHcCCChHHhh--------------ccccCccCHH
Confidence 9999999998 688999999999999999999999999999999999999886432 122333 343
Q ss_pred CCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccC------
Q psy3968 313 KNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTN------ 386 (1080)
Q Consensus 313 ~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tn------ 386 (1080)
.|.|..+.+.. ..| +..++. ....+..+.+.++ .+|+|+++|+|+++|+++|.++++ +.++|+.+|
T Consensus 347 -~f~p~~~~v~~-~ip---~~~~~~-~~~~~~~~~~~~~-~~G~v~~~g~~~~ea~~ka~~~l~-~~~~g~~~~~~~~~~ 418 (1073)
T 1a9x_A 347 -SFEPSIDYVVT-KIP---RFNFEK-FAGANDRLTTQMK-SVGEVMAIGRTQQESLQKALRGLE-VGATGFDPKVSLDDP 418 (1073)
T ss_dssp -CSCCBCSSEEE-EEE---ECCGGG-CTTSCCBCCSSCC-CCEEEEEEESSHHHHHHHHHHHSS-SSCSSSCCSSCTTCT
T ss_pred -HcccCCCcEEE-Ecc---cccccc-cCCCCcccCCCcc-CcEEEEEEcCCHHHHHHHHHHhhc-ccccCcCcccccccc
Confidence 57788887632 222 122332 1223455566666 489999999999999999999997 889999644
Q ss_pred --HHHHHHhccccc
Q psy3968 387 --IPFLLNVLTNQK 398 (1080)
Q Consensus 387 --i~~l~~il~~~~ 398 (1080)
.+.+.+.|.+|.
T Consensus 419 ~~~~~~~~~l~~~~ 432 (1073)
T 1a9x_A 419 EALTKIRRELKDAG 432 (1073)
T ss_dssp THHHHHHHHHHTCB
T ss_pred ccHHHHHHHHhCCC
Confidence 678888999887
No 24
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=100.00 E-value=5.3e-36 Score=352.86 Aligned_cols=339 Identities=18% Similarity=0.258 Sum_probs=261.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
+|.|.+.|+++|+++++|+|+|+.+... ...+++.|++.|++++||+++++++++||..++++++++|||+|++ ..+
T Consensus 47 ~~~d~~~l~~~~~~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~ 123 (424)
T 2yw2_A 47 SPTDVEKLAEFAKNEGVDFTIVGPEAPL-VEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARY--EVF 123 (424)
T ss_dssp CTTCHHHHHHHHHHHTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCE--EEE
T ss_pred CcCCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCe--EEE
Confidence 6889999999999999999999754210 0146778889999999999999999999999999999999999998 568
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEe
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLGD 180 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~d 180 (1080)
++.+++.+++++++||+|+||..|+||+||++|++.+|+.++++.+... ..|+ +..+++|+||+| +|+++.++.+
T Consensus 124 ~~~~~~~~~~~~~~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~g-~E~sv~~~~~ 200 (424)
T 2yw2_A 124 TDFEKAKEYVEKVGAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNK--KIFGKSSERVVIEEFLEG-EEASYIVMIN 200 (424)
T ss_dssp SCHHHHHHHHHHHCSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-cEEEEEEEEc
Confidence 8999999999999999999999999999999999999999999887541 1233 258999999999 8999999986
Q ss_pred cCCcEEEEEeeecccccccc------------EEEEEcCCCCCCHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEE
Q psy3968 181 KAGNVVHLYERDCSVQRRHQ------------KVVEIAPAPHLDINVRNKMT-DLAVKLAKHV-----GYSNAGTVEFLC 242 (1080)
Q Consensus 181 ~~G~vv~l~~r~~~~~~~~~------------~~~~~~Pa~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEfiv 242 (1080)
+ +.+.... ..++++ .....+|++.+++++.+++. +++.++++++ +|.|++++||++
T Consensus 201 G--~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~ 274 (424)
T 2yw2_A 201 G--DRYVPLP----TSQDHKRLLDEDKGPNTGGMGAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRGFLYAGLMI 274 (424)
T ss_dssp T--TEEEECC----CBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEE
T ss_pred C--CEEEeec----ceeeccccccCCCCCCCCCCeeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEE
Confidence 3 4333211 111111 22346788668999888884 6777777765 788999999999
Q ss_pred cCCCCEEEEEEeccCCCC-ccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCc
Q psy3968 243 DESGQFYFIEVNARLQVE-HTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGR 321 (1080)
Q Consensus 243 d~dG~~~~iEvNpR~~g~-~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~ 321 (1080)
+++| +||+|+|||+++. +..+...+|+|+.+.+++++.|. ++++. ...++++.+++.++++.. .|..|.
T Consensus 275 ~~~g-~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~------~~~~~a~~~~~~~~g~~~--~~~~g~ 344 (424)
T 2yw2_A 275 TKEG-PKVLEFNVRLGDPEAQPILMRVKNDFLETLLNFYEGK-DVHIK------EDERYALDVVLASRGYPE--KPETGK 344 (424)
T ss_dssp ETTE-EEEEEEESSCCTTTHHHHHHTBCSCHHHHHHHHHTTC-CCCCC------BCSSEEEEEEEECTTTTS--SCCCCC
T ss_pred eCCC-cEEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCccc------ccCCcEEEEEEecCCCCC--CCCCCC
Confidence 9988 9999999999985 33456679999999999999997 55321 113567888887664322 233343
Q ss_pred -eEEEEcC-CcceEEEcCCccCCCc------eeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 322 -IEVFRSG-EGMGIRLDGASAFAGA------IISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 322 -i~~~~~~-~~~gvr~d~~~~~~G~------~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
+..+..+ ..+++++. ..|. .++.+ .++++|+++|+|+++|+++++++++.++++|+ ++||..
T Consensus 345 ~i~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~--~r~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~r~di~~ 416 (424)
T 2yw2_A 345 IIHGLDYLKSMEDVVVF----HAGTKKEGNFTVTSG--GRVLNVCAYGKTLKEAKERAYEAIRYVCFEGMHYRKDIGD 416 (424)
T ss_dssp BCBCHHHHHTSTTEEEE----ESSEEEETTEEEECS--SEEEEEEEEESSHHHHHHHHHHHHTTCBCTTCBCCSCTTT
T ss_pred cCcCcccccCCCCeEEE----EcceEeeCCEEEecC--CcEEEEEEEeCCHHHHHHHHHHHHhcceeCCcEEcchhhh
Confidence 2212111 12344441 1233 23333 69999999999999999999999999999998 888884
No 25
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=100.00 E-value=8.4e-36 Score=344.75 Aligned_cols=325 Identities=18% Similarity=0.280 Sum_probs=261.3
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++.++||+ +.. +|.|.+.++++| +++|+|++++++.. ..+++.+++.| ++||+++++.+++||.
T Consensus 34 ~~~~~~a~~-~~~--------~~~d~~~l~~~~--~~~d~v~~~~e~~~--~~~~~~l~~~g--~~g~~~~~~~~~~dK~ 98 (369)
T 3aw8_A 34 ACAGQVGEL-VVG--------EFLDEGALLRFA--EGLALVTYEFENVP--VEAARRLEGRL--PLYPPAKALEVAQDRL 98 (369)
T ss_dssp CGGGGTSEE-EEC--------CTTCHHHHHHHH--TTCSEEEECCTTCC--HHHHHHHHHHS--CBSSCHHHHHHHTCHH
T ss_pred ChHHHhhce-Eec--------CCCCHHHHHHHH--hCCCEEEECCCCcC--HHHHHHHHHcC--CcCCCHHHHHHhcCHH
Confidence 456677777 543 688999999999 68999999998654 67778888888 6799999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+|++|+++|||+|++ ..+++.+++.+++++++||+|+||..|+ ||+||++|++.+|+.++++.+ ++..
T Consensus 99 ~~k~~l~~~gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~--------~~~~ 168 (369)
T 3aw8_A 99 REKTFFQGLGVPTPPF--HPVDGPEDLEEGLKRVGLPALLKTRRGGYDGKGQALVRTEEEALEALKAL--------GGRG 168 (369)
T ss_dssp HHHHHHHHHTCCCCCE--EEESSHHHHHHHHTTTCSSEEEEECCC------EEEECSHHHHHHHHTTT--------CSSS
T ss_pred HHHHHHHHCCCCCCCc--eeeCCHHHHHHHHHHcCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc--------CCCc
Confidence 9999999999999998 5688999999999999999999999999 999999999999999887653 3568
Q ss_pred EEEeeccC-CCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEE
Q psy3968 161 MFIEKFIE-RPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239 (1080)
Q Consensus 161 vlVEeyI~-G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vE 239 (1080)
+++|+||+ | +|+++.++.+++|+++.+ ...+..++.+.......|++.++++..+++.+.+.++++++|++|.+++|
T Consensus 169 ~lvEe~i~~g-~e~sv~~~~d~~G~~~~~-~~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd 246 (369)
T 3aw8_A 169 LILEGFVPFD-REVSLLAVRGRTGEVAFY-PLVENRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDYVGVLALE 246 (369)
T ss_dssp EEEEECCCCS-EEEEEEEEECTTSCEEEC-CCEEEEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEEEcCCCC-EEEEEEEEECCCCCEEEE-CCeeeeeeCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEE
Confidence 99999999 6 999999999888887654 22233444555556788986699999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCC-CCCCCC
Q psy3968 240 FLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPA-KNFQPD 318 (1080)
Q Consensus 240 fivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~-~~f~p~ 318 (1080)
|++++ |++|++|+|||+++++..+..++|+|+++.+++.++|.+++... ..+.++.++++++++. ..+.
T Consensus 247 ~~~~~-~~~~viEiN~R~~~~~~~~~~~~g~~~~~~~~~~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~-- 316 (369)
T 3aw8_A 247 FFQVG-EELLFNEMAPRVHNSGHWTIEGAETSQFENHLRAVLGLPLGSTA-------PRGQSAMVNLIGEKPPFAEVL-- 316 (369)
T ss_dssp EEEET-TEEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCCCC-------BCSEEEEEEEESCCCCHHHHH--
T ss_pred EEEEC-CcEEEEEEeCCcCCccceeeeeecCCHHHHHHHHHcCCCCCCcc-------ccccEEEEEEeCCCchHHHhc--
Confidence 99997 77999999999999777777789999999999999999887432 2245778888876521 1111
Q ss_pred CCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccE
Q psy3968 319 TGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFR 379 (1080)
Q Consensus 319 ~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~ 379 (1080)
.. +++.+. .+ |..++++ .++|+|+++|+|+++|+++++++++.++
T Consensus 317 -------~~---p~~~~~---~~-g~~~~~~--~~lg~v~~~g~~~~ea~~~~~~~~~~i~ 361 (369)
T 3aw8_A 317 -------KV---EGAHLH---WY-GKAVRPG--RKVGHITLRRDGLKALEEGLARLSRLVS 361 (369)
T ss_dssp -------TS---TTEEEE---EC-CCCCCTT--CEEEEEEEEESSHHHHHHHHHHHHTTSS
T ss_pred -------cC---CCcEEE---Ee-cCCCCCC--CeEEEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 11 222221 12 2233343 7899999999999999999999999876
No 26
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=100.00 E-value=3.4e-36 Score=355.81 Aligned_cols=352 Identities=18% Similarity=0.174 Sum_probs=264.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
++.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++||+++++.+++||..+|++|+++|||+|++ ..+
T Consensus 68 ~~~d~~~l~~~a~~~~id~vv~g~E~~l-~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~--~~~ 144 (442)
T 3lp8_A 68 DINSTIEVIQVCKKEKIELVVIGPETPL-MNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKY--GYF 144 (442)
T ss_dssp CTTCHHHHHHHHHHTTCCEEEECSHHHH-HTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCE--EEE
T ss_pred CcCCHHHHHHHHHHhCCCEEEECCcHHH-HHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCE--EEE
Confidence 6789999999999999999999754211 0246788999999999999999999999999999999999999998 568
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEe
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLGD 180 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~d 180 (1080)
++.+++.+++++++||+|+||..++||+||+++++.+|+.++++.+... ..|+ ...++|||||+| +|+++.++.|
T Consensus 145 ~~~~ea~~~~~~~g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~--~~~g~~~~~vlvEe~i~G-~E~sv~~~~d 221 (442)
T 3lp8_A 145 VDTNSAYKFIDKHKLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVH--HKFGEAGCAIIIEEFLEG-KEISFFTLVD 221 (442)
T ss_dssp SSHHHHHHHHHHSCSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhh--cccCCCCCeEEEEEeecC-cEEEEEEEEC
Confidence 9999999999999999999999999999999999999999999887631 1243 258999999999 8999999988
Q ss_pred cCCcEEEEEe-eecccc------ccccEEEEEcCCCCCCHHHHHHHHHH----HHHHHHHcCC--cceEEEEEEEcCCCC
Q psy3968 181 KAGNVVHLYE-RDCSVQ------RRHQKVVEIAPAPHLDINVRNKMTDL----AVKLAKHVGY--SNAGTVEFLCDESGQ 247 (1080)
Q Consensus 181 ~~G~vv~l~~-r~~~~~------~~~~~~~~~~Pa~~l~~~~~~~l~~~----a~~i~~alg~--~G~~~vEfivd~dG~ 247 (1080)
++ .++.+.. ++.... .+.......+|++.++++..+++.+. +.++++++|+ +|++++||+++++|
T Consensus 222 g~-~~~~~~~~~~~~~~~~~~~g~~~gg~g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~~g- 299 (442)
T 3lp8_A 222 GS-NPVILGVAQDYKTIGDNNKGPNTGGMGSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKNE- 299 (442)
T ss_dssp SS-CEEEEEEEEECCEEEGGGEEEECSCSEEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE-
T ss_pred CC-eEEEeEEeEeeeecccCCCCCCCCCcEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC-
Confidence 54 4443322 211110 11122356789877999999998887 8889999887 79999999999888
Q ss_pred EEEEEEeccCCC-CccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEE
Q psy3968 248 FYFIEVNARLQV-EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFR 326 (1080)
Q Consensus 248 ~~~iEvNpR~~g-~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~ 326 (1080)
+||||+|||+++ ++..+...+|.|+++.+++++.|. ++++.+....-..-+..+....||..+..+.. ..|.- .
T Consensus 300 ~~viEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~-l~~~~~~~~~~~a~~vv~a~~gyp~~~~~g~~-i~g~~---~ 374 (442)
T 3lp8_A 300 PKLLEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGK-LGNESVELSKKAALCVVVASRGYPGEYKKNSI-INGIE---N 374 (442)
T ss_dssp EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTC-CSSCCCCBCSCEEEEEEEEETTTTSSCCSSCE-EBSHH---H
T ss_pred eEEEEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCC-CCCCCceeccCcEEEEEEccCCCCCCCCCCCE-eeCCc---c
Confidence 999999999997 466666778999999999999998 44333221111111222233345554443321 11110 0
Q ss_pred cCCcceEEEcC-Cc-cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 327 SGEGMGIRLDG-AS-AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 327 ~~~~~gvr~d~-~~-~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
....+++.+-. +. ...|..++.+ +|++.|++.|+|.++|+++++++++.++++|. ++||..
T Consensus 375 ~~~~~~~~~~~ag~~~~~~~~~~~g--gRv~~v~~~g~~~~~A~~~a~~~~~~i~~~~~~~r~dig~ 439 (442)
T 3lp8_A 375 IEKLPNVQLLHAGTRREGNNWVSDS--GRVINVVAQGENLASAKHQAYAALDLLDWPDGIYRYDIGS 439 (442)
T ss_dssp HHTCSSEEEEESSEEEETTEEEECS--SEEEEEEEEESSHHHHHHHHHHHHTTCBCTTEECCSCTTC
T ss_pred cccCCCcEEEEeeeeccCCeEEecC--CeEEEEEEecCCHHHHHHHHHHHhcccCCCCCcccCccCc
Confidence 00112222211 10 1234555555 79999999999999999999999999999997 888863
No 27
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=100.00 E-value=4.1e-36 Score=346.61 Aligned_cols=321 Identities=17% Similarity=0.175 Sum_probs=237.8
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
++++.++||++|+++ .+.|.+.++.+++ ++|+|+|++++..+...++..+++.+++ +||+++++++++||
T Consensus 35 ~~~~~~~aD~~~~~~-------~~~d~~~~~~~~~--~~D~v~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK 104 (363)
T 4ffl_A 35 QALIRNYADEFYCFD-------VIKEPEKLLELSK--RVDAVLPVNENLACIEFLNSIKEKFSCP-VLFDFEAYRISRDK 104 (363)
T ss_dssp TCTTTTTSSEEEECC-------TTTCHHHHHHHHT--SSSEEEECCCCHHHHHHHHHHGGGCSSC-BCCCHHHHHHHTSH
T ss_pred CChhHhhCCEEEECC-------CCcCHHHHHHHhc--CCCEEEECCCChhHHHHHHHHHHHCCCc-cCCCHHHHHHhhCH
Confidence 478899999999983 4567788877765 7999999999877666556666666665 68999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
..+|++|+++|+|+|++. .++||+|+||+.|+||+|++++++.+++.. ....
T Consensus 105 ~~~k~~l~~~gip~~~~~---------------~ig~P~vvKp~~g~g~~gv~~v~~~~~~~~-------------~~~~ 156 (363)
T 4ffl_A 105 KKSKDYFKSIGVPTPQDR---------------PSKPPYFVKPPCESSSVGARIIYDDKDLEG-------------LEPD 156 (363)
T ss_dssp HHHHHHHHHTTCCCCCBS---------------CSSSCEEEECSSCCTTTTCEEEC------C-------------CCTT
T ss_pred HHHHHHHHhcCCCCCCce---------------ecCCCEEEEECCCCCCcCeEEeccHHHhhh-------------hccc
Confidence 999999999999999873 258999999999999999999999988653 1457
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+| +|++++++.|+.+.++....+.+.......... .|++ .. +++.+.+.++++++||+|++++||
T Consensus 157 ~~~ee~i~g-~e~sv~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~p~~-~~----~~~~~~a~~~~~~l~~~G~~~vef 228 (363)
T 4ffl_A 157 TLVEEYVEG-EVVSLEVVGDGSHFAVVKETLVHIDETYDCHMV--TPLP-AN----PLFRQISHDLAANLPLKGIMDVEA 228 (363)
T ss_dssp CEEEECCCS-EEEEEEEEEESSCEEECCCEEEEECTTSCEEEE--EECC-CC----HHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred hhhhhhccC-cEEEEEEEEECCeEEEEEEEEeccCCcccceee--cchh-HH----HHHHHHHHHHHHhCCccceeeeee
Confidence 999999999 899999999987776665566665555554444 4443 23 467889999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCcc-chhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHT-VTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDT 319 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~-~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~ 319 (1080)
+++++| +||+|||||+++.++ +++.++|+|++++++++++|.+++... ....++++.+++.+... ..+.|..
T Consensus 229 ~~~~~~-~~viEiN~R~~g~~~~~~~~~~g~dl~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~ 301 (363)
T 4ffl_A 229 IFGPKG-LRVIEIDARFPSQTPTVVYYSSGINLIELLFRAFTDGVEEIRA-----IPENKYCIYEHLMFGEN-GVLIPVG 301 (363)
T ss_dssp EEETTE-EEEEEEECSCCSSHHHHHHHHHCCCHHHHHHHHTTTCCCCC---------CCCEEEEEEEEECGG-GBEEECC
T ss_pred EEeCCe-EEEEEEeCCCCCChHHHHHHHHCcCHHHHHHHHHCCCCCCccc-----cCCCceEEEEEEecCCC-CccCCCC
Confidence 999765 999999999998654 789999999999999999999775322 22334555555554332 1222322
Q ss_pred CceEEEEcCCcce-EEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEE
Q psy3968 320 GRIEVFRSGEGMG-IRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRV 380 (1080)
Q Consensus 320 G~i~~~~~~~~~g-vr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I 380 (1080)
+.+. ..+...+ ++...+ . ....+.+++++++|+++|+|++||++|++++++.++.
T Consensus 302 ~~~~--~~~~~~~~~~~~~~--~--~~~~~~~~~~v~~vi~~G~~~~eA~~k~~~al~~i~~ 357 (363)
T 4ffl_A 302 EQVL--SMGSDYGKFYEEPG--I--EIFLCKGEYPVFTMVFWGKDREETGAKRCKGLSVLKE 357 (363)
T ss_dssp HHHH--TTCSEEEEEEEETT--E--EEEEEESSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ceEE--ecCCCeeEEEecCC--C--CCEecCCCCceEEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 2210 0111111 111111 1 1223557789999999999999999999999998764
No 28
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=3e-35 Score=345.77 Aligned_cols=341 Identities=19% Similarity=0.247 Sum_probs=260.9
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
+|.|.+.|+++|+++++|+|+++.+... ...+++.+++.|++++||+++++++++||..++++++++|||+|++ ..+
T Consensus 46 ~~~d~~~l~~~~~~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~ 122 (417)
T 2ip4_A 46 WNGDVEALADWALAEGIDLTLVGPEAPL-VEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARY--RVF 122 (417)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEECSSHHH-HTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCE--EEE
T ss_pred CccCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCe--eee
Confidence 6889999999999999999999865321 1246778888999999999999999999999999999999999998 568
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecC
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~ 182 (1080)
++.+++.+++++++||+|+||..|+||+|++++++.+|+.++++.+.. ..++ ..+++|+||+| +|+++.++.+
T Consensus 123 ~~~~~~~~~~~~~~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~---~~~~-~~~lvEe~i~g-~E~sv~~~~~-- 195 (417)
T 2ip4_A 123 REPLEALAYLEEVGVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILN---RAEG-GEVVVEEYLEG-EEATVLALTD-- 195 (417)
T ss_dssp SSHHHHHHHHHHHCSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTT---SSSC-CCEEEEECCCS-CEEEEEEEES--
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHh---hccC-CeEEEEECccC-cEEEEEEEEe--
Confidence 899999999999999999999999999999999999999999887641 1233 68999999999 7999999985
Q ss_pred CcEEEEEe--eecccc------ccccEEEEEcCCCCCCHHHHHHH-HHHHHHHHHHc-----CCcceEEEEEEEcCCCCE
Q psy3968 183 GNVVHLYE--RDCSVQ------RRHQKVVEIAPAPHLDINVRNKM-TDLAVKLAKHV-----GYSNAGTVEFLCDESGQF 248 (1080)
Q Consensus 183 G~vv~l~~--r~~~~~------~~~~~~~~~~Pa~~l~~~~~~~l-~~~a~~i~~al-----g~~G~~~vEfivd~dG~~ 248 (1080)
|+.+..+. +..... .+........|++ ++++..+++ .+++.++++++ +|.|++++||+++++| +
T Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~-l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~ 273 (417)
T 2ip4_A 196 GETILPLLPSQDHKRLLDGDQGPMTGGMGAVAPYP-MDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTREG-P 273 (417)
T ss_dssp SSCEEECCCBEECCEEETTTEEEECSCSEEEESCC-CCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECSSC-E
T ss_pred CCEEEEcchheechhhccCCCCCcCCCCeeeeCCC-CCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeCCC-e
Confidence 34333211 111000 0111223568886 999888888 66677777775 7889999999999988 9
Q ss_pred EEEEEeccCCCCcc-chhcccCCCHHHHHHHHHcCCCCCCCCCCccccc-cCeEEEEeeeccCCCCCCCCCCCCc-eEEE
Q psy3968 249 YFIEVNARLQVEHT-VTEEITGVDLVQSQIRVAEGMTLPELGLTQEKIS-PQGFAIQCRVTTEDPAKNFQPDTGR-IEVF 325 (1080)
Q Consensus 249 ~~iEvNpR~~g~~~-~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~-~~g~ai~~ri~ae~p~~~f~p~~G~-i~~~ 325 (1080)
||+|+|||+++... .+...+|+|+.+.+++++.|. +++.. +. ..++++.+++.++++.. .|..|. +..+
T Consensus 274 ~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~-----~~~~~~~~~~~~l~~~~~~~--~~~~g~~i~~~ 345 (417)
T 2ip4_A 274 KVLEFNARFGDPEAQALLPLLENDLVELALRVAEGR-LAGTR-----LSWKEGAAACVVLAAPGYPE--SPRKGIPLHVP 345 (417)
T ss_dssp EEEEEESSCCTTHHHHHTTTBCSCHHHHHHHHHHTC-GGGCC-----CCBCSSEEEEEEEECTTTTT--SCCCCCBCBCC
T ss_pred EEEEEecCCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcCC-----ccccCCcEEEEEEeCCCCCC--CCCCCCccccc
Confidence 99999999998633 345579999999999999997 44322 12 12567778777665432 234454 3322
Q ss_pred EcCCcceEEEcCCccCCCceec----cccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 326 RSGEGMGIRLDGASAFAGAIIS----PYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 326 ~~~~~~gvr~d~~~~~~G~~i~----~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
..+ +++++. ..|..++ ....+|+|+|++.|+|+++|+++++++++.++++|. ++||..
T Consensus 346 ~~~--~~v~~~----~~g~~~~~~~~~~~~~rv~~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~r~dig~ 409 (417)
T 2ip4_A 346 EPP--EGVLVF----HAGTRREGGRLVSAGGRVLNVVGLGRDLKEALERAYAYIPQVGFPGAVYRRDIGR 409 (417)
T ss_dssp CCC--TTEEEE----ESSEEESSSSEEECSSEEEEEEEEESSHHHHHHHHHHHGGGSBCTTCBCCSCTTH
T ss_pred CCC--CCeEEE----ECceEeeCCeEEecCCcEEEEEEEcCCHHHHHHHHHHHHhcCccCCcEEccchhh
Confidence 222 344432 1344321 111258999999999999999999999999999997 899985
No 29
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=100.00 E-value=3.4e-35 Score=344.86 Aligned_cols=339 Identities=18% Similarity=0.171 Sum_probs=265.6
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
++++.++||+++.. +|.|.+.|.++++ ++|+|+++++ ..+..+++.+++. .++||+++++.+++||
T Consensus 69 ~~p~~~~ad~~~~~--------~~~d~~~l~~~a~--~~D~V~~~~e--~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK 134 (419)
T 4e4t_A 69 ASPAGAVADRHLRA--------AYDDEAALAELAG--LCEAVSTEFE--NVPAASLDFLART--TFVAPAGRCVAVAQDR 134 (419)
T ss_dssp TCHHHHHSSEEECC--------CTTCHHHHHHHHH--HCSEEEECCT--TCCHHHHHHHHTT--SEESSCHHHHHHHTCH
T ss_pred cCchhhhCCEEEEC--------CcCCHHHHHHHHh--cCCEEEEccC--cCCHHHHHHHHcc--CCcCCCHHHHHHhcCH
Confidence 36788899998864 7899999999994 6999997655 3457778888776 4889999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH----hCCcEEEEeC-CCCCCcCeEEECCHhHHHHHHHHHHHHHHHh
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK----YGLPVIFKAA-YGGGGRGMRVVRKMEDVEENFQRASSEAKAA 155 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~----igfPvVVKP~-~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~ 155 (1080)
..+|++|+++|||+|++ ..+++.+++.+++++ + ||+|+||. .|++|+|+++|++.+|+.++++.+
T Consensus 135 ~~~k~~l~~~Gip~p~~--~~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~------- 204 (419)
T 4e4t_A 135 IAEKRFIEASGVPVAPH--VVIESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL------- 204 (419)
T ss_dssp HHHHHHHHHTTCCBCCE--EEECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT-------
T ss_pred HHHHHHHHHcCcCCCCe--EEECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc-------
Confidence 99999999999999998 568999999988888 9 99999999 888999999999999999988653
Q ss_pred cCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcce
Q psy3968 156 FGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNA 235 (1080)
Q Consensus 156 ~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~ 235 (1080)
++..+++|+||++.+|+++.++.+.+|++..+...+ ...+.......+.|++.++++..+++.+++.+++++||+.|.
T Consensus 205 -~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~~~e-~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~ 282 (419)
T 4e4t_A 205 -GGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQ-NVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGV 282 (419)
T ss_dssp -TTCCEEEEECCCEEEEEEEEEEECTTSCEEECCCEE-EEEETTEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred -CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEEeCeE-EEeeCCeEEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeE
Confidence 467899999999769999999999888876642211 122223333447798669999999999999999999999999
Q ss_pred EEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCC---
Q psy3968 236 GTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPA--- 312 (1080)
Q Consensus 236 ~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~--- 312 (1080)
+++||+++++|++||+|||||+++++.++..++|+|+++.++++++|.|+++..+. ..++...+......
T Consensus 283 ~~vE~~~~~dG~~~v~EiNpR~~~sg~~t~~~~~~s~~~~~~ra~~G~pl~~~~~~-------~~~~m~n~lg~~~~~~~ 355 (419)
T 4e4t_A 283 LCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNPRQH-------SPAAMLNILGDVWFPNG 355 (419)
T ss_dssp EEEEEEEETTCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCCCCBC-------SCEEEEEEEGGGGCTTC
T ss_pred EEEEEEEeCCCCEEEEEEeCCCCCCCCeEeeccCCCHHHHHHHHHcCCCCCCcccc-------CCeEEEEEecCcccccc
Confidence 99999999989999999999999998898889999999999999999999754432 11344444432100
Q ss_pred -CCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEE
Q psy3968 313 -KNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRV 380 (1080)
Q Consensus 313 -~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I 380 (1080)
.+.....+.-... ..+|+.+.. |......++ .++|+|++.|+|.++|+++++++.+.++|
T Consensus 356 ~~~~~~~~~~~~~l---~~p~~~~~~---ygk~~~~~~--rkmGhv~~~~~~~~~~~~~a~~~~~~l~~ 416 (419)
T 4e4t_A 356 AAAGAVTPPWDTVA---AMPAAHLHL---YGKEEARVG--RKMGHVNFTAEMRDDAVAAATACAQLLRV 416 (419)
T ss_dssp GGGCCCCCCHHHHH---TSTTEEEEE---CCCSCCCTT--CEEEEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred ccccccchHHHHHH---hCCCCEEEE---CCCCCCCCC--CceEEEEEEeCCHHHHHHHHHHHHHhcCc
Confidence 0000011211111 233444321 323233344 68999999999999999999999987764
No 30
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=100.00 E-value=8.8e-35 Score=339.97 Aligned_cols=339 Identities=15% Similarity=0.179 Sum_probs=268.1
Q ss_pred CCcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 1 ~s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
++++.++||+.+.+ ..+|.|.+.|.+++++ +|+|.+..+... ..+++.+++ |++ +||+++++.++.||
T Consensus 57 ~~p~~~~ad~~~~~------~~~~~d~~~l~~~a~~--~d~i~~e~e~~~--~~~l~~l~~-g~~-v~p~~~a~~~~~dK 124 (403)
T 3k5i_A 57 NSPAKQISAHDGHV------TGSFKEREAVRQLAKT--CDVVTAEIEHVD--TYALEEVAS-EVK-IEPSWQAIRTIQNK 124 (403)
T ss_dssp TCTTGGGCCSSCCE------ESCTTCHHHHHHHHTT--CSEEEESSSCSC--HHHHHHHTT-TSE-ESSCHHHHHHHTSH
T ss_pred CCcHHHhcccccee------ecCCCCHHHHHHHHHh--CCEEEECCCCCC--HHHHHHHHc-CCc-cCcCHHHHHHhcCH
Confidence 35777888842211 1489999999999985 789988766543 667788888 998 79999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCC--CHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPIT--TTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFG 157 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~--s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g 157 (1080)
..+|++|+++|||+|++ ..+. +.+++.++++++|||+|+||..|+ +|+|++++++.+|+.++++.+ +
T Consensus 125 ~~~k~~l~~~Gip~p~~--~~~~~~~~~~~~~~~~~~g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~--------~ 194 (403)
T 3k5i_A 125 FNQKEHLRKYGIPMAEH--RELVENTPAELAKVGEQLGYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL--------K 194 (403)
T ss_dssp HHHHHHHHTTTCCBCCE--EEESSCCHHHHHHHHHHHCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT--------T
T ss_pred HHHHHHHHHCCcCCCCE--EEEcCCCHHHHHHHHHHhCCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc--------C
Confidence 99999999999999998 4566 999999999999999999999998 999999999999999988653 3
Q ss_pred CCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEE
Q psy3968 158 NGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT 237 (1080)
Q Consensus 158 ~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~ 237 (1080)
+..+++|+||++.+|+++.++.+++| +..+...+..++.+.......|++.++++..+++.+.+.+++++||++|.++
T Consensus 195 ~~~~lvEe~i~~~~E~sv~v~~~~~g--~~~~p~~~~~~~~g~~~~~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ 272 (403)
T 3k5i_A 195 DRPLYAEKWAYFKMELAVIVVKTKDE--VLSYPTVETVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDGKGVFG 272 (403)
T ss_dssp TSCEEEEECCCEEEEEEEEEEECSSC--EEECCCEEEEEETTEEEEEEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCcEEEecCCCCCeEEEEEEEEcCCC--EEEeCCeeeEEeCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEE
Confidence 57899999999559999999998877 4556665666677777778889966999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCC
Q psy3968 238 VEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQP 317 (1080)
Q Consensus 238 vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p 317 (1080)
+||+++++|++||+|||||++++..++...+|+|+++.++++++|.|+++.. ....+.++...+..++... ..
T Consensus 273 ve~~~~~dg~~~v~EiNpR~~~sg~~~~~~~~~s~~~~~~ra~~G~pl~~~~-----~~~~~~a~m~nilg~~~~~--~~ 345 (403)
T 3k5i_A 273 VEMFLLEDDSIMLCEIASRIHNSGHYTIEGCALSQFDAHLRAILDLPIPAQS-----LEIRQPSIMLNIIGGAAPD--TH 345 (403)
T ss_dssp EEEEEETTSCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCGGG-----GSBSSCEEEEEEECCSSSS--HH
T ss_pred EEEEEeCCCcEEEEEeecCCCCCCceeeeecCCCHHHHHHHHHcCCCCCccc-----ccCCCcEEEEEEecCCccc--cc
Confidence 9999998899999999999999755666678999999999999999987432 2223346666666543210 00
Q ss_pred CCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhcc
Q psy3968 318 DTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREF 378 (1080)
Q Consensus 318 ~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i 378 (1080)
..+.-. .-..|++.+. .|.+....++ .++|+|++.|+|.++|+++++++++.+
T Consensus 346 ~~~~~~---~~~~p~~~~~---~ygk~~~~~~--rkmGhv~~~~~~~~~~~~~a~~~~~~~ 398 (403)
T 3k5i_A 346 LQAAEC---ALSIPNASIH---LYSKGAAKPG--RKMGHITVTAPTMHEAETHIQPLIDVV 398 (403)
T ss_dssp HHHHHH---HTTSTTEEEE---ECCCCSCCTT--CEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhHHHH---HhcCCCCEEE---ECCCCCCCCC--CeeEEEEEEcCCHHHHHHHHHHHHhhh
Confidence 001001 1123344332 1323234444 689999999999999999999998764
No 31
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=100.00 E-value=2.4e-35 Score=346.03 Aligned_cols=337 Identities=17% Similarity=0.164 Sum_probs=251.6
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCC
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITT 104 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s 104 (1080)
+|.+.|+++|+++++|+|+++.+ +..++..++..+. ++||+++++.+++||..+|++|+++|||+|++ ..+++
T Consensus 57 id~~~l~~~~~~~~~d~V~~~~E----~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~~~ 129 (412)
T 1vkz_A 57 HPYEGEKTLKAIPEEDIVIPGSE----EFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARF--EVAET 129 (412)
T ss_dssp CCCCTHHHHHTSCSSCEECCSSG----GGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCE--EEESS
T ss_pred CCHHHHHHHHHHcCCCEEEECCc----HHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCE--EEECC
Confidence 56889999999999999999643 3434566777777 88999999999999999999999999999998 56899
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC-CcEEEeeccCCCcEEEEEEEEecCC
Q psy3968 105 TEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN-GAMFIEKFIERPRHIEVQLLGDKAG 183 (1080)
Q Consensus 105 ~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~-~~vlVEeyI~G~~ei~v~vl~d~~G 183 (1080)
.+++.+++++++||+||||..++||+||++|++.+|+.++++.+...+. .|++ +.++||+||+| +|++++++.|++
T Consensus 130 ~~e~~~~~~~~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~-~~g~~~~vlvEe~i~G-~E~sv~~~~dg~- 206 (412)
T 1vkz_A 130 PEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGEL-IKGVKGPVVIDEFLAG-NELSAMAVVNGR- 206 (412)
T ss_dssp HHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSS-STTCCSCEEEEECCCS-EEEEEEEEEETT-
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcc-ccCCCCeEEEEECCcC-cEEEEEEEECCC-
Confidence 9999999999999999999999999999999999999999988764210 2443 48999999998 999999998644
Q ss_pred cEEEEEeeecccccc--------ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-----CCcceEEEEEEEcCCCCEEE
Q psy3968 184 NVVHLYERDCSVQRR--------HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-----GYSNAGTVEFLCDESGQFYF 250 (1080)
Q Consensus 184 ~vv~l~~r~~~~~~~--------~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-----g~~G~~~vEfivd~dG~~~~ 250 (1080)
.++.+ ...+..++. ......++|++ ++++..+++.+++.+++++| +|.|++++||+++++| +||
T Consensus 207 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~P~~-l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g-~~v 283 (412)
T 1vkz_A 207 NFVIL-PFVRDYKRLMDGDRGPNTGGMGSWGPVE-IPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGD-PYI 283 (412)
T ss_dssp EEEEC-CCCEECCEEETTTEEEECSCSEEEECCC-CCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEETTE-EEE
T ss_pred EEEEe-eeeEeeeeccCCCCCCCCCCceEEECCC-CCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEECCC-cEE
Confidence 23332 211111111 12234678986 99999999999999999999 8899999999999888 999
Q ss_pred EEEeccCCCC-ccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCC
Q psy3968 251 IEVNARLQVE-HTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGE 329 (1080)
Q Consensus 251 iEvNpR~~g~-~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~ 329 (1080)
+|+|||+++. +..+...+|+|+.+.+++++.|. ++++.+ . .++++.. +++.++. .+.|..|.+..+..|.
T Consensus 284 iEiN~R~g~~~~~~~~~~~g~d~~~~~~~~~~g~-l~~~~~-----~-~~~a~~~-~l~~~~~-~~~~~~g~~i~l~~~~ 354 (412)
T 1vkz_A 284 LEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGG-KMEPVE-----P-RGFAVDV-VLAARGY-PDAPEKGKEITLPEEG 354 (412)
T ss_dssp EEEESSCCTTHHHHHHHHCHHHHHHHHHHHHHTS-CCCCCC-----C-CSEEEEE-EEECTTT-TTSCCCCCBCBCCSSC
T ss_pred EEEecCCCCCcceeehhhcCCCHHHHHHHHhcCC-Cccccc-----c-CCeEEEE-EEecCCC-CCCCCCCCEeeeCCCC
Confidence 9999999985 44456669999999999999886 543321 1 2355444 4433221 1223455422122221
Q ss_pred cceEEEcCCcc-CCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHH
Q psy3968 330 GMGIRLDGASA-FAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIP 388 (1080)
Q Consensus 330 ~~gvr~d~~~~-~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~ 388 (1080)
.+.. .+.. ..+..+++ .+++|+|+++|+|+++|+++++++++.++++|+ ++||.
T Consensus 355 --~v~~-~g~~~~~~~~~~~--~~~vg~v~~~g~~~~ea~~~~~~~~~~i~~~g~~~r~di~ 411 (412)
T 1vkz_A 355 --LIFF-AGVAEKDGKLVTN--GGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDIA 411 (412)
T ss_dssp --CEEE-SSEEEETTEEEEC--SSEEEEEEEEESSHHHHHHHHHHHHHHCBCTTCBCCTTCC
T ss_pred --cEEE-CcccccCCeEEeC--CCcEEEEEEeCCCHHHHHHHHHHHhcceeeCCCEecCCCC
Confidence 1222 1111 01222333 379999999999999999999999999999998 88875
No 32
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=344.58 Aligned_cols=346 Identities=18% Similarity=0.270 Sum_probs=258.2
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
+|.|.+.++++|+++++|+|+++.+... ...+++.|++.|++++||+++++++++||..++++++++|||+|++ ..+
T Consensus 73 ~~~d~~~l~~~~~~~~~d~V~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~ 149 (452)
T 2qk4_A 73 SISDHTALAQFCKEKKIEFVVVGPEAPL-AAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQW--KAF 149 (452)
T ss_dssp CSSCHHHHHHHHHHHTCCEEEECSSHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCE--EEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCcHHH-HHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCe--EEE
Confidence 6889999999999999999999765311 1246778888999999999999999999999999999999999998 468
Q ss_pred CCHHHHHHHHHHhCCc-EEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEE
Q psy3968 103 TTTEEAMEFCLKYGLP-VIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLG 179 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfP-vVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~ 179 (1080)
++.+++.+++++++|| +|+||..|+||+|+++|++.+|+.++++.+... ..|+ +..++||+||+| +|+++.++.
T Consensus 150 ~~~~~~~~~~~~~g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~G-~E~sv~~~~ 226 (452)
T 2qk4_A 150 TKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQE--KAFGAAGETIVIEELLDG-EEVSCLCFT 226 (452)
T ss_dssp SSHHHHHHHHHHCSSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC---------CCEEEEECCCS-EEEEEEEEE
T ss_pred CCHHHHHHHHHhCCCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-CeEEEEEEE
Confidence 8999999999999999 999999999999999999999999998876541 1233 368999999998 899999998
Q ss_pred ecCCcEEEEEe-eec-ccc-----ccccEEEEEcCCCCCCHHHHHHHH-HHHHHHHHHc-----CCcceEEEEEEEcCCC
Q psy3968 180 DKAGNVVHLYE-RDC-SVQ-----RRHQKVVEIAPAPHLDINVRNKMT-DLAVKLAKHV-----GYSNAGTVEFLCDESG 246 (1080)
Q Consensus 180 d~~G~vv~l~~-r~~-~~~-----~~~~~~~~~~Pa~~l~~~~~~~l~-~~a~~i~~al-----g~~G~~~vEfivd~dG 246 (1080)
+++ .++.+.. +.. ... ..........|++.+++++.+++. +++.+++++| +|.|++++||+++++|
T Consensus 227 dG~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~~g 305 (452)
T 2qk4_A 227 DGK-TVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKNG 305 (452)
T ss_dssp CSS-CEEECCCBEEEEEEETTTEEEEEEEEEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEETTE
T ss_pred CCC-EEEEcceeeecccccCCCCCCCCCCceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 533 2443321 110 000 111223456788668998888886 5777777665 6789999999999988
Q ss_pred CEEEEEEeccCCCCcc-chhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeE-EEEeeeccCCCCCCCCCCCC-ceE
Q psy3968 247 QFYFIEVNARLQVEHT-VTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGF-AIQCRVTTEDPAKNFQPDTG-RIE 323 (1080)
Q Consensus 247 ~~~~iEvNpR~~g~~~-~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~-ai~~ri~ae~p~~~f~p~~G-~i~ 323 (1080)
+||+|+|||+++... .+...+|+|+.+.+++++.|. +++..+. . ..++ ++.+++.++++.. .|..| .+.
T Consensus 306 -~~viEiN~R~~~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~---~-~~~~~a~~~~l~~~g~~~--~~~~g~~i~ 377 (452)
T 2qk4_A 306 -PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLDGL-LCTSLPV---W-LENHTALTVVMASKGYPG--DYTKGVEIT 377 (452)
T ss_dssp -EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-GGGGCCC---B-CTTCEEEEEEEECTTTTS--SCCCSCBCB
T ss_pred -cEEEEEeccCCCcHHHHHHHHhCCCHHHHHHHHHcCC-CCcccce---e-cCCCcEEEEEEECCCCCC--CCCCCCccc
Confidence 999999999998533 355678999999999999987 5432211 1 1244 7788887765432 23445 233
Q ss_pred EEEcCCcceEEEcCCccCCCce------eccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 324 VFRSGEGMGIRLDGASAFAGAI------ISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 324 ~~~~~~~~gvr~d~~~~~~G~~------i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
.+..+..+++++. ..|.. ++.+ .++++|+++|+|+++|+++++++++.++++|. ++||..
T Consensus 378 ~l~~~~~~~v~~~----~~G~~~~~~~~~~~~--~rv~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~r~di~~ 445 (452)
T 2qk4_A 378 GFPEAQALGLEVF----HAGTALKNGKVVTHG--GRVLAVTAIRENLISALEEAKKGLAAIKFEGAIYRKDIGF 445 (452)
T ss_dssp CHHHHHHTTCEEE----ESSEEEETTEEEECS--SEEEEEEEEESSHHHHHHHHHHHHHHCBCTTCBCCSCTTH
T ss_pred CccccCCCCcEEE----ECcEEeeCCeEEecC--CeEEEEEEecCCHHHHHHHHHHHHhhcccCCcEEchhcch
Confidence 2222112344431 23333 3333 68999999999999999999999999999998 899985
No 33
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-34 Score=332.24 Aligned_cols=332 Identities=18% Similarity=0.248 Sum_probs=253.0
Q ss_pred cchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHH
Q psy3968 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVA 82 (1080)
Q Consensus 3 ~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~ 82 (1080)
++.++||+.+.+ +|.|.+.+.+++ .++|+|+++++... ..+++.+++.|++ ++|+++++.+++||..
T Consensus 37 ~~~~~~~~~~~~--------~~~d~~~l~~~~--~~~d~v~~~~e~~~--~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~ 103 (380)
T 3ax6_A 37 PAGQVADEQIVA--------GFFDSERIEDLV--KGSDVTTYDLEHID--VQTLKKLYNEGYK-IHPSPYTLEIIQDKFV 103 (380)
T ss_dssp TTGGGSSEEEEC--------CTTCHHHHHHHH--HTCSEEEESCSCSC--HHHHHHHHHTTCE-ESSCHHHHHHHHSHHH
T ss_pred chhhhCceEEEC--------CCCCHHHHHHHH--hcCCEEEecccCCC--HHHHHHHHHCCCe-ECCCHHHHHHhcCHHH
Confidence 456678877765 577899999999 57999999987554 5677888899998 5799999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcE
Q psy3968 83 ARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAM 161 (1080)
Q Consensus 83 ~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~v 161 (1080)
++++|+++|||+|++ ..+++.++ ++++++||+|+||..|+ ||+|++++++.+|+.++++ ..+
T Consensus 104 ~~~~l~~~gip~p~~--~~~~~~~~---~~~~~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~------------~~~ 166 (380)
T 3ax6_A 104 QKEFLKKNGIPVPEY--KLVKDLES---DVREFGFPVVQKARKGGYDGRGVFIIKNEKDLENAIK------------GET 166 (380)
T ss_dssp HHHHHHHTTCCCCCE--EECSSHHH---HHHTTCSSEEEEESCCC-----EEEECSGGGGGGCCC------------SSE
T ss_pred HHHHHHHcCCCCCCe--EEeCCHHH---HHHhcCCCEEEEecCCCCCCCCeEEECCHHHHHHHhc------------CCE
Confidence 999999999999998 46788877 67789999999999999 9999999999999876543 579
Q ss_pred EEeeccC-CCcEEEEEEEEecCCcEEEEEeeeccc--cccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Q psy3968 162 FIEKFIE-RPRHIEVQLLGDKAGNVVHLYERDCSV--QRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTV 238 (1080)
Q Consensus 162 lVEeyI~-G~~ei~v~vl~d~~G~vv~l~~r~~~~--~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 238 (1080)
++|+||+ | +|+++.++.+++|++..+... ... .+.+.......|++ ++++..+++.+.+.++++++|++|.+++
T Consensus 167 lvEe~i~~g-~e~sv~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~p~~-l~~~~~~~~~~~a~~~~~~lg~~G~~~v 243 (380)
T 3ax6_A 167 YLEEFVEIE-KELAVMVARNEKGEIACYPVV-EMYFDEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEGVGIFGI 243 (380)
T ss_dssp EEEECCCEE-EEEEEEEEECSSCCEEEEEEE-EEC--------CEEEESCS-SCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEeccCCC-eeEEEEEEECCCCCEEEECCe-eeeecccCCeeEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 9999999 6 999999999878876654222 122 23333344577885 8999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCC-
Q psy3968 239 EFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQP- 317 (1080)
Q Consensus 239 Efivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p- 317 (1080)
||+++++|++||+|+|||++++...+..++|+|+++.+++.++|.+++..... .. ++.+++++.+...+..+
T Consensus 244 d~~~~~~g~~~viEiN~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------~~-~~~~~~l~~~~~~~~~~~ 316 (380)
T 3ax6_A 244 EMFLTKQGEILVNEIAPRPHNSGHYTIEACVTSQFEQHIRAIMNLPLGSTELL------IP-AVMVNLLGEEGYYGKPAL 316 (380)
T ss_dssp EEEEETTSCEEEEEEESSCCGGGTHHHHHBSSCHHHHHHHHHTTCCCCCCCBC------SC-EEEEEEEBCTTCCBSEEE
T ss_pred EEEEeCCCcEEEEEecCCCCCCceeehhhccccHHHHHHHHHhCCCCCCcccc------Cc-eEEEEEeccccccccccc
Confidence 99999989999999999999977777778999999999999999988753321 12 45566665443101111
Q ss_pred CCCceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc
Q psy3968 318 DTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV 383 (1080)
Q Consensus 318 ~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv 383 (1080)
..| +..+ ..+++++.. .|...+. ...++|+|++.|+|+++|+++++++++.++++-.
T Consensus 317 ~~~-~~~~---~~p~~~~~~----~g~~~~~-~~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~~ 373 (380)
T 3ax6_A 317 IGL-EEAL---AIEGLSLHF----YGKKETR-PYRKMGHFTVVDRDVERALEKALRAKKILKVVSE 373 (380)
T ss_dssp ESH-HHHH---TSTTEEEEE----CCCSCBC-BTCEEEEEEEECSSHHHHHHHHHHHTTTCEEEEC
T ss_pred chh-HHHh---cCCCCEEEe----cCCCCCC-CCCeeEEEEEEeCCHHHHHHHHHHHHhhhhhhcC
Confidence 122 1111 223443322 2222222 2368999999999999999999999999988643
No 34
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=100.00 E-value=9.6e-34 Score=336.27 Aligned_cols=343 Identities=19% Similarity=0.247 Sum_probs=251.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
++.|.+.++++|+++++|+|+++.+... ...+++.+++.|++++||+++++++++||..++++|+++|||+|++ ..+
T Consensus 68 ~~~d~~~l~~~~~~~~~d~vi~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~ 144 (451)
T 2yrx_A 68 DELDIEALVQFAKQQAIDLTIVGPEAPL-ASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADH--AAF 144 (451)
T ss_dssp CTTCHHHHHHHHHHTTCSEEEECSHHHH-HTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCE--EEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCchHH-HHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCe--EEE
Confidence 6789999999999999999999765211 1246777888999999999999999999999999999999999998 568
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEe
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLGD 180 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~d 180 (1080)
++.+++.+++++++||+|+||..|+||+||++|++.+|+.++++.+... ..|+ +..++||+||+| +|+++.++.+
T Consensus 145 ~~~~~~~~~~~~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~G-~E~sv~~~~d 221 (451)
T 2yrx_A 145 TSYEEAKAYIEQKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVD--GQFGTAGSQVVIEEYLEG-EEFSFMAFVN 221 (451)
T ss_dssp SCHHHHHHHHHHHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHH--SCCBTTBCCEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHhcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhc--cccCCCCCeEEEEECCcC-cEEEEEEEEc
Confidence 9999999999999999999999999999999999999999999887652 2244 368999999999 8999999986
Q ss_pred cCCcEEEEEe--eecc-c-----cccccEEEEEcCCCCCCHHHHHHH-HHHHHHHHHHc-----CCcceEEEEEEEcCCC
Q psy3968 181 KAGNVVHLYE--RDCS-V-----QRRHQKVVEIAPAPHLDINVRNKM-TDLAVKLAKHV-----GYSNAGTVEFLCDESG 246 (1080)
Q Consensus 181 ~~G~vv~l~~--r~~~-~-----~~~~~~~~~~~Pa~~l~~~~~~~l-~~~a~~i~~al-----g~~G~~~vEfivd~dG 246 (1080)
+ +.+.... +... . ..+........|++.+++++.+++ .+++.++++++ +|.|++++||+++++|
T Consensus 222 G--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~~g 299 (451)
T 2yrx_A 222 G--EKVYPLAIAQDHKRAYDGDEGPNTGGMGAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATANG 299 (451)
T ss_dssp T--TEEEECCCBEECCEEETTTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred C--CEEEEeeeEEeccccccCCCCCCCCCCeEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeCCC
Confidence 4 4333221 1100 0 001112235678866899888888 66777777765 6789999999999988
Q ss_pred CEEEEEEeccCCCCc-cchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeee----ccCCCCCCCCCCCCc
Q psy3968 247 QFYFIEVNARLQVEH-TVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRV----TTEDPAKNFQPDTGR 321 (1080)
Q Consensus 247 ~~~~iEvNpR~~g~~-~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri----~ae~p~~~f~p~~G~ 321 (1080)
+||+|+|||+++.. ..+...+|+|+.+.+++++.|.. +++.+. .+.++...+ |++++..++. ..|.
T Consensus 300 -~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~~-~~~~~~------~~~~~~~~l~~~g~p~~~~~g~~-i~~~ 370 (451)
T 2yrx_A 300 -PKVIEFNARFGDPEAQVVLPRLKTDLVEAVLAVMDGKE-LELEWT------DEAVLGVVLAAKGYPGAYERGAE-IRGL 370 (451)
T ss_dssp -EEEEEEESSCCTTHHHHHGGGBCSCHHHHHHHHHTTCC-CCCCBC------SSEEEEEEEEETTTTSSCCCCCE-EBCG
T ss_pred -cEEEEEecCCCCcHHHHHHHHcCCCHHHHHHHHhcCCC-CCcccc------CCceEEEEEecCCcCCCCCCCCc-CcCc
Confidence 99999999999864 34556799999999999999974 333211 123444444 4444443331 1111
Q ss_pred eEEEEcCCcceEEEc-CCc-cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 322 IEVFRSGEGMGIRLD-GAS-AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 322 i~~~~~~~~~gvr~d-~~~-~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
..+. +++++. .+. ...|..++++ .++|+|++.|+|.++|+++++++++.++++|. ++||..
T Consensus 371 -~~~~----~~~~v~~~G~~~~~~~~~~~~--~rvg~v~~~g~~~~ea~~~~~~~~~~i~~~~~~~r~dig~ 435 (451)
T 2yrx_A 371 -DRIS----PDALLFHAGTKREGGAWYTNG--GRVLLLAAKGETLAKAKEKAYEQLAAIDCDGLFYRRDIGR 435 (451)
T ss_dssp -GGSC----TTSEEEESSEEEETTEEEECS--SEEEEEEEEESSHHHHHHHHHHHHTTCBCTTEECCSCTTT
T ss_pred -cccC----CCCEEEeCcccccCCeEEcCC--CeEEEEEEEeCCHHHHHHHHHHHhhccccCCeEechhhhh
Confidence 1001 222221 110 0112334444 69999999999999999999999999999997 899884
No 35
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=100.00 E-value=6.1e-34 Score=335.06 Aligned_cols=343 Identities=18% Similarity=0.221 Sum_probs=255.6
Q ss_pred CCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 23 ~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
++.|.+.++++|+++++|+|+++.+... ...+++.+++.|++++||+++++++++||..++++++++|||+|++ ..+
T Consensus 47 ~~~d~~~l~~~~~~~~~d~v~~~~E~~~-~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~--~~~ 123 (422)
T 2xcl_A 47 EESDHAGLVSFAKQNQVGLTIVGPEVPL-IEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEY--ETF 123 (422)
T ss_dssp CTTCHHHHHHHHHHTTEEEEEECSHHHH-HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCE--EEE
T ss_pred CcCCHHHHHHHHHHcCCCEEEECCcHHH-HHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCe--EEE
Confidence 6889999999999999999999754211 1246677888999999999999999999999999999999999998 568
Q ss_pred CCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcC--CCcEEEeeccCCCcEEEEEEEEe
Q psy3968 103 TTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFG--NGAMFIEKFIERPRHIEVQLLGD 180 (1080)
Q Consensus 103 ~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g--~~~vlVEeyI~G~~ei~v~vl~d 180 (1080)
++.+++.+++++++||+|+||..|+||+|++++++.+|+.++++.+... ..|+ +..+++|+||+| +|+++.++.+
T Consensus 124 ~~~~~~~~~~~~~~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~g-~E~sv~~~~d 200 (422)
T 2xcl_A 124 TSFDEAKAYVQEKGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLED--EKFGDASASVVIEEYLSG-EEFSLMAFVK 200 (422)
T ss_dssp SCHHHHHHHHHHHCSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEE
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCcC-cEEEEEEEEc
Confidence 8999999999999999999999999999999999999999999877541 1133 368999999998 8999999986
Q ss_pred cCCcEEEEE-e-eecc-c-c----ccccEEEEEcCCCCCCHHHHHHHHH-HHHHHHHHc-----CCcceEEEEEEEcCCC
Q psy3968 181 KAGNVVHLY-E-RDCS-V-Q----RRHQKVVEIAPAPHLDINVRNKMTD-LAVKLAKHV-----GYSNAGTVEFLCDESG 246 (1080)
Q Consensus 181 ~~G~vv~l~-~-r~~~-~-~----~~~~~~~~~~Pa~~l~~~~~~~l~~-~a~~i~~al-----g~~G~~~vEfivd~dG 246 (1080)
+ +.+... . +... . . .+........|++.++++..+++.+ ++.++++++ +|.|++++||+++++|
T Consensus 201 G--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~~g 278 (422)
T 2xcl_A 201 G--EKVYPMVIAQDHKRAFDGDKGPNTGGMGAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTENG 278 (422)
T ss_dssp T--TEEEECCCBEEEEEEEGGGEEEEEEEEEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEETTE
T ss_pred C--CEEEecceeeeeehhcCCCCCCCCCCCeeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeCCC
Confidence 4 333321 1 1100 0 0 1112233567886689988888854 777777765 6789999999999988
Q ss_pred CEEEEEEeccCCCCc-cchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeee----ccCCCCCCCCCCCCc
Q psy3968 247 QFYFIEVNARLQVEH-TVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRV----TTEDPAKNFQPDTGR 321 (1080)
Q Consensus 247 ~~~~iEvNpR~~g~~-~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri----~ae~p~~~f~p~~G~ 321 (1080)
+||+|+|||+++.. ..+...+|+|+.+.+++++.|. ++++.+. .+.++.+.+ |++++..++ +..|
T Consensus 279 -~~viEiN~R~g~~~~~~i~~~~g~d~~~~~~~~~~g~-l~~~~~~------~~~~~~~~~~~~g~~~~~~~g~-~i~~- 348 (422)
T 2xcl_A 279 -SKVIEFNARFGDPETQVVLPRMESDLVQVLLDLLDDK-EVDLRWK------DTAAVSVVLASEGYPESYAKGT-PIGS- 348 (422)
T ss_dssp -EEEEEEESSCCTTTHHHHGGGBCSCHHHHHHHHHTTC-CCCCCBC------SCEEEEEEEEETTTTSCCCSCC-BCCC-
T ss_pred -cEEEEEecCCCCcHHHHHHHhcCCCHHHHHHHHHcCC-cCccccc------CCceEEEEEECCCCCCCCCCCC-cccC-
Confidence 99999999999853 3456689999999999999986 4433211 123444444 343343333 2223
Q ss_pred eEEEEcCCcceEEEcC-C-ccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccc--ccCHHH
Q psy3968 322 IEVFRSGEGMGIRLDG-A-SAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGV--KTNIPF 389 (1080)
Q Consensus 322 i~~~~~~~~~gvr~d~-~-~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv--~tni~~ 389 (1080)
+... . +++++.. + ....|...+.+ +|+++|++.|+|+++|+++++++++.++++|. ++||..
T Consensus 349 ~~~~---~-~~~~~~~~g~~~~~~~~~~~~--~r~~~v~~~g~~~~~a~~~~~~~~~~i~~~g~~~r~di~~ 414 (422)
T 2xcl_A 349 LAAE---T-EQVVVFHAGTKAEGGEFVTNG--GRVANVTAFDETFEAARDRVYKAVDEIFKPGLFFRKDIGA 414 (422)
T ss_dssp CCCC---S-SSEEEEESSEEECSSSEEECS--SEEEEEEEEESSHHHHHHHHHHHHHHHCCTTEECCSCTTH
T ss_pred cccC---C-CCcEEEEeeeEeeCCEEEeCC--CceEEEEEEeCCHHHHHHHHHHHHhcceeCCcEecchhhH
Confidence 1111 1 3444311 1 01123333322 58999999999999999999999999999997 899985
No 36
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=100.00 E-value=1.6e-32 Score=319.71 Aligned_cols=326 Identities=17% Similarity=0.218 Sum_probs=254.8
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++..+||+.+.. +|.|.+.+.+++++ +|+|.++++. ....+++.+++.|+ +||+++++..+.||.
T Consensus 49 ~~~~~~ad~~~~~--------~~~d~~~l~~~~~~--~dvI~~~~e~--~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~ 114 (389)
T 3q2o_A 49 SPCAQVADIEIVA--------SYDDLKAIQHLAEI--SDVVTYEFEN--IDYRCLQWLEKHAY--LPQGSQLLSKTQNRF 114 (389)
T ss_dssp CTTTTTCSEEEEC--------CTTCHHHHHHHHHT--CSEEEESCCC--CCHHHHHHHHHHSC--CTTCSHHHHHTTSHH
T ss_pred CchHHhCCceEec--------CcCCHHHHHHHHHh--CCEeeecccc--ccHHHHHHHHhhCc--cCCCHHHHHHhcCHH
Confidence 5677888988874 79999999999975 7888766554 44778888888886 789999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCC-CcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGG-GRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~G-g~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.++++|+++|||+|++ ..+++.+++.+++++++||+|+||..|++ |+|++++++.+|+.++++.+. +++
T Consensus 115 ~~k~~l~~~Gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~--------~~~ 184 (389)
T 3q2o_A 115 TEKNAIEKAGLPVATY--RLVQNQEQLTEAIAELSYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLAN--------AAE 184 (389)
T ss_dssp HHHHHHHHTTCCCCCE--EEESSHHHHHHHHHHHCSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHH--------HSC
T ss_pred HHHHHHHHCCCCCCCe--EEECCHHHHHHHHHhcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC--------CCC
Confidence 9999999999999998 56899999999999999999999999975 799999999999999887653 358
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|.+|+++.++.+.+|++..+...+ .....+.......|+ .++++..+++.+.+.++++++|++|.+++||
T Consensus 185 ~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~e-~~~~~g~~~~~~~p~-~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~ 262 (389)
T 3q2o_A 185 CILEKWVPFEKEVSVIVIRSVSGETKVFPVAE-NIHVNNILHESIVPA-RITEELSQKAIAYAKVLADELELVGTLAVEM 262 (389)
T ss_dssp EEEEECCCCSEEEEEEEEECTTCCEEECCCEE-EEEETTEEEEEEESC-SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEecccCceEEEEEEEEcCCCCEEEecCee-eEEcCCceEEEECCC-CCCHHHHHHHHHHHHHHHHHcCCeeEEEEEE
Confidence 99999999889999999999888876643222 223334444556787 5999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G 320 (1080)
+++++|++||+|+|||++++.+++..++|+|+++.++++++|.++++..+... ++...+..... .+
T Consensus 263 ~~~~dg~~~viEiNpR~~~s~~~~~~~~g~~~~~~~~r~~lg~~l~~~~~~~~-------~~~~~~~g~~~-------~~ 328 (389)
T 3q2o_A 263 FATADGEIYINELAPRPHNSGHYTQDACETSQFGQHIRAICNLPLGETNLLKP-------VVMVNILGEHI-------EG 328 (389)
T ss_dssp EECTTSCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHHTCCCCCCCBCSC-------EEEEEEEHHHH-------HH
T ss_pred EEeCCCCEEEEEeeCCCCCchhHHHHHcCCCHHHHHHHHHcCCCCCCccccCc-------EEEEEEecCch-------hh
Confidence 99988899999999999998888888999999999999999999986543211 22222221100 00
Q ss_pred ceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHH
Q psy3968 321 RIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRA 374 (1080)
Q Consensus 321 ~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ra 374 (1080)
. .+.....+++.+.. |......+. ..+|+|++.|+|.++|.+++..+
T Consensus 329 ~--~~~~~~~p~~~~~l---ygk~~~~~~--r~~G~v~~~~~~~~~a~~~a~~~ 375 (389)
T 3q2o_A 329 V--LRQVNRLTGCYLHL---YGKEEAKAQ--RKMGHVNILNDNIEVALEKAKSL 375 (389)
T ss_dssp H--HHTGGGCTTEEEEE---CCCSSCCTT--SEEEEEEEECSSHHHHHHHHHHT
T ss_pred H--HHHHHhCCCCEEEE---CCCCCCCCC--CeeEEEEEEcCCHHHHHHHHHHh
Confidence 0 00000112222211 111112222 46999999999999999998765
No 37
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=100.00 E-value=7.1e-33 Score=317.19 Aligned_cols=296 Identities=13% Similarity=0.121 Sum_probs=237.8
Q ss_pred CCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy3968 38 DVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGL 117 (1080)
Q Consensus 38 ~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igf 117 (1080)
++|+|+|.+++.+. .+++.+++.| +++|+++++.+++||..+|++++++|||+|++ ..+++.+++.++++++||
T Consensus 42 ~~d~it~e~e~v~~--~~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~--~~v~~~~e~~~~~~~~G~ 115 (355)
T 3eth_A 42 QQSVITAEIERWPE--TALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPW--QLLAERSEWPAVFDRLGE 115 (355)
T ss_dssp TTSEEEESCSCCCC--CHHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCE--EEECCGGGHHHHHHHHCS
T ss_pred cCCEEEECcCCcCH--HHHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCE--EEECCHHHHHHHHHHcCC
Confidence 89999999998873 4577888887 67899999999999999999999999999998 568899999999999999
Q ss_pred cEEEEeCCC-CCCcCeEEECC--HhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeecc
Q psy3968 118 PVIFKAAYG-GGGRGMRVVRK--MEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCS 194 (1080)
Q Consensus 118 PvVVKP~~g-~Gg~GV~iv~s--~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~ 194 (1080)
|+||||+.+ ++|+|+++|++ .+|+.+++ ++ .+++|+||++.+|+++.++++.+|++..+ .....
T Consensus 116 P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~----------~~--~vivEe~I~~~~Eisv~v~~~~~G~~~~~-p~~e~ 182 (355)
T 3eth_A 116 LAIVKRRTGGYDGRGQWRLRANETEQLPAEC----------YG--ECIVEQGINFSGEVSLVGARGFDGSTVFY-PLTHN 182 (355)
T ss_dssp EEEEEESSSCCTTTTEEEEETTCGGGSCGGG----------TT--TEEEEECCCCSEEEEEEEEECTTSCEEEC-CCEEE
T ss_pred CEEEEecCCCCCCCeEEEEcCCCHHHHHHHh----------hC--CEEEEEccCCCcEEEEEEEEcCCCCEEEE-CCEEE
Confidence 999999985 78899999999 99988742 23 69999999966999999999988887653 22223
Q ss_pred ccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHH
Q psy3968 195 VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQ 274 (1080)
Q Consensus 195 ~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~ 274 (1080)
.++++.......|+ .++++..+++.+++.+++++|||+|.+++||++++ +++||+|||||++++++++..++++|+++
T Consensus 183 ~~~~g~~~~~~~pa-~l~~~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~-~~~~v~EinpR~~~sg~~t~~~~~~s~fe 260 (355)
T 3eth_A 183 LHQDGILRTSVAFP-QANAQQQARAEEMLSAIMQELGYVGVMAMECFVTP-QGLLINELAPRVHNSGHWTQNGASISQFE 260 (355)
T ss_dssp EEETTEEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TEEEEEEEESSCCGGGTTHHHHSSSCHHH
T ss_pred EeeCCeEEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC-CcEEEEEeeCCCCCCccEEeeeecCCHHH
Confidence 44444444445565 69999999999999999999999999999999986 46999999999999988998999999999
Q ss_pred HHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCceeccccCCee
Q psy3968 275 SQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLL 354 (1080)
Q Consensus 275 ~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l 354 (1080)
.++++++|.|+++..+. ..++...+..++.... +-..+++++. .|.+ ...++ .++
T Consensus 261 ~~~ra~~G~pl~~~~~~-------~~~~m~nilg~~~~~~------------~~~~p~~~~~---~ygk-~~r~~--rkm 315 (355)
T 3eth_A 261 LHLRAITDLPLPQPVVN-------NPSVMINLIGSDVNYD------------WLKLPLVHLH---WYDK-EVRPG--RKV 315 (355)
T ss_dssp HHHHHHTTCCCCCCCCC-------SCEEEEEEESCCCCGG------------GGGSTTCEEE---ECCC-CCCTT--CEE
T ss_pred HHHHHHcCCCCCCcccc-------CceEEEEEecchHHHH------------HHhCCCCEEE---EcCC-CCCCC--Cee
Confidence 99999999999754322 2245555554431111 1112222221 2333 44454 689
Q ss_pred EEEEEecCChHHHHHHHHHHhhccE
Q psy3968 355 VKVIAHAADLQSSCAKMNRALREFR 379 (1080)
Q Consensus 355 ~~Via~G~t~~eA~~~a~ral~~i~ 379 (1080)
|||++.|+|.++++++++++.+.+.
T Consensus 316 Ghv~~~~~~~~~~~~~~~~~~~~~~ 340 (355)
T 3eth_A 316 GHLNLTDSDTSRLTATLEALIPLLP 340 (355)
T ss_dssp EEEEEECSCHHHHHHHHHHHGGGSC
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 38
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=100.00 E-value=5.4e-33 Score=320.66 Aligned_cols=311 Identities=15% Similarity=0.182 Sum_probs=197.4
Q ss_pred HHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q psy3968 29 EIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEA 108 (1080)
Q Consensus 29 ~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~ 108 (1080)
.+.+++ +++|+|+++++... ..+++.++. ++||+++++.+++||..++++++++|||+|++ ..++ .+++
T Consensus 50 ~l~~~~--~~~d~v~~~~e~~~--~~~~~~l~~----~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~--~~~~-~~~~ 118 (365)
T 2z04_A 50 QISEFV--DSCDIITYEFEHIK--DEVLEKCES----KLIPNPQALYVKKSRIREKLFLKKHGFPVPEF--LVIK-RDEI 118 (365)
T ss_dssp GHHHHH--HHCSEEEESSSCCC--HHHHHHHTT----TBSSCTHHHHHHTCHHHHHHHHHTTTCCCCCE--EEC------
T ss_pred HHHHHh--hcCCEEEECCCCCc--HHHHHHHhh----hcCCCHHHHHHhhCHHHHHHHHHHcCCCCCCE--EEEc-HHHH
Confidence 577777 57999999986443 234555532 77999999999999999999999999999998 4566 8888
Q ss_pred HHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccC-CCcEEEEEEEEecCCcEE
Q psy3968 109 MEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE-RPRHIEVQLLGDKAGNVV 186 (1080)
Q Consensus 109 ~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~-G~~ei~v~vl~d~~G~vv 186 (1080)
.+++++++||+|+||..|+ ||+|++++++.+|+.++++.+. ++..+++|+||+ | +|+++.++.+++|+++
T Consensus 119 ~~~~~~~~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~-------~~~~~lvEe~i~~g-~e~sv~~~~d~~G~~~ 190 (365)
T 2z04_A 119 IDALKSFKLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNHD-------KEESFIIEEFVKFE-AEISCIGVRDREGKTY 190 (365)
T ss_dssp ---------CEEEECC-------------------------------------CEEEECCCCS-EEEEEEEEECTTCCEE
T ss_pred HHHHHhcCCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHhc-------cCCCEEEEccCCCC-EEEEEEEEECCCCCEE
Confidence 8888899999999999999 9999999999999999887654 246899999999 6 9999999998888876
Q ss_pred EEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhc
Q psy3968 187 HLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEE 266 (1080)
Q Consensus 187 ~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~ 266 (1080)
.+...+. ..+.+.......|++ + .+++.+.+.++++++|++|.+++||+++++|++||+|+|||+++....+..
T Consensus 191 ~~~~~~~-~~~~~~~~~~~~p~~-~----~~~~~~~~~~~~~~lg~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~~~~~ 264 (365)
T 2z04_A 191 FYPQPFN-KHEEGILIYNYVPYA-K----LKEAEEITKRLMELLDIVGVFTVEFFLLKDGRVLINEFAPRVHNTGHWTLD 264 (365)
T ss_dssp ECCEEEE-EEETTEEEEEEEEEE-C----CHHHHHHHHHHHHHTTCCEEEEEEEEECTTSCEEEEEEESSCCGGGTTHHH
T ss_pred EECCEEE-EEeCCEeEEEECCHh-H----HHHHHHHHHHHHHHcCCEEEEEEEEEEeCCCcEEEEEeccCcCCCceEEee
Confidence 6433222 223333344566764 3 467899999999999999999999999988899999999999985444667
Q ss_pred ccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCCcee
Q psy3968 267 ITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAII 346 (1080)
Q Consensus 267 ~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G~~i 346 (1080)
++|+|+++.+++.++|.+++.... . .+ ++.+++++.++ + | +.+..+ ...+++++.. + |...
T Consensus 265 ~~~~~~~~~~~~~~~g~~l~~~~~-----~-~~-~~~~~~~~~~~---~-~--~~~~~~--~~~~~~~~~~---~-g~~~ 325 (365)
T 2z04_A 265 GAYTSQFENLLRAITEMPLGSTEL-----K-LP-SGMVNILGKSY---E-E--IPLKEI--LSVEGAKLYW---Y-GKEK 325 (365)
T ss_dssp HBSSCHHHHHHHHHTTCCCCCCCB-----S-SC-EEEEEEESCCG---G-G--SCHHHH--TTSTTEEEEE---C-CCCC
T ss_pred ccccCHHHHHHHHHhCCCCCCccc-----c-CC-EEEEEEECCcc---c-c--chHHHH--hcCCCCEEEe---c-CCCC
Confidence 899999999999999998874321 1 22 55677776542 1 1 222211 1223443321 2 4433
Q ss_pred ccccCCeeEEEEEecCChHHHHHHHHHHhhccEEccccc
Q psy3968 347 SPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKT 385 (1080)
Q Consensus 347 ~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~t 385 (1080)
++ +.++|+|+++|+|+++|+++++++++.++++|++-
T Consensus 326 ~~--~~~lg~v~~~g~~~~~a~~~~~~~~~~i~~~~~~~ 362 (365)
T 2z04_A 326 KP--RRKVGHVNVVGRSKEEVVEKVERVFTLLKGSREKL 362 (365)
T ss_dssp CT--TCEEEEEEEECSSHHHHHHHHHHHHHC--------
T ss_pred CC--CCeEEEEEEecCCHHHHHHHHHHHHHHhhhccCCC
Confidence 33 47999999999999999999999999999999853
No 39
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=100.00 E-value=3.5e-32 Score=315.39 Aligned_cols=325 Identities=16% Similarity=0.249 Sum_probs=250.0
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
+++.++||+++.. +|.|.+.+.+++++ +|+|.++++... ...+..+++.+ .++|++++++++.||.
T Consensus 47 ~p~~~~ad~~~~~--------~~~d~~~l~~~~~~--~dvi~~~~E~~~--~~~l~~l~~~~--~v~p~~~~~~~~~dK~ 112 (377)
T 3orq_A 47 CPCRYVAHEFIQA--------KYDDEKALNQLGQK--CDVITYEFENIS--AQQLKLLCEKY--NIPQGYQAIQLLQDRL 112 (377)
T ss_dssp CTTGGGSSEEEEC--------CTTCHHHHHHHHHH--CSEEEESSTTSC--HHHHHHHHHHS--CCTTTTHHHHHHHSHH
T ss_pred ChhhhhCCEEEEC--------CCCCHHHHHHHHHh--CCcceecccccC--HHHHHHHhhhc--CCCCCHHHHHHhcCHH
Confidence 6778899998875 68999999999986 788887765333 34555666654 4579999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCC-CCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCc
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGA 160 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~-Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~ 160 (1080)
.+|++++++|||+|++ ..+.+.+++.++++++|||+|+||..|+ +|+|++++++.+|+.++++.+. +.+
T Consensus 113 ~~k~~l~~~Gip~p~~--~~~~~~~~~~~~~~~~g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~--------~~~ 182 (377)
T 3orq_A 113 TEKETLKSAGTKVVPF--ISVKESTDIDKAIETLGYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIE--------TSE 182 (377)
T ss_dssp HHHHHHHHTTCCBCCE--EEECSSTHHHHHHHHTCSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHT--------TSC
T ss_pred HHHHHHHHCCCCCCCe--EEECCHHHHHHHHHHcCCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcC--------CCc
Confidence 9999999999999998 5688889999999999999999999998 8999999999999999887653 368
Q ss_pred EEEeeccCCCcEEEEEEEEecCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Q psy3968 161 MFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240 (1080)
Q Consensus 161 vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEf 240 (1080)
+++|+||+|.+|+++.++.+.+|++..+...+ ...+.........|+ .+++ .+++.+.+.+++++||++|.+++||
T Consensus 183 ~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~e-~~~~~g~~~~~~~Pa-~l~~--~~~~~~~a~~i~~~lg~~G~~~ve~ 258 (377)
T 3orq_A 183 CVAEKYLNIKKEVSLTVTRGNNNQITFFPLQE-NEHRNQILFKTIVPA-RIDK--TAEAKEQVNKIIQSIHFIGTFTVEF 258 (377)
T ss_dssp EEEEECCCEEEEEEEEEEECGGGCEEECCCEE-EEEETTEEEEEEESC-SSCC--HHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred EEEEccCCCCEEEEEEEEEeCCCCEEEECCEe-EEEECCEEEEEECCC-CCCH--HHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 99999999988999999987777766542222 223334445557787 4666 7899999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCCC-CCCCccccccCeEEEEeeeccCCCCCCCCCCC
Q psy3968 241 LCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPE-LGLTQEKISPQGFAIQCRVTTEDPAKNFQPDT 319 (1080)
Q Consensus 241 ivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~~-l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~ 319 (1080)
+++++|++||+|||||++++..++..++++++++.+++.++|.|+++ ..+.. .++...+...+. .
T Consensus 259 ~~~~~g~~~v~EinpR~~~sg~~t~~~~~~s~f~~~~ra~~G~pl~~~~~~~~-------~~~m~n~lg~~~-------~ 324 (377)
T 3orq_A 259 FIDSNNQLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGQSLPNSIELLK-------PAVMMNLLGKDL-------D 324 (377)
T ss_dssp EEETTCCEEEEEEESSCCGGGTTHHHHBSSCHHHHHHHHHTTCCCCSCCCBSS-------CEEEEEEEHHHH-------H
T ss_pred EEeCCCcEEEEEeeCCcCCCCcEeehhcCCCHHHHHHHHHcCCCCCccccccc-------cEEEEEEeCccc-------h
Confidence 99988899999999999998777777899999999999999999875 33221 234444432210 0
Q ss_pred CceEEEEcCCcceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHh
Q psy3968 320 GRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRAL 375 (1080)
Q Consensus 320 G~i~~~~~~~~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral 375 (1080)
+.-..+..-.+..+++ |......++ .++|||.+.|+|.+++++++..-.
T Consensus 325 ~~~~~~~~~~~~~~~~-----ygk~~~~~~--rkmGhv~~~~~~~~~~~~~~~~~~ 373 (377)
T 3orq_A 325 LLENEFNEHPEWHLHI-----YGKSERKDS--RKMGHMTVLTNDVNQTEQDMYAKF 373 (377)
T ss_dssp HHGGGGGGCGGGCEEE-----CCCSSCCTT--SEEEEEEEECSCHHHHHHHHHHHT
T ss_pred hHHHHHhhCCCCEEEE-----CCCCCCCCC--CeeEEEEEEcCCHHHHHHHhHHhh
Confidence 0000111001112333 222233344 689999999999999999887543
No 40
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.98 E-value=1.2e-31 Score=347.52 Aligned_cols=315 Identities=22% Similarity=0.309 Sum_probs=242.8
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCC
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITT 104 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s 104 (1080)
++.+.+.++++.+++|+|++.++... ...++..|++.|++++|++++++.++.||..++++|+++|||+|++ ..+.+
T Consensus 621 ~~~e~v~~i~~~e~~d~Vi~~~g~~~-~~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~--~~~~s 697 (1073)
T 1a9x_A 621 VTLEDVLEIVRIEKPKGVIVQYGGQT-PLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPAN--ATVTA 697 (1073)
T ss_dssp CSHHHHHHHHHHHCCSEEECSSSTHH-HHTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCE--EECCS
T ss_pred chhhhhhhhhhhcCcceEEeecCCch-HHHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCc--eEECC
Confidence 56899999999999999999887432 1356788899999999999999999999999999999999999998 57899
Q ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCc
Q psy3968 105 TEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGN 184 (1080)
Q Consensus 105 ~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~ 184 (1080)
.+++.++++++|||+||||..++||+||++|++.+|+.++++.+... .++.+++||+||+|.+|++++++.|+++.
T Consensus 698 ~eea~~~~~~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~----~~~~~vlvEefI~g~~E~~V~~l~d~~~v 773 (1073)
T 1a9x_A 698 IEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSV----SNDAPVLLDHFLDDAVEVDVDAICDGEMV 773 (1073)
T ss_dssp HHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------EEEBCCTTCEEEEEEEEECSSCE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhh----CCCCcEEEEEccCCCcEEEEEEEEECCeE
Confidence 99999999999999999999999999999999999999998876432 23568999999999669999999986543
Q ss_pred EEE-EEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccc
Q psy3968 185 VVH-LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTV 263 (1080)
Q Consensus 185 vv~-l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~ 263 (1080)
++. +.+.-.....+........|++.++++..+++.+.+.++++++|++|.+++||+++ +|++||||||||+++++++
T Consensus 774 ~~~~i~e~~~~~g~~~gd~~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~-~~~~~viEvNpR~~~~~~~ 852 (1073)
T 1a9x_A 774 LIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVK-NNEVYLIEVNPRAARTVPF 852 (1073)
T ss_dssp EEEEEEEESSCTTSCGGGCCEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC-SSCEEEEEEECSCCTTHHH
T ss_pred EEEeeEEEEeccCCccCCceEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEE-CCeEEEEEEECCCccHHHH
Confidence 322 21211111111233445668767999999999999999999999999999999997 6779999999999999999
Q ss_pred hhcccCCCHHHHHHHHHcCCCCCCCCCCccccccCeEEEEeeeccCCCCCCCCCCCCceEEEEcCCcceEEEcCCccCCC
Q psy3968 264 TEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAG 343 (1080)
Q Consensus 264 ~e~~tGvdl~~~~l~~alG~~l~~l~~~~~~i~~~g~ai~~ri~ae~p~~~f~p~~G~i~~~~~~~~~gvr~d~~~~~~G 343 (1080)
++.++|+|++++++++++|.+++++++.+... +.++++++++++.....+..|..|.
T Consensus 853 ~~~~tGi~l~~~~~~~~~G~~l~~~~~~~~~~-~~~~~vk~~~~~f~~~~~~d~~lg~---------------------- 909 (1073)
T 1a9x_A 853 VSKATGVPLAKVAARVMAGKSLAEQGVTKEVI-PPYYSVKEVVLPFNKFPGVDPLLGP---------------------- 909 (1073)
T ss_dssp HHHHHSCCHHHHHHHHHTTCCHHHHTCCSCCC-CSSEEEEEEECGGGGCTTSCCCCCS----------------------
T ss_pred HHHHHCcCHHHHHHHHHcCCCchhcccCcCcC-CCeEEEEeccCCcccCCCCcCCCCC----------------------
Confidence 89999999999999999999987665544333 3688999998865443333332220
Q ss_pred ceeccccCCeeEEEEEecCChHHHHHHHHHHhh
Q psy3968 344 AIISPYYDSLLVKVIAHAADLQSSCAKMNRALR 376 (1080)
Q Consensus 344 ~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~ 376 (1080)
. -...|.+++.|.|.++|..++..+..
T Consensus 910 -----~-~~stGev~g~~~~~~~a~~ka~~~~~ 936 (1073)
T 1a9x_A 910 -----E-MRSTGEVMGVGRTFAEAFAKAQLGSN 936 (1073)
T ss_dssp -----S-CCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred -----c-ccccCceEEecCCHHHHHHhhHHhcc
Confidence 0 02356788888888888888877764
No 41
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=99.97 E-value=6.8e-33 Score=316.33 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=162.8
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCC-CCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHH
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHP-DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMG 539 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p-~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e 539 (1080)
+| +.|+|+||+|.++|.+++++|+++++.+| ++||++|||||+|||+||+++|+++||++||+|++|||+|+||++||
T Consensus 161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG~~aGN~~le 240 (345)
T 1nvm_A 161 YGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLE 240 (345)
T ss_dssp HTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHH
T ss_pred CCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhccCCccCcCHH
Confidence 56 69999999999999999999999999996 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHH-HhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHHH
Q psy3968 540 AVVASLQGSDIDTGLDLKDISAYSAYWEQT-RQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDV 618 (1080)
Q Consensus 540 ~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev 618 (1080)
+++++|+.+|++|++|+++|.++++++++. ++.. .+.+..++.|++ ||++||+..|++++|+.++|+.
T Consensus 241 ~lv~~L~~~g~~~~idl~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~G~~~~~~~~~~~~~~~~~~~~- 309 (345)
T 1nvm_A 241 VFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRP---------VRVDRETLGLGY-AGVYSSFLRHAEIAAAKYNLKT- 309 (345)
T ss_dssp HHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSC---------CSCCHHHHHHHH-HTCCTTHHHHHHHHHHHHTCCH-
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCC---------CCCChHHHheec-cccchhHHHHHHHHHHhcCCCH-
Confidence 999999999999999999999999999774 3321 245789999999 9999999999999999999765
Q ss_pred HHHHHHHHHhCCCccccCCCchhhHHhhHHHHhhc
Q psy3968 619 KKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNK 653 (1080)
Q Consensus 619 ~~~~~~vr~~lG~~~~VTP~Sqivg~qA~~~v~n~ 653 (1080)
.+|..++|...+|||+|++||+.|++++.|.
T Consensus 310 ----~~i~~~~~~~~~v~~~~~~i~d~a~~~~~~~ 340 (345)
T 1nvm_A 310 ----LDILVELGHRRMVGGQEDMIVDVALDLLAAH 340 (345)
T ss_dssp ----HHHHHHHHHHTCCTTCTHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCCceECCcHHHHHHHHHHHHhcc
Confidence 4677777888889999999999999999875
No 42
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.96 E-value=3.7e-29 Score=284.34 Aligned_cols=257 Identities=17% Similarity=0.199 Sum_probs=185.4
Q ss_pred CcchhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCccc-ccHHHHHHHHHcCCcEeCCcHHHHHHhcCH
Q psy3968 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLS-ERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80 (1080)
Q Consensus 2 s~~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~ls-E~~~~a~~l~~~gi~~iGps~eai~~~~DK 80 (1080)
+++.+.||+++.++. .++..+.+.++++++++++|+|+|+++... ..+..++.++..|++++||+++++.+++||
T Consensus 40 ~~~~~~~d~~~~~~~----~~~~~~~~~l~~~~~~~~~d~vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK 115 (331)
T 2pn1_A 40 ASALYMADQHYIVPK----IDEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDK 115 (331)
T ss_dssp CGGGGGSSSEEECCC----TTSTTHHHHHHHHHHHHTCCEEEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBH
T ss_pred chhHHhhhceecCCC----CCChhHHHHHHHHHHHcCCCEEEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCH
Confidence 456778999988731 222334789999999999999999876322 113345567777999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH--HHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC
Q psy3968 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFC--LKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN 158 (1080)
Q Consensus 81 ~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~--~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~ 158 (1080)
..++++++++|||+|++. .+.+++.+++ ++++||+|+||..|+||+|++++++.+|+.++++. .
T Consensus 116 ~~~~~~l~~~gip~p~~~----~~~~~~~~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~----------~ 181 (331)
T 2pn1_A 116 YTMYEYCLRQGIAHARTY----ATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK----------N 181 (331)
T ss_dssp HHHHHHHHHHTCCCCCEE----SSHHHHHHHHHTTSSCSCEEEEESBC--------------------------------
T ss_pred HHHHHHHHHcCCCCCcEE----ecHHHhhhhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh----------C
Confidence 999999999999999973 2567777666 47899999999999999999999999999887653 2
Q ss_pred CcEEEeeccCCCcEEEEEEEEe-cCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEE
Q psy3968 159 GAMFIEKFIERPRHIEVQLLGD-KAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT 237 (1080)
Q Consensus 159 ~~vlVEeyI~G~~ei~v~vl~d-~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~ 237 (1080)
.++++|+||+| +|+++.++.+ .+|+++.++.+.....+.+. .. ..+.+ . .+++.+.+.++++++|++|.++
T Consensus 182 ~~~lvee~i~G-~e~~v~~~~d~~~G~~~~~~~~~~~~~~~g~-~~-~~~~~-~----~~~~~~~~~~~~~~lg~~G~~~ 253 (331)
T 2pn1_A 182 TDLIVQELLVG-QELGVDAYVDLISGKVTSIFIKEKLTMRAGE-TD-KSRSV-L----RDDVFELVEHVLDGSGLVGPLD 253 (331)
T ss_dssp -CEEEEECCCS-EEEEEEEEECTTTCCEEEEEEEEEEEEETTE-EE-EEEEE-C----CHHHHHHHHHHHTTTCCCEEEE
T ss_pred CCeEEEecCCC-cEEEEEEEEecCCCeEEEEEEEEEEEecCCc-ee-EeEEe-c----cHHHHHHHHHHHHHhCCcceEE
Confidence 47999999999 9999999998 77888766554433222221 11 11111 2 2578889999999999999999
Q ss_pred EEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCCC
Q psy3968 238 VEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLP 286 (1080)
Q Consensus 238 vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l~ 286 (1080)
+||+.+ +|++||+|+|||++|...+ ..++|+|++++++++++|.+++
T Consensus 254 vd~~~~-~g~~~~iEiN~R~~g~~~~-~~~~G~~~~~~~~~~~~g~~~~ 300 (331)
T 2pn1_A 254 FDLFDV-AGTLYLSEINPRFGGGYPH-AYECGVNFPAQLYRNLMHEINV 300 (331)
T ss_dssp EEEEEE-TTEEEEEEEESSCCTTHHH-HHHTTCCHHHHHHHHHTTCCCC
T ss_pred EEEEEc-CCCEEEEEEeCCCCCchHH-HHHcCCCHHHHHHHHHcCCCCC
Confidence 999964 6779999999999997764 6789999999999999999875
No 43
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=99.96 E-value=1.2e-30 Score=298.38 Aligned_cols=219 Identities=18% Similarity=0.212 Sum_probs=142.6
Q ss_pred ceeeeeecCCccccccCCcchHHHHHHHh---hheeeecC----CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccC
Q psy3968 403 AVDTYFIDENPQLFTLQPTKNRAQKLLNY---LGTVLVNG----PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAG 473 (1080)
Q Consensus 403 ~~~T~fie~~~elf~~~~~~dra~~L~~y---la~V~Vng----~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G 473 (1080)
.+++ |+..++.+.+.....++.+.+..+ +..+.-.| |+||+.++.+++++..++..+. +| ++|+||||+|
T Consensus 103 ~v~i-f~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~G 181 (370)
T 3rmj_A 103 RIHT-FIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVG 181 (370)
T ss_dssp EEEE-EEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred EEEE-EecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEEEecCccC
Confidence 5565 666665555444333444433222 11111112 5899999999998888877655 89 8999999999
Q ss_pred ccChHHHHHHHHHHHHHCCC---CceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc---
Q psy3968 474 LLKPRAAKLLIGAIREKHPD---IPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG--- 547 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~---~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~--- 547 (1080)
+++|.+++++|+++++++|+ ++|++|||||+|||+||+++|+++||++||+|++|||||+||++||+++++|+.
T Consensus 182 ~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv~~L~~~~~ 261 (370)
T 3rmj_A 182 YSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGLGERAGNASVEEIVMALKVRHD 261 (370)
T ss_dssp CCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHTHH
T ss_pred CcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccccCcccccccHHHHHHHHHhhhh
Confidence 99999999999999999986 899999999999999999999999999999999999999999999999999973
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHhc-------------------------------cCCCCccCCCCc-CCcceeccCC
Q psy3968 548 -SDIDTGLDLKDISAYSAYWEQTRQL-------------------------------YAPFECTTTMKS-GNADVYLNEI 594 (1080)
Q Consensus 548 -~g~~~~~d~~~l~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~-~~~~v~~~~i 594 (1080)
+|++|++|+++|.+++++++++.+. |.++.. ..+| ...++...+.
T Consensus 262 ~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~p~vG~~aF~h~sGiH~d~i~k~~~~Ye~~~P--~~vG~~~~~i~~~~~ 339 (370)
T 3rmj_A 262 LFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFSHESGIHQDGVLKHRETYEIMSA--ESVGWATNRLSLGKL 339 (370)
T ss_dssp HHCCBCCCCGGGHHHHHHHHHHHHTCCCCSSCTTTSTTTTC--------------CCSCCCCH--HHHTCC---------
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHhcccccHHHHHhCchhccccCH--HHcCCCCceEeccCC
Confidence 6999999999999999999987433 222222 2345 3567888888
Q ss_pred CCchhhcHHHHHHHCCCCcc-HHHHHHHHHHHH
Q psy3968 595 PGGQYTNLQFQAYSLGLGEF-FEDVKKAYREAN 626 (1080)
Q Consensus 595 PGG~~snl~~ql~~~g~~~~-~~ev~~~~~~vr 626 (1080)
+| .+++..+|+++|+.-. -+++.+.+.+++
T Consensus 340 sG--~~~i~~~l~~~g~~~~~~~~~~~~~~~~k 370 (370)
T 3rmj_A 340 SG--RNAFKTKLADLGIELESEEALNAAFARFK 370 (370)
T ss_dssp ---------------------------------
T ss_pred CC--HHHHHHHHHHcCCCCCcHHHHHHHHHHhC
Confidence 99 8999999999998643 556666666553
No 44
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.96 E-value=1.2e-28 Score=283.46 Aligned_cols=239 Identities=18% Similarity=0.193 Sum_probs=191.6
Q ss_pred HHHHHHHcCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCC---H
Q psy3968 30 IIRVAKENDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITT---T 105 (1080)
Q Consensus 30 Ii~~a~~~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s---~ 105 (1080)
..+..+..++|+|+|. +|++.|+..++..|+..|++|+|+++.++.++.||..+|++++++|||+|++. .+.+ .
T Consensus 89 ~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~ 166 (357)
T 4fu0_A 89 ASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSV--TFKRFNEE 166 (357)
T ss_dssp ----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEE--EEEGGGHH
T ss_pred hhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--eecCCChH
Confidence 3445566789999998 78999999999999999999999999999999999999999999999999984 3332 3
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcE
Q psy3968 106 EEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV 185 (1080)
Q Consensus 106 ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v 185 (1080)
..+.++++++|||+||||+.|+||+|+++|++.+||.+++..+.. .+..+++|+||+| +|+++.++.++.+.+
T Consensus 167 ~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~------~~~~vlvE~~i~G-~e~~v~vl~~~~~~~ 239 (357)
T 4fu0_A 167 AAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFE------HDTEVIVEETING-FEVGCAVLGIDELIV 239 (357)
T ss_dssp HHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTT------TCSEEEEEECCCS-EEEEEEEEESSSEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhc------cCCeEEEEEecCC-EEEEEEEEecCCceE
Confidence 345667788999999999999999999999999999999887653 2568999999999 999999998765443
Q ss_pred EEEEe--eeccccccc-----cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCC
Q psy3968 186 VHLYE--RDCSVQRRH-----QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQ 258 (1080)
Q Consensus 186 v~l~~--r~~~~~~~~-----~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~ 258 (1080)
..+.+ ..+...+.. .......|+ .++++..+++++.|.+++++||++|.++|||++|++|++||+|||||+|
T Consensus 240 ~~v~~~~~~~~~~d~~~k~~~~~~~~~~pa-~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~dg~~~vlEvNt~PG 318 (357)
T 4fu0_A 240 GRVDEIELSSGFFDYTEKYTLKSSKIYMPA-RIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTPSGEIVFNEVNTIPG 318 (357)
T ss_dssp CCCEEEEECHHHHTSCSBCSSCCEEEESSC-SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCC
T ss_pred EEEEEEEcccccccccccccCCCceEecCC-CCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeCCCCEEEEEEeCCCC
Confidence 32222 222222222 122345566 6999999999999999999999999999999999999999999999997
Q ss_pred CCc----cchhcccCCCHHHHHHH
Q psy3968 259 VEH----TVTEEITGVDLVQSQIR 278 (1080)
Q Consensus 259 g~~----~~~e~~tGvdl~~~~l~ 278 (1080)
-+. +..-.++|+++.++.-+
T Consensus 319 ~t~~S~~p~~~~~~G~~~~~li~~ 342 (357)
T 4fu0_A 319 FTSHSRYPNMMKGIGLSFSQMLDK 342 (357)
T ss_dssp CSTTCHHHHHHHTTTCCHHHHHHH
T ss_pred CCcccHHHHHHHHhCcCHHHHHHH
Confidence 532 22335689987765444
No 45
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.96 E-value=8.4e-31 Score=320.15 Aligned_cols=213 Identities=76% Similarity=1.285 Sum_probs=186.6
Q ss_pred CCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchhee
Q psy3968 781 PPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860 (1080)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~ 860 (1080)
++.|+||+|.++||+.+++|+|++++|.|+|||||||+||++++||++.++.++++.+++.+.++++||+||+++|+++.
T Consensus 77 ~~~g~r~~l~~~gp~~~~~~~~~~~~I~I~DTTLRDG~Qs~~~~r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~ 156 (718)
T 3bg3_A 77 PPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAM 156 (718)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHCCSCEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHH
T ss_pred CCCCHHHHHHHhCHHHHHHHHhccCCeEEeecCCChhhCCCCCcCCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhcc
Confidence 47899999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCC
Q psy3968 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGA 940 (1080)
Q Consensus 861 r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~ 940 (1080)
|++.++||+...++......++++
T Consensus 157 ~f~~e~p~e~l~~l~~~~~~~~l~-------------------------------------------------------- 180 (718)
T 3bg3_A 157 RFLYECPWRRLQELRELIPNIPFQ-------------------------------------------------------- 180 (718)
T ss_dssp HTSCCCHHHHHHHHHHHCSSSCEE--------------------------------------------------------
T ss_pred ccCCCCHHHHHHHHHHHcccchHH--------------------------------------------------------
Confidence 999999986321110000001001
Q ss_pred EEEEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHH
Q psy3968 941 ALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEA 1020 (1080)
Q Consensus 941 ~~~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~ 1020 (1080)
...+....+.+.++++.+++.+++.|.+.|+|.+|||+++||++||+.++++
T Consensus 181 ----------------------------~l~R~~n~vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ 232 (718)
T 3bg3_A 181 ----------------------------MLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEA 232 (718)
T ss_dssp ----------------------------EEECGGGTTSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSCCHHHHHHHHHH
T ss_pred ----------------------------HHhcccccccccccCCcchHHHHHHHHhcCcCEEEEEecHHHHHHHHHHHHH
Confidence 1233335566677899999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1021 AGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+++.|+++++++|||.++.||.++.||++||++++++++++|||+||||| +|+++|.
T Consensus 233 ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~ 290 (718)
T 3bg3_A 233 AGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPT 290 (718)
T ss_dssp HHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHH
T ss_pred HHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHH
Confidence 99999999999999987778888889999999999999999999999999 9999995
No 46
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.96 E-value=8e-28 Score=277.40 Aligned_cols=234 Identities=21% Similarity=0.255 Sum_probs=195.7
Q ss_pred HcCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHH----HHHH
Q psy3968 36 ENDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTE----EAME 110 (1080)
Q Consensus 36 ~~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~e----e~~~ 110 (1080)
..++|+|+|. +|...|+..++..|+..|++++|+++.++.++.||..++++++++|||+|++ ..+++.+ ++.+
T Consensus 96 ~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~--~~~~~~~~~~~~~~~ 173 (364)
T 3i12_A 96 LPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPF--ITLTRTNRHAFSFAE 173 (364)
T ss_dssp CCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCE--EEEETTTGGGCCHHH
T ss_pred cCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCE--EEEEccccchhhHHH
Confidence 4579999999 7889999999999999999999999999999999999999999999999998 4466655 7778
Q ss_pred HHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEe
Q psy3968 111 FCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYE 190 (1080)
Q Consensus 111 ~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~ 190 (1080)
++++++||+||||..|++|.|+++|++.+|+.++++.+... +..++||+||+| +|+++.++.++...+...++
T Consensus 174 ~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~e 246 (364)
T 3i12_A 174 VESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF------DHKVVVEQGIKG-REIECAVLGNDNPQASTCGE 246 (364)
T ss_dssp HHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEEESSSCEEEEEEE
T ss_pred HHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc------CCcEEEEcCcCC-eEEEEEEEeCCCceEeeeEE
Confidence 88899999999999999999999999999999999887653 568999999999 99999999886644444443
Q ss_pred ee---c--cccccc--cE-EEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCC-c
Q psy3968 191 RD---C--SVQRRH--QK-VVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVE-H 261 (1080)
Q Consensus 191 r~---~--~~~~~~--~~-~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~-~ 261 (1080)
.. . .+...+ .. .....|++ ++++..+++.+.+.++++++|++|.+++||+++++|++||+|||+|++.+ +
T Consensus 247 i~~~~~~~~~~~ky~~~~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~ 325 (364)
T 3i12_A 247 IVLNSEFYAYDTKYIDDNGAQVVVPAQ-IPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTNI 325 (364)
T ss_dssp EECCTTCC--TTTTSGGGGCEEESSCS-SCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred EecCCCccCHHHcccCCCceEEEeCCC-CCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCEEEEEeeCCCCCCCC
Confidence 21 1 111111 11 56677884 99999999999999999999999999999999999999999999998863 2
Q ss_pred ---cchhcccCCCHHHHHHHH
Q psy3968 262 ---TVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 262 ---~~~e~~tGvdl~~~~l~~ 279 (1080)
+....++|+|+.+++.++
T Consensus 326 s~~p~~~~a~G~~~~~l~~~l 346 (364)
T 3i12_A 326 SMYPKLWQASGLGYTDLISRL 346 (364)
T ss_dssp CHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHhCcCHHHHHHHH
Confidence 223456899988866554
No 47
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.96 E-value=9.7e-28 Score=278.00 Aligned_cols=238 Identities=18% Similarity=0.170 Sum_probs=195.2
Q ss_pred cCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHH----HHHH
Q psy3968 37 NDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEE----AMEF 111 (1080)
Q Consensus 37 ~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee----~~~~ 111 (1080)
.++|+|+|.. |...|+..++..++..|++++|++++++.++.||..++++|+++|||+|++. .+.+.++ +.++
T Consensus 92 ~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~ 169 (377)
T 1ehi_A 92 GDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYI--VVDPESANNWSWDKI 169 (377)
T ss_dssp CCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEE--EECTTGGGGCCHHHH
T ss_pred cCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEE--EEeccccchHHHHHH
Confidence 5799999986 6777888888999999999999999999999999999999999999999984 4555543 6667
Q ss_pred HHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEee
Q psy3968 112 CLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYER 191 (1080)
Q Consensus 112 ~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r 191 (1080)
+++++||+||||..|+||+||++|++.+||.++++.+.. .+..++||+||+|.+|+++.++.++++.++...+.
T Consensus 170 ~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei 243 (377)
T 1ehi_A 170 VAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQ------YDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAH 243 (377)
T ss_dssp HHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTT------TCSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEE
T ss_pred HHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHh------cCCcEEEEcCCCCCceEEEEEEcCCCcEEEeeEEE
Confidence 788999999999999999999999999999999887543 14689999999997899999998766556665554
Q ss_pred ecc-------cccc---c--c-EEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCC
Q psy3968 192 DCS-------VQRR---H--Q-KVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQ 258 (1080)
Q Consensus 192 ~~~-------~~~~---~--~-~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~ 258 (1080)
.+. .... + . ......|+. ++++..+++.+++.+++++||++|.+++||+++++|++||+|||||++
T Consensus 244 ~~~~~~~~~~~~d~~~k~~~g~~~~~~~Pa~-l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~vlEiN~rpg 322 (377)
T 1ehi_A 244 TVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPNTLPG 322 (377)
T ss_dssp ECTTSSSSSCCCCHHHHTTCCTTCEEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCC
T ss_pred EecCCCCcCceeCHHhcccCCCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeCCCCEEEEEEeCCCC
Confidence 331 1110 1 1 235577884 999999999999999999999999999999999888999999999999
Q ss_pred CCc----cchhcccCCCHHH---HHHHHHcCC
Q psy3968 259 VEH----TVTEEITGVDLVQ---SQIRVAEGM 283 (1080)
Q Consensus 259 g~~----~~~e~~tGvdl~~---~~l~~alG~ 283 (1080)
++. +....++|+|+.+ .+++.++++
T Consensus 323 ~t~~s~~p~~~~a~G~~~~~l~~~li~~al~r 354 (377)
T 1ehi_A 323 FTNMSLFKRLWDYSDINNAKLVDMLIDYGFED 354 (377)
T ss_dssp CSTTCGGGTGGGGGTCCHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 742 2233579999955 455556543
No 48
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.96 E-value=4.6e-28 Score=281.18 Aligned_cols=234 Identities=19% Similarity=0.243 Sum_probs=194.4
Q ss_pred HcCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHH----HHHH
Q psy3968 36 ENDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTE----EAME 110 (1080)
Q Consensus 36 ~~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~e----e~~~ 110 (1080)
..++|+|+|. +|...|+..++..|+..|++++|+++.++.++.||..+|++++++|||+|++ ..+.+.+ ++.+
T Consensus 115 ~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~--~~~~~~~~~~~~~~~ 192 (386)
T 3e5n_A 115 LAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPF--VCFDRHTAAHADVDT 192 (386)
T ss_dssp CCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCCE--EEEEHHHHTTCCHHH
T ss_pred cCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCE--EEEeCcccchhhHHH
Confidence 4579999998 7888899999999999999999999999999999999999999999999998 4566666 6778
Q ss_pred HHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEe
Q psy3968 111 FCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYE 190 (1080)
Q Consensus 111 ~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~ 190 (1080)
++++++||+||||..++||+|+++|++.+|+.++++.+.. .+..++||+||+| +|+++.++.++...++..++
T Consensus 193 ~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~------~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~ge 265 (386)
T 3e5n_A 193 LIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA------YDHKVLVEAAVAG-REIECAVLGNAVPHASVCGE 265 (386)
T ss_dssp HHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTT------TCSEEEEEECCCS-EEEEEEEECSSSCEEEEEEE
T ss_pred HHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHh------CCCcEEEEcCCCC-eEEEEEEEeCCCceEEEeEE
Confidence 8889999999999999999999999999999999887643 2568999999999 99999999886655554444
Q ss_pred eeccc--ccccc------EEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCc-
Q psy3968 191 RDCSV--QRRHQ------KVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEH- 261 (1080)
Q Consensus 191 r~~~~--~~~~~------~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~- 261 (1080)
..+.. ..... ......|+ .++++..+++.+.+.++++++|++|++++||+++++|++||+|||||+|-+.
T Consensus 266 i~~~~~~~d~~~ky~~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~ 344 (386)
T 3e5n_A 266 VVVHDAFYSYATKYISEHGAEIVIPA-DIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCADGRIVINEVNTLPGFTRI 344 (386)
T ss_dssp ECC-----------------CEESSC-SSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred EEeCCcccchhcccCCCCCeEEEECC-CCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCcEEEEEeECCCCCCcc
Confidence 43221 11111 13446688 4999999999999999999999999999999999999999999999998632
Q ss_pred ---cchhcccCCCHHHHHHHH
Q psy3968 262 ---TVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 262 ---~~~e~~tGvdl~~~~l~~ 279 (1080)
+....+.|+|+.+++.++
T Consensus 345 S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 345 SVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp CHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHH
Confidence 223446899988776544
No 49
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.95 E-value=1.1e-27 Score=276.52 Aligned_cols=233 Identities=15% Similarity=0.184 Sum_probs=184.6
Q ss_pred cCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHH----HHHH
Q psy3968 37 NDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEE----AMEF 111 (1080)
Q Consensus 37 ~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee----~~~~ 111 (1080)
.++|+|+|.. |...|+..++..|+..|++++|+++.++.++.||..++++++++|||+|++. .+++.++ +.++
T Consensus 97 ~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~ 174 (372)
T 3tqt_A 97 YSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWH--TLSPRDATEGVYQRL 174 (372)
T ss_dssp ECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCE--EECTTSCCTTHHHHH
T ss_pred cCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEE--EEechhhhhhHHHHH
Confidence 4799999984 6778999999999999999999999999999999999999999999999984 4444432 4567
Q ss_pred HHHhCCc-EEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEe
Q psy3968 112 CLKYGLP-VIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYE 190 (1080)
Q Consensus 112 ~~~igfP-vVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~ 190 (1080)
.++++|| +||||..|+||+||++|++.+||.++++.+.. .+..++||+||+| +|+++.++.++...+..+.+
T Consensus 175 ~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~------~~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~e 247 (372)
T 3tqt_A 175 LDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFR------YDDRLMVEPRIRG-REIECAVLGNGAPKASLPGE 247 (372)
T ss_dssp HHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTT------TCSCEEEEECCCS-EEEEEEEEESSSCEECCCEE
T ss_pred HHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh------cCCCEEEECCCCC-EEEEEEEEeCCCceEeeeEE
Confidence 7889999 99999999999999999999999999887643 1568999999999 99999999875322211121
Q ss_pred ee-----ccccccc--cE-EEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCC--
Q psy3968 191 RD-----CSVQRRH--QK-VVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVE-- 260 (1080)
Q Consensus 191 r~-----~~~~~~~--~~-~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~-- 260 (1080)
.. +.+...+ .. .....|+ .++++..+++.+.+.+++++||++|.+++||+++++|++||+|||||+|-+
T Consensus 248 i~~~~~~~d~~~ky~~g~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~ 326 (372)
T 3tqt_A 248 IIPHHDYYSYDAKYLDPNGATTTTSV-DLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEINTIPGFTNI 326 (372)
T ss_dssp EECC---------------CEEESCC-CCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred EecCCCccchhhcccCCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeCCCcEEEEEEECCCCcCcc
Confidence 11 1111111 12 4567788 499999999999999999999999999999999988999999999999853
Q ss_pred --ccchhcccCCCHHHHHHHH
Q psy3968 261 --HTVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 261 --~~~~e~~tGvdl~~~~l~~ 279 (1080)
.+....++|+|+.++..++
T Consensus 327 S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 327 SMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp CHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHH
Confidence 2223457899987766544
No 50
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.95 E-value=1.4e-27 Score=276.33 Aligned_cols=232 Identities=19% Similarity=0.238 Sum_probs=182.9
Q ss_pred CCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCC-CCCCCCCCCCCCCH----HHHHHH
Q psy3968 38 DVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSG-VPIVPGTPGPITTT----EEAMEF 111 (1080)
Q Consensus 38 ~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~G-Ipvp~~~~~~v~s~----ee~~~~ 111 (1080)
++|+|+|.. |...|+..++..|+..|++++|+++.++.++.||..++++++++| ||+|++. .+.+. +++.++
T Consensus 119 ~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~--~~~~~~~~~~~~~~~ 196 (383)
T 3k3p_A 119 EEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYV--ALIEGEPLESKLAEV 196 (383)
T ss_dssp TTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEE--EEETTSCHHHHHHHH
T ss_pred CCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEE--EEeCccchhHHHHHH
Confidence 799999974 667789999999999999999999999999999999999999999 9999984 34443 567788
Q ss_pred HHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEee
Q psy3968 112 CLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYER 191 (1080)
Q Consensus 112 ~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r 191 (1080)
+++++||+||||..+++|.|+++|++.+|+.++++.++.. +..++||+||+| +|+++.++.++...+..+.+.
T Consensus 197 ~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~------~~~vlVEe~I~G-~E~~v~vl~d~~~~~~~~~ei 269 (383)
T 3k3p_A 197 EEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY------DSRVLIEQGVDA-REIEVGILGNTDVKTTLPGEI 269 (383)
T ss_dssp HHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEEESSSCEECCCEEE
T ss_pred HHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC------CCeEEEEcCCCC-eEEEEEEEeCCCeeEEeeEEE
Confidence 8899999999999999999999999999999999887653 568999999999 999999998754333222222
Q ss_pred e--cccccc-----ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCC----
Q psy3968 192 D--CSVQRR-----HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVE---- 260 (1080)
Q Consensus 192 ~--~~~~~~-----~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~---- 260 (1080)
. ..+... ........|++ ++++..+++.+.+.++++++|++|.+++||+++++|++||+|||||+|-+
T Consensus 270 ~~~~~~~d~~~ky~~g~~~~~~Pa~-l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~ 348 (383)
T 3k3p_A 270 VKDVAFYDYEAKYIDNKITMAIPAE-IDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSM 348 (383)
T ss_dssp C-----------------CEESSCC-CCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCCC--CH
T ss_pred ecCCCccchhhcccCCCeeEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEECCCCEEEEEeeCCCCCCcccH
Confidence 1 111111 12234577884 99999999999999999999999999999999988999999999999853
Q ss_pred ccchhcccCCCHHHHHHHH
Q psy3968 261 HTVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 261 ~~~~e~~tGvdl~~~~l~~ 279 (1080)
.+....+.|+|+.+++.++
T Consensus 349 ~p~~~~a~Gi~~~~li~~l 367 (383)
T 3k3p_A 349 YPLLWENMGLSYSVLIEEL 367 (383)
T ss_dssp HHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 2223456799987766554
No 51
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.95 E-value=5.3e-30 Score=330.56 Aligned_cols=211 Identities=53% Similarity=0.877 Sum_probs=188.2
Q ss_pred cchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecc
Q psy3968 783 QGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRF 862 (1080)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~ 862 (1080)
+|+||+|.++||+.+.+|+|+.++|.|+||||||||||+.++||++.++.++++.+++...|+|+||+||+++|++++++
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~ 588 (1150)
T 3hbl_A 509 SGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNF 588 (1150)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHT
T ss_pred CCHHHHHHhhCHHHHHHHHHhCCceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEE
Q psy3968 863 LHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAAL 942 (1080)
Q Consensus 863 ~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~ 942 (1080)
+.++||++.-.+......+
T Consensus 589 ~~e~~~e~l~~l~~~~~~~------------------------------------------------------------- 607 (1150)
T 3hbl_A 589 LKENPWERLERLRKAIPNV------------------------------------------------------------- 607 (1150)
T ss_dssp SCCCHHHHHHHHHHHCCSS-------------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHhCCCC-------------------------------------------------------------
Confidence 9999997421111000011
Q ss_pred EEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHH
Q psy3968 943 VVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAG 1022 (1080)
Q Consensus 943 ~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~ 1022 (1080)
.+...+++.+.+.+.+|++++++++.+.|.+.|+|++||||++||++|++.++++++
T Consensus 608 -----------------------~~~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~irif~~~sd~~~~~~~~~~~~ 664 (1150)
T 3hbl_A 608 -----------------------LFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQ 664 (1150)
T ss_dssp -----------------------EEEEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEEEEECTTCCGGGGHHHHHHHH
T ss_pred -----------------------eEEEEeccccccccccCCchhHHHHHHHHHhCCcCEEEEEeeCCHHHHHHHHHHHHH
Confidence 111345666778888999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1023 KAGGVVEAAISYTGDVSDPSK-KKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+.|.++++++|||.+..+|.. +.||++||+++++++.++|||+||||| +|+++|.
T Consensus 665 e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~ 721 (1150)
T 3hbl_A 665 EAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPK 721 (1150)
T ss_dssp HTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH
T ss_pred HHhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHH
Confidence 999999999999977676753 679999999999999999999999999 9999995
No 52
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.95 E-value=2.1e-27 Score=268.75 Aligned_cols=236 Identities=19% Similarity=0.272 Sum_probs=187.4
Q ss_pred HHcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH-
Q psy3968 35 KENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFC- 112 (1080)
Q Consensus 35 ~~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~- 112 (1080)
++.++|+|++.. |...|+..++..++..|++++|++++++.++.||..++++|+++|||+|++ ..+.+.+++.+++
T Consensus 62 ~~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~--~~~~~~~~~~~~~~ 139 (317)
T 4eg0_A 62 KDEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPF--ETVMRGDDYAARAT 139 (317)
T ss_dssp HHTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCE--EEEETTSCHHHHHH
T ss_pred hhcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCE--EEEECchhHHHHHH
Confidence 457899999974 456688889999999999999999999999999999999999999999998 4566666666666
Q ss_pred ---HHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccC-CCcEEEEEEEEecCCcEEEE
Q psy3968 113 ---LKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE-RPRHIEVQLLGDKAGNVVHL 188 (1080)
Q Consensus 113 ---~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~-G~~ei~v~vl~d~~G~vv~l 188 (1080)
++++||+||||..|+||+|+++|++.+|+.++++.+.. .+..++||+||+ | +|+++.++.+..+.++.+
T Consensus 140 ~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~i~~G-~E~~v~vl~~~~~~~~~i 212 (317)
T 4eg0_A 140 DIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT------HDKIVIVEKSIEGG-GEYTACIAGDLDLPLIKI 212 (317)
T ss_dssp HHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTT------TCSEEEEEECCCSS-EEEEEEEETTCCCCCEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------CCCeEEEEcCCCCC-cEEEEEEECCcccceEEE
Confidence 78999999999999999999999999999999887542 256899999999 8 999999998766555554
Q ss_pred Eeeeccc--ccc--ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCc---
Q psy3968 189 YERDCSV--QRR--HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEH--- 261 (1080)
Q Consensus 189 ~~r~~~~--~~~--~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~--- 261 (1080)
......+ ... ........|+ .++++..+++.+.+.++++++|++|.+++||+++++|++||+|||||++-+.
T Consensus 213 ~~~~~~~~~~~k~~~g~~~~~~P~-~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~ 291 (317)
T 4eg0_A 213 VPAGEFYDYHAKYVANDTQYLIPC-GLPAEQETELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSL 291 (317)
T ss_dssp EC---------------CEEESSC-SSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSH
T ss_pred eeCCceechhhcccCCCeeEEcCC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccH
Confidence 3321111 001 1223456788 5999999999999999999999999999999999989999999999998632
Q ss_pred -cchhcccCCCHHHHHHHHH
Q psy3968 262 -TVTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 262 -~~~e~~tGvdl~~~~l~~a 280 (1080)
+......|+|+.+++.++.
T Consensus 292 ~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 292 PPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 1234468999998887764
No 53
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.95 E-value=3.7e-27 Score=271.92 Aligned_cols=235 Identities=21% Similarity=0.216 Sum_probs=189.3
Q ss_pred HHcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHH-------
Q psy3968 35 KENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTE------- 106 (1080)
Q Consensus 35 ~~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~e------- 106 (1080)
+..++|+|+|.. |...|+..++..++..|++++|++++++.++.||..++++|+++|||+|++ ..+.+.+
T Consensus 84 ~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~--~~~~~~~~~~~~~~ 161 (364)
T 2i87_A 84 SGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPY--ISFLRSEYEKYEHN 161 (364)
T ss_dssp TSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCE--EEEEHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCE--EEEechhhcccchh
Confidence 356799999986 677788888899999999999999999999999999999999999999998 3455554
Q ss_pred HHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEE
Q psy3968 107 EAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVV 186 (1080)
Q Consensus 107 e~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv 186 (1080)
++.+++++++||+||||..|+||+||++|++.++|.++++.+.. .+..++||+||+| +|+++.++.++++.++
T Consensus 162 ~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~I~G-~E~~v~vl~~~~~~~~ 234 (364)
T 2i87_A 162 ILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ------FDRKLVIEQGVNA-REIEVAVLGNDYPEAT 234 (364)
T ss_dssp HHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT------TCSEEEEEECCCC-EEEEEEEEESSSCEEC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEEeCccC-eEEEEEEEcCCCcEEe
Confidence 46677788999999999999999999999999999999887643 2568999999999 8999999987654333
Q ss_pred EEEeeec--ccccccc-----EEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCC
Q psy3968 187 HLYERDC--SVQRRHQ-----KVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 187 ~l~~r~~--~~~~~~~-----~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g 259 (1080)
..++... ....... ......|+ .++++..+++.+++.+++++||++|.+++||+++++|++||+|||||+++
T Consensus 235 ~~~e~~~~~~~~~~~~k~~~g~~~~~~pa-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~ 313 (364)
T 2i87_A 235 WPGEVVKDVAFYDYKSKYKDGKVQLQIPA-DLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINETNAMPGF 313 (364)
T ss_dssp CCEEECCSCCC-----------CCEESSC-SSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTTCCEEEEEEESSCCC
T ss_pred eeEEEecCCCcCCHHHcccCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCEEEEEEeCCCCC
Confidence 3333221 1111111 12345787 48999999999999999999999999999999998899999999999998
Q ss_pred Ccc----chhcccCCCHHHHHHHH
Q psy3968 260 EHT----VTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 260 ~~~----~~e~~tGvdl~~~~l~~ 279 (1080)
+.. ....++|+|+.+++.++
T Consensus 314 t~~s~~p~~~~~~G~~~~~l~~~l 337 (364)
T 2i87_A 314 TAFSMYPKLWENMGLSYPELITKL 337 (364)
T ss_dssp STTSHHHHHHHHTTCCHHHHHHHH
T ss_pred CchhHHHHHHHHhCCCHHHHHHHH
Confidence 422 22346899986664443
No 54
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=99.95 E-value=3.4e-29 Score=288.81 Aligned_cols=166 Identities=19% Similarity=0.293 Sum_probs=136.9
Q ss_pred eeeeccccCccChHHHHHHHHHHHHHC-CCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHH
Q psy3968 465 LINTFDMAGLLKPRAAKLLIGAIREKH-PDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVA 543 (1080)
Q Consensus 465 ~i~i~Dt~G~~~P~~~~~lv~~l~~~~-p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~ 543 (1080)
+|+||||+|+++|.+++++|+++++.+ |+++|++|||||+|||+||+++|+++||++||+|++|||+|+||++||++++
T Consensus 160 ~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv~ 239 (382)
T 2ztj_A 160 RVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGERNGITPLGGFLA 239 (382)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccccccchhHHHHHH
Confidence 899999999999999999999999985 5899999999999999999999999999999999999999999999999999
Q ss_pred HHhc---CCCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCC---CCchhhcHHHHHHHCCCCccHHH
Q psy3968 544 SLQG---SDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEI---PGGQYTNLQFQAYSLGLGEFFED 617 (1080)
Q Consensus 544 ~l~~---~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i---PGG~~snl~~ql~~~g~~~~~~e 617 (1080)
+|+. +|++|++|+++|.+++++++++.+.+.|++.. + .+..++.|+. |+|+++|..
T Consensus 240 ~L~~~~~~g~~t~idl~~L~~~s~~v~~~~~~~~~~~~p--~--vG~~~f~h~sGiH~~g~~k~~~-------------- 301 (382)
T 2ztj_A 240 RMYTLQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNNY--I--TGETAFSHKAGMHLKAIYINPE-------------- 301 (382)
T ss_dssp HHHHHCHHHHHHHSCGGGHHHHHHHHHHHHTCCCCTTCT--T--TSTTTTEECCHHHHHHHHHCGG--------------
T ss_pred HHHhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCcCCC--c--CCcchhheecccCCchhhcChh--------------
Confidence 9873 35889999999999999999999998887753 3 3578888888 899999951
Q ss_pred HHHHHHHH-HHhCCCccccCCCchhhHHhhHHHHh
Q psy3968 618 VKKAYREA-NLLLGDIIKVTPSSKVVGDFAQFMVQ 651 (1080)
Q Consensus 618 v~~~~~~v-r~~lG~~~~VTP~Sqivg~qA~~~v~ 651 (1080)
.|.-+ .+++|+++.|||+||++|.+|+++++
T Consensus 302 ---~Ye~~~P~~vG~~~~v~~~s~~sG~~av~~~l 333 (382)
T 2ztj_A 302 ---AYEPYPPEVFGVKRKLIIASRLTGRHAIKARA 333 (382)
T ss_dssp ---GGCSSCGGGGTCCCEECCC-------------
T ss_pred ---hhcccCHHHcCCccEEEecccchhHHHHHHHH
Confidence 12222 47899999999999999999987554
No 55
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.95 E-value=2.3e-29 Score=325.47 Aligned_cols=213 Identities=52% Similarity=0.857 Sum_probs=189.2
Q ss_pred CCcchHHhhhhcCCccchhhhhcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchhee
Q psy3968 781 PPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860 (1080)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~ 860 (1080)
++.|+||+|.++||+.+++|+|++++|.|+|||||||+||++++||++.++.++++.+++.+.++++||+||+++|+++.
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~DtTLRDG~Qs~~~~~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~ 604 (1165)
T 2qf7_A 525 VKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSM 604 (1165)
T ss_dssp CCCCHHHHHHHHCHHHHHHHHHHCSSCEEEECTTTHHHHHHHTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHH
T ss_pred CCCCHHHHHHhhCHHHHHHHhhcCCceEEEecccccccccCCcccCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cccccCCeEEEEEECCccccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCC
Q psy3968 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGA 940 (1080)
Q Consensus 861 r~~~~~~~~~~~~v~g~~~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~ 940 (1080)
|++.++||+..-++......+
T Consensus 605 ~f~~~~p~e~l~~~~~~~~~~----------------------------------------------------------- 625 (1165)
T 2qf7_A 605 RFLTEDPWERLALIREGAPNL----------------------------------------------------------- 625 (1165)
T ss_dssp HHHCCCHHHHHHHHHHHCTTS-----------------------------------------------------------
T ss_pred hhcCCCHHHHHHHHHHHchhh-----------------------------------------------------------
Confidence 999999986321110000000
Q ss_pred EEEEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHH
Q psy3968 941 ALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEA 1020 (1080)
Q Consensus 941 ~~~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~ 1020 (1080)
.....++..+++.+..+++++++.+.+.|.+.|+|.++|||+|||++||+.++++
T Consensus 626 -------------------------~~~~l~R~~n~vg~~~~~~~~~~~~i~~a~~~g~d~irif~sl~~~~~~~~~i~~ 680 (1165)
T 2qf7_A 626 -------------------------LLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDA 680 (1165)
T ss_dssp -------------------------EEEEEEETTTBTCSSCCCHHHHHHHHHHHHHHTCCEEEEECTTCCGGGGHHHHHH
T ss_pred -------------------------HHHHHhccccccccccCCchhHHHHHHHHHhcCcCEEEEEeeHHHHHHHHHHHHH
Confidence 0012345556777788999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1021 AGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+|+.|+++++++|||.++.||.++.||++||++++++++++|||+||||| +|+++|.
T Consensus 681 ~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~ 738 (1165)
T 2qf7_A 681 IAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPA 738 (1165)
T ss_dssp HHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH
T ss_pred HHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCHH
Confidence 99999999999999998889988899999999999999999999999999 9999995
No 56
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=99.95 E-value=9.6e-29 Score=280.63 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=135.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCC
Q psy3968 442 TPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGA 519 (1080)
Q Consensus 442 ~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~ 519 (1080)
||+.++.+++++..++..+. +| ++|+|+||+|+++|.+++++|+++++++|+++|++|+|||+|||+||+++|+++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa 239 (337)
T 3ble_A 160 WSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGV 239 (337)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCC
Confidence 45577777777777766544 89 89999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccCCCCCCCCCCcHHHHHHHHhcC-CCCCCCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCC---C
Q psy3968 520 DVVDVAVDSMSGMTSQPSMGAVVASLQGS-DIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEI---P 595 (1080)
Q Consensus 520 ~~vd~s~~glg~~~g~~~~e~~v~~l~~~-g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i---P 595 (1080)
++||+|++|||+++||++||+++++|+.+ |++|++|+++|.+++++++++.+.+.++.. ...+.++|.|+. |
T Consensus 240 ~~vd~tv~GlG~~aGN~~~E~lv~~L~~~~g~~tgidl~~L~~~~~~v~~~~~~~~~~~~----~~vg~~~f~h~~GiH~ 315 (337)
T 3ble_A 240 KGLHASINGLGERAGNTPLEALVTTIHDKSNSKTNINEIAITEASRLVEVFSGKRISANR----PIVGEDVFTQTAGVHA 315 (337)
T ss_dssp SEEEEBGGGCSSTTCBCBHHHHHHHHHHHSSCCCCCCGGGHHHHHHHHHHHHCCCCCTTC----TTTSTTTTCC------
T ss_pred CEEEEecccccccccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCCCc----cchhhhhhheecccCc
Confidence 99999999999999999999999999977 999999999999999999999988887664 345799999999 9
Q ss_pred CchhhcH
Q psy3968 596 GGQYTNL 602 (1080)
Q Consensus 596 GG~~snl 602 (1080)
+||++|.
T Consensus 316 ~g~~k~~ 322 (337)
T 3ble_A 316 DGDKKGN 322 (337)
T ss_dssp ------C
T ss_pred CceeCCc
Confidence 9999985
No 57
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.95 E-value=3.7e-27 Score=272.43 Aligned_cols=234 Identities=21% Similarity=0.281 Sum_probs=189.6
Q ss_pred CCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHH--HHHHHHH
Q psy3968 38 DVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEE--AMEFCLK 114 (1080)
Q Consensus 38 ~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee--~~~~~~~ 114 (1080)
++|+|+|.. |...|+..++..++..|++++|+++.++.++.||..++++|+++|||+|++. .+++.++ ..+..++
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~~~~~ 186 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYA--VLRPPRSTLHRQECER 186 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCCEE--EECTTCCCCCHHHHHH
T ss_pred CccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EEECcccchhHHHHHh
Confidence 799999996 7888999999999999999999999999999999999999999999999984 4444433 1334678
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCC--cEEEEEeee
Q psy3968 115 YGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAG--NVVHLYERD 192 (1080)
Q Consensus 115 igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G--~vv~l~~r~ 192 (1080)
++||+||||..|++|+||++|++.+||.++++.+... +..++||+||+| +|+++.++.++.+ .+..+.+..
T Consensus 187 lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~~v~vl~~~~~~~~~~~~~ei~ 259 (373)
T 3lwb_A 187 LGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH------DPKVIVEAAISG-RELECGVLEMPDGTLEASTLGEIR 259 (373)
T ss_dssp HCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT------CSSEEEEECCEE-EEEEEEEEECTTSCEEECCCEEEE
T ss_pred cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEeCCCCC-eEEEEEEEECCCCceEEeeeeEEE
Confidence 9999999999999999999999999999999877542 568999999999 9999999988766 233333332
Q ss_pred cc--------cccc-----ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCC
Q psy3968 193 CS--------VQRR-----HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 193 ~~--------~~~~-----~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g 259 (1080)
+. +.+. ........|+ .++++..+++++.+.+++++||++|.+++||+++++|+ ||+|||||+|.
T Consensus 260 ~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~dg~-~vlEIN~~PG~ 337 (373)
T 3lwb_A 260 VAGVRGREDSFYDFATKYLDDAAELDVPA-KVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTDDGP-VINEINTMPGF 337 (373)
T ss_dssp CCSTTCSEESSSCHHHHHTCTTCEEESSC-CCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEE-EEEEEESSCCC
T ss_pred ccCCCCccccccchhhcccCCCceEEeCC-CCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEECCCC-EEEEecCCCCC
Confidence 22 1111 1123456788 49999999999999999999999999999999999898 99999999985
Q ss_pred Cc----cchhcccCCCHHHHH---HHHHcC
Q psy3968 260 EH----TVTEEITGVDLVQSQ---IRVAEG 282 (1080)
Q Consensus 260 ~~----~~~e~~tGvdl~~~~---l~~alG 282 (1080)
+. +....++|+|+.+++ ++.++.
T Consensus 338 t~~S~~p~~~~a~Gi~~~~li~~li~~a~~ 367 (373)
T 3lwb_A 338 TTISMYPRMWAASGVDYPTLLATMIETTLA 367 (373)
T ss_dssp STTSHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 32 113457899976654 444443
No 58
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.95 E-value=6.9e-27 Score=265.19 Aligned_cols=231 Identities=23% Similarity=0.305 Sum_probs=187.6
Q ss_pred HcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy3968 36 ENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK 114 (1080)
Q Consensus 36 ~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ 114 (1080)
..++|+|+|.. |...|+..++..++..|++++|++++++.++.||..++++++++|||+|++. .+++.++. .. +
T Consensus 74 ~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~--~~-~ 148 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV--AVRKGEPP--VV-P 148 (322)
T ss_dssp CTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEETTSCC--CC-C
T ss_pred ccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEECchhh--hh-c
Confidence 46899999986 7778888899999999999999999999999999999999999999999984 34443331 22 6
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeeec-
Q psy3968 115 YGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDC- 193 (1080)
Q Consensus 115 igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~~- 193 (1080)
++||+||||..|++|+|+++|++.+|+.++++.+.. .+..++||+||+|.+|+++.++.++++.++...+...
T Consensus 149 ~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~ei~~~ 222 (322)
T 2fb9_A 149 FDPPFFVKPANTGSSVGISRVERFQDLEAALALAFR------YDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYE 222 (322)
T ss_dssp SCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTT------TCSEEEEEECCSSCEEEEEEEESSSSCEEEEEEEEEEE
T ss_pred cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEEeCCCCCeeEEEEEEeCCCceEeeeEEEeeC
Confidence 899999999999999999999999999999887643 2568999999999789999999876555554443321
Q ss_pred -cccccc-----cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCcc----c
Q psy3968 194 -SVQRRH-----QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHT----V 263 (1080)
Q Consensus 194 -~~~~~~-----~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~----~ 263 (1080)
...+.. .......|+ .++++..+++.+.+.++++++|++|.+++||+++ +|++||+|||||++.+.. .
T Consensus 223 ~~~~~~~~k~~~g~~~~~~Pa-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s~~p~ 300 (322)
T 2fb9_A 223 APFYDYETKYTPGRAELLIPA-PLDPGTQETVQELALKAYKVLGVRGMARVDFFLA-EGELYLNELNTIPGFTPTSMYPR 300 (322)
T ss_dssp CCEEETTTEEECCEEEEESSC-CCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSCHHHH
T ss_pred CCccCHHHcccCCCeEEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE-CCcEEEEEEECCCCCCcccHHHH
Confidence 111111 123456788 4898999999999999999999999999999999 889999999999998522 1
Q ss_pred hhcccCCCHHHHHHHH
Q psy3968 264 TEEITGVDLVQSQIRV 279 (1080)
Q Consensus 264 ~e~~tGvdl~~~~l~~ 279 (1080)
...++|+|+.+++.++
T Consensus 301 ~~~~~G~~~~~l~~~l 316 (322)
T 2fb9_A 301 LFEAGGVAYPELLRRL 316 (322)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHH
Confidence 2346899988876654
No 59
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.94 E-value=5.7e-27 Score=268.50 Aligned_cols=232 Identities=19% Similarity=0.214 Sum_probs=186.8
Q ss_pred HcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy3968 36 ENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK 114 (1080)
Q Consensus 36 ~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ 114 (1080)
+.++|+|+|.. |...|+..++..++..|++++|+++.++.++.||..++++++++|||+|++. .+++.+ ..+.+.
T Consensus 88 ~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~--~~~~~~ 163 (346)
T 3se7_A 88 TIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFW--TVTADE--KIPTDQ 163 (346)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EEETTS--CCCTTT
T ss_pred ccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEcCcH--HHHHHh
Confidence 46799999985 7888999999999999999999999999999999999999999999999984 344433 334567
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEE-EEEeeec
Q psy3968 115 YGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVV-HLYERDC 193 (1080)
Q Consensus 115 igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv-~l~~r~~ 193 (1080)
++||+||||..+++|+|++++++.+|+.++++.+.. .+..++||+||+| +|+++.++.++.+..+ .+.+...
T Consensus 164 lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~G-~E~~v~vl~~~~~~~~~~~~e~~~ 236 (346)
T 3se7_A 164 LTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAARE------YDSKVLIEEAVIG-TEIGCAVMGNGPELITGEVDQITL 236 (346)
T ss_dssp CCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTT------TCSEEEEEECCCS-EEEEEEEEEETTEEEECCCEEECC
T ss_pred cCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHh------CCCcEEEEeCcCC-EEEEEEEEecCCCeEEEeeEEEec
Confidence 899999999999999999999999999999887643 2568999999999 9999999988554222 2222211
Q ss_pred c--c----cccc-----cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCC-c
Q psy3968 194 S--V----QRRH-----QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVE-H 261 (1080)
Q Consensus 194 ~--~----~~~~-----~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~-~ 261 (1080)
. . +++. .......|+ .++++..+++.+.+.++++++|++|.+++||+++++|++||+|||+|++.+ +
T Consensus 237 ~~~~~d~~q~~~~ky~~~~~~~~~pa-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~ 315 (346)
T 3se7_A 237 SHGFFKIHQESTPESGSDNSAVTVPA-DISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSY 315 (346)
T ss_dssp C--------------CGGGSCEESSC-CCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTSCEEEEEEESSCCCSTT
T ss_pred CCCCcCcccchhccccCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeCCCCEEEEEEeCCCCCCcc
Confidence 1 0 0001 122346787 499999999999999999999999999999999998999999999999863 2
Q ss_pred ---cchhcccCCCHHHHHHHH
Q psy3968 262 ---TVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 262 ---~~~e~~tGvdl~~~~l~~ 279 (1080)
+....++|+|+.+++.++
T Consensus 316 s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 316 SRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp CHHHHHHHHTTCCHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHH
Confidence 223457899998866554
No 60
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.94 E-value=2.4e-26 Score=262.97 Aligned_cols=233 Identities=19% Similarity=0.270 Sum_probs=186.9
Q ss_pred HcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy3968 36 ENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK 114 (1080)
Q Consensus 36 ~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ 114 (1080)
..++|+|+|.. |...|+..++..++..|++++|+++.++.++.||..++++++++|||+|++. .+++.+++.. ++
T Consensus 88 ~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~--~~ 163 (343)
T 1e4e_A 88 INHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW--VINKDDRPVA--AT 163 (343)
T ss_dssp EEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EECTTCCCCG--GG
T ss_pred cccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEE--EEechhhhhh--hc
Confidence 46799999984 4566777888899999999999999999999999999999999999999983 4555444321 57
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEE-EEeeec
Q psy3968 115 YGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH-LYERDC 193 (1080)
Q Consensus 115 igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~-l~~r~~ 193 (1080)
++||+||||..|+||+|+++|++.+|+.++++.+.. .+.+++||+||+| +|+++.++.++.+..+. +.+...
T Consensus 164 ~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~I~G-~E~~v~vl~~~~~~~~~~~~ei~~ 236 (343)
T 1e4e_A 164 FTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ------YDSKILIEQAVSG-CEVGCAVLGNSAALVVGEVDQIRL 236 (343)
T ss_dssp SCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT------TCSSEEEEECCCS-EEEEEEEEEETTCCEECCCEEEEE
T ss_pred cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEEeCcCC-eEEEEEEEeCCCCeEEeeeEEEee
Confidence 899999999999999999999999999999887643 2568999999999 99999999886542221 122211
Q ss_pred -----ccccc------ccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCc-
Q psy3968 194 -----SVQRR------HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEH- 261 (1080)
Q Consensus 194 -----~~~~~------~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~- 261 (1080)
.+... ........|+ .++++..+++.+++.+++++||++|.+++||+++++|++||+|||||++.+.
T Consensus 237 ~~~~~~~~~k~~~~~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~ 315 (343)
T 1e4e_A 237 QYGIFRIHQEVEPEKGSENAVITVPA-DLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNTLPGFTSY 315 (343)
T ss_dssp SSSCCCGGGSSSGGGCCSSEEECSSC-SSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred CCCccCHhhcccccCCCCCeeEEeCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeCCCCEEEEEeeCCCCCCcc
Confidence 00000 1224456787 4999999999999999999999999999999999899999999999999852
Q ss_pred ---cchhcccCCCHHHHHHHHH
Q psy3968 262 ---TVTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 262 ---~~~e~~tGvdl~~~~l~~a 280 (1080)
+....++|+|+.++..++.
T Consensus 316 s~~p~~~~~~G~~~~~l~~~li 337 (343)
T 1e4e_A 316 SRYPRMMAAAGISLPELIDRLI 337 (343)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHH
Confidence 2234567999988876653
No 61
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.94 E-value=7.6e-26 Score=253.78 Aligned_cols=231 Identities=19% Similarity=0.302 Sum_probs=186.9
Q ss_pred HcCCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH----
Q psy3968 36 ENDVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAME---- 110 (1080)
Q Consensus 36 ~~~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~---- 110 (1080)
+.++|+|++.. +...|+..+...++..|++++|++++++..+.||..++++++++|||+|++ ..+++. ++.+
T Consensus 52 ~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~--~~~~~~-~~~~~~~~ 128 (306)
T 1iow_A 52 SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPW--VALTRA-EFEKGLSD 128 (306)
T ss_dssp TTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCE--EEEEHH-HHHHCCCT
T ss_pred ccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCe--EEEchh-hhhccchh
Confidence 45789998874 334466677788888999999999999999999999999999999999998 346666 6666
Q ss_pred ----HHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEE
Q psy3968 111 ----FCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVV 186 (1080)
Q Consensus 111 ----~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv 186 (1080)
++++++||+|+||..|+||+|++++++.+++.++++.+.. + +..+++|+||+| +|+++.++ + |+++
T Consensus 129 ~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~-----~-~~~~lvee~i~g-~e~~v~~~-~--g~~~ 198 (306)
T 1iow_A 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-----H-DEEVLIEKWLSG-PEFTVAIL-G--EEIL 198 (306)
T ss_dssp HHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT-----T-CSEEEEEECCCC-CEEEEEEE-T--TEEC
T ss_pred hhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh-----h-CCCEEEEeCcCC-EEEEEEEE-C--CCcc
Confidence 7788999999999999999999999999999998876542 1 468999999999 89999998 2 3443
Q ss_pred EEEeeecc-----ccc--cccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCC
Q psy3968 187 HLYERDCS-----VQR--RHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 187 ~l~~r~~~-----~~~--~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g 259 (1080)
.+.+.... ... .........|+ .++++..+++.+.+.++++++|+.|.+++||+++++|++||+|+|||+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~~~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~g~~~~iEiN~rpg~ 277 (306)
T 1iow_A 199 PSIRIQPSGTFYDYEAKFLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 (306)
T ss_dssp CCEEEECSSSSSCHHHHHTCSCCEEESSC-CCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECTTSCEEEEEEESSCCC
T ss_pred ceEEEEeCCCeEchhheecCCCeeEEcCC-CCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcCCCCEEEEEecCCCCC
Confidence 33322110 000 01234567787 48899999999999999999999999999999999899999999999988
Q ss_pred Ccc----chhcccCCCHHHHHHHHH
Q psy3968 260 EHT----VTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 260 ~~~----~~e~~tGvdl~~~~l~~a 280 (1080)
... .....+|+|+.+++.++.
T Consensus 278 ~~~s~~p~~~~~~G~~~~~~~~~~~ 302 (306)
T 1iow_A 278 TSHSLVPMAARQAGMSFSQLVVRIL 302 (306)
T ss_dssp STTCHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHH
Confidence 532 234578999999998875
No 62
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.94 E-value=5.2e-26 Score=255.78 Aligned_cols=232 Identities=16% Similarity=0.215 Sum_probs=180.0
Q ss_pred HHcCCCEEEeCCC-cccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HH
Q psy3968 35 KENDVDAIHPGYG-FLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAME-FC 112 (1080)
Q Consensus 35 ~~~~iDaVipg~g-~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~-~~ 112 (1080)
+..++|+|++... ...|+..++..++..|++++|++++++.++.||..++++++++|||+|++ ..+.+.+++.. ++
T Consensus 52 ~~~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~--~~~~~~~~~~~~~~ 129 (307)
T 3r5x_A 52 KAKDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDW--IELTKMEDLNFDEL 129 (307)
T ss_dssp HTTTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCE--EEEESSSCCCHHHH
T ss_pred hccCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCE--EEEeChhhhhHHHH
Confidence 3368999999864 44467778889999999999999999999999999999999999999998 34555555543 67
Q ss_pred HHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEEEEeee
Q psy3968 113 LKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERD 192 (1080)
Q Consensus 113 ~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~l~~r~ 192 (1080)
+.++||+|+||..|+||+|++++++.+++.++++.+... +.++++|+||+| +|+++.++. |+++.+....
T Consensus 130 ~~~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvee~i~G-~e~~v~v~~---g~~~~~~~~~ 199 (307)
T 3r5x_A 130 DKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW------DSEVVIEKYIKG-EEITCSIFD---GKQLPIISIR 199 (307)
T ss_dssp HHHCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEET---TEECCCEEEE
T ss_pred HhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEECCcCC-EEEEEEEEC---CEEeeEEEEE
Confidence 889999999999999999999999999999999887653 568999999999 999999863 2432221111
Q ss_pred cccc--ccccEE----EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCcc----
Q psy3968 193 CSVQ--RRHQKV----VEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHT---- 262 (1080)
Q Consensus 193 ~~~~--~~~~~~----~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~---- 262 (1080)
.... ....+. ....|+ .++++..+++.+.+.++++++|++|.+++||+++ +|++||+|+|||++.+..
T Consensus 200 ~~~~~~~~~~~~~~~g~~~~p~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s~~~ 277 (307)
T 3r5x_A 200 HAAEFFDYNAKYDDASTIEEVI-ELPAELKERVNKASLACYKALKCSVYARVDMMVK-DGIPYVMEVNTLPGMTQASLLP 277 (307)
T ss_dssp EEEEEETTEEEEEEEEEEEEEC-CCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE-TTEEEEEEEESSCCCSTTSHHH
T ss_pred cCCcccChhhcCCCCCCeEecC-CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEE-CCeEEEEEEcCCCCCCccCHHH
Confidence 1111 111111 223377 5899999999999999999999999999999999 688999999999986422
Q ss_pred chhcccCCCHHHHHHHHH
Q psy3968 263 VTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 263 ~~e~~tGvdl~~~~l~~a 280 (1080)
.....+|+|+.+++.++.
T Consensus 278 ~~~~~~G~~~~~li~~ll 295 (307)
T 3r5x_A 278 KSADAAGIHYSKLLDMII 295 (307)
T ss_dssp HHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 235578999988766553
No 63
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.93 E-value=1.1e-25 Score=259.39 Aligned_cols=231 Identities=16% Similarity=0.175 Sum_probs=182.6
Q ss_pred CCCEEEeCC-CcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHH--HHHHHHHH
Q psy3968 38 DVDAIHPGY-GFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTE--EAMEFCLK 114 (1080)
Q Consensus 38 ~iDaVipg~-g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~e--e~~~~~~~ 114 (1080)
++|+|+|.. |...|+..++..++..|++++|+++.++.++.||..++++|+++|||+|++. .+.+.+ ++.+ +++
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~-~~~ 183 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYV--LLNEKNRANALD-LMN 183 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCE--EECTTTGGGHHH-HCC
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEE--EEeCCchHHHHH-Hhc
Confidence 799999974 5677888889999999999999999999999999999999999999999983 455554 5666 678
Q ss_pred hCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEE-EEEEEecCCcEEEEEeeec
Q psy3968 115 YGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIE-VQLLGDKAGNVVHLYERDC 193 (1080)
Q Consensus 115 igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~-v~vl~d~~G~vv~l~~r~~ 193 (1080)
++||+||||..|+||.|+++|++.+||.++++.+.. + +..++||+||+|.+|++ +.+.. +|+++....+-.
T Consensus 184 lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~-----~-~~~vlVEe~I~G~~E~svi~v~v--~g~~~~~~~ei~ 255 (367)
T 2pvp_A 184 FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFE-----Y-SKEVLIEPFIQGVKEYNLAGCKI--KKDFCFSYIEEP 255 (367)
T ss_dssp SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTT-----T-CSCEEEEECCTTCEEEEEEEEEE--TTEEEEEEEEET
T ss_pred cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh-----c-CCcEEEEeCCCCCceeeEEEEEE--CCEEEEEEEEEe
Confidence 999999999999999999999999999999887643 1 56899999999977855 44444 355333221111
Q ss_pred c---ccccc-----cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchh
Q psy3968 194 S---VQRRH-----QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTE 265 (1080)
Q Consensus 194 ~---~~~~~-----~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e 265 (1080)
. ..... .......|+ .++++..+++++.+.+++++||++|.+++||+++ +|++||+|||||++++....
T Consensus 256 ~~~~~~d~~~ky~~g~~~~~~Pa-~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s~- 332 (367)
T 2pvp_A 256 NKQEFLDFKQKYLDFSRNKAPKA-SLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI-ENEVYLNEINPIPGSLANYL- 332 (367)
T ss_dssp TTTEEECCCCSSCCSCCCSCCCC-CCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE-TTEEEEEEEESSCGGGGGGG-
T ss_pred cCCceEcccccccCCCeeEEecC-CCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcccc-
Confidence 0 00110 111235677 4899999999999999999999999999999999 88899999999998743221
Q ss_pred cccCCCHHHHHHHHHcCCCC
Q psy3968 266 EITGVDLVQSQIRVAEGMTL 285 (1080)
Q Consensus 266 ~~tGvdl~~~~l~~alG~~l 285 (1080)
.. |+.++..++..+.++
T Consensus 333 -~p--~~~~l~~~li~~~~~ 349 (367)
T 2pvp_A 333 -FD--DFKTTLENLAQSLPK 349 (367)
T ss_dssp -SS--SHHHHHHHHHHHCC-
T ss_pred -cC--CHHHHHHHHHhCccc
Confidence 11 889998888888654
No 64
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=99.93 E-value=3.2e-27 Score=262.68 Aligned_cols=138 Identities=22% Similarity=0.231 Sum_probs=121.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCC---CceEEeeCCCCchhHHHHHHH
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPD---IPIHIHTHDTSGAGVASMIAC 514 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~---~~i~~H~H~t~Gla~an~l~A 514 (1080)
|+|++.++.+++++..++..+. +| ++|+|+||+|+++|.+++++++++++++|+ ++|++|+|||+|||+||+++|
T Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA 218 (293)
T 3ewb_X 139 FSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAA 218 (293)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHH
Confidence 4677777888888877777655 89 899999999999999999999999999984 789999999999999999999
Q ss_pred HHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc----CCCCCCCCHHHHHHHHHHHHHHHhccCCCC
Q psy3968 515 AEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG----SDIDTGLDLKDISAYSAYWEQTRQLYAPFE 577 (1080)
Q Consensus 515 i~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 577 (1080)
+++||++||+|++|||+++||++||+++++|+. +|++|++|+++|.+++++++++.+...+.+
T Consensus 219 ~~aGa~~vd~sv~GlGeraGN~~~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~ 285 (293)
T 3ewb_X 219 IENGARRVEGTINGIGERAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLSGMPVPRN 285 (293)
T ss_dssp HHTTCCEEEEBGGGCCTTTCBCBHHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHHHHC--------
T ss_pred HHhCCCEEEeeccccccccccHhHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999999999985 799999999999999999999987766543
No 65
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=99.93 E-value=2.6e-27 Score=266.89 Aligned_cols=137 Identities=17% Similarity=0.208 Sum_probs=125.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCC---CceEEeeCCCCchhHHHHHHH
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPD---IPIHIHTHDTSGAGVASMIAC 514 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~---~~i~~H~H~t~Gla~an~l~A 514 (1080)
|+||+.++.+++++..++..+. +| ++|+|+||+|+++|.+++++|+++++++|+ ++|++|+|||+|||+||+++|
T Consensus 140 f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA 219 (325)
T 3eeg_A 140 FFCEDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAA 219 (325)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHH
T ss_pred EEccccccchHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHH
Confidence 5899999999998888877655 79 899999999999999999999999999986 899999999999999999999
Q ss_pred HHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc----CCCCCCCCHHHHHHHHHHHHHHHhccCCC
Q psy3968 515 AEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG----SDIDTGLDLKDISAYSAYWEQTRQLYAPF 576 (1080)
Q Consensus 515 i~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~~~~~ 576 (1080)
+++||++||+|++|||+++||++||+++++|+. +|++|++|+++|.++++|++++.+...|.
T Consensus 220 ~~aGa~~vd~tv~GlGer~GN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~ 285 (325)
T 3eeg_A 220 LQNGARQVECTINGIGERAGNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLMRMQVQS 285 (325)
T ss_dssp HHHTCCEEEEBGGGCCSTTCCCBHHHHHHHHHHTHHHHCEECCCCGGGHHHHHHHHHHHTTC----
T ss_pred HHhCCCEEEEecccccccccchhHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999984 79999999999999999999997665443
No 66
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=99.93 E-value=5.6e-27 Score=262.40 Aligned_cols=137 Identities=20% Similarity=0.311 Sum_probs=128.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHH
Q psy3968 439 GPSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAE 516 (1080)
Q Consensus 439 g~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~ 516 (1080)
.|+||++++.+++++..++..+. +| ++|+|+||+|+++|.+++++|+++++.+|+++|++|+|||+|||+||+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~ 224 (307)
T 1ydo_A 145 VFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQ 224 (307)
T ss_dssp TTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHH
T ss_pred EecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHH
Confidence 47999999999998888877655 78 89999999999999999999999999998899999999999999999999999
Q ss_pred cCCCEEeeccCCCCC------CCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q psy3968 517 AGADVVDVAVDSMSG------MTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAP 575 (1080)
Q Consensus 517 aG~~~vd~s~~glg~------~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~ 575 (1080)
+||++||+|++|||| ++||++||+++++|+.+|++|++|+++|.+++++++++.+...|
T Consensus 225 aGa~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~~g~~t~idl~~L~~~~~~v~~~~~~~~~ 289 (307)
T 1ydo_A 225 MGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLP 289 (307)
T ss_dssp HTCCEEEEBGGGCCEETTEEEEECBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred hCCCEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCc
Confidence 999999999999999 78999999999999999999999999999999999999766443
No 67
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=99.92 E-value=9.8e-27 Score=268.12 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=138.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCC
Q psy3968 442 TPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGA 519 (1080)
Q Consensus 442 ~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~ 519 (1080)
++...+.+++++..++..+. +| ++|+||||+|+++|.+++++|+.+++.+ +++|++|||||+|||+||+++|+++||
T Consensus 171 ~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~aGa 249 (423)
T 3ivs_A 171 SEDSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVV-SCDIECHFHNDTGMAIANAYCALEAGA 249 (423)
T ss_dssp EESGGGSCHHHHHHHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHC-SSEEEEEEBCTTSCHHHHHHHHHHTTC
T ss_pred EccCcCCCHHHHHHHHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhhc-CCeEEEEECCCCchHHHHHHHHHHhCC
Confidence 34444555555555555443 78 8999999999999999999999999987 799999999999999999999999999
Q ss_pred CEEeeccCCCCCCCCCCcHHHHHHHHhcC---CCCCCCCHHHHHHHHHHHHHHHhccC----CCCccC------------
Q psy3968 520 DVVDVAVDSMSGMTSQPSMGAVVASLQGS---DIDTGLDLKDISAYSAYWEQTRQLYA----PFECTT------------ 580 (1080)
Q Consensus 520 ~~vd~s~~glg~~~g~~~~e~~v~~l~~~---g~~~~~d~~~l~~~~~~~~~~~~~~~----~~~~~~------------ 580 (1080)
++||+|++|||+|+||+++|+++++|... ++++++|++.|.++++|++++.+... |+.+..
T Consensus 250 ~~vd~ti~GlGERaGNa~Le~vv~~L~~~~~~~~~~~idl~~L~~is~~v~~~~~~~v~~~kpivG~~aFah~sGiH~dg 329 (423)
T 3ivs_A 250 THIDTSILGIGERNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQIPFNNYITGMCAFTHKAGIHAKA 329 (423)
T ss_dssp CEEEEBGGGCSSTTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHTTCCCCTTCTTTSTTTTEEECSGGGGG
T ss_pred CEEEEecccccCcccchhHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhHhHHHhhcchhHHH
Confidence 99999999999999999999999998643 67899999999999999999855422 222211
Q ss_pred -------------CCCcCCcceec-cCCCCchhhcHHHHHHHCCCCcc
Q psy3968 581 -------------TMKSGNADVYL-NEIPGGQYTNLQFQAYSLGLGEF 614 (1080)
Q Consensus 581 -------------~~~~~~~~v~~-~~iPGG~~snl~~ql~~~g~~~~ 614 (1080)
..+|...+++. +...| .+++...|+++|+.-.
T Consensus 330 ilk~~~tYe~~~Pe~vG~~r~~~v~~k~SG--~~~i~~~l~~lG~~l~ 375 (423)
T 3ivs_A 330 ILANPSTYEILKPEDFGMSRYVHVGSRLTG--WNAIKSRAEQLNLHLT 375 (423)
T ss_dssp SSSCGGGCCSSCGGGGTCCCCEEESSCCCT--HHHHHHHHHHTTCCC-
T ss_pred HhCCccccCCcCHHHcCCcceEEeccccCC--HHHHHHHHHHcCCCCC
Confidence 34566666665 57777 7899999999997643
No 68
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.91 E-value=2.1e-24 Score=238.56 Aligned_cols=229 Identities=22% Similarity=0.310 Sum_probs=170.7
Q ss_pred cCCC-EEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy3968 37 NDVD-AIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY 115 (1080)
Q Consensus 37 ~~iD-aVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~i 115 (1080)
.++| ++++.++.. +...++..++..|++++ ++++++..++||..++++++++|||+|++ ..+.+.+++.++++++
T Consensus 47 ~~~d~~~~~~~~~~-~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~p~~--~~~~~~~~~~~~~~~~ 122 (280)
T 1uc8_A 47 EGVTVALERCVSQS-RGLAAARYLTALGIPVV-NRPEVIEACGDKWATSVALAKAGLPQPKT--ALATDREEALRLMEAF 122 (280)
T ss_dssp TTCCEEEECCSSHH-HHHHHHHHHHHTTCCEE-SCHHHHHHHHBHHHHHHHHHHTTCCCCCE--EEESSHHHHHHHHHHH
T ss_pred CCCCEEEECCccch-hhHHHHHHHHHCCCcee-CCHHHHHHhCCHHHHHHHHHHcCcCCCCe--EeeCCHHHHHHHHHHh
Confidence 4789 788876632 55678888999999998 46999999999999999999999999998 4688999999999999
Q ss_pred CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CcEEEEEEEEecCCcEEEEEeeecc
Q psy3968 116 GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIER-PRHIEVQLLGDKAGNVVHLYERDCS 194 (1080)
Q Consensus 116 gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G-~~ei~v~vl~d~~G~vv~l~~r~~~ 194 (1080)
+||+|+||..|+||+|++++++.+++.++++.+.. ...+.+.++++|+||+| ..++++.++ +|+++....+...
T Consensus 123 ~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~--~~~~~~~~~lvqe~i~~~~~e~~v~v~---~~~~~~~~~~~~~ 197 (280)
T 1uc8_A 123 GYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEV--LGGFQHQLFYIQEYVEKPGRDIRVFVV---GERAIAAIYRRSA 197 (280)
T ss_dssp CSSEEEECSBCCBCSHHHHHHHHHC--------------CTTTTCEEEEECCCCSSCCEEEEEE---TTEEEEEEEC---
T ss_pred CCCEEEEECCCCCcccceecccccccchhhhhHhh--hcccCCCcEEEEeccCCCCceEEEEEE---CCEEEEEEEEecC
Confidence 99999999999999999999999999988776511 11123568999999997 466776665 2345443333110
Q ss_pred -ccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHH
Q psy3968 195 -VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLV 273 (1080)
Q Consensus 195 -~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~ 273 (1080)
...+........|. .+++ ++.+.+.++++++|+ |.+++||+++++| +||+|+|||+++.. +..++|+|+.
T Consensus 198 ~~~~~~~~g~~~~p~-~l~~----~~~~~~~~~~~~lg~-g~~~vD~~~~~~g-~~~iEiN~r~g~~~--~~~~~G~~~~ 268 (280)
T 1uc8_A 198 HWITNTARGGQAENC-PLTE----EVARLSVKAAEAVGG-GVVAVDLFESERG-LLVNEVNHTMEFKN--SVHTTGVDIP 268 (280)
T ss_dssp -----------CEEC-CCCH----HHHHHHHHHHHHTTC-SEEEEEEEEETTE-EEEEEEETTCCCTT--HHHHHCCCHH
T ss_pred CccccccCCccccCC-CCCH----HHHHHHHHHHHHhCC-CeEEEEEEEeCCC-eEEEEEeCCCCccc--hheeeccCHH
Confidence 00000111123354 3553 789999999999999 9999999999887 99999999997654 4678999999
Q ss_pred HHHHHHHcCC
Q psy3968 274 QSQIRVAEGM 283 (1080)
Q Consensus 274 ~~~l~~alG~ 283 (1080)
+.+++.++|.
T Consensus 269 ~~~~~~~~~~ 278 (280)
T 1uc8_A 269 GEILKYAWSL 278 (280)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999999886
No 69
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Probab=99.91 E-value=2e-25 Score=266.30 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=144.9
Q ss_pred ccEEccc----ccCHHHHHHhcccccccCCceeeeeecCCccccccCCcchHHHHHHHhhhee-------e---ecCCCC
Q psy3968 377 EFRVRGV----KTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTV-------L---VNGPST 442 (1080)
Q Consensus 377 ~i~I~Gv----~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~~~~dra~~L~~yla~V-------~---Vng~~~ 442 (1080)
...|.++ +.+|+...+.+.... ...+|+ |+..++.+.+.+...++.+.+..+...+ . --+++|
T Consensus 137 ~~~i~aL~r~~~~did~a~eal~~a~--~~~Vhi-f~stSd~h~~~~l~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v 213 (644)
T 3hq1_A 137 DVTIQVLTQCRPELIERTFQACSGAP--RAIVHF-YNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRF 213 (644)
T ss_dssp TCEEEEEEESCHHHHHHHHHHHTTCS--EEEEEE-EEECCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEE
T ss_pred CeEEEEEecCCHhhHHHHHHHHhcCC--CCEEEE-EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhccCceEEE
Confidence 4556555 222333333333333 346777 8888777776655555554333221111 0 012356
Q ss_pred CCCC----CCCCCCCCCCCCCCC----CC-C---eeeeccccCccChHHHHHHHHHHHHHCC---CCceEEeeCCCCchh
Q psy3968 443 PLAT----PLLPAEVTPPVPEIP----LG-K---LINTFDMAGLLKPRAAKLLIGAIREKHP---DIPIHIHTHDTSGAG 507 (1080)
Q Consensus 443 p~~~----~~~~~~~~~~~~~~~----~G-~---~i~i~Dt~G~~~P~~~~~lv~~l~~~~p---~~~i~~H~H~t~Gla 507 (1080)
+|++ +.+++++..++..+. .| + .|+|+||+|+++|..++++|+.|++++| +++|++|||||+|||
T Consensus 214 ~fs~Edasrtd~dfl~ev~~aa~eaG~~Gad~~~~I~LpDTvG~~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlA 293 (644)
T 3hq1_A 214 EYSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTA 293 (644)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHHHCCCSSSCEEEEEEESSCCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCH
T ss_pred EEcCcccCCCCHHHHHHHHHHHHHhcCCCCCceeEEEecCCCcccCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcH
Confidence 6655 466676666665433 35 3 7999999999999999999999999997 589999999999999
Q ss_pred HHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Q psy3968 508 VASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTR 570 (1080)
Q Consensus 508 ~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 570 (1080)
+||+++|++|||++||+|++|+|+|+||++||+|+++|+.+|++|++|+++|.+++++++++.
T Consensus 294 vANslaAv~AGA~~Vdgti~G~GERaGNa~LE~lv~~L~~~Gi~tgidl~~L~~is~~ve~~~ 356 (644)
T 3hq1_A 294 VAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCN 356 (644)
T ss_dssp HHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEecCCCCCccccCccHHHHHHHHHhcccCCccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998753
No 70
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=99.91 E-value=3.9e-25 Score=247.57 Aligned_cols=137 Identities=23% Similarity=0.352 Sum_probs=127.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHH
Q psy3968 439 GPSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAE 516 (1080)
Q Consensus 439 g~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~ 516 (1080)
.|+||++++.+++++..++..+. +| ++|+|+||+|+++|.+++++++++++.+|+++|++|+|||+|||+||+++|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~ 223 (298)
T 2cw6_A 144 ALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQ 223 (298)
T ss_dssp TTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHH
T ss_pred EeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHH
Confidence 37899999988888877776555 88 89999999999999999999999999998899999999999999999999999
Q ss_pred cCCCEEeeccCCCCC------CCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC
Q psy3968 517 AGADVVDVAVDSMSG------MTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAP 575 (1080)
Q Consensus 517 aG~~~vd~s~~glg~------~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~ 575 (1080)
+||++||+|++|||| ++||+++|+++++|+.+|++|++|+++|.+++++++++.+...|
T Consensus 224 aGa~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~ 288 (298)
T 2cw6_A 224 MGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTS 288 (298)
T ss_dssp TTCCEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHHHHHTTCCCC
T ss_pred hCCCEEEeecccccCCCCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCc
Confidence 999999999999999 79999999999999999999999999999999999998765443
No 71
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=99.90 E-value=6.8e-25 Score=245.91 Aligned_cols=135 Identities=24% Similarity=0.279 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|+||++++.+++++..++..+. +| ++|+|+||.|+++|..++++++.+++.+|++||++|+|||+|||+||+++|+++
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~a 227 (302)
T 2ftp_A 148 LGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLE 227 (302)
T ss_dssp TCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHT
T ss_pred eeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHh
Confidence 6899988888888777776554 88 899999999999999999999999999988999999999999999999999999
Q ss_pred CCCEEeeccCCCCC------CCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC
Q psy3968 518 GADVVDVAVDSMSG------MTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYA 574 (1080)
Q Consensus 518 G~~~vd~s~~glg~------~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~ 574 (1080)
||++||+|++|||| ++||++||+++++|+.+|++|++|+++|.+++++++++.+...
T Consensus 228 Ga~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~ 290 (302)
T 2ftp_A 228 GIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSN 290 (302)
T ss_dssp TCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999 8999999999999999999999999999999999999876544
No 72
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=99.90 E-value=8.2e-25 Score=244.93 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=125.0
Q ss_pred CCCCCCCCCCC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCC
Q psy3968 453 VTPPVPEIPLG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSG 531 (1080)
Q Consensus 453 ~~~~~~~~~~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~ 531 (1080)
+...+.++.+| ++|+|+||+|+++|.+++++|+++++.+ ++||++|+|||+|||+||+++|+++||++||+|++|||+
T Consensus 146 ~l~~~~~~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~ 224 (320)
T 3dxi_A 146 FLSKLKAIDKIADLFCMVDSFGGITPKEVKNLLKEVRKYT-HVPVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMGR 224 (320)
T ss_dssp SGGGGGGGTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHC-CSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS
T ss_pred HHHHHHHhhCCCCEEEECcccCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccCC
Confidence 33333445579 8999999999999999999999999999 699999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC-CCC---ccCCCCcCCcceeccCCCCchhh
Q psy3968 532 MTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYA-PFE---CTTTMKSGNADVYLNEIPGGQYT 600 (1080)
Q Consensus 532 ~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~v~~~~iPGG~~s 600 (1080)
|+||++||+++++|+. ++++++|++.|.++++++++++++|. ++. ..+...+..++...+.+++|+||
T Consensus 225 ~~GN~~~E~lv~~L~~-~~~~~~dl~~l~~~~~~~~~~~~~~~~g~~~~~~~sg~~g~H~~~i~~~~~~~~~s 296 (320)
T 3dxi_A 225 GAGNLKMELLLTYLNK-HHGLNVDFNVLGNIITTFTPLLEKYQWGTNLPYMLSGANNIPQKEVMDWVTNRVYS 296 (320)
T ss_dssp TTCBCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHTTCCHHHHHHHHC---CC
T ss_pred cccchhHHHHHHHHHh-ccCCCcCHHHHHHHHHHHHHHHHhcCCCCchhhHHHhccCCCHHHHHHHHhcCCCC
Confidence 9999999999999998 67789999999999999999987754 211 11234566788889999999998
No 73
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.90 E-value=5e-23 Score=231.52 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=164.2
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEeC-CCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCC
Q psy3968 22 EAYLNIPEIIRVAKENDVDAIHPG-YGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPG 100 (1080)
Q Consensus 22 ~~yld~e~Ii~~a~~~~iDaVipg-~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~ 100 (1080)
++|. +.+.++++ ++|.+++. ++.......+.+.++..| +++|+++++++.++||..+++++++ |||+|++..
T Consensus 57 ~df~--~~l~~~~~--~~D~~~~i~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~~- 129 (305)
T 3df7_A 57 VDSM--DSMEKYLE--KSDAFLIIAPEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTSL- 129 (305)
T ss_dssp BCCG--GGHHHHHT--TCSEEEEECCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEES-
T ss_pred cCHH--HHHHHHHH--hcCEEEEEccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEec-
Confidence 4563 47777776 45665543 443332344555555566 7999999999999999999999999 999999841
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEe
Q psy3968 101 PITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD 180 (1080)
Q Consensus 101 ~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d 180 (1080)
.+++||+|+||..|+||+|++++++ .+..+++|+||+| +|+++.++.+
T Consensus 130 ------------~~~~~P~vvKP~~g~gs~Gv~~v~~-------------------~~~~~lvEe~I~G-~e~sv~v~~g 177 (305)
T 3df7_A 130 ------------RPLDCKFIIKPRTACAGEGIGFSDE-------------------VPDGHIAQEFIEG-INLSVSLAVG 177 (305)
T ss_dssp ------------SCCSSSEEEEESSCC----CBCCSS-------------------CCTTEEEEECCCS-EEEEEEEEES
T ss_pred ------------ccCCCCEEEEeCCCCCCCCEEEEec-------------------CCCCEEEEeccCC-cEEEEEEEeC
Confidence 2579999999999999999999998 2568999999999 8999999974
Q ss_pred cCCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEcCCCCEEEEEEeccCCC
Q psy3968 181 KAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-GYSNAGTVEFLCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 181 ~~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEfivd~dG~~~~iEvNpR~~g 259 (1080)
+ .+..+.... .............|+ .++++..+++.+++.++++++ |++|.+++||+++ |++||+|||||+++
T Consensus 178 -~-~~~~~~~~~-~~~~~~~~~g~~~p~-~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~--~~~~viEiNpR~~~ 251 (305)
T 3df7_A 178 -E-DVKCLSVNE-QIINNFRYAGAVVPA-RISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS--DQPYVIEINARLTT 251 (305)
T ss_dssp -S-SEEEEEEEE-EEEETTEEEEEEESC-CCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES--SSEEEEEEESSCCG
T ss_pred -C-eEEEEEEee-EeccCceeccccccC-CCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC--CCEEEEEEcCCCCC
Confidence 2 444333211 111112334557787 589999999999999999999 9999999999996 56999999999999
Q ss_pred CccchhcccCCCHHHHHHHH
Q psy3968 260 EHTVTEEITGVDLVQSQIRV 279 (1080)
Q Consensus 260 ~~~~~e~~tGvdl~~~~l~~ 279 (1080)
+...+..++|+|+.++++++
T Consensus 252 ~~~~~~~~~G~~~~~~~~~~ 271 (305)
T 3df7_A 252 PVVAFSRAYGASVADLLAGG 271 (305)
T ss_dssp GGGGHHHHHSCCHHHHHTTC
T ss_pred CHHHHHHHHCCCHHHHHHhc
Confidence 87777888999999999997
No 74
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=99.90 E-value=6.6e-25 Score=256.71 Aligned_cols=183 Identities=41% Similarity=0.720 Sum_probs=153.4
Q ss_pred cccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCcccccc
Q psy3968 803 QNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIP 882 (1080)
Q Consensus 803 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~vp 882 (1080)
+.++|.|+|||+|||+||+.++||++.++.++++.+++. |+++||+|++++|++++|++.+++|+++-.+......+.
T Consensus 4 ~~~~V~I~DtTLRDG~Qs~~~~~~~~~dkl~Ia~~L~~~--Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~ 81 (464)
T 2nx9_A 4 AIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQI--GYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTP 81 (464)
T ss_dssp CCCCCEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHTS--CCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSC
T ss_pred CCCCcEEEECCccccccCCCCcCCCHHHHHHHHHHHHHc--CCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCe
Confidence 356799999999999999999999999999998888875 899999999999999999999998875321111000111
Q ss_pred ccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEE
Q psy3968 883 FQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVV 962 (1080)
Q Consensus 883 ~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v 962 (1080)
++
T Consensus 82 l~------------------------------------------------------------------------------ 83 (464)
T 2nx9_A 82 LQ------------------------------------------------------------------------------ 83 (464)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EE------------------------------------------------------------------------------
Confidence 11
Q ss_pred eEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCC
Q psy3968 963 KSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPS 1042 (1080)
Q Consensus 963 ~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1080)
..++.-+++.+-.|++++++.+.+.|.+.|+|..+||+++||++||+.+++++|+.|++++++|||+.+
T Consensus 84 ------~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~----- 152 (464)
T 2nx9_A 84 ------MLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTS----- 152 (464)
T ss_dssp ------EEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCC-----
T ss_pred ------EEeccccccCcccccchhhHHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeC-----
Confidence 112222333344688999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1043 KKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+.||++||++++++++++|||+||||| +|+++|.
T Consensus 153 -~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~ 187 (464)
T 2nx9_A 153 -PVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPY 187 (464)
T ss_dssp -TTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHH
T ss_pred -CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHH
Confidence 469999999999999999999999999 9999995
No 75
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=99.89 E-value=1.4e-24 Score=256.92 Aligned_cols=184 Identities=41% Similarity=0.681 Sum_probs=154.4
Q ss_pred hcccceeeeecccccccccccceecccccccccchhhhhccCccceeeccCCccchheecccccCCeEEEEEECCccccc
Q psy3968 802 RQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNI 881 (1080)
Q Consensus 802 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~G~~~~~~~~r~~~~~~~~~~~~v~g~~~~v 881 (1080)
++.++|.|+|||+|||+||++++||++.++.++++.|++. |+++||+|++++|++++|++.+++|+++-.+......+
T Consensus 20 ~~~~~V~I~DtTLRDG~Qs~~~~~~~tedKl~Ia~~L~~~--Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~ 97 (539)
T 1rqb_A 20 SEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAA--GYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNS 97 (539)
T ss_dssp CCSEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHT--TCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTS
T ss_pred CCCCceEEEECCCCchhccCCCCCCCHHHHHHHHHHHHHc--CCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCC
Confidence 4567899999999999999999999999999998888875 89999999999999999999999887532111100111
Q ss_pred cccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeE
Q psy3968 882 PFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGV 961 (1080)
Q Consensus 882 p~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~ 961 (1080)
.+++
T Consensus 98 ~l~~---------------------------------------------------------------------------- 101 (539)
T 1rqb_A 98 RLQM---------------------------------------------------------------------------- 101 (539)
T ss_dssp CEEE----------------------------------------------------------------------------
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 1111
Q ss_pred EeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCC
Q psy3968 962 VKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDP 1041 (1080)
Q Consensus 962 v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1080)
.++.-+++.+-+|++++++.+.+.+.+.|+|+.+||+++||++||+.+++++|+.|++++++|||+.+
T Consensus 102 --------L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~---- 169 (539)
T 1rqb_A 102 --------LLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTIS---- 169 (539)
T ss_dssp --------EECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCS----
T ss_pred --------EeccccccCcccCcccccHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeC----
Confidence 12222333444678999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1042 SKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+.||++||+++++++.++|||+||||| +|+++|.
T Consensus 170 --~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~ 204 (539)
T 1rqb_A 170 --PVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQ 204 (539)
T ss_dssp --TTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHH
Confidence 479999999999999999999999999 9999995
No 76
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=99.89 E-value=2e-24 Score=241.66 Aligned_cols=139 Identities=25% Similarity=0.354 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc
Q psy3968 440 PSTPLATPLLPAEVTPPVPEIP-LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA 517 (1080)
Q Consensus 440 ~~~p~~~~~~~~~~~~~~~~~~-~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a 517 (1080)
|+||++++.+++++..++..+. +| ++|+|+||.|.++|.+++++++++++.+|++||++|+|||+|||+||+++|+++
T Consensus 144 ~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~a 223 (295)
T 1ydn_A 144 VECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEK 223 (295)
T ss_dssp SEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHH
T ss_pred ecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHh
Confidence 5788888888887777776544 78 899999999999999999999999999977999999999999999999999999
Q ss_pred CCCEEeeccCCCCC------CCCCCcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCCCc
Q psy3968 518 GADVVDVAVDSMSG------MTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFEC 578 (1080)
Q Consensus 518 G~~~vd~s~~glg~------~~g~~~~e~~v~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~ 578 (1080)
||++||+|++|||| ++||+++|+++++|+.+|++|++|+++|.++++|++++++.|.+++.
T Consensus 224 G~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~~~~~~ 290 (295)
T 1ydn_A 224 GLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQALRQDKAALEH 290 (295)
T ss_dssp TCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCC------
T ss_pred CCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCccc
Confidence 99999999999999 79999999999999999999999999999999999999999999875
No 77
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.87 E-value=6.8e-21 Score=216.16 Aligned_cols=204 Identities=14% Similarity=0.151 Sum_probs=146.9
Q ss_pred CCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCC
Q psy3968 38 DVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGL 117 (1080)
Q Consensus 38 ~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igf 117 (1080)
.+|+|+|..++.. ......++..|++++ ++++++..+.||..++++|+++|||+|++ +.+.++ ++|
T Consensus 62 ~~d~i~~~~e~~~--~~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~----~~~~~~-------l~~ 127 (334)
T 2r85_A 62 LNAVVVPTGSFVA--HLGIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV----YEDPDD-------IEK 127 (334)
T ss_dssp TTEEECCCTTHHH--HHCHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB----CSCGGG-------CCS
T ss_pred cCCEEEECcchhh--hhHHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc----cCChHH-------cCC
Confidence 3588887644321 222345677899977 56799999999999999999999999997 345443 579
Q ss_pred cEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhc-CCCcEEEeeccCCCcEEEEEEEEecCCc-EEEEE-eeecc
Q psy3968 118 PVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAF-GNGAMFIEKFIERPRHIEVQLLGDKAGN-VVHLY-ERDCS 194 (1080)
Q Consensus 118 PvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~-g~~~vlVEeyI~G~~ei~v~vl~d~~G~-vv~l~-~r~~~ 194 (1080)
|+|+||..|+||+||++|++.+|+..+++.+.... .+ ....+++|+||+| .++++.++.+..+. +-.+. ...+.
T Consensus 128 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~lvee~i~G-~e~~~~~~~~~~~~~v~~~~~~g~~~ 204 (334)
T 2r85_A 128 PVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIK--RKEDLKNIQIQEYVLG-VPVYPHYFYSKVREELELMSIDRRYE 204 (334)
T ss_dssp CEEEEECC----TTCEEESSHHHHHHHHHHHHCCC--SGGGCCSEEEEECCCC-EEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhc--ccCCCCcEEEEeccCC-ceeEEEEeecCcCceeeeeeeccEEE
Confidence 99999999999999999999999999887764310 01 1368999999999 78887666552222 11111 10000
Q ss_pred cc------------------ccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-----CCcceEEEEEEEcCCCCEEEE
Q psy3968 195 VQ------------------RRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-----GYSNAGTVEFLCDESGQFYFI 251 (1080)
Q Consensus 195 ~~------------------~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-----g~~G~~~vEfivd~dG~~~~i 251 (1080)
.+ ......... |+ .++++..+++.+++.+++++| ++.|.+++||+++++|++||+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-p~-~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~~g~~~vi 282 (334)
T 2r85_A 205 SNVDAIGRIPAKDQLEFDMDITYTVIGNI-PI-VLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVF 282 (334)
T ss_dssp EEGGGGGGSCHHHHTTSCCCCCEEEEEEE-EC-CCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECTTSCEEEE
T ss_pred eccCcccccccccccccccCCceeeeCCC-Cc-ccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECCCCCEEEE
Confidence 00 001112222 76 488888899999999999999 899999999999988889999
Q ss_pred EEeccCCCC
Q psy3968 252 EVNARLQVE 260 (1080)
Q Consensus 252 EvNpR~~g~ 260 (1080)
|||||++++
T Consensus 283 EiN~R~g~~ 291 (334)
T 2r85_A 283 EISARIVAG 291 (334)
T ss_dssp EEECSCCGG
T ss_pred EEeCCcCCC
Confidence 999999995
No 78
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.85 E-value=1e-20 Score=216.60 Aligned_cols=234 Identities=14% Similarity=0.201 Sum_probs=163.0
Q ss_pred chhccceEEEccCCCCCCCCCCCH--HHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHH
Q psy3968 4 HRQKADESYLVGKGLPPVEAYLNI--PEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKV 81 (1080)
Q Consensus 4 ~~~~ADea~~v~~~~~~~~~yld~--e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~ 81 (1080)
....||+.+.+ +.|.|+ +++++.+++.+ |.|.|-.. +.....+.....+.|++++| +..++++..||.
T Consensus 57 ~~~~ad~~~~~-------d~~~d~~~~~~l~~l~~~~-~vV~pe~~-~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~ 126 (361)
T 2r7k_A 57 RFKVADKFIYV-------DNFSDIKNEEIQEKLRELN-SIVVPHGS-FIAYCGLDNVENSFLVPMFG-NRRILRWESERS 126 (361)
T ss_dssp HTTCCSEEEEC-------SSGGGGGSHHHHHHHHHTT-EEECCBHH-HHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHH
T ss_pred ccccCceEEEC-------CCcccccHHHHHHHHHHcC-CEEEeCch-hhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHH
Confidence 45678998887 235553 56666666554 54443211 11111222323379999987 889999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCC---
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGN--- 158 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~--- 158 (1080)
.+|++|+++|||+|++ +++.+++ +||+||||..+++|+|+++++|.+|+.++++.+... ..++.
T Consensus 127 ~~k~~l~~~GIptp~~----~~~~~e~-------~~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~--~~~~~~~~ 193 (361)
T 2r7k_A 127 LEGKLLREAGLRVPKK----YESPEDI-------DGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKR--GILTDEDI 193 (361)
T ss_dssp HHHHHHHHTTCCCCCE----ESSGGGC-------CSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHT--TSCCHHHH
T ss_pred HHHHHHHHcCcCCCCE----eCCHHHc-------CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc--cccccCCC
Confidence 9999999999999976 4555543 699999999999999999999999999998877532 11211
Q ss_pred CcEEEeeccCCCcEEEEEEEEec-CCc--EEEEEeeecc-------c----------cccccEEEEEcCCCCCCHHHHHH
Q psy3968 159 GAMFIEKFIERPRHIEVQLLGDK-AGN--VVHLYERDCS-------V----------QRRHQKVVEIAPAPHLDINVRNK 218 (1080)
Q Consensus 159 ~~vlVEeyI~G~~ei~v~vl~d~-~G~--vv~l~~r~~~-------~----------~~~~~~~~~~~Pa~~l~~~~~~~ 218 (1080)
..++|||||+| .++++..+..- +++ ++.+..|-.. . ...+....+ .|+ .+++++.++
T Consensus 194 ~~viIEEfl~G-~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~~~~~~~~p~~v~~G~-~Pa-~l~~~~~~~ 270 (361)
T 2r7k_A 194 ANAHIEEYVVG-TNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKDQLEMNINPSYVITGN-IPV-VIRESLLPQ 270 (361)
T ss_dssp HHCEEEECCCS-EEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHHHHTCCCCCCEEEEEE-EEC-CCCGGGHHH
T ss_pred CeEEEEeccce-EEeeEEEEecccCCeeEEEEecceEEeecccceecchhhhhcccCCCceEEecC-cCC-cCCHHHHHH
Confidence 36999999999 67775555432 222 2222222100 0 001222233 287 488899999
Q ss_pred HHHHHHHHHHHc------CCcceEEEEEEEcCCCCEEEEEEeccCCCCccc
Q psy3968 219 MTDLAVKLAKHV------GYSNAGTVEFLCDESGQFYFIEVNARLQVEHTV 263 (1080)
Q Consensus 219 l~~~a~~i~~al------g~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~ 263 (1080)
+.+++.++++++ ++.|++++||+++++|+++++|+|||++|...+
T Consensus 271 a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~dg~i~V~EIapR~gGg~~~ 321 (361)
T 2r7k_A 271 VFEMGDKLVAKAKELVPPGMIGPFCLQSLCNENLELVVFEMSARVDGGTNS 321 (361)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCEEEEEEEEECTTSCEEEEEEESSBCGGGGG
T ss_pred HHHHHHHHHHHHHhhccCCccceEEEEEEEcCCCCEEEEEEcCCCCCCccc
Confidence 999999999999 899999999999988889999999999997554
No 79
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.78 E-value=3.9e-20 Score=207.88 Aligned_cols=214 Identities=16% Similarity=0.148 Sum_probs=142.3
Q ss_pred chhccceEEEccCCCCCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHH
Q psy3968 4 HRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAA 83 (1080)
Q Consensus 4 ~~~~ADea~~v~~~~~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~ 83 (1080)
....||+.+.++ .|.| +++ ..|.|.|..++.. ....+.+++.|++++ |+++++....||...
T Consensus 41 a~~~ad~~~~~~-------~~~d------l~~--~~dvitpe~e~v~--~~~l~~le~~~~p~~-p~~~~l~~~~dr~~~ 102 (320)
T 2pbz_A 41 SLPIVDDLVVAE-------EMTS------ILN--DDGIVVPHGSFVA--YLGIEAIEKAKARFF-GNRRFLKWETTFELQ 102 (320)
T ss_dssp TCTTCSEEEECS-------CSCC------TTC--CSSBCCCBTTHHH--HSCHHHHHTCCSCCB-SCSSGGGGGSCHHHH
T ss_pred hhhcCCeEEECC-------cHHH------HHh--cCCEEEecccchh--HHHHHHHHHcCCCcC-CCHHHHHHHHhHHHH
Confidence 567899999872 3555 222 3477775544322 112334678899977 678999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEE
Q psy3968 84 RQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFI 163 (1080)
Q Consensus 84 r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlV 163 (1080)
+++|+++|||+|+++. .+++ +++||+||||..|+||+|+++++| +|+..+++.+ . .+++|
T Consensus 103 ~~~l~~~Gip~P~~~~-----~ee~-----~i~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~--------~-~~~Ii 162 (320)
T 2pbz_A 103 DKALEGAGIPRVEVVE-----PEDA-----KPDELYFVRIEGPRGGSGHFIVEG-SELEERLSTL--------E-EPYRV 162 (320)
T ss_dssp HHHHHHHTCCBCCBCC-----SCCC-----CSSCCEEEECC------------C-EECSCCCC-------------CCEE
T ss_pred HHHHHHCCcCCCCeeC-----HhHc-----CcCCcEEEEECCCCCCCCEEEECh-HHHHHHHHhc--------C-CCEEE
Confidence 9999999999999841 2222 589999999999999999999999 9997765443 1 36999
Q ss_pred eeccCCCcEEEEEEEEe-cCCcEEEEEeeeccccccc-----------cEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-
Q psy3968 164 EKFIERPRHIEVQLLGD-KAGNVVHLYERDCSVQRRH-----------QKVVEIAPAPHLDINVRNKMTDLAVKLAKHV- 230 (1080)
Q Consensus 164 EeyI~G~~ei~v~vl~d-~~G~vv~l~~r~~~~~~~~-----------~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al- 230 (1080)
||||+| .++++.++.+ -.|++..++.+........ ....+. |+ .+++++.+++.+.+.++++++
T Consensus 163 EEfI~g-~~~~~~~f~~~~~g~~e~~~~~~r~e~~~g~~~~p~~~~~~~~~G~~-P~-~~~~~~~~~a~~~a~~i~~~L~ 239 (320)
T 2pbz_A 163 ERFIPG-VYLYVHFFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNR-AI-ALRESLLPQLYDYGLAFVRTMR 239 (320)
T ss_dssp EECCCS-CEEEEEEEEETTTTEEEEEEEEEEEETTCSSSSSCCSCCCCCEEEEE-EC-EECGGGHHHHHHHHHHHHHHHH
T ss_pred Eeeece-EecceeEEeccccCceeEEEecceEEEECCeeecccCCCceeeecCC-CC-ccCHHHHHHHHHHHHHHHHHHH
Confidence 999999 4556556654 3445444432211100111 112222 76 477888899999999999999
Q ss_pred -----CCcceEEEEEEEcCCCCEEEEEEeccCCCC
Q psy3968 231 -----GYSNAGTVEFLCDESGQFYFIEVNARLQVE 260 (1080)
Q Consensus 231 -----g~~G~~~vEfivd~dG~~~~iEvNpR~~g~ 260 (1080)
|+.|++++| ++.+|++|++|||||++|.
T Consensus 240 ~l~~~g~~G~~~vE--~~~dg~~~v~EIapR~~GG 272 (320)
T 2pbz_A 240 ELEPPGVIGPFALH--FAYDGSFKAIGIASRIDGG 272 (320)
T ss_dssp HHSTTCCCSEEEEE--EECSSSCEEEEEESSBCSG
T ss_pred hhccCCceeeEEEE--EcCCCcEEEEEecCCCCCC
Confidence 999999999 5677889999999999885
No 80
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.77 E-value=2e-19 Score=222.44 Aligned_cols=240 Identities=16% Similarity=0.176 Sum_probs=179.0
Q ss_pred CCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHH-------cCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCC
Q psy3968 25 LNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLD-------AGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPG 97 (1080)
Q Consensus 25 ld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~-------~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~ 97 (1080)
++.+.|+++|++.++|+++.+.+ ..+++.+.. .|+...|++..++..++||..+|++|+++|||+|++
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg~e-----~~l~~lg~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~ 507 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILDEN-----DQFLCLKYGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQS 507 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETT-----TTEEEEEETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCE
T ss_pred CCHHHHHHHHHHhCCCEEEECCC-----HHHHHhcccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCE
Confidence 45689999999999999987653 112111222 245455678899999999999999999999999998
Q ss_pred CCCCCCCHHHHHHHH-HHhCCcEEEEeCCCCCCcCeEEE----CCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcE
Q psy3968 98 TPGPITTTEEAMEFC-LKYGLPVIFKAAYGGGGRGMRVV----RKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRH 172 (1080)
Q Consensus 98 ~~~~v~s~ee~~~~~-~~igfPvVVKP~~g~Gg~GV~iv----~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~e 172 (1080)
..+.+.+++.+++ +.+|||+||||..|++|+||+++ ++.+++.++++.+... +..++||+||+| +|
T Consensus 508 --~~~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~------~~~vlVEefI~G-~E 578 (757)
T 3ln7_A 508 --VEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE------DKEVMVEDYLVG-TE 578 (757)
T ss_dssp --EEESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH------CSSEEEEECCCS-EE
T ss_pred --EEECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc------CCcEEEEEcCCC-cE
Confidence 4688999987776 77999999999999999999999 8999999999877642 568999999999 99
Q ss_pred EEEEEEEecCCcEEEEEeeeccc-c------------------cc---cc------------------------------
Q psy3968 173 IEVQLLGDKAGNVVHLYERDCSV-Q------------------RR---HQ------------------------------ 200 (1080)
Q Consensus 173 i~v~vl~d~~G~vv~l~~r~~~~-~------------------~~---~~------------------------------ 200 (1080)
++|.+++ |+++....|.-.. . ++ +.
T Consensus 579 i~v~Vlg---gkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~g~~~d~Vp~~G 655 (757)
T 3ln7_A 579 YRFFVLG---DETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQGLTIDSIPAKD 655 (757)
T ss_dssp EEEEEET---TEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHHTCCSSSCCCSS
T ss_pred EEEEEEC---CEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHcCCCccccCCCC
Confidence 9999984 4677665553210 0 00 00
Q ss_pred EEEEEc---------CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC--------CCCEEEEEEeccCCCC-cc
Q psy3968 201 KVVEIA---------PAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE--------SGQFYFIEVNARLQVE-HT 262 (1080)
Q Consensus 201 ~~~~~~---------Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~--------dG~~~~iEvNpR~~g~-~~ 262 (1080)
..+... -+..+++++.+++.+.|.++++++|+. ++.||++.+. .+.+.+||||++++-. |.
T Consensus 656 e~v~L~~~~Nls~GG~~~dvtd~i~p~~~~~a~~aa~~lGl~-~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~h~ 734 (757)
T 3ln7_A 656 QLVQLRANSNISTGGDSIDMTDEMHESYKQLAVGITKAMGAA-VCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMHI 734 (757)
T ss_dssp CEEECCSSCCGGGTCCEEECTTTSCHHHHHHHHHHHHHHTCS-EEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHHHH
T ss_pred CEEEeecccccccCccceeccccCCHHHHHHHHHHHHHhCCC-EEEEEEEecCccccccccCCCeEEEEEcCCcchhhhh
Confidence 000000 001233455678899999999999996 6679999872 3468999999999753 33
Q ss_pred chhcccCCCHHHHHHHHHcC
Q psy3968 263 VTEEITGVDLVQSQIRVAEG 282 (1080)
Q Consensus 263 ~~e~~tGvdl~~~~l~~alG 282 (1080)
.-...+|.|+...+++....
T Consensus 735 ~p~~g~~~~v~~~ii~~lfp 754 (757)
T 3ln7_A 735 FPYAGKSRRLTQNVIKMLFP 754 (757)
T ss_dssp SCSSSCCCCCHHHHHHHHCT
T ss_pred ccccCCCCchHHHHHHHhcC
Confidence 22346899999999988754
No 81
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.74 E-value=1.2e-17 Score=187.37 Aligned_cols=222 Identities=14% Similarity=0.078 Sum_probs=154.2
Q ss_pred cCCCEEEeCCCccc--cc---HHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q psy3968 37 NDVDAIHPGYGFLS--ER---SDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEF 111 (1080)
Q Consensus 37 ~~iDaVipg~g~ls--E~---~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~ 111 (1080)
.++|+|++..+... |. ..+.+.++..|++++ ++++++..+.||..++++++ |+|++ ..+++.+++.++
T Consensus 78 ~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t--~~~~~~~~~~~~ 150 (316)
T 1gsa_A 78 ADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPET--LVTRNKAQLKAF 150 (316)
T ss_dssp GGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCE--EEESCHHHHHHH
T ss_pred ccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCe--EEeCCHHHHHHH
Confidence 46899999754211 11 245666778899876 78999999999999999987 99998 457889999999
Q ss_pred HHHhCCcEEEEeCCCCCCcCeEEEC-CHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcEEE-EE
Q psy3968 112 CLKYGLPVIFKAAYGGGGRGMRVVR-KMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH-LY 189 (1080)
Q Consensus 112 ~~~igfPvVVKP~~g~Gg~GV~iv~-s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~vv~-l~ 189 (1080)
+++++ |+|+||..|+||+|+++++ +.+++..+++.+.. .+..++++|+||+|..++++.++.. +|+++. ..
T Consensus 151 ~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-----~~~~~~lvqe~i~~~~~~~~~v~~~-~g~~~~~~~ 223 (316)
T 1gsa_A 151 WEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-----HGTRYCMAQNYLPAIKDGDKRVLVV-DGEPVPYCL 223 (316)
T ss_dssp HHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-----TTTSCEEEEECCGGGGGCEEEEEEE-TTEECSEEE
T ss_pred HHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-----cCCceEEEecccCCCCCCCEEEEEE-CCEEeeeEE
Confidence 99999 9999999999999999998 88898887765321 2346899999999832344444433 345544 33
Q ss_pred eeecc---ccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHH---HcCCcceEEEEEEEcCCCCEEEEEEeccCCCCccc
Q psy3968 190 ERDCS---VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAK---HVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTV 263 (1080)
Q Consensus 190 ~r~~~---~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~---alg~~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~ 263 (1080)
.|... ...+........|. .+++ ++.+.+.++++ ++|+ +.+.+||+ |. ||+|||+|.+++...
T Consensus 224 ~r~~~~~~~~~~~~~gg~~~~~-~~~~----~~~~~a~~~~~~l~~~g~-~~~~vD~~----g~-~~iEvN~r~~~~~~~ 292 (316)
T 1gsa_A 224 ARIPQGGETRGNLAAGGRGEPR-PLTE----SDWKIARQIGPTLKEKGL-IFVGLDII----GD-RLTEINVTSPTCIRE 292 (316)
T ss_dssp EEECCSSCSCCCGGGTCEEEEE-ECCH----HHHHHHHHHHHHHHHTTC-CEEEEEEE----TT-EEEEEECSSCCCHHH
T ss_pred EEeCCCCCceeEEccCCccccC-CCCH----HHHHHHHHHHHHHHhCCC-cEEEEEec----CC-EEEEEcCCCCcchHH
Confidence 33211 00110001112343 2454 34445555554 4687 56779998 54 899999997555555
Q ss_pred hhcccCCCHHHHHHHHHcCC
Q psy3968 264 TEEITGVDLVQSQIRVAEGM 283 (1080)
Q Consensus 264 ~e~~tGvdl~~~~l~~alG~ 283 (1080)
++..+|+|+.+.+++...+.
T Consensus 293 ~~~~~g~~~~~~~~~~~~~~ 312 (316)
T 1gsa_A 293 IEAEFPVSITGMLMDAIEAR 312 (316)
T ss_dssp HHHHSSCCHHHHHHHHHHHH
T ss_pred HHHhhCcCHHHHHHHHHHHH
Confidence 66789999999999887654
No 82
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.73 E-value=3.9e-17 Score=184.77 Aligned_cols=201 Identities=18% Similarity=0.260 Sum_probs=143.7
Q ss_pred CCCEEEeCCCc-ccccHHHHHHHHH--cCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q psy3968 38 DVDAIHPGYGF-LSERSDFAQAVLD--AGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLK 114 (1080)
Q Consensus 38 ~iDaVipg~g~-lsE~~~~a~~l~~--~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~ 114 (1080)
.+|+|++.... ..+.....+.++. .|++++ ++++++..+.||..++++|+++|||+|++ ..+.+.+++.+++++
T Consensus 55 ~~d~v~~~~~~~~~~~~~~l~~~~~~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~--~~~~~~~~~~~~~~~ 131 (324)
T 1z2n_X 55 EPNAIITKRTHPVGKMADEMRKYEKDHPKVLFL-ESSAIHDMMSSREEINALLIKNNIPIPNS--FSVKSKEEVIQLLQS 131 (324)
T ss_dssp CCSEEEECCSCSSSHHHHHHHHHHHHCTTSEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCE--EEESSHHHHHHHHHT
T ss_pred CceEEEEeccchHHHHHHHHHHHHHhCCCCeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCE--EEeCCHHHHHHHHHH
Confidence 68999987542 2222223333333 788865 89999999999999999999999999998 467888998888887
Q ss_pred h--CCcEEEEeCCCCCC---cCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCC-CcEEEEEEEEecCCcEEEE
Q psy3968 115 Y--GLPVIFKAAYGGGG---RGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIER-PRHIEVQLLGDKAGNVVHL 188 (1080)
Q Consensus 115 i--gfPvVVKP~~g~Gg---~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G-~~ei~v~vl~d~~G~vv~l 188 (1080)
. +||+|+||..|.|| +|++++++.+++.. + +.++++|+||++ .+++++.+++ |.++..
T Consensus 132 ~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~------------~-~~~~lvqe~i~~~g~~~~v~v~g---~~~~~~ 195 (324)
T 1z2n_X 132 KQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD------------I-HFPCLCQHYINHNNKIVKVFCIG---NTLKWQ 195 (324)
T ss_dssp TCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT------------C-CSSEEEEECCCCTTCEEEEEEET---TEEEEE
T ss_pred cCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh------------c-CCCEEEEEccCCCCcEEEEEEEC---CEEEEE
Confidence 5 49999999999999 99999999988652 1 468999999985 2677776663 344443
Q ss_pred Eeeecc-ccc----------------------------------cccE-EEEEcCCCCCCHHHH-HHHHHHHHHHHHHcC
Q psy3968 189 YERDCS-VQR----------------------------------RHQK-VVEIAPAPHLDINVR-NKMTDLAVKLAKHVG 231 (1080)
Q Consensus 189 ~~r~~~-~~~----------------------------------~~~~-~~~~~Pa~~l~~~~~-~~l~~~a~~i~~alg 231 (1080)
..+... ... .... .....+. .+.... +++.+.+.++++++|
T Consensus 196 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~a~~~~~~lg 273 (324)
T 1z2n_X 196 TRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPI--LLNLTSEAEMRDLAYKVRCALG 273 (324)
T ss_dssp EECCCCCCCCSSCCEEEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTT--TTTSCCHHHHHHHHHHHHHHHT
T ss_pred EecCcccccCCCccceeeccccchhhhccccccccccccccccccchhhccccCCc--cccCCCHHHHHHHHHHHHHHhC
Confidence 222110 000 0000 0000111 112222 689999999999999
Q ss_pred CcceEEEEEEEc-CCCCEEEEEEeccCCCC
Q psy3968 232 YSNAGTVEFLCD-ESGQFYFIEVNARLQVE 260 (1080)
Q Consensus 232 ~~G~~~vEfivd-~dG~~~~iEvNpR~~g~ 260 (1080)
+. .+++||+++ .+|++||+|||||++..
T Consensus 274 ~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~ 302 (324)
T 1z2n_X 274 VQ-LCGIDFIKENEQGNPLVVDVNVFPSYG 302 (324)
T ss_dssp CS-EEEEEEECGGGCSSCEEEEEEESCCTT
T ss_pred Cc-EEeeEEEEEcCCCCEEEEEEcCCCCcC
Confidence 97 788999998 46889999999998753
No 83
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.71 E-value=1.4e-17 Score=206.66 Aligned_cols=242 Identities=17% Similarity=0.232 Sum_probs=172.1
Q ss_pred CHHHHHHHHHHcCCCEEEeCCC--cccccHHHHHHHHHcCCcEeCCcH-HHHHHhcCHHHHHHHHHHCCCCCCCCCCCCC
Q psy3968 26 NIPEIIRVAKENDVDAIHPGYG--FLSERSDFAQAVLDAGIRFIGPSP-YVVQQMGDKVAARQAAIDSGVPIVPGTPGPI 102 (1080)
Q Consensus 26 d~e~Ii~~a~~~~iDaVipg~g--~lsE~~~~a~~l~~~gi~~iGps~-eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v 102 (1080)
+.+.|+++|++.++++++.+.+ ++.........+...|. +.|+++ .++..++||..+|++|+++|||+|++ ..+
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~g~-itg~~~~~a~~~~~DK~~tk~lL~~~GIPvP~~--~~~ 505 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKNGN-MTSKDNYIVPLAMANKVVTKKILDEKHFPTPFG--DEF 505 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEETTT-BCTTSCTHHHHHTTTSHHHHHHHHHTTCCCCCC--CCE
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEecCC-eeCCCHHHHHHHHhCHHHHHHHHHHCCcCCCCE--EEE
Confidence 4689999999999999886653 33211110000000121 234444 56677789999999999999999998 467
Q ss_pred CCHHHHHHHH-HHhCCcEEEEeCCCCCCcCeEEEC---CHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEE
Q psy3968 103 TTTEEAMEFC-LKYGLPVIFKAAYGGGGRGMRVVR---KMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLL 178 (1080)
Q Consensus 103 ~s~ee~~~~~-~~igfPvVVKP~~g~Gg~GV~iv~---s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl 178 (1080)
.+.+++.+++ +.+|||+||||..|++|+||++++ +.+++.++++.+... +..++||+||+| +|+++.++
T Consensus 506 ~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~~~------~~~vlVEefI~G-~E~~v~Vv 578 (750)
T 3ln6_A 506 TDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAFTE------DSAILVEEYIEG-TEYRFFVL 578 (750)
T ss_dssp ETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEE
T ss_pred CCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHHhh------CCcEEEEeccCC-CEEEEEEE
Confidence 8888887777 678999999999999999999998 999999999887642 568999999999 89999998
Q ss_pred EecCCcEEEEEeeeccc------------------c--c--ccc------------------------------EEEEEc
Q psy3968 179 GDKAGNVVHLYERDCSV------------------Q--R--RHQ------------------------------KVVEIA 206 (1080)
Q Consensus 179 ~d~~G~vv~l~~r~~~~------------------~--~--~~~------------------------------~~~~~~ 206 (1080)
. |+++....|.... . + .+. ..+...
T Consensus 579 g---g~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~ 655 (750)
T 3ln6_A 579 E---GDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELR 655 (750)
T ss_dssp T---TEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESC
T ss_pred C---CEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHHcCCCccccCCCCCEEEEe
Confidence 4 3666554442211 0 0 000 000000
Q ss_pred CCC---------CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC--------CCCEEEEEEeccCCCC-ccchhccc
Q psy3968 207 PAP---------HLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE--------SGQFYFIEVNARLQVE-HTVTEEIT 268 (1080)
Q Consensus 207 Pa~---------~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~--------dG~~~~iEvNpR~~g~-~~~~e~~t 268 (1080)
... .+++++..++.+.|.++++++|+. .+.||++.+. .|.+++||||++++-. |..-...+
T Consensus 656 ~~~Nls~Gg~~~d~td~i~p~~~~~a~~aa~~igl~-~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~~h~~p~~g~ 734 (750)
T 3ln6_A 656 RNSNISTGGDSIDVTNTMDPTYKQLAAEMAEAMGAW-VCGVDLIIPNATQAYSKDKKNATCIELNFNPLMYMHTYCQEGP 734 (750)
T ss_dssp SSCCTTTTCEEEECTTTSCHHHHHHHHHHHHHHTCS-SCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCHHHHSCSBSC
T ss_pred ecccccCCCceeeccccCCHHHHHHHHHHHHHhCCC-eEEEEEEecCccccccccCCCeEEEEEcCCcchhhhcCcccCC
Confidence 000 123445568899999999999998 5669999874 3568999999999863 33334568
Q ss_pred CCCHHHHHHHHHc
Q psy3968 269 GVDLVQSQIRVAE 281 (1080)
Q Consensus 269 Gvdl~~~~l~~al 281 (1080)
|.|+.+.+++...
T Consensus 735 ~~~v~~~ii~~lf 747 (750)
T 3ln6_A 735 GQSITPRILAKLF 747 (750)
T ss_dssp CCCCHHHHHHHHC
T ss_pred CCcHHHHHHHHhC
Confidence 9999999988763
No 84
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=99.70 E-value=4.7e-17 Score=176.32 Aligned_cols=178 Identities=14% Similarity=0.188 Sum_probs=137.0
Q ss_pred hcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCC-----CCCcCeEE-ECCHhHHHHHHHHHHH
Q psy3968 77 MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYG-----GGGRGMRV-VRKMEDVEENFQRASS 150 (1080)
Q Consensus 77 ~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g-----~Gg~GV~i-v~s~eeL~~a~~~~~~ 150 (1080)
..||..+|++|+++|||+|++ ..+++.+++.++++++|||+|+||..+ ++|.|+.+ ++|.+|+.++++.+..
T Consensus 19 ~l~k~~~k~ll~~~GIp~p~~--~~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~ 96 (238)
T 1wr2_A 19 AMVEYEAKQVLKAYGLPVPEE--KLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHE 96 (238)
T ss_dssp EECHHHHHHHHHTTTCCCCCC--EEESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCcCCCCe--EEeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHH
Confidence 359999999999999999998 568899999999999999999999999 77889998 7999999999999887
Q ss_pred HHHHhcC---CCcEEEeeccCCCcEEEEEEEEec-CCcEEEEEeeeccccccccEEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy3968 151 EAKAAFG---NGAMFIEKFIERPRHIEVQLLGDK-AGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKL 226 (1080)
Q Consensus 151 ~a~~~~g---~~~vlVEeyI~G~~ei~v~vl~d~-~G~vv~l~~r~~~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i 226 (1080)
.....++ ...++||+|+++.+|+++.++.|. .|.++.++.-...+...........| ++.+..+++.+.+.++
T Consensus 97 ~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~Gg~~iE~~~d~~~~~~P---l~~~~~~~~~~~~~~~ 173 (238)
T 1wr2_A 97 NAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGLGGIFVEILKDVTFRLVP---ITEKDARKMIQEIKAY 173 (238)
T ss_dssp HHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEECSTTHHHHCCCEEEESS---CCHHHHHHHHHTSTTH
T ss_pred hhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEecCCceeeeecceeeecCC---CCHHHHHHHHHHHHHH
Confidence 6554443 258999999996699999999997 56666554311111111122233333 8899999999999999
Q ss_pred HHHcCCcceEEEEE-------------EEcCCCCEEEEEEeccCCC
Q psy3968 227 AKHVGYSNAGTVEF-------------LCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 227 ~~alg~~G~~~vEf-------------ivd~dG~~~~iEvNpR~~g 259 (1080)
...+|++|...+|+ +.+.+++++++||||++-.
T Consensus 174 ~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~ 219 (238)
T 1wr2_A 174 PILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVY 219 (238)
T ss_dssp HHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEC
T ss_pred HHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEe
Confidence 99999999755552 2232333999999998753
No 85
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.62 E-value=1.2e-14 Score=161.97 Aligned_cols=220 Identities=15% Similarity=0.115 Sum_probs=154.6
Q ss_pred CCCEEEeCCCccc--c---cHHHHHHHHHcCCcEeCCcHHHHHHhcCH----HHHHHHHHHCCC---CCCCCCCCCCCCH
Q psy3968 38 DVDAIHPGYGFLS--E---RSDFAQAVLDAGIRFIGPSPYVVQQMGDK----VAARQAAIDSGV---PIVPGTPGPITTT 105 (1080)
Q Consensus 38 ~iDaVipg~g~ls--E---~~~~a~~l~~~gi~~iGps~eai~~~~DK----~~~r~~l~~~GI---pvp~~~~~~v~s~ 105 (1080)
.+|++++..+... + ...+.+.++..|++++ ++++++..|+|| ..+.++++++|+ |.++.+. ..+.
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~--~~~~ 144 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY--YPNH 144 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE--ESSG
T ss_pred cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEe--eCCh
Confidence 6899999765222 1 1455677899999998 999999999999 667788889998 8665432 2333
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcE
Q psy3968 106 EEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV 185 (1080)
Q Consensus 106 ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v 185 (1080)
.+ .++..|||+|+||..|+.|+||.++++.+++++.++..... +..+++||||+..+.+.+.++++ ++
T Consensus 145 ~~---~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VvGg---~v 212 (309)
T 1i7n_A 145 RE---MLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIGN---NY 212 (309)
T ss_dssp GG---GSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETT---EE
T ss_pred hh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeecCCCceEEEEEECC---EE
Confidence 33 34568999999999999999999999999998888654432 35688999999667888888844 56
Q ss_pred EEEEeeec-cccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEcCCCCEEEEEEec--cCCCCc
Q psy3968 186 VHLYERDC-SVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-GYSNAGTVEFLCDESGQFYFIEVNA--RLQVEH 261 (1080)
Q Consensus 186 v~l~~r~~-~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEfivd~dG~~~~iEvNp--R~~g~~ 261 (1080)
+....+.. .-.+.+.......+. .++ ++..+++.++.+++ |+ +.+.||++.+.+|.++++|||. -++-.
T Consensus 213 ~a~~Rr~~~g~wrtN~~~~~~e~~-~l~----~e~~~la~~A~~a~gGl-di~GVDll~~~~g~~~V~EVN~~~~P~~~- 285 (309)
T 1i7n_A 213 KAYMRTSISGNWKTNTGSAMLEQI-AMS----DRYKLWVDACSEMFGGL-DICAVKAVHGKDGKDYIFEVMDCSMPLIG- 285 (309)
T ss_dssp EEEEEESSCTTTSCSCCCSSEEEE-CCC----HHHHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCS-
T ss_pred EEEEEEcCCCCCeecCCcceeeec-CCC----HHHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEECCCCCCCcc-
Confidence 65444321 111111111111121 234 35778899999999 56 5666999999899899999999 65532
Q ss_pred cchhcccCCCHHHHHHHHH
Q psy3968 262 TVTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 262 ~~~e~~tGvdl~~~~l~~a 280 (1080)
-++..++.++.+.+++..
T Consensus 286 -~~~~~~~~~ia~~ii~~~ 303 (309)
T 1i7n_A 286 -EHQVEDRQLITDLVISKM 303 (309)
T ss_dssp -SCHHHHHHHHHHHHHHHH
T ss_pred -chhhhhHHHHHHHHHHHH
Confidence 223356777777776543
No 86
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.8e-14 Score=162.43 Aligned_cols=223 Identities=16% Similarity=0.124 Sum_probs=159.0
Q ss_pred CCCEEEeCCCccc--c---cHHHHHHHHHcCCcEeCCcHHHHHHhcCH----HHHHHHHHHCCC---CCCCCCCCCCCCH
Q psy3968 38 DVDAIHPGYGFLS--E---RSDFAQAVLDAGIRFIGPSPYVVQQMGDK----VAARQAAIDSGV---PIVPGTPGPITTT 105 (1080)
Q Consensus 38 ~iDaVipg~g~ls--E---~~~~a~~l~~~gi~~iGps~eai~~~~DK----~~~r~~l~~~GI---pvp~~~~~~v~s~ 105 (1080)
.+|++++..+... + ...+.+.++..|++++ ++++++..|+|| ..+.++++++|+ |.++... ..+.
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~--~~~~ 161 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTF--FPNH 161 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEE--ESSS
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEe--cCch
Confidence 6899999866321 1 2345677899999998 999999999999 677788899998 8655431 2222
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcE
Q psy3968 106 EEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV 185 (1080)
Q Consensus 106 ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v 185 (1080)
.+ .++.+|||+|+||..|+.|+||.++++.++++..++..... +..+++||||+..+++.+.++++ ++
T Consensus 162 ~~---~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VVGg---~v 229 (344)
T 2p0a_A 162 KP---MVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA------KTYATTEAFIDSKYDIRIQKIGS---NY 229 (344)
T ss_dssp TT---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETT---EE
T ss_pred hh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeccCCCccEEEEEECC---EE
Confidence 22 34468999999999999999999999999999877654321 35688999999667888888844 56
Q ss_pred EEEEeeecc-ccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEcCCCCEEEEEEec--cCCCCc
Q psy3968 186 VHLYERDCS-VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-GYSNAGTVEFLCDESGQFYFIEVNA--RLQVEH 261 (1080)
Q Consensus 186 v~l~~r~~~-~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEfivd~dG~~~~iEvNp--R~~g~~ 261 (1080)
+....+..+ -.+.+.......+. .+++ +..+++.++.+++ |+ +.+.||++.+.+|.+|++|||. .++-
T Consensus 230 va~~R~~~~g~wrtN~~~~~~e~~-~l~~----e~~~la~~Aa~a~gGl-di~GVDll~~~~G~~~VlEVN~~~~P~~-- 301 (344)
T 2p0a_A 230 KAYMRTSISGNWKANTGSAMLEQV-AMTE----RYRLWVDSCSEMFGGL-DICAVKAVHSKDGRDYIIEVMDSSMPLI-- 301 (344)
T ss_dssp EEEEEEESSSCSSTTSSSEEEEEE-CCCH----HHHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCC--
T ss_pred EEEEEecCCCCCeecCCceEEEee-CCCH----HHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEEcCCCCCcc--
Confidence 654333211 11111111221222 2443 5788899999999 56 5666999999999899999999 5432
Q ss_pred cchhcccCCCHHHHHHHHHcCC
Q psy3968 262 TVTEEITGVDLVQSQIRVAEGM 283 (1080)
Q Consensus 262 ~~~e~~tGvdl~~~~l~~alG~ 283 (1080)
.-++..++.++.+.+++...-.
T Consensus 302 ~~~~~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 302 GEHVEEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTC
T ss_pred cchhhhHHHHHHHHHHHHHHHh
Confidence 2345568889999998877544
No 87
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.59 E-value=3.3e-14 Score=162.86 Aligned_cols=220 Identities=16% Similarity=0.135 Sum_probs=156.4
Q ss_pred CCCEEEeCCCccc-----ccHHHHHHHHHcCCcEeCCcHHHHHHhcCH----HHHHHHHHHCCC---CCCCCCCCCCCCH
Q psy3968 38 DVDAIHPGYGFLS-----ERSDFAQAVLDAGIRFIGPSPYVVQQMGDK----VAARQAAIDSGV---PIVPGTPGPITTT 105 (1080)
Q Consensus 38 ~iDaVipg~g~ls-----E~~~~a~~l~~~gi~~iGps~eai~~~~DK----~~~r~~l~~~GI---pvp~~~~~~v~s~ 105 (1080)
.+|+|++..+... ....+.+.++..|++++ ++++++.+|+|| ..+.++++++|+ |.++... ..+.
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t~--~~~~ 256 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQTF--YPNH 256 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEE--ESSG
T ss_pred CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceEe--cCch
Confidence 6899999765222 12355677899999998 999999999999 567778889998 7555431 2332
Q ss_pred HHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCCcEEEEEEEEecCCcE
Q psy3968 106 EEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV 185 (1080)
Q Consensus 106 ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~v 185 (1080)
.+ +++..|||+|+||..|+.|+||.++++.++++..++..... +..+++||||+..+++.+.++++ ++
T Consensus 257 ~~---~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~------~~~~~vQEfI~~g~DIRv~VVGg---~v 324 (422)
T 1pk8_A 257 KE---MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT------KTYATAEPFIDAKYDVRVQKIGQ---NY 324 (422)
T ss_dssp GG---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TSCEEEEECCCEEEEEEEEEETT---EE
T ss_pred hh---hhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc------CceEEEEeecCCCceEEEEEECC---EE
Confidence 22 34568999999999999999999999999999888655432 35688999999667888888844 56
Q ss_pred EEEEeeec-cccccccEEEEEcCCCCCCHHHHHHHHHHHHHHHHHc-CCcceEEEEEEEcCCCCEEEEEEec--cCCCCc
Q psy3968 186 VHLYERDC-SVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV-GYSNAGTVEFLCDESGQFYFIEVNA--RLQVEH 261 (1080)
Q Consensus 186 v~l~~r~~-~~~~~~~~~~~~~Pa~~l~~~~~~~l~~~a~~i~~al-g~~G~~~vEfivd~dG~~~~iEvNp--R~~g~~ 261 (1080)
+....+.. .-.+.+.......+. .+++ ++++++.++.+++ |+ +++.||++.+.+|.+|++|||. .++-+
T Consensus 325 va~~Rr~~~g~WrtNvg~g~~e~i-~lt~----e~~elA~kAaka~gGl-diaGVDlL~s~dG~~~VlEVN~s~~P~~~- 397 (422)
T 1pk8_A 325 KAYMRTSVSGNWKTNTGSAMLEQI-AMSD----RYKLWVDTCSEIFGGL-DICAVEALHGKDGRDHIIEVVGSSMPLIG- 397 (422)
T ss_dssp EEEEEEESSSCSSTTSSCEEEEEE-CCCH----HHHHHHHHHTTGGGCC-SEEEEEEEEETTSCEEEEEEECTTCCCCT-
T ss_pred EEEEEEcCCCCceeccCceeeeee-CCCH----HHHHHHHHHHHHhCCC-CEEEEEEEEcCCCCEEEEEECCCCCCCcc-
Confidence 65444321 111212111221222 2443 6788999999999 56 5666999999999899999999 55432
Q ss_pred cchhcccCCCHHHHHHHHH
Q psy3968 262 TVTEEITGVDLVQSQIRVA 280 (1080)
Q Consensus 262 ~~~e~~tGvdl~~~~l~~a 280 (1080)
-++..++.++.+.+++..
T Consensus 398 -g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 398 -DHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp -TCHHHHHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHHHHH
Confidence 234467888888888765
No 88
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=143.80 Aligned_cols=104 Identities=38% Similarity=0.674 Sum_probs=90.9
Q ss_pred HHhcCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHH
Q psy3968 75 QQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKA 154 (1080)
Q Consensus 75 ~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~ 154 (1080)
.+++||..++++|+++|||+|+++...+.+.+++.++++.++||+|+||..|+||+|+++++|.+++.++++.+......
T Consensus 4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~ 83 (108)
T 2cqy_A 4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAAS 83 (108)
T ss_dssp CCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999998412578999999999999999999999999999999999999999999988765444
Q ss_pred hcCCCcEEEeeccCCCcEEEEEEE
Q psy3968 155 AFGNGAMFIEKFIERPRHIEVQLL 178 (1080)
Q Consensus 155 ~~g~~~vlVEeyI~G~~ei~v~vl 178 (1080)
.+++..++||+||+|.+|+++.++
T Consensus 84 ~~~~~~~lvee~i~g~~E~~v~v~ 107 (108)
T 2cqy_A 84 SFGDDRLLIEKFIDNPRHISGPSS 107 (108)
T ss_dssp HTSSCCEEEEECCSSSSCCCSCCC
T ss_pred hcCCCcEEEeeccCCCcEEEEEec
Confidence 565678999999999768887664
No 89
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=99.54 E-value=1.1e-16 Score=179.33 Aligned_cols=166 Identities=15% Similarity=0.139 Sum_probs=122.5
Q ss_pred ceeeeecccccccccccceecccccccccchhhhhccCccceeecc----CCccchheecccccCCeEEEEEECCccccc
Q psy3968 806 SLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENW----GGATFDVALRFLHECPWERLEEMRKQIPNI 881 (1080)
Q Consensus 806 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----G~~~~~~~~r~~~~~~~~~~~~v~g~~~~v 881 (1080)
+|.|+|||+|||+||. +++|++.++.++++.|+. .|...||+| |+++|++++++. ||++. +.+
T Consensus 2 ~V~I~DtTlRDG~Qs~-~~~~~~~~k~~ia~~L~~--aGv~~IEvg~~~~p~~~f~~~~~~~---~~e~l-------~~i 68 (320)
T 3dxi_A 2 SLKILDCTLRDGGYYT-NWDFNSKIVDAYILAMNE--LPIDYLEVGYRNKPSKEYMGKFGYT---PVSVL-------KHL 68 (320)
T ss_dssp -CEEEECHHHHHGGGG-TTCCCHHHHHHHHHHHHT--TTCCEEEEEECCSCCSSCCCHHHHC---CHHHH-------HHH
T ss_pred eEEEEECCcCccccCC-CCcCCHHHHHHHHHHHHH--hCCCEEEEecccCCccccccccccC---hHHHH-------HHH
Confidence 5789999999999996 899999999999887877 488999999 788888877775 34321 111
Q ss_pred cccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeE
Q psy3968 882 PFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGV 961 (1080)
Q Consensus 882 p~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~ 961 (1080)
+ . +|++.+.
T Consensus 69 ------~------------------------------~-~~~~~~~---------------------------------- 77 (320)
T 3dxi_A 69 ------R------------------------------N-ISTKKIA---------------------------------- 77 (320)
T ss_dssp ------H------------------------------H-HCCSEEE----------------------------------
T ss_pred ------h------------------------------h-ccCCeEE----------------------------------
Confidence 0 0 0000000
Q ss_pred EeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCC
Q psy3968 962 VKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDP 1041 (1080)
Q Consensus 962 v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1080)
..+...+ .+++++.+.++. .+.|||.++|||.+|+++....+++++|+.|..+++++||+.
T Consensus 78 -------~L~r~~~-----~~~~dv~~~~~a--~~~Gvd~~ri~~~~~nle~~~~~v~~ak~~G~~v~~~~~~~~----- 138 (320)
T 3dxi_A 78 -------IMLNEKN-----TTPEDLNHLLLP--IIGLVDMIRIAIDPQNIDRAIVLAKAIKTMGFEVGFNVMYMS----- 138 (320)
T ss_dssp -------EEEEGGG-----CCGGGHHHHHGG--GTTTCSEEEEEECGGGHHHHHHHHHHHHTTTCEEEEEECCTT-----
T ss_pred -------EEecCCC-----CChhhHHHHHHh--hhcCCCEEEEEecHHHHHHHHHHHHHHHHCCCEEEEEEEeCC-----
Confidence 0111111 355666555443 348999999999888777777777889999999999999963
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1042 SKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
|.++.++|+++++++ ++||++||||| .|+++|.
T Consensus 139 --~~~~~~~~l~~~~~~-~~G~~~i~l~Dt~G~~~P~ 172 (320)
T 3dxi_A 139 --KWAEMNGFLSKLKAI-DKIADLFCMVDSFGGITPK 172 (320)
T ss_dssp --TGGGSTTSGGGGGGG-TTTCSEEEEECTTSCCCHH
T ss_pred --CCCCHHHHHHHHHHh-hCCCCEEEECcccCCCCHH
Confidence 366777999999884 78999999999 9999985
No 90
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.52 E-value=4.4e-14 Score=160.88 Aligned_cols=174 Identities=14% Similarity=0.188 Sum_probs=123.2
Q ss_pred cCCcEeCCcHHHHHHhcCHHHHHHHHHHC-------CCCCCCCCCCCCCC--HHHHHHHHH--HhCCcEEEEeCCCCC--
Q psy3968 62 AGIRFIGPSPYVVQQMGDKVAARQAAIDS-------GVPIVPGTPGPITT--TEEAMEFCL--KYGLPVIFKAAYGGG-- 128 (1080)
Q Consensus 62 ~gi~~iGps~eai~~~~DK~~~r~~l~~~-------GIpvp~~~~~~v~s--~ee~~~~~~--~igfPvVVKP~~g~G-- 128 (1080)
.|++++ +++.++..+.||..|.+++.++ |||+|++. .+.+ .+++.+.++ .++||+|+||..|.|
T Consensus 100 ~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~--~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~ 176 (346)
T 2q7d_A 100 PETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFM--ELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTN 176 (346)
T ss_dssp TTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEE--EECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTT
T ss_pred CCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEE--EEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcce
Confidence 478877 9999999999999999999997 99999984 3443 244544443 478999999997643
Q ss_pred CcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccC--CCcEEEEEEEEecCCcEEEEEeeeccccccc-------
Q psy3968 129 GRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE--RPRHIEVQLLGDKAGNVVHLYERDCSVQRRH------- 199 (1080)
Q Consensus 129 g~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~--G~~ei~v~vl~d~~G~vv~l~~r~~~~~~~~------- 199 (1080)
|+|+.++.+.++|... +.++++||||+ | +++.|-++++ .++....+.....+..
T Consensus 177 s~~v~~v~~~~~l~~~-------------~~~~lvQefI~~~G-~dirv~VvG~---~v~~~~r~sl~~~~~~~~~~~~~ 239 (346)
T 2q7d_A 177 SHEMAIVFNQEGLNAI-------------QPPCVVQNFINHNA-VLYKVFVVGE---SYTVVQRPSLKNFSAGTSDRESI 239 (346)
T ss_dssp CCEEEEECSGGGTTC---------------CCEEEEECCCCTT-EEEEEEEETT---EEEEEEEECCCCCC----CCCCE
T ss_pred eeeeEEecCHHHHHhc-------------CCCEEEEEeeCCCC-eEEEEEEECC---EEEEEEEecCCCcCcCccccccc
Confidence 6799999999988652 35799999997 5 8888888743 4554433211100000
Q ss_pred ----------cEEEEEcC------CCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEcC-CCCEEEEEEeccCC
Q psy3968 200 ----------QKVVEIAP------APHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE-SGQFYFIEVNARLQ 258 (1080)
Q Consensus 200 ----------~~~~~~~P------a~~l~~~~~~~l~~~a~~i~~alg~~G~~~vEfivd~-dG~~~~iEvNpR~~ 258 (1080)
.......| ...+++ .+++.++|.++.++||++.++ +|++++. +|++|+||||+=++
T Consensus 240 ~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~--~~el~~lA~~a~~alGl~~~g-vDii~~~~~g~~~VlEVN~~PG 312 (346)
T 2q7d_A 240 FFNSHNVSKPESSSVLTELDKIEGVFERPS--DEVIRELSRALRQALGVSLFG-IDIIINNQTGQHAVIDINAFPG 312 (346)
T ss_dssp EEEGGGTSSTTCCCGGGCCSCCCSCCCCCC--HHHHHHHHHHHHHHHCCCEEE-EEEEECTTTCCEEEEEEEESCC
T ss_pred cccceeeccCCccccccccccccccccCCC--hHHHHHHHHHHHHHhCCceEe-eEEEeecCCCCEEEEEEeCCcc
Confidence 00000111 011222 468999999999999999775 9999986 67899999999443
No 91
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=99.49 E-value=9.6e-15 Score=166.50 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=127.5
Q ss_pred ccceeeeecccccccccccceecccccccccchhhhhccCccceeec-----cCCccchheecccccCCeEEEEEECCcc
Q psy3968 804 NKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLEN-----WGGATFDVALRFLHECPWERLEEMRKQI 878 (1080)
Q Consensus 804 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----~G~~~~~~~~r~~~~~~~~~~~~v~g~~ 878 (1080)
.++|.|+|||+|||+|| .+++|++.+..+++..|++ .|...||+ |++++|+. +...++++++ .
T Consensus 6 ~~~v~i~DttlRDG~Q~-~~~~~~~e~k~~i~~~L~~--~Gvd~IEvG~~~g~p~ssp~~--g~~~~~~~e~-------l 73 (345)
T 1nvm_A 6 SKKLYISDVTLRDGSHA-IRHQYTLDDVRAIARALDK--AKVDSIEVAHGDGLQGSSFNY--GFGRHTDLEY-------I 73 (345)
T ss_dssp CCBCEEEECTTTHHHHH-TTTCCCHHHHHHHHHHHHH--HTCSEEECSCTTSTTCCBTTT--BCCSSCHHHH-------H
T ss_pred CCCcEEEECCCCcccCC-CCCCCCHHHHHHHHHHHHH--cCCCEEEEecCCCCCCCCCcc--cCCCCCHHHH-------H
Confidence 46799999999999999 6899999999999888877 48999999 78877763 3333333321 0
Q ss_pred ccccccceeccccccccccCCCCccccCCCcCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCC
Q psy3968 879 PNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPV 958 (1080)
Q Consensus 879 ~~vp~q~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~ 958 (1080)
+.+ .
T Consensus 74 ~~i------~---------------------------------------------------------------------- 77 (345)
T 1nvm_A 74 EAV------A---------------------------------------------------------------------- 77 (345)
T ss_dssp HHH------H----------------------------------------------------------------------
T ss_pred HHH------H----------------------------------------------------------------------
Confidence 000 0
Q ss_pred CeEEeEeeeeeeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCC
Q psy3968 959 QGVVKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDV 1038 (1080)
Q Consensus 959 ~G~v~~~~~~~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1080)
+.+ .+..+..+.++.....++.+.|.+.|+|..+||+++||+++++.+++++|+.|..++..++-.
T Consensus 78 ----------~~~-~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a--- 143 (345)
T 1nvm_A 78 ----------GEI-SHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMS--- 143 (345)
T ss_dssp ----------TTC-SSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEEST---
T ss_pred ----------hhC-CCCEEEEEecCCcccHHHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeC---
Confidence 000 011222222232223567888999999999999999999999999999999999999988622
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1039 SDPSKKKYDLKYYQNLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+.++.+|++++++++.++|++.|+|+| .|.++|.
T Consensus 144 -----~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~ 178 (345)
T 1nvm_A 144 -----HMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMN 178 (345)
T ss_dssp -----TSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHH
T ss_pred -----CCCCHHHHHHHHHHHHHCCCCEEEECCCcCccCHH
Confidence 368999999999999999999999999 9999984
No 92
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=124.27 Aligned_cols=72 Identities=26% Similarity=0.378 Sum_probs=67.2
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCch
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPDN 985 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~~ 985 (1080)
++..|.|||+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++. . +.|..|++|++|...++
T Consensus 4 ~~~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~~ 77 (84)
T 2kcc_A 4 DPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDDL 77 (84)
T ss_dssp CTTEECCSSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSCS
T ss_pred CCceEECCCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCCh
Confidence 456799999999999999999999999999999999999999999999999999 8 99999999999965443
No 93
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-12 Score=121.68 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=67.6
Q ss_pred CCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCch
Q psy3968 912 SVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPDN 985 (1080)
Q Consensus 912 ~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~~ 985 (1080)
.++..|.|||+|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|. +.++ +.|..|++|++|...++
T Consensus 15 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~~~ 89 (100)
T 2dn8_A 15 NDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELDDP 89 (100)
T ss_dssp CCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCSCS
T ss_pred CCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcCCc
Confidence 3556899999999999999999999999999999999999999999999999 8888 99999999999975554
No 94
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.33 E-value=1.9e-12 Score=117.46 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=61.7
Q ss_pred CCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--e-eeecCceeEEecCCc
Q psy3968 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--M-LLRGANAVGYTNYPD 984 (1080)
Q Consensus 919 aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~-~v~~g~~l~~~~~~~ 984 (1080)
++.+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ + .|..|++|++|..+.
T Consensus 16 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 16 TMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp TCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred CCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 35789999999999999999999999999999999999999999999999 7 799999999997543
No 95
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.31 E-value=3.4e-12 Score=111.29 Aligned_cols=68 Identities=28% Similarity=0.494 Sum_probs=64.4
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
.|.||++|+|.+|+|++||.|++||+|+.||+|||+.+|+||.+|+|.++.+. +.|..|++|+.|..+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 70 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence 37899999999999999999999999999999999999999999999999998 999999999998643
No 96
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.29 E-value=2.1e-12 Score=115.17 Aligned_cols=68 Identities=28% Similarity=0.348 Sum_probs=64.4
Q ss_pred CCcccCCCCeEEEEE-------EecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 914 PGQVGAPMPGSVMEI-------RVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~-------~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
+..|.|||+|+|.++ +|++||.|++||+|+.||+|||+++|+||.+|+|.++.++ +.|..|++|+.|+
T Consensus 4 ~~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 4 GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CeEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 346999999999997 9999999999999999999999999999999999999999 9999999999873
No 97
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=99.29 E-value=1.8e-12 Score=144.95 Aligned_cols=85 Identities=20% Similarity=0.100 Sum_probs=74.4
Q ss_pred HHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.+.|.+.|+|..+||++.||. +.++.+++++|+.|..+++.|||+.+ .|....++.+|++++++
T Consensus 87 i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~--~~~~~~~~~~~~~~~~~ 164 (307)
T 1ydo_A 87 LENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFG--CPYEKDVPIEQVIRLSE 164 (307)
T ss_dssp HHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTC--BTTTBCCCHHHHHHHHH
T ss_pred HHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEec--CCcCCCCCHHHHHHHHH
Confidence 456778899999999999996 34588899999999999999999975 23334689999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++|||.|+|+| .|+++|.
T Consensus 165 ~~~~~Ga~~i~l~DT~G~~~P~ 186 (307)
T 1ydo_A 165 ALFEFGISELSLGDTIGAANPA 186 (307)
T ss_dssp HHHHHTCSCEEEECSSCCCCHH
T ss_pred HHHhcCCCEEEEcCCCCCcCHH
Confidence 99999999999999 9999985
No 98
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.29 E-value=3.7e-12 Score=120.12 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=64.2
Q ss_pred CCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--e-eeecCceeEEecCCchhHHH
Q psy3968 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--M-LLRGANAVGYTNYPDNVVYK 989 (1080)
Q Consensus 920 Pm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~-~v~~g~~l~~~~~~~~~~~~ 989 (1080)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ + .|..|++|++|....+.+..
T Consensus 19 ~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~~~~~~ 91 (108)
T 2dne_A 19 MQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEA 91 (108)
T ss_dssp CCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCHHHHHH
T ss_pred cccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecCccchhh
Confidence 4679999999999999999999999999999999999999999999999 7 79999999999876655443
No 99
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=99.29 E-value=2.1e-12 Score=148.87 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=70.9
Q ss_pred HHHHHcCCChhhhccccCC-------------ccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q psy3968 992 DLSVQVGMDVFRVFDSLNY-------------LPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADEL 1058 (1080)
Q Consensus 992 ~~a~~~gid~~~v~~~ln~-------------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1080)
+.|.+.|+|..++|+++|| +++++.+++++|+.|++.+..+||+.. +.++++||+++++++
T Consensus 81 ~~a~~~g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~------~~~~~~~~~~~~~~~ 154 (382)
T 2ztj_A 81 KVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDT------FRSEEQDLLAVYEAV 154 (382)
T ss_dssp HHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTT------TTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeC------CCCCHHHHHHHHHHH
Confidence 4677889999999999999 789999999999999999999999853 479999999999999
Q ss_pred HHcCCcEEEEec-CCccCCC
Q psy3968 1059 VKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1059 ~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.++ |+.|||+| .|+++|.
T Consensus 155 ~~~-a~~i~l~DT~G~~~P~ 173 (382)
T 2ztj_A 155 APY-VDRVGLADTVGVATPR 173 (382)
T ss_dssp GGG-CSEEEEEETTSCCCHH
T ss_pred HHh-cCEEEecCCCCCCCHH
Confidence 999 99999999 9999995
No 100
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.27 E-value=5e-12 Score=116.09 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=60.9
Q ss_pred CCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 920 Pm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ +.|..|++|++|..+
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 4689999999999999999999999999999999999999999999999 999999999999643
No 101
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.9e-12 Score=117.21 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=61.0
Q ss_pred CCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eee-ecCceeEEecCCc
Q psy3968 920 PMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLL-RGANAVGYTNYPD 984 (1080)
Q Consensus 920 Pm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v-~~g~~l~~~~~~~ 984 (1080)
.++|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ +.| ..|++|++|....
T Consensus 19 ~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 19 MEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp CSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred CccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 4689999999999999999999999999999999999999999999999 888 9999999997543
No 102
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.25 E-value=5.2e-12 Score=112.37 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=61.2
Q ss_pred CCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 919 aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
++++|+|.+|+|++||.|++||+|+++|+|||+++|+||.+|+|.+++++ +.|..|++|++|..
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 57899999999999999999999999999999999999999999999999 99999999999853
No 103
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=99.25 E-value=6.2e-13 Score=150.82 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred HHHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHH
Q psy3968 990 FCDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLA 1055 (1080)
Q Consensus 990 ~~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1080)
..+.|.+.|+|..+||.+.||. ++++.+++++|+.|.+++..+++- ++. ..|+.+||++++
T Consensus 101 ~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~---~~~--~~~~~~~~~~~~ 175 (337)
T 3ble_A 101 TVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDW---SNG--FRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETH---HHH--HHHCHHHHHHHH
T ss_pred hHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC---CCC--CcCCHHHHHHHH
Confidence 4567888999999999999987 688889999999999999887650 001 369999999999
Q ss_pred HHHHHcCCcEEEEec-CCccCCC
Q psy3968 1056 DELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1056 ~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+++.++|||.|||+| .|+++|.
T Consensus 176 ~~~~~~Ga~~i~l~DT~G~~~P~ 198 (337)
T 3ble_A 176 EHLSKEHIERIFLPDTLGVLSPE 198 (337)
T ss_dssp HHHHTSCCSEEEEECTTCCCCHH
T ss_pred HHHHHcCCCEEEEecCCCCcCHH
Confidence 999999999999999 9999995
No 104
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.24 E-value=1.5e-11 Score=108.74 Aligned_cols=72 Identities=35% Similarity=0.541 Sum_probs=67.2
Q ss_pred CCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 910 AKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 910 ~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.+.+...|.||++|.|.+|+|++||.|++||+|+.||+|||+.+|+||.+|+|.++.+. +.|..|++|+.|+
T Consensus 4 ~~~~~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 4 GKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SCCCSSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CcCCCeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 34566789999999999999999999999999999999999999999999999999988 9999999999874
No 105
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=99.24 E-value=7.9e-12 Score=144.12 Aligned_cols=169 Identities=20% Similarity=0.212 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCc-EEEEeCCCCCCc----CeEEECCHhHHHHHHHHHHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLP-VIFKAAYGGGGR----GMRVVRKMEDVEENFQRASSEAK 153 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfP-vVVKP~~g~Gg~----GV~iv~s~eeL~~a~~~~~~~a~ 153 (1080)
+++.+|++|+++|||+|++ ..+++.+++.++++++||| +|+||..+.||+ ||++++|.+|+.++++.+.....
T Consensus 4 ~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~ 81 (388)
T 2nu8_B 4 HEYQAKQLFARYGLPAPVG--YACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRL 81 (388)
T ss_dssp CHHHHHHHHHHTTCCCCCE--EEESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHCCcCCCCe--eEECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhh
Confidence 6899999999999999998 5789999999999999999 999999876555 99999999999999988754211
Q ss_pred --Hhc-----CCCcEEEeeccCCCcEEEEEEEEecCC--cEEEEE-ee--ecc-ccc---cccEEEEEcCCCCCCHHHHH
Q psy3968 154 --AAF-----GNGAMFIEKFIERPRHIEVQLLGDKAG--NVVHLY-ER--DCS-VQR---RHQKVVEIAPAPHLDINVRN 217 (1080)
Q Consensus 154 --~~~-----g~~~vlVEeyI~G~~ei~v~vl~d~~G--~vv~l~-~r--~~~-~~~---~~~~~~~~~Pa~~l~~~~~~ 217 (1080)
..+ ....++||+|+++.+|+++.++.|... .++.+. .. +.. +.. .......+.|+..+++..
T Consensus 82 ~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~gl~~~~-- 159 (388)
T 2nu8_B 82 VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQ-- 159 (388)
T ss_dssp CCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTBCCHHH--
T ss_pred hccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCCCCHHH--
Confidence 001 124799999999559999999999763 344443 11 111 111 112333366765677654
Q ss_pred HHHHHHHHHHHHcCCcceEE---E-------EEEEcCCCCEEEEEEeccCC
Q psy3968 218 KMTDLAVKLAKHVGYSNAGT---V-------EFLCDESGQFYFIEVNARLQ 258 (1080)
Q Consensus 218 ~l~~~a~~i~~alg~~G~~~---v-------Efivd~dG~~~~iEvNpR~~ 258 (1080)
++++++.+|+.+... . +++.+ . +++++||||++-
T Consensus 160 -----a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~-~-d~~~lEINPl~~ 203 (388)
T 2nu8_B 160 -----GRELAFKLGLEGKLVQQFTKIFMGLATIFLE-R-DLALIEINPLVI 203 (388)
T ss_dssp -----HHHHHHHTTCCTHHHHHHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred -----HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-C-CEEEEEecceEE
Confidence 444445567654210 0 12223 3 599999999874
No 106
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.23 E-value=1.2e-11 Score=119.71 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=61.5
Q ss_pred CCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--e-eeecCceeEEecCCchh
Q psy3968 921 MPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--M-LLRGANAVGYTNYPDNV 986 (1080)
Q Consensus 921 m~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~-~v~~g~~l~~~~~~~~~ 986 (1080)
..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ + .|..|++|++|....+.
T Consensus 40 ~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~~~ 108 (128)
T 1y8o_B 40 TMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEAD 108 (128)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSGGG
T ss_pred ccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCccc
Confidence 569999999999999999999999999999999999999999999999 7 79999999999765443
No 107
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=99.23 E-value=7.6e-12 Score=144.36 Aligned_cols=169 Identities=16% Similarity=0.215 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCC-cEEEEeC--CCCCCcC---------eEEECCHhHHHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGL-PVIFKAA--YGGGGRG---------MRVVRKMEDVEENFQ 146 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igf-PvVVKP~--~g~Gg~G---------V~iv~s~eeL~~a~~ 146 (1080)
+++.+|++|+++|||+|++ ..+.+.+++.++++++|| |+|+||. .|+.|+| |++++|.+|+.++++
T Consensus 4 ~E~~aK~lL~~~GIpvp~~--~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~ 81 (395)
T 2fp4_B 4 QEYQSKKLMSDNGVKVQRF--FVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAK 81 (395)
T ss_dssp CHHHHHHHHHHTTCCCCCE--EEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCe--EEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHH
Confidence 5789999999999999999 578999999999999999 8999995 4554444 999999999999988
Q ss_pred HHHHHH--HHhc---C--CCcEEEeeccCCCcEEEEEEEEecCC--cEEEEE-eeeccccc----cccEEEE--EcCCCC
Q psy3968 147 RASSEA--KAAF---G--NGAMFIEKFIERPRHIEVQLLGDKAG--NVVHLY-ERDCSVQR----RHQKVVE--IAPAPH 210 (1080)
Q Consensus 147 ~~~~~a--~~~~---g--~~~vlVEeyI~G~~ei~v~vl~d~~G--~vv~l~-~r~~~~~~----~~~~~~~--~~Pa~~ 210 (1080)
++.... ...+ | ...++||+|++..+|+++.++.|... .++.++ ...+.+.. ....+.. +.|...
T Consensus 82 ~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~ 161 (395)
T 2fp4_B 82 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEG 161 (395)
T ss_dssp TTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTC
T ss_pred HHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCC
Confidence 775421 0011 1 24699999999669999999999763 344443 22222221 1223333 345445
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcceEEE----------EEEEcCCCCEEEEEEeccCC
Q psy3968 211 LDINVRNKMTDLAVKLAKHVGYSNAGTV----------EFLCDESGQFYFIEVNARLQ 258 (1080)
Q Consensus 211 l~~~~~~~l~~~a~~i~~alg~~G~~~v----------Efivd~dG~~~~iEvNpR~~ 258 (1080)
+++ ..++++++.+|+.+...- +++.+ . +++++||||++-
T Consensus 162 l~~-------~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~-~-d~~~lEINPl~~ 210 (395)
T 2fp4_B 162 IKD-------SQAQRMAENLGFLGPLQNQAADQIKKLYNLFLK-I-DATQVEVNPFGE 210 (395)
T ss_dssp CCH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH-T-TEEEEEEEEEEE
T ss_pred CCH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhh-C-CeEEEEeeeEEE
Confidence 665 456777777888653211 11223 3 599999999874
No 108
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.21 E-value=2.5e-11 Score=106.28 Aligned_cols=68 Identities=40% Similarity=0.576 Sum_probs=64.6
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
...|.||++|+|.+|+|++||.|++||+|+.+|+|||..+|+||.+|+|.++.+. +.|..|++|+.|+
T Consensus 5 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CCEEECSSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CeEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4579999999999999999999999999999999999999999999999999988 9999999999873
No 109
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.20 E-value=7.6e-12 Score=111.86 Aligned_cols=67 Identities=24% Similarity=0.341 Sum_probs=63.3
Q ss_pred ccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
+.++++|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++.++ +.|..|++|++|..+
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999 999999999998654
No 110
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.20 E-value=1.1e-11 Score=160.74 Aligned_cols=70 Identities=27% Similarity=0.337 Sum_probs=66.6
Q ss_pred CCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 911 KSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 911 ~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
+.+...|.|||+|+|++|+|++||+|++||+|++|||||||++|+||.+|+|++|+++ +.|+.|++|++|
T Consensus 1164 ~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1164 PDDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CTTCEEEECSSCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCCcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 4455679999999999999999999999999999999999999999999999999999 999999999987
No 111
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.19 E-value=1.1e-11 Score=109.59 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=61.1
Q ss_pred cCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 918 GAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 918 ~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.+|++|+|.+|+|++||.|++||+|+.||+|||+.+|+||.+|+|.++.++ +.|..|++|++|.
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 367999999999999999999999999999999999999999999999999 9999999999874
No 112
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.19 E-value=5e-12 Score=116.39 Aligned_cols=70 Identities=30% Similarity=0.446 Sum_probs=33.4
Q ss_pred CCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 911 KSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 911 ~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
+.+...|.||++|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|.++.+. +.|..|++|++|
T Consensus 22 ~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i 93 (94)
T 2jku_A 22 SMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVEL 93 (94)
T ss_dssp --CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-----------------------------------
T ss_pred CCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEE
Confidence 3455679999999999999999999999999999999999999999999999999988 999999999876
No 113
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.19 E-value=4.3e-11 Score=111.26 Aligned_cols=72 Identities=32% Similarity=0.429 Sum_probs=67.6
Q ss_pred CCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 912 SVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 912 ~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
.+...|.||++|+|.+|+|++||.|++||+|+.||+|||+.+|+||.+|+|.++.+. +.|..|++|++|...
T Consensus 12 ~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~ 85 (99)
T 2ejm_A 12 ETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEE 85 (99)
T ss_dssp SCCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCC
T ss_pred CCceEEecCCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECC
Confidence 456679999999999999999999999999999999999999999999999999998 999999999999643
No 114
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=99.16 E-value=1.3e-11 Score=137.94 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=74.5
Q ss_pred HHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.+.|.+.|+|..+||++.+|. +.++.+++.+|+.|.++++.|+|+.+ .|....++.+|++++++
T Consensus 86 i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~--~~~~~~~~~~~~~~~~~ 163 (298)
T 2cw6_A 86 FEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALG--CPYEGKISPAKVAEVTK 163 (298)
T ss_dssp HHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTC--BTTTBSCCHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEee--CCcCCCCCHHHHHHHHH
Confidence 457888999999999999987 35577899999999999999999975 33334689999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++.++|||.|+|+| .|+++|.
T Consensus 164 ~~~~~Ga~~i~l~DT~G~~~P~ 185 (298)
T 2cw6_A 164 KFYSMGCYEISLGDTIGVGTPG 185 (298)
T ss_dssp HHHHTTCSEEEEEETTSCCCHH
T ss_pred HHHHcCCCEEEecCCCCCcCHH
Confidence 99999999999999 9999985
No 115
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=99.16 E-value=1.8e-11 Score=136.05 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCChhhhccccCCccC--------------hHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHH
Q psy3968 987 VYKFCDLSVQVGMDVFRVFDSLNYLPN--------------LILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQ 1052 (1080)
Q Consensus 987 ~~~~~~~a~~~gid~~~v~~~ln~~~n--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1080)
++++.+..++.|++..++|.+.+|+.| ++.+++.+|+.|..++.++.|.+ .++.+|++
T Consensus 82 i~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~--------~~~~~~~~ 153 (293)
T 3ewb_X 82 IDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDAT--------RSDRAFLI 153 (293)
T ss_dssp HHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGG--------GSCHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCC--------CCCHHHHH
Confidence 456555556689999999999999874 57788899999999987776543 69999999
Q ss_pred HHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1053 NLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1053 ~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++++.++||++|||+| .|+++|.
T Consensus 154 ~~~~~~~~~G~~~i~l~DT~G~~~P~ 179 (293)
T 3ewb_X 154 EAVQTAIDAGATVINIPDTVGYTNPT 179 (293)
T ss_dssp HHHHHHHHTTCCEEEEECSSSCCCHH
T ss_pred HHHHHHHHcCCCEEEecCCCCCCCHH
Confidence 999999999999999999 9999995
No 116
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=99.15 E-value=4.3e-11 Score=133.91 Aligned_cols=87 Identities=18% Similarity=0.111 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHH
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNL 1054 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1080)
+..+.|.+.|++..+||++.+|+ +.++.+++.+|+.|..+|+.|+|+.+. |....++.+|++++
T Consensus 87 ~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~--e~~~~~~~~~~~~~ 164 (302)
T 2ftp_A 87 KGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGC--PYDGDVDPRQVAWV 164 (302)
T ss_dssp HHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCB--TTTBCCCHHHHHHH
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC--CcCCCCCHHHHHHH
Confidence 44567888999999999999997 345888999999999999999999752 22346999999999
Q ss_pred HHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1055 ADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1055 ~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++.++|+|.|+|+| .|+++|.
T Consensus 165 ~~~~~~~G~d~i~l~DT~G~~~P~ 188 (302)
T 2ftp_A 165 ARELQQMGCYEVSLGDTIGVGTAG 188 (302)
T ss_dssp HHHHHHTTCSEEEEEESSSCCCHH
T ss_pred HHHHHHcCCCEEEEeCCCCCcCHH
Confidence 9999999999999999 9999885
No 117
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.13 E-value=4.3e-12 Score=113.24 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=60.5
Q ss_pred CCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 919 aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
+..+|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ +.|..|++|++|..
T Consensus 13 ~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 13 SVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 35789999999999999999999999999999999999999999999999 99999999998753
No 118
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.13 E-value=2.5e-11 Score=131.85 Aligned_cols=197 Identities=16% Similarity=0.142 Sum_probs=130.0
Q ss_pred CCCEEEeCCC--cccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCCCCCCCCH----------
Q psy3968 38 DVDAIHPGYG--FLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTT---------- 105 (1080)
Q Consensus 38 ~iDaVipg~g--~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~~~~v~s~---------- 105 (1080)
-+|.+++-|+ |-. ....+.++..+..+ -|+..+...++||....++|+++|||+|++.. +...
T Consensus 57 ~~d~lisf~s~gfpl--~kai~y~~lr~p~~-INd~~~q~~~~DK~~~~~iL~~~gIPtP~t~~--~~rd~~~~~~~~~~ 131 (330)
T 3t7a_A 57 LCDCLISFHSKGFPL--DKAVAYAKLRNPFV-INDLNMQYLIQDRREVYSILQAEGILLPRYAI--LNRDPNNPKECNLI 131 (330)
T ss_dssp CCSEEEECCCTTCCH--HHHHHHHHHHCCEE-SBCSTHHHHHTBHHHHHHHHHHTTCCCCCEEE--ECCBTTBGGGSSEE
T ss_pred cCCEEEEeccCCCcH--HHHHHHHHHhCCce-eCCHHHHHHHHHHHHHHHHHHHcCCCCCCEEE--EeCCCCCcccccee
Confidence 4788888764 433 23445555566544 59999999999999999999999999999852 3321
Q ss_pred --HHHHH-HHHHhCCcEEEEeCCCC-----------CCcC----eEEECCHhHH---HHHHHHHHHHHHHhcCCCcEEEe
Q psy3968 106 --EEAME-FCLKYGLPVIFKAAYGG-----------GGRG----MRVVRKMEDV---EENFQRASSEAKAAFGNGAMFIE 164 (1080)
Q Consensus 106 --ee~~~-~~~~igfPvVVKP~~g~-----------Gg~G----V~iv~s~eeL---~~a~~~~~~~a~~~~g~~~vlVE 164 (1080)
++..+ ....+++|+|+||..|. .|-| ++++.|.+.. +..+ -.+..+++|
T Consensus 132 e~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v----------r~~~~~i~Q 201 (330)
T 3t7a_A 132 EGEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV----------RKTGSYIYE 201 (330)
T ss_dssp ECSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC----------CSSSCEEEE
T ss_pred ccchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh----------ccCCcEEEE
Confidence 11111 22446799999999996 2333 4455544332 1111 115689999
Q ss_pred eccCC-CcEEEEEEEEecCCcEEEEEeeecc----ccccccEEEEE-cCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Q psy3968 165 KFIER-PRHIEVQLLGDKAGNVVHLYERDCS----VQRRHQKVVEI-APAPHLDINVRNKMTDLAVKLAKHVGYSNAGTV 238 (1080)
Q Consensus 165 eyI~G-~~ei~v~vl~d~~G~vv~l~~r~~~----~~~~~~~~~~~-~Pa~~l~~~~~~~l~~~a~~i~~alg~~G~~~v 238 (1080)
|||+- .+.+.+-+++ +++++...|... ..+++....+. .|. .+++ +.+++|.++++++|.. .+.|
T Consensus 202 EFI~~~G~DIRv~vVG---~~vv~Am~R~sp~~~G~~r~N~~gG~~~~~v-~Lt~----eek~iA~kaa~a~G~~-v~GV 272 (330)
T 3t7a_A 202 EFMPTDGTDVKVYTVG---PDYAHAEARKSPALDGKVERDSEGKEVRYPV-ILNA----REKLIAWKVCLAFKQT-VCGF 272 (330)
T ss_dssp ECCCCSSEEEEEEEES---TTCEEEEEEECTTSSCBCCBCTTSCBCCEEC-CCCH----HHHHHHHHHHHHTTBS-EEEE
T ss_pred eccCCCCceEEEEEEC---CEEEEEEEEeCCCCCCcEEEcCCCCceeeee-cCCH----HHHHHHHHHHHHhCCc-eEEE
Confidence 99972 2778777774 367776666432 11222212221 243 4665 5678999999999996 4559
Q ss_pred EEEEcCCCCEEEEEEeccCCC
Q psy3968 239 EFLCDESGQFYFIEVNARLQV 259 (1080)
Q Consensus 239 Efivd~dG~~~~iEvNpR~~g 259 (1080)
|++.+.+| +|++|+|.+...
T Consensus 273 DlLrs~~~-~~V~EVNg~~fv 292 (330)
T 3t7a_A 273 DLLRANGQ-SYVCDVNGFSFV 292 (330)
T ss_dssp EEEEETTE-EEEEEEEESCCC
T ss_pred EEEEECCc-cEEEEeCCCccc
Confidence 99998654 899999999877
No 119
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.12 E-value=1.1e-11 Score=144.39 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=0.0
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
.|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.+++++ +.|..|++|++|.
T Consensus 16 eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (428)
T 3dva_I 16 EGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77 (428)
T ss_dssp --------------------------------------------------------------
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 39999999999999999999999999999999999999999999999 9999999999995
No 120
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.12 E-value=8.8e-11 Score=104.62 Aligned_cols=62 Identities=31% Similarity=0.389 Sum_probs=60.0
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
+|+|.+|+|++||.|++||+|++||+|||+.+|+||.+|+|.++.++ +.|..|++|++|..+
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999 999999999999754
No 121
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=99.10 E-value=4e-11 Score=135.06 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=62.6
Q ss_pred HcCCChhhhccccCCccC--------------hHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc
Q psy3968 996 QVGMDVFRVFDSLNYLPN--------------LILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKA 1061 (1080)
Q Consensus 996 ~~gid~~~v~~~ln~~~n--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1080)
..|++..++|++.||+.| ++.+++++|+.|..++...-|. ..++++||+++++++.++
T Consensus 92 ~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~--------~~~~~~~~~~~~~~~~~~ 163 (325)
T 3eeg_A 92 FAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDA--------GRADQAFLARMVEAVIEA 163 (325)
T ss_dssp TCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETG--------GGSCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEcccc--------ccchHHHHHHHHHHHHhc
Confidence 339999999999999864 4578999999999865333222 369999999999999999
Q ss_pred CCcEEEEec-CCccCCC
Q psy3968 1062 GTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1062 g~~~~~~kd-~~~~~p~ 1077 (1080)
||++|||+| .|+++|.
T Consensus 164 G~~~i~l~DT~G~~~P~ 180 (325)
T 3eeg_A 164 GADVVNIPDTTGYMLPW 180 (325)
T ss_dssp TCSEEECCBSSSCCCHH
T ss_pred CCCEEEecCccCCcCHH
Confidence 999999999 9999995
No 122
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.09 E-value=1.1e-11 Score=111.91 Aligned_cols=68 Identities=31% Similarity=0.395 Sum_probs=64.2
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCC
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYP 983 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~ 983 (1080)
.|.+|+.|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++.+. +.|..|++|++|...
T Consensus 4 ~i~~p~~G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CCCCCSCCCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred EEECCCeEEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 46788889999999999999999999999999999999999999999999999 999999999999643
No 123
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.08 E-value=1.3e-10 Score=103.19 Aligned_cols=62 Identities=35% Similarity=0.433 Sum_probs=58.9
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
+ +|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++.+. +.|..|++|+.|...+
T Consensus 13 ~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 13 G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 6 899999999999999999999999999999999999999999999 9999999999986543
No 124
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.08 E-value=2.2e-11 Score=129.82 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred CCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--ee-eecCceeEEec
Q psy3968 921 MPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--ML-LRGANAVGYTN 981 (1080)
Q Consensus 921 m~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~-v~~g~~l~~~~ 981 (1080)
..|+|++|+|++||.|++||+|++||+|||+++|.||.+|+|.+++++ +. |..|++|++|.
T Consensus 16 ~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 16 EEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 359999999999999999999999999999999999999999999999 75 99999999984
No 125
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=99.07 E-value=1e-10 Score=130.50 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=75.0
Q ss_pred HHHHHHcCCChhhhccccC--------------CccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHH
Q psy3968 991 CDLSVQVGMDVFRVFDSLN--------------YLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLAD 1056 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~~~ln--------------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1080)
.+.|.+.|++..+||++.+ .+++++.+++.+|+.|..+|+.|+|+.+. |....++.+|++++++
T Consensus 85 i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~--e~~~~~~~~~~~~~~~ 162 (295)
T 1ydn_A 85 YEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVEC--PYDGPVTPQAVASVTE 162 (295)
T ss_dssp HHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEE--TTTEECCHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecC--CcCCCCCHHHHHHHHH
Confidence 4568889999999999887 77888999999999999999999999642 2234799999999999
Q ss_pred HHHHcCCcEEEEec-CCccCCC
Q psy3968 1057 ELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1057 ~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
.+.++|+|.|+|+| .|+++|.
T Consensus 163 ~~~~~G~d~i~l~Dt~G~~~P~ 184 (295)
T 1ydn_A 163 QLFSLGCHEVSLGDTIGRGTPD 184 (295)
T ss_dssp HHHHHTCSEEEEEETTSCCCHH
T ss_pred HHHhcCCCEEEecCCCCCcCHH
Confidence 99999999999999 9999984
No 126
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=99.00 E-value=8.6e-10 Score=127.41 Aligned_cols=108 Identities=23% Similarity=0.337 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCc----CeEEECCHhHHHHHHHHHHHHHHH
Q psy3968 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGR----GMRVVRKMEDVEENFQRASSEAKA 154 (1080)
Q Consensus 79 DK~~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~----GV~iv~s~eeL~~a~~~~~~~a~~ 154 (1080)
+-+.+|++|+++|||+|++ ..+++.+++.++++++|||+|+||....||+ ||++++|.+|+.++++++......
T Consensus 4 ~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~ 81 (397)
T 3ufx_B 4 HEYQAKEILARYGVPVPPG--KVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIK 81 (397)
T ss_dssp CHHHHHHHHHHTTCCCCCE--EEESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEET
T ss_pred CHHHHHHHHHHCCCCCCCe--EEECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhcc
Confidence 4568899999999999999 5789999999999999999999999865555 999999999999999887542111
Q ss_pred hcCCCcEEEeeccCCCcEEEEEEEEecCCc-EEEE
Q psy3968 155 AFGNGAMFIEKFIERPRHIEVQLLGDKAGN-VVHL 188 (1080)
Q Consensus 155 ~~g~~~vlVEeyI~G~~ei~v~vl~d~~G~-vv~l 188 (1080)
.+..+.++||+|+++.+|+.+.++.|.... .+.+
T Consensus 82 g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~ 116 (397)
T 3ufx_B 82 GLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLM 116 (397)
T ss_dssp TEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEE
T ss_pred CCccceEEEEEeecCCeeEEEEEEecCCCCCcEEE
Confidence 112357999999995599999999997644 4443
No 127
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=98.94 E-value=1.1e-10 Score=133.53 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCChhhhccccCCccC--------------hHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHH
Q psy3968 987 VYKFCDLSVQVGMDVFRVFDSLNYLPN--------------LILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQ 1052 (1080)
Q Consensus 987 ~~~~~~~a~~~gid~~~v~~~ln~~~n--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1052 (1080)
++++.+..+..|++..++|.+.+|+.+ +..+++++|+.|..++...- ....++++|++
T Consensus 89 i~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~e--------d~~r~~~~~~~ 160 (370)
T 3rmj_A 89 IRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCE--------DALRSEIDFLA 160 (370)
T ss_dssp HHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEE--------TGGGSCHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecC--------CCCccCHHHHH
Confidence 344444444589999999999999865 34477788889887643322 22479999999
Q ss_pred HHHHHHHHcCCcEEEEec-CCccCCC
Q psy3968 1053 NLADELVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1053 ~~~~~~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
++++.+.++||+.|+|+| .|+++|.
T Consensus 161 ~~~~~~~~~Ga~~i~l~DT~G~~~P~ 186 (370)
T 3rmj_A 161 EICGAVIEAGATTINIPDTVGYSIPY 186 (370)
T ss_dssp HHHHHHHHHTCCEEEEECSSSCCCHH
T ss_pred HHHHHHHHcCCCEEEecCccCCcCHH
Confidence 999999999999999999 9999995
No 128
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.94 E-value=3.1e-10 Score=110.56 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=61.2
Q ss_pred cccCCCCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEe---eee--eeee---cCc-eeEEecCCc
Q psy3968 916 QVGAPMPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI---DAS--MLLR---GAN-AVGYTNYPD 984 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~---~~~--~~v~---~g~-~l~~~~~~~ 984 (1080)
.+.+|++|.|+.+.+ ++||+|++||++++||||||+++|.||++|+|.++ ++. +.|. .|+ .|+.|...+
T Consensus 38 ~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 38 NHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred hhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEECC
Confidence 467899999999988 99999999999999999999999999999999999 444 8887 777 888887444
No 129
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.65 E-value=9.8e-09 Score=99.56 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=58.7
Q ss_pred ccCCCCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eeee---cCc-eeEEecCCc
Q psy3968 917 VGAPMPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLLR---GAN-AVGYTNYPD 984 (1080)
Q Consensus 917 v~aPm~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v~---~g~-~l~~~~~~~ 984 (1080)
...|+.|.|+.+.+ ++||+|++||++++||||||+++|.||++|+|.++.+. +.|. .|+ -|+.|...+
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTS 107 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESS
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEECC
Confidence 56789999999988 99999999999999999999999999999999999877 4564 344 788776444
No 130
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.65 E-value=3.2e-08 Score=94.51 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=65.2
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCce-----------------------------eEecCCCeEEeEee
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEM-----------------------------VVQAPVQGVVKSID 966 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~-----------------------------~i~a~~~G~v~~~~ 966 (1080)
.|.||++|+|.+|+|++||.|++||+|+.|++.+.+. .|+||.+|+|.++.
T Consensus 3 ~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~ 82 (116)
T 2k32_A 3 IIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDAL 82 (116)
T ss_dssp EECCSSCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCS
T ss_pred EEeCcCCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEE
Confidence 4789999999999999999999999999999998775 99999999999999
Q ss_pred ee--eeeecC-ceeEEecCCchh
Q psy3968 967 AS--MLLRGA-NAVGYTNYPDNV 986 (1080)
Q Consensus 967 ~~--~~v~~g-~~l~~~~~~~~~ 986 (1080)
+. +.|..| ++|+.|...+..
T Consensus 83 ~~~G~~v~~g~~~l~~i~~~~~~ 105 (116)
T 2k32_A 83 VNIGDYVSASTTELVRVTNLNPI 105 (116)
T ss_dssp CCTTCEECTTTSCCEEEECSCTH
T ss_pred CCCCCEEcCCCcEEEEEECCCeE
Confidence 98 999998 999999766654
No 131
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.54 E-value=3.2e-08 Score=95.68 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eee---ecCc-eeEEecCCc
Q psy3968 917 VGAPMPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLL---RGAN-AVGYTNYPD 984 (1080)
Q Consensus 917 v~aPm~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v---~~g~-~l~~~~~~~ 984 (1080)
..+|+.|.|+.+.+ ++||+|++||++++||||||.++|.||++|+|.++.+. +.| ..|+ -|+.|...+
T Consensus 30 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~~ 107 (128)
T 1onl_A 30 YAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp HHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEESC
T ss_pred HHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEECC
Confidence 55688999999977 99999999999999999999999999999999999876 555 4555 788776444
No 132
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.52 E-value=4e-08 Score=94.96 Aligned_cols=69 Identities=20% Similarity=0.289 Sum_probs=59.0
Q ss_pred cccCCCCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eeee---cCc-eeEEecCCc
Q psy3968 916 QVGAPMPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLLR---GAN-AVGYTNYPD 984 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v~---~g~-~l~~~~~~~ 984 (1080)
....|+.|.|+.+.+ ++||+|++||++++||||||.++|.||++|+|.++... +.|. .|+ -|+.|...+
T Consensus 30 d~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~ 108 (128)
T 3a7l_A 30 EHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD 108 (128)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred hHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECC
Confidence 356788999999977 99999999999999999999999999999999999876 5565 555 787776444
No 133
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=98.42 E-value=2.1e-07 Score=107.43 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=62.8
Q ss_pred HHHHHcCCChhhhccccCCc--------------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHH
Q psy3968 992 DLSVQVGMDVFRVFDSLNYL--------------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADE 1057 (1080)
Q Consensus 992 ~~a~~~gid~~~v~~~ln~~--------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1080)
+.|.+.|++..+||.+-.|. +.+..+++.+|+.|..++..+.... .++.+|++++++.
T Consensus 117 ~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~--------r~d~~~~~~v~~~ 188 (423)
T 3ivs_A 117 RVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSF--------RSDLVDLLSLYKA 188 (423)
T ss_dssp HHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEESGG--------GSCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCc--------CCCHHHHHHHHHH
Confidence 46777899999999776653 3455678889999999887765332 4899999999999
Q ss_pred HHHcCCcEEEEec-CCccCCC
Q psy3968 1058 LVKAGTHVLCIKV-RILLSPV 1077 (1080)
Q Consensus 1058 ~~~~g~~~~~~kd-~~~~~p~ 1077 (1080)
+.++||+.|+|+| .|+++|.
T Consensus 189 ~~~~Ga~~i~l~DTvG~~~P~ 209 (423)
T 3ivs_A 189 VDKIGVNRVGIADTVGCATPR 209 (423)
T ss_dssp HHHHCCSEEEEEETTSCCCHH
T ss_pred HHHhCCCccccCCccCcCCHH
Confidence 9999999999999 9999994
No 134
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.88 E-value=1.4e-05 Score=76.43 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=45.0
Q ss_pred CCCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 920 PMPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 920 Pm~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
.+.|.|+-+.+ ++|++|++||++++||+|||.++|.||++|+|.++...
T Consensus 29 ~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~ 78 (125)
T 3klr_A 29 EALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA 78 (125)
T ss_dssp HHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred hhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhh
Confidence 45688998877 79999999999999999999999999999999999776
No 135
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.65 E-value=5.1e-05 Score=73.85 Aligned_cols=65 Identities=28% Similarity=0.347 Sum_probs=51.6
Q ss_pred CCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eee---ecC-ceeEEecCCch
Q psy3968 921 MPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLL---RGA-NAVGYTNYPDN 985 (1080)
Q Consensus 921 m~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v---~~g-~~l~~~~~~~~ 985 (1080)
.-|.|+-+-+ ++|++|++||++++||+||+..+|.||++|+|.++.-. +.| ..| .=|+.|...++
T Consensus 52 ~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~~d~ 126 (143)
T 3mxu_A 52 QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDE 126 (143)
T ss_dssp HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEECSCT
T ss_pred hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEECCH
Confidence 4578888765 89999999999999999999999999999999999876 222 222 35666665443
No 136
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.62 E-value=4.3e-05 Score=74.10 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=44.5
Q ss_pred CCCCeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee
Q psy3968 919 APMPGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968 (1080)
Q Consensus 919 aPm~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~ 968 (1080)
..+-|.|+-+.+ ++|++|++||++++||+||+..+|.||++|+|.++...
T Consensus 45 q~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~ 95 (137)
T 3tzu_A 45 VEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA 95 (137)
T ss_dssp HHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred HhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence 345688888865 89999999999999999999999999999999998765
No 137
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=97.47 E-value=0.00079 Score=76.58 Aligned_cols=155 Identities=20% Similarity=0.320 Sum_probs=86.4
Q ss_pred CCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC-------c--EEEEEEEEecCCcEE
Q psy3968 116 GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERP-------R--HIEVQLLGDKAGNVV 186 (1080)
Q Consensus 116 gfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~-------~--ei~v~vl~d~~G~vv 186 (1080)
+.++|+||..++.|+|++++++.+++.+.++.. ...++||+||+.| + ++.+-++....-. +
T Consensus 147 ~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---------~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts~l~-v 216 (380)
T 3tig_A 147 GNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDNQYN-I 216 (380)
T ss_dssp CCCEEEEESCC----CCBCCSCSHHHHHHHHHH---------TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECTTCC-E
T ss_pred CCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---------CCcEEEEecccCceeecCCCceeEEEEEEEEcCCCE-E
Confidence 579999999999999999999999988766431 4579999999742 3 3344444332111 1
Q ss_pred EEE----eeeccc-------------------cccccE-EEEEcCCC---------------CC--CHHHHHHHHHHHHH
Q psy3968 187 HLY----ERDCSV-------------------QRRHQK-VVEIAPAP---------------HL--DINVRNKMTDLAVK 225 (1080)
Q Consensus 187 ~l~----~r~~~~-------------------~~~~~~-~~~~~Pa~---------------~l--~~~~~~~l~~~a~~ 225 (1080)
.++ -|-|+. +..+.. ........ .. ...+..+|.+++..
T Consensus 217 y~y~~g~~Rfa~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~ 296 (380)
T 3tig_A 217 YLYREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRV 296 (380)
T ss_dssp EECSCCEEEECC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHH
T ss_pred EEEcCCEEEecCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 111 111110 000000 00000000 01 12344566666655
Q ss_pred HHHH----cC-----C--cceEEEEEEEcCCCCEEEEEEeccCCCCccchhcccCCCHHHHHHHHHcCCCC
Q psy3968 226 LAKH----VG-----Y--SNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTL 285 (1080)
Q Consensus 226 i~~a----lg-----~--~G~~~vEfivd~dG~~~~iEvNpR~~g~~~~~e~~tGvdl~~~~l~~alG~~l 285 (1080)
.+.+ +. . -....+||++|.+.++|+||||..++-...++ -++++..++++..-=+
T Consensus 297 ~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q~~i-----~~l~~~~~~iavdp~f 362 (380)
T 3tig_A 297 CLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLY-----AELCKGIVDLAISSVF 362 (380)
T ss_dssp HHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCTTTH-----HHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccHHhH-----HHHHHHHHHHhccccc
Confidence 5543 21 2 24677999999999999999999987643332 2367777777766533
No 138
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.39 E-value=5.7e-05 Score=82.91 Aligned_cols=70 Identities=19% Similarity=0.357 Sum_probs=60.5
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC---------------------------------------------
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK--------------------------------------------- 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK--------------------------------------------- 949 (1080)
..|.||.+|.|.+++|++||.|++||+|+.|+.-.
T Consensus 23 ~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~ 102 (277)
T 2f1m_A 23 AEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQ 102 (277)
T ss_dssp EEECCSSCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHH
T ss_pred EEEEccccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 46889999999999999999999999999998631
Q ss_pred --------------------------CceeEecCCCeEEeEeeee--eeeecC--ceeEEecCCc
Q psy3968 950 --------------------------MEMVVQAPVQGVVKSIDAS--MLLRGA--NAVGYTNYPD 984 (1080)
Q Consensus 950 --------------------------m~~~i~a~~~G~v~~~~~~--~~v~~g--~~l~~~~~~~ 984 (1080)
-...|+||.+|+|..+.+. +.|..| ++|+.|...+
T Consensus 103 a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 103 ALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLD 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecCC
Confidence 1248999999999999998 999999 5899886444
No 139
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.36 E-value=0.00016 Score=82.31 Aligned_cols=72 Identities=18% Similarity=0.381 Sum_probs=62.8
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCC-------------------------------------------
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKM------------------------------------------- 950 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm------------------------------------------- 950 (1080)
...|.||.+|.|.+++|++||.|++||+|+.|+.-..
T Consensus 57 ~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~ 136 (359)
T 3lnn_A 57 LVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQS 136 (359)
T ss_dssp EEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHH
T ss_pred EEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3568999999999999999999999999999987532
Q ss_pred ---------------------------------ceeEecCCCeEEeEeeee--eeeec-CceeEEecCCch
Q psy3968 951 ---------------------------------EMVVQAPVQGVVKSIDAS--MLLRG-ANAVGYTNYPDN 985 (1080)
Q Consensus 951 ---------------------------------~~~i~a~~~G~v~~~~~~--~~v~~-g~~l~~~~~~~~ 985 (1080)
...|+||.+|+|..+.+. +.|.. |++|+.|...+.
T Consensus 137 ~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~~~ 207 (359)
T 3lnn_A 137 DYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADLSH 207 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECCSE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecCCe
Confidence 257999999999999999 88998 999999975554
No 140
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.33 E-value=0.00024 Score=82.74 Aligned_cols=70 Identities=30% Similarity=0.456 Sum_probs=61.4
Q ss_pred CcccCCCCeEEEEEEe-cCCCeeecCCEEEEEEc----------------------------------------------
Q psy3968 915 GQVGAPMPGSVMEIRV-KVGDKVEKGAALVVLSA---------------------------------------------- 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v-~~G~~V~~g~~~~~iea---------------------------------------------- 947 (1080)
..|.|+.+|.|.+++| ++||.|++||+|+.|++
T Consensus 122 ~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~ 201 (413)
T 3ne5_B 122 AIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIAT 201 (413)
T ss_dssp EEECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3588999999999999 99999999999999994
Q ss_pred --cCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 948 --MKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 948 --mKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
..-...|+||.+|+|.++.+. +.|..|++|+.|...+
T Consensus 202 ~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~~ 242 (413)
T 3ne5_B 202 QKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 242 (413)
T ss_dssp TSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEEEEE
T ss_pred ccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCCC
Confidence 122458999999999999999 9999999999996444
No 141
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.31 E-value=0.00016 Score=81.71 Aligned_cols=35 Identities=34% Similarity=0.512 Sum_probs=31.9
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
...|.+|.+|.|.+++|++||.|++||+|+.|+.-
T Consensus 31 ~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 31 KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 34688999999999999999999999999999873
No 142
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.16 E-value=0.0006 Score=77.61 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=58.7
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEcc----CCceeEecCCCeEEeEeeeeeeeecCceeEEec
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM----KMEMVVQAPVQGVVKSIDASMLLRGANAVGYTN 981 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam----Km~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~ 981 (1080)
-++||+.| +++..|+.||.|++||+|+.++.| +++.+|.||.+|+|........|..|+.|+.|.
T Consensus 269 ~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~~~~V~~Gd~l~~ia 337 (354)
T 3cdx_A 269 YVMAPRTG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGDAVAVVM 337 (354)
T ss_dssp EEECSSCE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECSSEECTTCEEEEEE
T ss_pred EEECCCCE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeCCCccCCCCEEEEEe
Confidence 36789999 778889999999999999999997 899999999999998887668999999999985
No 143
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.12 E-value=0.00053 Score=67.53 Aligned_cols=63 Identities=17% Similarity=0.243 Sum_probs=50.0
Q ss_pred CeEEEEEEe-cCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee-----eeee---cC-ceeEEecCCc
Q psy3968 922 PGSVMEIRV-KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS-----MLLR---GA-NAVGYTNYPD 984 (1080)
Q Consensus 922 ~G~v~~~~v-~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~-----~~v~---~g-~~l~~~~~~~ 984 (1080)
-|.|+-|-+ ++|++|++|+++++||++|...+|.||++|+|.++.-. +.|. .| .=|+.|...+
T Consensus 58 LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~~d 130 (155)
T 3hgb_A 58 LGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDS 130 (155)
T ss_dssp HCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEECCT
T ss_pred cCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEECC
Confidence 477777754 78999999999999999999999999999999999876 2232 22 3666666544
No 144
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.05 E-value=0.00026 Score=81.17 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=61.0
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCC--------------------------------------------
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKM-------------------------------------------- 950 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm-------------------------------------------- 950 (1080)
..|.|+.+|.|.+++|++||.|++||+|+.|+.-..
T Consensus 44 ~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~ 123 (369)
T 1vf7_A 44 AEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQ 123 (369)
T ss_dssp EEECCSSCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred EEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999975321
Q ss_pred -------------ceeEecCCCeEEeEeeee--eeeecC--ceeEEecCCch
Q psy3968 951 -------------EMVVQAPVQGVVKSIDAS--MLLRGA--NAVGYTNYPDN 985 (1080)
Q Consensus 951 -------------~~~i~a~~~G~v~~~~~~--~~v~~g--~~l~~~~~~~~ 985 (1080)
...|+||.+|+|..+.+. +.|..| ++|+.|...++
T Consensus 124 a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~~~ 175 (369)
T 1vf7_A 124 SKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLDP 175 (369)
T ss_dssp HHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECCSE
T ss_pred HHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecCCe
Confidence 258999999999999998 999995 89999865543
No 145
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.92 E-value=0.0016 Score=73.30 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=60.0
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc----CCceeEecCCCeEEeEeeeeeeeecCceeEEecC
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM----KMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNY 982 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam----Km~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~~ 982 (1080)
...-|.||..| +++-+|+.||.|++||+|+.|..+ +.+.+|+||.+|+|......-.|..|+.|+.|..
T Consensus 256 ~~~~v~A~~~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~~~V~~G~~l~~Ia~ 328 (331)
T 3na6_A 256 GDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGDCAAVIGV 328 (331)
T ss_dssp SCCCEECSSCE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECSSEECTTCEEEEEEC
T ss_pred CcEEEeCCCCe-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCCCccCCCCEEEEEec
Confidence 44568999999 555689999999999999999997 5689999999999988777688999999998854
No 146
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=96.86 E-value=0.0011 Score=66.34 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCCCCcccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEe---------------------
Q psy3968 911 KSVPGQVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSI--------------------- 965 (1080)
Q Consensus 911 ~~~~~~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~--------------------- 965 (1080)
+.++..|.||+.|+|+.+ .+..|.|-. |+.+++..+ +..++||++|+|+.+
T Consensus 9 p~~~~~i~aP~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHI 84 (162)
T 1ax3_A 9 EIGEEVFVSPITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHF 84 (162)
T ss_dssp TTCCSSCCCCCSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEEC
T ss_pred CCCCCEEEecCceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEE
Confidence 334567999999999998 788898877 999999888 789999999999988
Q ss_pred --------------eee--eeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccC
Q psy3968 966 --------------DAS--MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLN 1009 (1080)
Q Consensus 966 --------------~~~--~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln 1009 (1080)
+|+ |.|+.||+|+.+. ++..++.|.|.....=..|
T Consensus 85 GidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d---------~~~i~~~g~~~~t~vvvtn 135 (162)
T 1ax3_A 85 GIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD---------LDAVKPNVPSLMTPIVFTN 135 (162)
T ss_dssp SSSTTTTTTTTEEESCCCCSEECSEEEEEEEC---------HHHHGGGSSCCCEEEEESS
T ss_pred CccchhcCCCccEEEEeCCCEEcCCCEEEEEC---------HHHHHhcCCCCEEEEEEEC
Confidence 666 8999999999873 2244566777665554444
No 147
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.69 E-value=0.00021 Score=81.76 Aligned_cols=36 Identities=31% Similarity=0.532 Sum_probs=32.7
Q ss_pred CCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 913 ~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
+...|.||.+|.|.+++|++||.|++||+|+.|+.-
T Consensus 31 ~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 31 NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 445789999999999999999999999999999864
No 148
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=96.50 E-value=0.0016 Score=64.70 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=65.7
Q ss_pred CcccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEe-------------------------
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSI------------------------- 965 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~------------------------- 965 (1080)
..|.||+.|+|+.+. +..|.|-. |+.+++..+ ++.++||++|+|+.+
T Consensus 8 ~~i~aP~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidT 83 (154)
T 2gpr_A 8 LKVLAPCDGTIITLD-EVEDEVFKERMLGDGFAINPK---SNDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDT 83 (154)
T ss_dssp EEEECSSSEEEECGG-GSSCHHHHTTSSCEEEEEEES---SSEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSG
T ss_pred CEEEecCCeEEEEee-ECCCccccccceeCeEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcch
Confidence 569999999999985 88898877 999999988 479999999999984
Q ss_pred ----------eee--eeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccC
Q psy3968 966 ----------DAS--MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLN 1009 (1080)
Q Consensus 966 ----------~~~--~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln 1009 (1080)
+|+ |.|+.||+|+++. ++..++.|.|.....=..|
T Consensus 84 v~l~G~gF~~~V~~Gd~V~~G~~L~~~d---------~~~i~~~g~~~~t~vvvtn 130 (154)
T 2gpr_A 84 VSLDGNGFESFVTQDQEVNAGDKLVTVD---------LKSVAKKVPSIKSPIIFTN 130 (154)
T ss_dssp GGGTTCSEEECCCTTCEECTTCEEEEEC---------HHHHHHHSSCCCEEEEEEE
T ss_pred hhcCCCceEEEEcCCCEEcCCCEEEEEC---------HHHHHhcCCCCeEEEEEEC
Confidence 666 9999999999873 1245556777665555445
No 149
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=96.39 E-value=0.0031 Score=73.04 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=77.2
Q ss_pred HHHHHHHHHHCCC---C-CCCCCCCC---CCCHHHHHHHHHHhC-CcEEEEeCCCCCC----cCeEEECCHhHHHHHHHH
Q psy3968 80 KVAARQAAIDSGV---P-IVPGTPGP---ITTTEEAMEFCLKYG-LPVIFKAAYGGGG----RGMRVVRKMEDVEENFQR 147 (1080)
Q Consensus 80 K~~~r~~l~~~GI---p-vp~~~~~~---v~s~ee~~~~~~~ig-fPvVVKP~~g~Gg----~GV~iv~s~eeL~~a~~~ 147 (1080)
-+..|++|.++++ | +.+..+.. .++.+++.+.++.+| ||+|+|+..-.|+ -||++..|++|+.+++.+
T Consensus 8 Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ 87 (425)
T 3mwd_A 8 EQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (425)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHH
Confidence 3577899999999 4 22211122 346689999999998 9999999774333 379999999999998877
Q ss_pred HHHHHHHhcC----CCcEEEeeccCC--CcEEEEEEEEecCCcEEEE
Q psy3968 148 ASSEAKAAFG----NGAMFIEKFIER--PRHIEVQLLGDKAGNVVHL 188 (1080)
Q Consensus 148 ~~~~a~~~~g----~~~vlVEeyI~G--~~ei~v~vl~d~~G~vv~l 188 (1080)
.......... -..++||++++. .+|+.+.+..|..|.++.+
T Consensus 88 ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~ 134 (425)
T 3mwd_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (425)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred HHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEE
Confidence 6532110000 135999999975 3899999999988666554
No 150
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=96.36 E-value=0.0026 Score=63.52 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=65.6
Q ss_pred CcccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEe-------------------------
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSI------------------------- 965 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~------------------------- 965 (1080)
..|.||+.|+|+.+. +..|.|-. |+.+++..+. ..++||++|+|+.+
T Consensus 13 ~~i~aP~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidT 88 (161)
T 1f3z_A 13 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDT 88 (161)
T ss_dssp EEEECSSCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSG
T ss_pred cEEEecCCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccc
Confidence 459999999999986 88888877 9999988884 79999999999998
Q ss_pred ----------eee--eeeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccC
Q psy3968 966 ----------DAS--MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLN 1009 (1080)
Q Consensus 966 ----------~~~--~~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln 1009 (1080)
+|+ |.|+.||+|+++. ++..++.|.|.....=..|
T Consensus 89 V~l~G~gF~~~V~~Gd~V~~G~~L~~~d---------~~~i~~~g~~~~t~vvvtn 135 (161)
T 1f3z_A 89 VELKGEGFKRIAEEGQRVKVGDTVIEFD---------LPLLEEKAKSTLTPVVISN 135 (161)
T ss_dssp GGGTTTTEEECSCTTCEECTTCEEEEEC---------HHHHHHHCSBCCEEEEESC
T ss_pred hhcCCCccEEEEeCcCEECCCCEEEEEC---------HHHHHhcCCCCeEEEEEEC
Confidence 677 9999999999873 1245556777665544444
No 151
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.04 E-value=0.0086 Score=68.30 Aligned_cols=67 Identities=24% Similarity=0.113 Sum_probs=58.6
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc------cCCceeEecCCCeEEeEeeeeeeeecCceeEEec
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA------MKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTN 981 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea------mKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~ 981 (1080)
..-|+||..|.+. .+|+.||.|++||+|+.|.. =.-..+|+||.+|+|-.....-.|..|+.|+.|.
T Consensus 290 ~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~V~~G~~l~~i~ 362 (368)
T 3fmc_A 290 YRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASASVHQGTELYKVM 362 (368)
T ss_dssp EEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSEECTTCEEEEEE
T ss_pred cEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCccCCCCEEEEEe
Confidence 3458999999766 88999999999999999998 3466899999999998888889999999999873
No 152
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=95.56 E-value=0.009 Score=74.28 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=78.3
Q ss_pred HHHHHHHHHHCCCC------CCCCCCCCC---CCHHHHHHHHHHhC-CcEEEEeCCCCCCc----CeEEECCHhHHHHHH
Q psy3968 80 KVAARQAAIDSGVP------IVPGTPGPI---TTTEEAMEFCLKYG-LPVIFKAAYGGGGR----GMRVVRKMEDVEENF 145 (1080)
Q Consensus 80 K~~~r~~l~~~GIp------vp~~~~~~v---~s~ee~~~~~~~ig-fPvVVKP~~g~Gg~----GV~iv~s~eeL~~a~ 145 (1080)
-+..|++|+++++| .+++ ..+ ++.+++.+.++.++ +|+|+|+..-.||| ||++..|.+|+.+++
T Consensus 8 Ey~aK~ll~~~~~~~~~~~~~~~~--~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa 85 (829)
T 3pff_A 8 EQTGKELLYKFICTTSAIQNRFKY--ARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWL 85 (829)
T ss_dssp HHHHHHHHHHHCCCSSCBCSTTCC--EEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhCccccccccCCce--EEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHH
Confidence 36788999999998 3343 223 45688888888887 99999998766655 689999999999988
Q ss_pred HHHHHHHHHhcC----CCcEEEeeccCC--CcEEEEEEEEecCCcEEEE
Q psy3968 146 QRASSEAKAAFG----NGAMFIEKFIER--PRHIEVQLLGDKAGNVVHL 188 (1080)
Q Consensus 146 ~~~~~~a~~~~g----~~~vlVEeyI~G--~~ei~v~vl~d~~G~vv~l 188 (1080)
.++......... -..++||++++. .+|+.+.+..|..|.++.+
T Consensus 86 ~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~ 134 (829)
T 3pff_A 86 KPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLF 134 (829)
T ss_dssp TTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEE
Confidence 776532111000 135899999974 3899999999988766554
No 153
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Probab=95.03 E-value=0.0058 Score=73.62 Aligned_cols=32 Identities=13% Similarity=0.307 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHc---CCc---EEEEec-CCccCCC
Q psy3968 1046 YDLKYYQNLADELVKA---GTH---VLCIKV-RILLSPV 1077 (1080)
Q Consensus 1046 ~~~~~~~~~~~~~~~~---g~~---~~~~kd-~~~~~p~ 1077 (1080)
.+++|.+++++.+.++ ||| .|+|+| .|+++|.
T Consensus 223 td~dfl~ev~~aa~eaG~~Gad~~~~I~LpDTvG~~tP~ 261 (644)
T 3hq1_A 223 TELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPN 261 (644)
T ss_dssp SCHHHHHHHHHHHHHHHCCCSSSCEEEEEEESSCCSCHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCceeEEEecCCCcccCHH
Confidence 6899999999999997 577 899999 9999985
No 154
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=94.96 E-value=0.019 Score=49.89 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=30.7
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
..|+||..|+|.++++++||.|..|++|+.|+.
T Consensus 45 ~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 45 VKIPSPVRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EECCCCCCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred EEEECCCCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 468999999999999999999999999999873
No 155
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=94.90 E-value=0.05 Score=61.11 Aligned_cols=64 Identities=27% Similarity=0.397 Sum_probs=55.7
Q ss_pred ccCCCCeEEEEEEecCCCeeecCCEEEEEEc----cCCceeEecCCCeEEeEeeeeeeeecCceeEEec
Q psy3968 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSA----MKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTN 981 (1080)
Q Consensus 917 v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea----mKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~~ 981 (1080)
+.||..|.+. ..++.|+.|++||+|+.+-. .+...+|+||.+|+|........|..|+.|+.|.
T Consensus 260 ~~a~~~G~~~-~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~~p~V~~Gd~l~~ia 327 (332)
T 2qj8_A 260 LKSPSPGIFE-PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRSAMYVQGNEEVAILA 327 (332)
T ss_dssp EECSSSEEEE-ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEECSEEECTTCEEEEEE
T ss_pred EeCCCCeEEE-EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeCCCeeCCCCEEEEEe
Confidence 5788888665 77999999999999999965 5788999999999998877668999999999874
No 156
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=94.79 E-value=0.018 Score=50.44 Aligned_cols=32 Identities=38% Similarity=0.484 Sum_probs=29.9
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
..|+||..|+|.++++++||.|+.|++|+.|+
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 46899999999999999999999999999885
No 157
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=94.35 E-value=0.018 Score=50.39 Aligned_cols=34 Identities=38% Similarity=0.707 Sum_probs=31.6
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|+||..|+|.+++|++||.|..|++|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 4579999999999999999999999999999975
No 158
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=94.30 E-value=0.029 Score=48.96 Aligned_cols=33 Identities=36% Similarity=0.633 Sum_probs=30.9
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
..|.||..|+|.+++|++|+.|..|++|+.|+.
T Consensus 42 ~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 42 MEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 468999999999999999999999999999875
No 159
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=94.25 E-value=0.027 Score=48.02 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=30.5
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
..|+||+.|+|.++++++|+.|++|++|+.|..
T Consensus 37 ~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 37 IPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred EEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 468999999999999999999999999998864
No 160
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=93.97 E-value=0.032 Score=48.69 Aligned_cols=33 Identities=33% Similarity=0.310 Sum_probs=30.7
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
..|.||..|+|.+++|++||.|..|++|+.|+.
T Consensus 45 ~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 45 MEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred EEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 568999999999999999999999999999864
No 161
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.88 E-value=0.026 Score=51.83 Aligned_cols=43 Identities=9% Similarity=0.143 Sum_probs=40.2
Q ss_pred CCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 939 GAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 939 g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
|..++.+|+|+....|.||.+|+|.+++++ +.|+.||+|+.++
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 456688999999999999999999999999 9999999999997
No 162
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=93.56 E-value=0.041 Score=47.55 Aligned_cols=32 Identities=31% Similarity=0.527 Sum_probs=29.9
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
..|+||..|+|.++++++|+.|..|++|+.||
T Consensus 46 ~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 46 TEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp EEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred EEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 46899999999999999999999999999885
No 163
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=93.50 E-value=0.028 Score=49.88 Aligned_cols=35 Identities=37% Similarity=0.668 Sum_probs=32.5
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEcc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieam 948 (1080)
...|.||+.|+|.++++++||.|..|++|+.|+..
T Consensus 39 ~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 39 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred EEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 45799999999999999999999999999999875
No 164
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=93.50 E-value=0.056 Score=48.91 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=31.0
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
..|.||..|+|.+++|++||.|..|++|+.|+.
T Consensus 48 ~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 48 VTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred EEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 568999999999999999999999999999975
No 165
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=93.30 E-value=0.056 Score=46.19 Aligned_cols=32 Identities=34% Similarity=0.582 Sum_probs=29.7
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
..|.||..|+|.++++++|+.|..|++|+.||
T Consensus 43 ~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 43 NEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp EEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred EEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 46899999999999999999999999999875
No 166
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=92.73 E-value=0.07 Score=47.52 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.9
Q ss_pred CcccCCCCeEEEEEEecCCC-eeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGD-KVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~-~V~~g~~~~~iea 947 (1080)
..|.||..|+|.+++|++|+ .|..|++|+.|+.
T Consensus 49 ~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 49 IGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEECCSCEEEEEESSCTTCCCEETTCEEEEEES
T ss_pred ceeecCcCcEEEEEEECCCCeEECCCCEEEEEEc
Confidence 56899999999999999999 8999999999985
No 167
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=91.12 E-value=0.04 Score=49.97 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=0.0
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEE
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie 946 (1080)
...|+||..|+|.++.+++|+.|..|++|+.||
T Consensus 62 ~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 62 QNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------------------------------
T ss_pred cEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 356999999999999999999999999999876
No 168
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.09 E-value=0.1 Score=47.61 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=32.1
Q ss_pred CcccCCCCeEEEEEEecCCCee-ecCCEEEEEEccC
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKV-EKGAALVVLSAMK 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V-~~g~~~~~ieamK 949 (1080)
..|.||..|+|.+++|++||.| ..|++|+.|+...
T Consensus 51 ~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 51 VTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp EEEECSSCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred eEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 5689999999999999999999 9999999998753
No 169
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=90.70 E-value=0.038 Score=48.38 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|.||..|+|.++++++||.|..|++|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 4679999999999999999999999999998763
No 170
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=90.61 E-value=0.11 Score=46.01 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=33.8
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCce
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEM 952 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~ 952 (1080)
..|.||..|+|.+++ ++|+.|..|++|+.|+...-|+
T Consensus 43 ~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~~~~ 79 (84)
T 2kcc_A 43 MTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDDLEH 79 (84)
T ss_dssp EEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSCSCC
T ss_pred EEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCChhh
Confidence 568999999999999 9999999999999999877665
No 171
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=90.50 E-value=0.18 Score=50.01 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=31.9
Q ss_pred EEecCCCeeecCCEEEEEEccCCc-------eeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 928 IRVKVGDKVEKGAALVVLSAMKME-------MVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 928 ~~v~~G~~V~~g~~~~~ieamKm~-------~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
++|++||+|++||+|+.+.-.+.. +.+--.- .....+... ..|..|+.++.+
T Consensus 93 ~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 93 SFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NGGKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp ECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CSSCCCSCBCCEEECTTCEEEEE
T ss_pred EEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CCcceEEEccCceEcCCCEEEEe
Confidence 589999999999999988743322 2222111 112223222 667888887765
No 172
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=90.39 E-value=0.16 Score=48.78 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCcccCCCCeEEEEEEecCCC-eeecCCEEEEEEccC
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGD-KVEKGAALVVLSAMK 949 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~-~V~~g~~~~~ieamK 949 (1080)
...|.||..|+|.+++|++|| .|+.||+|++|+.-.
T Consensus 70 ~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 70 TIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp EEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred eeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 356899999999999999998 899999999998643
No 173
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=90.31 E-value=0.14 Score=47.69 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=31.4
Q ss_pred CcccCCCCeEEEEEEecCCC-eeecCCEEEEEEcc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGD-KVEKGAALVVLSAM 948 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~-~V~~g~~~~~ieam 948 (1080)
..|.||..|+|.+++|++|| .|..|++|++|+.-
T Consensus 51 ~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 51 VGFESLEECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp EEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred eEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 56899999999999999999 89999999999864
No 174
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=89.84 E-value=0.05 Score=47.62 Aligned_cols=34 Identities=44% Similarity=0.677 Sum_probs=31.1
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|.||..|+|.++++++||.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp EEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred EEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 3568999999999999999999999999998874
No 175
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=89.76 E-value=0.22 Score=49.69 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=29.7
Q ss_pred CcccCCCCeEEEEE-----------------------------------EecCCCeeecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEI-----------------------------------RVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~-----------------------------------~v~~G~~V~~g~~~~~iea 947 (1080)
+.++||..|+|..+ +|++||+|++||+|+.+.-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 67899999999888 8999999999999998863
No 176
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=88.25 E-value=0.21 Score=45.61 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=31.7
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK 949 (1080)
..|+||+.|+|.++++++|+.|..|++|+.|....
T Consensus 52 ~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 52 HTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEE 86 (99)
T ss_dssp EEEECSSCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred EEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence 46899999999999999999999999999987644
No 177
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=88.02 E-value=0.78 Score=46.33 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=31.4
Q ss_pred EEEEecCCCeeecCCEEEEEEccCC-------ceeEecCCCeEEeEeeee-eeeecCceeE
Q psy3968 926 MEIRVKVGDKVEKGAALVVLSAMKM-------EMVVQAPVQGVVKSIDAS-MLLRGANAVG 978 (1080)
Q Consensus 926 ~~~~v~~G~~V~~g~~~~~ieamKm-------~~~i~a~~~G~v~~~~~~-~~v~~g~~l~ 978 (1080)
.+++|++||+|++||+|+.+.-.+. .+.|--.-......+... ..|..|+.++
T Consensus 118 F~~~V~~Gd~Vk~Gd~L~~fD~~~Ik~~g~~~~tpvvvtN~~~~~~~~~~~g~V~~g~~~~ 178 (183)
T 3our_B 118 FTRIAEEGQTVKAGDTVIEFDLALLEEKAKSTLTPVVISNMDEIKELNKLSGSVVVGETPV 178 (183)
T ss_dssp EEECSCTTCEECTTCEEEEECHHHHHHHSSBCCEEEEESCGGGCSEEEECCSEECTTTSEE
T ss_pred ceEEEeCcCEEcCCCEEEEECHHHHHHcCCCCeEEEEEEcchhcceEeeccCcEeCCCEEE
Confidence 3458999999999999998864332 223322222222333333 5677777443
No 178
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=87.35 E-value=0.22 Score=49.69 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.7
Q ss_pred EecCCCeeecCCEEEEEEcc
Q psy3968 929 RVKVGDKVEKGAALVVLSAM 948 (1080)
Q Consensus 929 ~v~~G~~V~~g~~~~~ieam 948 (1080)
+|++||+|++||+|+.+.-.
T Consensus 99 ~V~~Gd~V~~G~~L~~~d~~ 118 (162)
T 1ax3_A 99 FVSEGDRVEPGQKLLEVDLD 118 (162)
T ss_dssp SCCCCSEECSEEEEEEECHH
T ss_pred EEeCCCEEcCCCEEEEECHH
Confidence 89999999999999988633
No 179
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=85.50 E-value=0.25 Score=46.21 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=31.6
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecC-CEEEEEEcc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKG-AALVVLSAM 948 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g-~~~~~ieam 948 (1080)
...|+||+.|+|.++.+++|+.|..| ++|+.|..+
T Consensus 67 ~~~i~AP~~G~V~~~~~~~G~~v~~g~~~l~~i~~~ 102 (116)
T 2k32_A 67 HTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNL 102 (116)
T ss_dssp EEEEECSSSEEECCCSCCTTCEECTTTSCCEEEECS
T ss_pred CCEEEcCCCEEEEEEECCCCCEEcCCCcEEEEEECC
Confidence 45799999999999999999999999 999988764
No 180
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=81.74 E-value=15 Score=39.88 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh
Q psy3968 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ 546 (1080)
Q Consensus 477 P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~ 546 (1080)
..++..+++.+++.+ ++||++++.+ ...+.+|+++|+++|+-..++ .-|.+-.+++...
T Consensus 75 ~~rv~pvi~~l~~~~-~~piSIDT~~-----~~va~aAl~aGa~iINdvsg~-----~d~~~~~~~a~~~ 133 (282)
T 1aj0_A 75 LQRVIPVVEAIAQRF-EVWISVDTSK-----PEVIRESAKVGAHIINDIRSL-----SEPGALEAAAETG 133 (282)
T ss_dssp HHHHHHHHHHHHHHC-CCEEEEECCC-----HHHHHHHHHTTCCEEEETTTT-----CSTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhc-CCeEEEeCCC-----HHHHHHHHHcCCCEEEECCCC-----CCHHHHHHHHHhC
Confidence 455677788888887 8999999877 556778999999999765543 3456656655443
No 181
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=81.68 E-value=11 Score=43.34 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=65.3
Q ss_pred CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC---EEeeccCCCCCCCCCCcHHH
Q psy3968 464 KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD---VVDVAVDSMSGMTSQPSMGA 540 (1080)
Q Consensus 464 ~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~---~vd~s~~glg~~~g~~~~e~ 540 (1080)
+.|+|..+.+ .|+++..+|+.+++.+ ++||.+-+ .-....-+|+++|++ .|.++- .-+.+.
T Consensus 129 D~ial~~~s~--dpe~~~~vVk~V~e~~-dvPL~IDS-----~dpevleaALea~a~~~plI~sat--------~dn~e~ 192 (446)
T 4djd_C 129 QAIAIRHDAD--DPAAFKAAVASVAAAT-QLNLVLMA-----DDPDVLKEALAGVADRKPLLYAAT--------GANYEA 192 (446)
T ss_dssp CEEEEECCSS--STHHHHHHHHHHHTTC-CSEEEEEC-----SCHHHHHHHHGGGGGGCCEEEEEC--------TTTHHH
T ss_pred cEEEEEeCCC--CHHHHHHHHHHHHHhC-CCCEEEec-----CCHHHHHHHHHhhcCcCCeeEecc--------hhhHHH
Confidence 6888888854 7999999999999987 99999986 446777888888876 344432 347778
Q ss_pred HHHHHhcCCCCCCC---CHHHHHHHHHHHHH
Q psy3968 541 VVASLQGSDIDTGL---DLKDISAYSAYWEQ 568 (1080)
Q Consensus 541 ~v~~l~~~g~~~~~---d~~~l~~~~~~~~~ 568 (1080)
+.....+++...-+ |++.+.++.+.+.+
T Consensus 193 m~~lAa~y~~pVi~~~~dl~~lkelv~~a~~ 223 (446)
T 4djd_C 193 MTALAKENNCPLAVYGNGLEELAELVDKIVA 223 (446)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeccHHHHHHHHHHHHH
Confidence 88777776654322 67777766666655
No 182
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=81.63 E-value=1.5 Score=43.22 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=41.5
Q ss_pred CCCCeEEEEEEecCCCeeecCCEEEEEEccCCce-eEecCCCeEEeEee
Q psy3968 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEM-VVQAPVQGVVKSID 966 (1080)
Q Consensus 919 aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~-~i~a~~~G~v~~~~ 966 (1080)
=|..|..+-+.+.+|++|.+|+.++-|.+=|=|. -++||++|+|.-+.
T Consensus 105 vpaeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 105 VPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp EEECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred EEeCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 3556788888999999999999999999999875 59999999986553
No 183
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=79.43 E-value=0.97 Score=55.64 Aligned_cols=67 Identities=28% Similarity=0.440 Sum_probs=62.0
Q ss_pred cCCCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEE------ccCCceeEecCCCeEEeEeeee--eeeecCceeEEe
Q psy3968 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS------AMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYT 980 (1080)
Q Consensus 909 ~~~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ie------amKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~ 980 (1080)
+...+++.|+|||||+|++|+|++||+|++||+|++|| . |+||.+|+|+++.++ +.|..|++|++|
T Consensus 607 ~~~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~------i~ap~~G~v~~i~~~~G~~v~~g~~l~~i 680 (681)
T 3n6r_A 607 LPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENI------LRAEKKGVVAKINASAGNSLAVDDVIMEF 680 (681)
T ss_dssp CCCCCCSEEECCSCEEEEEECCCTTCEECTTCEEEEEECSSCEEE------EECSSSEEEEEECCCTTCEECTTCEEEEE
T ss_pred cCCCCCCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEecCceeE------EECCCCeEEEEEEeCCcCEeCCCCEEEEE
Confidence 33556789999999999999999999999999999988 8 899999999999999 999999999987
Q ss_pred c
Q psy3968 981 N 981 (1080)
Q Consensus 981 ~ 981 (1080)
+
T Consensus 681 ~ 681 (681)
T 3n6r_A 681 E 681 (681)
T ss_dssp C
T ss_pred C
Confidence 4
No 184
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=79.25 E-value=1.2 Score=50.37 Aligned_cols=55 Identities=7% Similarity=-0.048 Sum_probs=38.7
Q ss_pred EecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 929 RVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 929 ~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
.|+.|+-...=.....+++. -+..|.++.+|+|.+++++ +.|+.|++|+.|...+
T Consensus 22 ~v~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 22 TLEAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp -------CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCHH
T ss_pred EEEeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcHH
Confidence 45555544444455677774 4678999999999999999 9999999999997543
No 185
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=77.53 E-value=5 Score=46.78 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCcEeCCcHHHHHHhcCHHHH-------HHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeC
Q psy3968 53 SDFAQAVLDAGIRFIGPSPYVVQQMGDKVAA-------RQAAI-DSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAA 124 (1080)
Q Consensus 53 ~~~a~~l~~~gi~~iGps~eai~~~~DK~~~-------r~~l~-~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~ 124 (1080)
+.+.++..+-++.++ |++.+ ..+.||..+ +.++. +.=++..|++ .+.+.++...+.+... -+|+||+
T Consensus 296 ~gLl~A~r~G~V~i~-Na~gs-gv~~dKal~a~Lp~l~~~~lgEe~il~~VpT~--~c~~~~~~~~vl~~l~-~lViKp~ 370 (474)
T 3n6x_A 296 PGLLSVYRNGGVTLA-NAVGT-GVADDKDTYIYVPEMIRFYLGEEPILSNVPTY--QLSKADDLKYVLDNLA-ELVVKEV 370 (474)
T ss_dssp TTHHHHHHTTSCEEE-SCTTT-HHHHSTTTGGGHHHHHHHHHCSCCSSEECCCE--ETTSHHHHHHHHHSGG-GEEEEEC
T ss_pred HHHHHHHHcCCEEEe-CCCch-hhhcCcHHHHHhHHHHHHhCCHhhhccCCCce--ecCCHHHHHHHHhchh-heEEEec
Confidence 456666666566665 44433 256666422 22221 2234445553 4677777777766655 7999999
Q ss_pred CCCCCcCeEE--ECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC
Q psy3968 125 YGGGGRGMRV--VRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERP 170 (1080)
Q Consensus 125 ~g~Gg~GV~i--v~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~ 170 (1080)
+|.||.|+.+ --+.++.++..+++... ...+++|++++-.
T Consensus 371 ~g~gg~gv~iG~~~s~~e~~~~~~~i~~~------p~~yIaQe~v~ls 412 (474)
T 3n6x_A 371 QGSGGYGMLVGPAASKQELEDFRQRILAN------PANYIAQPTLALS 412 (474)
T ss_dssp CCE-----EEGGGCCHHHHHHHHHHHHHS------GGGEEEEECCCCC
T ss_pred CCCCCCceEECCcCCHHHHHHHHHHHHhC------CCCEEEeeccCCc
Confidence 9999999987 35677888877776541 2469999999864
No 186
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=76.96 E-value=14 Score=40.60 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccCCC
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVDSM 529 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~gl 529 (1080)
.-+..+++++.+.+.++|+.+|. |.|........|+++|.+ +||+|..++
T Consensus 59 ~~~~~~v~~aa~~~~~VPValHL--DHg~~~e~~~~ai~~GFtSVMiDgS~~p~ 110 (307)
T 3n9r_A 59 DMAVGMVKIMCERYPHIPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAF 110 (307)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEE--EEECSHHHHHHHHHHTCSEEEECCTTSCH
T ss_pred HHHHHHHHHHHHhcCCCcEEEEC--CCCCCHHHHHHHHHhCCCcEEEECCCCCH
Confidence 44667787777774589998876 335568899999999998 578777644
No 187
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=74.21 E-value=12 Score=40.91 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHH
Q psy3968 480 AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASL 545 (1080)
Q Consensus 480 ~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l 545 (1080)
+..+|+++++.+ ++||.+++.+ .....+|+++|+++|+... |. ..-+.+-.+++..
T Consensus 103 vvpvI~~l~~~~-~vpiSIDT~~-----~~V~~aAl~aGa~iINdvs-g~---~~d~~m~~~aa~~ 158 (297)
T 1tx2_A 103 VVPMIQAVSKEV-KLPISIDTYK-----AEVAKQAIEAGAHIINDIW-GA---KAEPKIAEVAAHY 158 (297)
T ss_dssp HHHHHHHHHHHS-CSCEEEECSC-----HHHHHHHHHHTCCEEEETT-TT---SSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CceEEEeCCC-----HHHHHHHHHcCCCEEEECC-CC---CCCHHHHHHHHHh
Confidence 334447888877 8999999874 5667788999999995443 32 1245554454443
No 188
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=72.33 E-value=22 Score=38.15 Aligned_cols=127 Identities=15% Similarity=0.082 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh------cCCCCCC
Q psy3968 480 AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ------GSDIDTG 553 (1080)
Q Consensus 480 ~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~------~~g~~~~ 553 (1080)
+..++++|++ ++++|++-+ +=- ..+-+|+++||++|+=-.+ +...|.+-.+++... .+.-.+
T Consensus 70 v~pvi~~l~~--~~v~iSIDT---~~~--~Va~~al~aGa~iINDVs~----g~~d~~m~~~va~~~~~~vlMH~~~~p- 137 (270)
T 4hb7_A 70 VLPVVEAIVG--FDVKISVDT---FRS--EVAEACLKLGVDMINDQWA----GLYDHRMFQIVAKYDAEIILMHNGNGN- 137 (270)
T ss_dssp HHHHHHHHTT--SSSEEEEEC---SCH--HHHHHHHHHTCCEEEETTT----TSSCTHHHHHHHHTTCEEEEECCCSSC-
T ss_pred HHHHHHHhhc--CCCeEEEEC---CCH--HHHHHHHHhccceeccccc----cccchhHHHHHHHcCCCeEEeccccCC-
Confidence 4444555543 488998864 433 4457899999999975433 344577777777654 121112
Q ss_pred CCHHHHHHHHHHHHHHHhccCCCCccCCCCcC--CcceeccCCCCchhhcHHHHHHHCCCCccHHHHHHHHHHHHH--hC
Q psy3968 554 LDLKDISAYSAYWEQTRQLYAPFECTTTMKSG--NADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANL--LL 629 (1080)
Q Consensus 554 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~ev~~~~~~vr~--~l 629 (1080)
-+-+-+.++..|+.+-...-.. .|+ +.-++. || .|.....++-++.+.++.+ .|
T Consensus 138 ~~~~vv~ev~~~l~~~i~~a~~-------aGI~~~~IilD---PG------------iGFgKt~~~N~~ll~~l~~~~~l 195 (270)
T 4hb7_A 138 RDEPVVEEMLTSLLAQAHQAKI-------AGIPSNKIWLD---PG------------IGFAKTRNEEAEVMARLDELVAT 195 (270)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHH-------TTCCGGGEEEE---CC------------TTSSCCHHHHHHHHTCHHHHHTT
T ss_pred ccccchhHHHHHHHHHHHHHHH-------cCCCCceEEEe---CC------------CCcccccccHHHHHhhHHHHhcC
Confidence 2233456666666543211110 011 111111 44 4555555655555555554 48
Q ss_pred CCccccCCCch
Q psy3968 630 GDIIKVTPSSK 640 (1080)
Q Consensus 630 G~~~~VTP~Sq 640 (1080)
|||+||-+|-|
T Consensus 196 g~PvLvG~SRK 206 (270)
T 4hb7_A 196 EYPVLLATSRK 206 (270)
T ss_dssp CSCBEECCTTS
T ss_pred CCCEEEEecHH
Confidence 99999977653
No 189
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=72.18 E-value=2.6 Score=46.88 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=40.4
Q ss_pred EecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 929 RVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 929 ~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
.|+.|+--..=..-..+++. -+..|.++.+|+|.+++++ +.|+.||+|+.|..++
T Consensus 10 ~v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~~ 66 (341)
T 3fpp_A 10 IVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQ 66 (341)
T ss_dssp ---CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCHH
T ss_pred EEEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChHH
Confidence 34444433333445566766 5779999999999999999 9999999999997543
No 190
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=71.67 E-value=4.4 Score=43.56 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=35.8
Q ss_pred EEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 941 ALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 941 ~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
.-..+++- -...|.|+.+|+|.+++|+ +.|+.||+|+.|..++
T Consensus 13 ~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 13 LPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp EEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCHH
T ss_pred EEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcHH
Confidence 34566664 3568999999999999999 9999999999997654
No 191
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=71.16 E-value=0.84 Score=52.88 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=0.0
Q ss_pred CcccCCCCeEEEEEEecCCCeeecCCEEEEEEccC
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMK 949 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamK 949 (1080)
..|.||..|+|.+++|++||.|..||+|++|+...
T Consensus 46 ~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 46 VEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp -----------------------------------
T ss_pred EEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 46899999999999999999999999999998654
No 192
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=70.84 E-value=3.9 Score=49.48 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCC-CC-CCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcC
Q psy3968 54 DFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSG-VP-IVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRG 131 (1080)
Q Consensus 54 ~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~G-Ip-vp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~G 131 (1080)
.+.+.+++.++.++.|....+ +.||..+.-+.+.+- -| .++++. ..+. ++ ..- ..|+||..|..|.|
T Consensus 474 ~ll~~l~~~~v~iieP~~~~l--lsNKailalLw~l~p~hp~LLpT~f--~~~~-~l----~~~--~yV~KPi~gReG~n 542 (619)
T 2io8_A 474 RLIDVLLRPEVLVFEPLWTVI--PGNKAILPILWSLFPHHRYLLDTDF--TVND-EL----VKT--GYAVKPIAGRCGSN 542 (619)
T ss_dssp CHHHHHTCTTCEEESCGGGGT--TTSTTHHHHHHHHSTTCTTCCCEES--SCCH-HH----HHH--CEEEEETTCCTTTT
T ss_pred HHHHHHHhCCCEEECHHHHHH--hhhHHHHHHHHHhCCCCCCCCCeee--cCCc-cc----ccC--CEEEccCCCCCCCC
Confidence 355666677899997766655 999999998888652 22 124421 1222 22 122 59999999999999
Q ss_pred eEEECCHhH-HHHHHHHHHHHHHHhcCCCcEEEeeccCCC----cEEEEEEEEecCCcEEEEEeee
Q psy3968 132 MRVVRKMED-VEENFQRASSEAKAAFGNGAMFIEKFIERP----RHIEVQLLGDKAGNVVHLYERD 192 (1080)
Q Consensus 132 V~iv~s~ee-L~~a~~~~~~~a~~~~g~~~vlVEeyI~G~----~ei~v~vl~d~~G~vv~l~~r~ 192 (1080)
|.+++..++ +.+ ....+++..++.|+|++=+ .+..+.++.- +|+...++-|.
T Consensus 543 V~i~~~~~~~~~~--------~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~v-gg~~aG~~~R~ 599 (619)
T 2io8_A 543 IDLVSHHEEVLDK--------TSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTV-GGNYGGTCLRG 599 (619)
T ss_dssp CEEECTTSCEEEE--------CCCTTTTSCEEEEECCCCCEETTEEEEEEEEEE-TTEEEEEEEEE
T ss_pred EEEEeCCChhHhh--------ccccccCCCeEEEEecCCCCcCCcceEEEEEEE-CCEEEEEEEec
Confidence 999976222 110 1123556789999999864 2222444433 34555555443
No 193
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=70.80 E-value=2.2 Score=48.05 Aligned_cols=60 Identities=5% Similarity=-0.166 Sum_probs=48.2
Q ss_pred cccCCCCeEEEE--EEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeeeeeeecCceeEEe
Q psy3968 916 QVGAPMPGSVME--IRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYT 980 (1080)
Q Consensus 916 ~v~aPm~G~v~~--~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~ 980 (1080)
.|.+|-.|.+.. -.++.|+.|++||+|+.+-. .+|.||.+|++.-.. .-.|..|+.++.+
T Consensus 265 ~v~a~~~g~~~~~~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~p-~p~V~~G~~~~~i 326 (350)
T 2bco_A 265 TIVRLHDDFDFMFDDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVFP-NRHVAIGQRAALM 326 (350)
T ss_dssp EEECCSSSEEESSCTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEESC-CTTCCTTSEEEEE
T ss_pred EEEcCCCCeEEeccccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEec-CCCCCCCcEEEEE
Confidence 477887775542 34799999999999999855 889999999876655 6889999987776
No 194
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=70.56 E-value=34 Score=37.74 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC---EEee
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD---VVDV 524 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~---~vd~ 524 (1080)
++++..++|+.+++.+ ++||.+-.-.+.-.-....-+|+++|++ .|..
T Consensus 113 s~ee~~~~V~~v~~~~-~vPlsIDg~~~~T~~~eV~eaAleagag~~~lINs 163 (323)
T 4djd_D 113 SVDQCVATVKEVLQAV-GVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGN 163 (323)
T ss_dssp CHHHHHHHHHHHHHHC-CSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEE
T ss_pred CHHHHHHHHHHHHhhC-CceEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEE
Confidence 5667888899999887 8999998444444456677889999976 6664
No 195
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=70.37 E-value=5.6 Score=40.12 Aligned_cols=48 Identities=27% Similarity=0.415 Sum_probs=30.8
Q ss_pred CcccCCCCeEEEEEEecCCCeeec----CCEEEEEEccCCceeEecCCCeEEeEee
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDKVEK----GAALVVLSAMKMEMVVQAPVQGVVKSID 966 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~V~~----g~~~~~ieamKm~~~i~a~~~G~v~~~~ 966 (1080)
..|.||+.|+++.+. +.-|.|=. |+-+++.=+ +..|.||++|+|..+.
T Consensus 35 ~~i~aPv~G~vi~L~-eV~D~vFs~~~mGdG~AI~P~---~g~v~AP~dG~V~~vf 86 (183)
T 3our_B 35 IEIIAPLSGEIVNIE-DVPDVVFAEKIVGDGIAIKPT---GNKMVAPVNGTIGKIF 86 (183)
T ss_dssp EEEECSSCEEEEEGG-GSSCHHHHTTSSCEEEEEEEC---SSEEECSSSEEEEEEC
T ss_pred eEEEeecceEEEEch-hCcChHhcccCccCeEEEEcC---CCEEEeCCCeEEEEEC
Confidence 357788888887552 33444421 677776553 4578888888887765
No 196
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=67.70 E-value=32 Score=37.62 Aligned_cols=47 Identities=17% Similarity=0.373 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC--EEeeccC
Q psy3968 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD--VVDVAVD 527 (1080)
Q Consensus 477 P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~--~vd~s~~ 527 (1080)
...+..+++.+.+ . ++|+.+|. |.|........|+++|.+ ++|+|-.
T Consensus 58 ~~~~~~~v~~~a~-~-~VPValHl--DHg~~~e~~~~ai~~GFtSVMiDgS~~ 106 (305)
T 1rvg_A 58 RALTLMAVELAKE-A-RVPVAVHL--DHGSSYESVLRALRAGFTSVMIDKSHE 106 (305)
T ss_dssp HHHHHHHHHHHHH-C-SSCEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTS
T ss_pred HHHHHHHHHHHHh-C-CCcEEEEC--CCCCCHHHHHHHHHcCCCeeeeCCCCC
Confidence 3456677888777 4 89999876 345568999999999998 5777743
No 197
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=67.49 E-value=1.1 Score=55.04 Aligned_cols=67 Identities=37% Similarity=0.546 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc-----cCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 911 KSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA-----MKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 911 ~~~~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea-----mKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
....+.|+|||||+|++|+|++||+|++||+|++||| - |+||.+|+|+++.++ +.|..|++|++|+.
T Consensus 599 ~~~~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~-----i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 599 HAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHS-----IRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCCCCeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEecceeEE-----EECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 4456789999999999999999999999999999985 5 689999999999999 99999999999864
No 198
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=67.40 E-value=1.1 Score=47.27 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=0.0
Q ss_pred CcccCCCCeEEEEEEecCCCe-eecCCEEEEEEc
Q psy3968 915 GQVGAPMPGSVMEIRVKVGDK-VEKGAALVVLSA 947 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~~v~~G~~-V~~g~~~~~iea 947 (1080)
..|.||..|+|.+++|++||. |..|++|++|+.
T Consensus 47 ~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp ----------------------------------
T ss_pred eEEecCCCeEEEEEEecCCCeeecCCCEEEEEec
Confidence 468899999999999999997 999999999864
No 199
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=63.23 E-value=2.7 Score=48.38 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
...|+||+.|+|.++.+++|+.|..|++|+.|-.
T Consensus 207 ~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 207 RFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp EEEEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred cEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 3479999999999999999999999999997753
No 200
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=62.09 E-value=5.7 Score=44.41 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=43.3
Q ss_pred ecCCCeeecCCEEEEEEcc-CCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 930 VKVGDKVEKGAALVVLSAM-KMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 930 v~~G~~V~~g~~~~~ieam-Km~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
|+.|+-...=..-..+++. .-+..|.|+.+|+|.+++++ +.|+.|++|+.|..++
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECSS
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChHH
Confidence 4444434444455677775 67789999999999999999 9999999999998654
No 201
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=60.04 E-value=7.3 Score=39.51 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=11.8
Q ss_pred CcccCCCCeEEEEE
Q psy3968 915 GQVGAPMPGSVMEI 928 (1080)
Q Consensus 915 ~~v~aPm~G~v~~~ 928 (1080)
..|.|+..|+|+.+
T Consensus 49 tpV~A~~~G~V~~~ 62 (182)
T 3it5_A 49 YSVVAAHAGTVRVL 62 (182)
T ss_dssp CEEECSSSEEEEEE
T ss_pred CEEEeccCEEEEEE
Confidence 57999999999875
No 202
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=59.79 E-value=1.9 Score=48.49 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=36.4
Q ss_pred CEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecCCc
Q psy3968 940 AALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNYPD 984 (1080)
Q Consensus 940 ~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~~~ 984 (1080)
..-..+++- -+..|.++.+|+|.+++++ +.|+.||+|+.|..++
T Consensus 22 ~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 22 VATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp EEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCHH
T ss_pred EEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCHH
Confidence 344566665 4568999999999999999 9999999999997654
No 203
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=59.15 E-value=5.8 Score=40.41 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=28.7
Q ss_pred EEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEe
Q psy3968 927 EIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965 (1080)
Q Consensus 927 ~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~ 965 (1080)
.++|++||.|++||.|+.-. +|-|..+|+|.+.
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~ 54 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 54 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence 46899999999999999776 9999999999543
No 204
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=58.83 E-value=1.3e+02 Score=32.29 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ 546 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~ 546 (1080)
.++..+++.+++. ++||++++.+ ...+.+|+++|+++|+-..++- .-+.+-.+++-..
T Consensus 67 ~Rv~pvi~~l~~~--~~piSIDT~~-----~~va~aAl~aGa~iINdvsg~~----~d~~m~~~~a~~~ 124 (280)
T 1eye_A 67 SRVIPVVKELAAQ--GITVSIDTMR-----ADVARAALQNGAQMVNDVSGGR----ADPAMGPLLAEAD 124 (280)
T ss_dssp HHHHHHHHHHHHT--TCCEEEECSC-----HHHHHHHHHTTCCEEEETTTTS----SCTTHHHHHHHHT
T ss_pred HHHHHHHHHhhcC--CCEEEEeCCC-----HHHHHHHHHcCCCEEEECCCCC----CCHHHHHHHHHhC
Confidence 3445555666654 7999999877 5667789999999997654332 3456666655443
No 205
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=58.65 E-value=23 Score=39.71 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=39.7
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
.|..+.+.++++++.+|++||.+.. .+....+..|+++|||.|+++..
T Consensus 144 ~~~~~~~~i~~lr~~~~~~~vi~g~----v~t~e~A~~a~~aGaD~I~v~~g 191 (351)
T 2c6q_A 144 YSEHFVEFVKDVRKRFPQHTIMAGN----VVTGEMVEELILSGADIIKVGIG 191 (351)
T ss_dssp TBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECSS
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEe----CCCHHHHHHHHHhCCCEEEECCC
Confidence 5667889999999999889988754 45677888999999999999743
No 206
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=57.42 E-value=3.9 Score=41.63 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.6
Q ss_pred ecCCCeeecCCEEEEEEccCCceeEecCCCeEEeE
Q psy3968 930 VKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKS 964 (1080)
Q Consensus 930 v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~ 964 (1080)
|++|++|++||+|+ =+..|-|..+|+|.-
T Consensus 85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~f 113 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------KNEEYICELDGKIVE 113 (193)
T ss_dssp CCTTCEECTTSBSS------TTSCSBCCSSEEEEE
T ss_pred cCCCCEEcCCCEEe------cCCeEEEccceEEEE
Confidence 78899999999998 567788999998863
No 207
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=56.61 E-value=1.4e+02 Score=34.28 Aligned_cols=137 Identities=12% Similarity=0.047 Sum_probs=86.1
Q ss_pred CeeeeccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCC---EEeeccCCCCCCCCCCcHHH
Q psy3968 464 KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD---VVDVAVDSMSGMTSQPSMGA 540 (1080)
Q Consensus 464 ~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~---~vd~s~~glg~~~g~~~~e~ 540 (1080)
+.|+|.. +-..|+++..+++.+++.. ++||.+- .-....-+|+++|++ .|...... ..+.
T Consensus 129 D~I~l~~--~~~dpe~~~~~Vk~V~e~~-dvPlsID------~dp~vleaale~~~d~~pLIns~t~e--------n~~~ 191 (445)
T 2h9a_A 129 NLVALKG--SSQDAATFAKAVATAREVT-DLPFILI------GTPEQLAAALETEGANNPLLYAATAD--------NYEQ 191 (445)
T ss_dssp CEEEEEC--TTCCHHHHHHHHHHHHHHC-CSCEEEE------SCHHHHHHHHHHHGGGCCEEEEECTT--------THHH
T ss_pred cEEEEeC--CCCCHHHHHHHHHHHHHhc-CCCEEEE------CCHHHHHHHHHhcCCCCCEEEECCHH--------HHHH
Confidence 4777776 4569999999999999998 8999887 556777889999999 88655422 4577
Q ss_pred HHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHHHCCCCccHHH
Q psy3968 541 VVASLQGSDIDT---GLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFED 617 (1080)
Q Consensus 541 ~v~~l~~~g~~~---~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~~~g~~~~~~e 617 (1080)
+......++... +-|++.+.++.+.+.+. . .. +++.- ||. .-+-+
T Consensus 192 ~~~la~~y~~~vV~~~~~l~~l~~lv~~a~~~---G-----------i~-~IiLD--P~~---------------~~~~~ 239 (445)
T 2h9a_A 192 MVELAKKYNVPLTVSAKGLDALAELVQKITAL---G-----------YK-NLILD--PQP---------------ENISE 239 (445)
T ss_dssp HHHHHHHHTCCEEEECSSHHHHHHHHHHHHHT---T-----------CC-CEEEE--CCC---------------SSHHH
T ss_pred HHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHC---C-----------CC-cEEEc--CCc---------------hhHHH
Confidence 776666444321 11555555555554442 1 11 22211 331 11333
Q ss_pred HHHHHHHHHHh--------CCCccccCCC---chhhHHhhHHH
Q psy3968 618 VKKAYREANLL--------LGDIIKVTPS---SKVVGDFAQFM 649 (1080)
Q Consensus 618 v~~~~~~vr~~--------lG~~~~VTP~---Sqivg~qA~~~ 649 (1080)
.++.+.++|+. ||||.++.++ |.+=++.|...
T Consensus 240 sl~~~~~IR~~al~~~d~~lg~P~i~~vs~~d~~~ea~lA~~~ 282 (445)
T 2h9a_A 240 GLFYQTQIRRLAIKKLFRPFGYPTIAFALDENPYQAVMEASVY 282 (445)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCSCBEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCcccCCCeeecCCchhHHHHHHHHHHH
Confidence 45555555554 9999999995 55555566543
No 208
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=55.73 E-value=8.8 Score=39.17 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=32.3
Q ss_pred EEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEee
Q psy3968 927 EIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSID 966 (1080)
Q Consensus 927 ~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~ 966 (1080)
.++|++||.|++||.|+.. .+-..+|-+..+|+|.--.
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~d 100 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTD 100 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEES
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEe
Confidence 4689999999999999965 5788999999999976543
No 209
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=55.30 E-value=6.7 Score=41.26 Aligned_cols=67 Identities=18% Similarity=0.286 Sum_probs=46.0
Q ss_pred HHHHHHHHHHC-CCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCC
Q psy3968 481 KLLIGAIREKH-PDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLD 555 (1080)
Q Consensus 481 ~~lv~~l~~~~-p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d 555 (1080)
.++++.||+.+ +++++.+|.|-+.--.. .-.+.++|||+|..-.. .+ ..+...+..++..|...++.
T Consensus 51 ~~~v~~ir~~~~~~~~~dvhLmv~~p~~~--i~~~~~aGad~itvH~E----a~--~~~~~~i~~i~~~G~k~gva 118 (228)
T 3ovp_A 51 HPVVESLRKQLGQDPFFDMHMMVSKPEQW--VKPMAVAGANQYTFHLE----AT--ENPGALIKDIRENGMKVGLA 118 (228)
T ss_dssp HHHHHHHHHHHCSSSCEEEEEECSCGGGG--HHHHHHHTCSEEEEEGG----GC--SCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEEEeCCHHHH--HHHHHHcCCCEEEEccC----Cc--hhHHHHHHHHHHcCCCEEEE
Confidence 35788888886 78999999886544322 34567899999988432 21 24667788888777666543
No 210
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=54.76 E-value=3.9 Score=39.49 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=30.0
Q ss_pred CCcccCCCCeEEEEE---EecCCCeee---cCC-EEEEEEc
Q psy3968 914 PGQVGAPMPGSVMEI---RVKVGDKVE---KGA-ALVVLSA 947 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~---~v~~G~~V~---~g~-~~~~iea 947 (1080)
...|.||..|+|+++ +++.|+.|. .|+ .|+.|+.
T Consensus 74 ~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 74 AADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEI 114 (136)
T ss_dssp EEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEE
T ss_pred eEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEEE
Confidence 357999999999999 888999999 888 8888884
No 211
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=50.11 E-value=2.1e+02 Score=30.75 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=77.5
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEeCCCcccccHHHHHHHHHcCCcEeCCcHHHHHHhcCHHHHHHHHHHCCCCCCCCC
Q psy3968 19 PPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGT 98 (1080)
Q Consensus 19 ~~~~~yld~e~Ii~~a~~~~iDaVipg~g~lsE~~~~a~~l~~~gi~~iGps~eai~~~~DK~~~r~~l~~~GIpvp~~~ 98 (1080)
...+.+.+.+.+++.+++.++.+|+.-...-.-+..|.+.+++.|+.|- +-..+-+.+++.|+-+.++
T Consensus 102 ~~~DP~~~~g~~Le~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~-----------~eve~I~~A~~~gL~Ti~~- 169 (286)
T 2p10_A 102 NGTDPFMVMSTFLRELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYA-----------QEVEMIAEAHKLDLLTTPY- 169 (286)
T ss_dssp CTTCTTCCHHHHHHHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHH-----------HHHHHHHHHHHTTCEECCE-
T ss_pred CCcCCCcCHHHHHHHHHHhCCceEEECCCcccccchhhhhHhhcCCCHH-----------HHHHHHHHHHHCCCeEEEe-
Confidence 3456788899999999999999996544311123889999999998752 3345667889999999987
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEeCCC-CCCcCeEEECCHhHHHHHHHHHHHHHH
Q psy3968 99 PGPITTTEEAMEFCLKYGLPVIFKAAYG-GGGRGMRVVRKMEDVEENFQRASSEAK 153 (1080)
Q Consensus 99 ~~~v~s~ee~~~~~~~igfPvVVKP~~g-~Gg~GV~iv~s~eeL~~a~~~~~~~a~ 153 (1080)
+.|.+++.+.++--.-=+++=|-.- ++..|....-+.++..+.++++.+..+
T Consensus 170 ---v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~ 222 (286)
T 2p10_A 170 ---VFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAAR 222 (286)
T ss_dssp ---ECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHH
Confidence 7899999877643222244445432 244565555677775555555555444
No 212
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=48.12 E-value=11 Score=42.37 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=48.2
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCcCeEEECCHhHHHHHHHHHHHHH---HHhcCC
Q psy3968 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEA---KAAFGN 158 (1080)
Q Consensus 82 ~~r~~l~~~GIpvp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~GV~iv~s~eeL~~a~~~~~~~a---~~~~g~ 158 (1080)
+.++-.++.||...|+ +|||+..|.-|.||..|+|.+|+...=++.+..- +....-
T Consensus 264 kIr~KY~eygI~~~Pf---------------------V~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v 322 (432)
T 3k1t_A 264 KIRRKYAEYGVKQEPF---------------------VIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKV 322 (432)
T ss_dssp HHHHHHHHHTCCSCCC---------------------EEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCC
T ss_pred HHHHHHHHhCCCCCce---------------------EEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCcc
Confidence 3445578889998887 7999999999999999999999875433333221 111112
Q ss_pred CcEEEeeccCC
Q psy3968 159 GAMFIEKFIER 169 (1080)
Q Consensus 159 ~~vlVEeyI~G 169 (1080)
.++||||=|.-
T Consensus 323 ~~VIIQEGV~T 333 (432)
T 3k1t_A 323 SEVILQEGVYT 333 (432)
T ss_dssp CEEEEEECCCC
T ss_pred ceEEEecCcch
Confidence 47999998775
No 213
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=47.76 E-value=1.1e+02 Score=33.69 Aligned_cols=178 Identities=16% Similarity=0.198 Sum_probs=99.8
Q ss_pred cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccC
Q psy3968 340 AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419 (1080)
Q Consensus 340 ~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~ 419 (1080)
...|+.+.++ ..++.+-+...+...+.+-+...|+. .-|+.|.-....+.++... +..+++. +..
T Consensus 114 ~~dG~~v~~g--~~l~~v~G~a~~ll~~Er~aLN~L~~--~SGIAT~t~~~v~aa~g~~-------~~i~~TR----KT~ 178 (320)
T 3paj_A 114 VQDGDTLTPN--QTLCTLTGPARILLTGERNAMNFIQT--LSGCATATARYVQELKGTQ-------CRLLDTR----KTI 178 (320)
T ss_dssp SCTTCEECTT--CEEEEEEEEHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTSS-------CEEECCS----CCC
T ss_pred eCCCCEecCC--CEEEEEEecHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCC-------eEEEeec----CCC
Confidence 5678888776 68888877777777777777777765 4588777777777666432 2233321 111
Q ss_pred CcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccccCccChHHHHHHHHHHHHHCCCCceEEe
Q psy3968 420 PTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIH 499 (1080)
Q Consensus 420 ~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H 499 (1080)
+ -.+.+..|...+ .| |--. ++-..+.|-|||.- +..-..+.+.++++++..|..+|.+=
T Consensus 179 P---glR~l~kyAV~~--GG--g~nH-------------R~gL~d~vlikdnH-i~~~G~i~~Av~~ar~~~p~~kIeVE 237 (320)
T 3paj_A 179 P---GLRSALKYAVAC--GG--GYNH-------------RIGVFDAYLIKENH-IIACGGIRQAISTAKQLNPGKPVEVE 237 (320)
T ss_dssp T---TCHHHHHHHHHH--TT--CBCC-------------CSSSSSCEEECHHH-HHHHTSHHHHHHHHHHHSTTSCEEEE
T ss_pred c---cchHHHhhhHHh--cC--ccce-------------ecccchhhccHHHH-HHHhCCHHHHHHHHHHhCCCCeEEEE
Confidence 1 112233443221 12 1110 00011466677641 00000145677888888888787776
Q ss_pred eCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhc---CCCCCCCCHHHHHHHHH
Q psy3968 500 THDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG---SDIDTGLDLKDISAYSA 564 (1080)
Q Consensus 500 ~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~---~g~~~~~d~~~l~~~~~ 564 (1080)
+++ +.-...|+++|+|+|-.--.. ...+...+..++. ....-|++++.+.++++
T Consensus 238 Vdt-----ldea~eAl~aGaD~I~LDn~~------~~~l~~av~~l~~~v~ieaSGGIt~~~I~~~a~ 294 (320)
T 3paj_A 238 TET-----LAELEEAISAGADIIMLDNFS------LEMMREAVKINAGRAALENSGNITLDNLKECAE 294 (320)
T ss_dssp ESS-----HHHHHHHHHTTCSEEEEESCC------HHHHHHHHHHHTTSSEEEEESSCCHHHHHHHHT
T ss_pred ECC-----HHHHHHHHHcCCCEEEECCCC------HHHHHHHHHHhCCCCeEEEECCCCHHHHHHHHH
Confidence 665 356778999999998763311 1123344444431 12223789888877653
No 214
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=47.01 E-value=57 Score=35.31 Aligned_cols=138 Identities=19% Similarity=0.253 Sum_probs=82.0
Q ss_pred cCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCccccccC
Q psy3968 340 AFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419 (1080)
Q Consensus 340 ~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~~ 419 (1080)
...|+.+.++ ..++.+-....+.-.+.+-+...|+. .-|+.|......++++.+. +.+.++.
T Consensus 77 ~~dG~~v~~g--~~v~~i~G~~~~ll~~Er~~Ln~l~~--~SGIAT~t~~~v~~~~g~~-------~~i~~tR------- 138 (284)
T 1qpo_A 77 VEDGARVPPG--EALMTLEAQTRGLLTAERTMLNLVGH--LSGIATATAAWVDAVRGTK-------AKIRDTR------- 138 (284)
T ss_dssp CCTTCEECTT--CEEEEEEEEHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTSS-------CEEECCS-------
T ss_pred cCCCCEecCC--cEEEEEEEeHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC-------cEEEEec-------
Confidence 3466777665 57888877777777777777777776 4588777777777776333 2333331
Q ss_pred CcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCC--Ceeeeccc----cCccChHHHHHHHHHHHHHCCC
Q psy3968 420 PTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLG--KLINTFDM----AGLLKPRAAKLLIGAIREKHPD 493 (1080)
Q Consensus 420 ~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G--~~i~i~Dt----~G~~~P~~~~~lv~~l~~~~p~ 493 (1080)
....-.+.+..|... +.| + +.-+ +| +.+-|||- +| .+.+-++..|+..|.
T Consensus 139 Kt~Pglr~l~k~Av~--~GG--~-~nhR--------------~gl~d~vlikdnHi~~ag-----~i~~av~~ar~~~~~ 194 (284)
T 1qpo_A 139 KTLPGLRALQKYAVR--TGG--G-VNHR--------------LGLGDAALIKDNHVAAAG-----SVVDALRAVRNAAPD 194 (284)
T ss_dssp CCCTTCHHHHHHHHH--HTT--C-BCCC--------------CSSSSSEEECHHHHHHHS-----SHHHHHHHHHHHCTT
T ss_pred ccCCCchHHHhhhhh--hcC--c-cccc--------------ccchhhhcccHhHHHHcC-----CHHHHHHHHHHhCCC
Confidence 111112234444322 112 1 1001 22 34555542 23 256778888888885
Q ss_pred CceEEeeCCCCchhHHHHHHHHHcCCCEEee
Q psy3968 494 IPIHIHTHDTSGAGVASMIACAEAGADVVDV 524 (1080)
Q Consensus 494 ~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~ 524 (1080)
.+|++=+++ +.-...|+++|+|+|-.
T Consensus 195 ~~I~Vev~t-----~eea~eal~aGaD~I~L 220 (284)
T 1qpo_A 195 LPCEVEVDS-----LEQLDAVLPEKPELILL 220 (284)
T ss_dssp SCEEEEESS-----HHHHHHHGGGCCSEEEE
T ss_pred CCEEEEeCC-----HHHHHHHHHcCCCEEEE
Confidence 577777775 67888999999998744
No 215
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=46.95 E-value=2.7e+02 Score=30.36 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh
Q psy3968 480 AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ 546 (1080)
Q Consensus 480 ~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~ 546 (1080)
+..+|++|++.+ ++||++=+=+ ...+.+|+++|+++|+--. |.- .+.+-.+++...
T Consensus 93 v~pvI~~l~~~~-~vpISIDT~~-----~~Va~aAl~aGa~iINDVs-g~~----~~~m~~v~a~~g 148 (314)
T 3tr9_A 93 LLPVIDAIKKRF-PQLISVDTSR-----PRVMREAVNTGADMINDQR-ALQ----LDDALTTVSALK 148 (314)
T ss_dssp HHHHHHHHHHHC-CSEEEEECSC-----HHHHHHHHHHTCCEEEETT-TTC----STTHHHHHHHHT
T ss_pred HHHHHHHHHhhC-CCeEEEeCCC-----HHHHHHHHHcCCCEEEECC-CCC----chHHHHHHHHhC
Confidence 556677888776 8999996544 4556789999999997643 221 456666665543
No 216
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=46.32 E-value=2.5e+02 Score=30.41 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ 546 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~ 546 (1080)
.++..+|+++++. ++||++-+=+ ...+.+|+++|+++|+...++ ..+.+-.+++-..
T Consensus 90 ~Rv~pvI~~l~~~--~vpiSIDT~~-----~~Va~aAl~aGa~iINdVsg~-----~d~~m~~v~a~~~ 146 (294)
T 2dqw_A 90 RRLLPVLEAVLSL--GVPVSVDTRK-----PEVAEEALKLGAHLLNDVTGL-----RDERMVALAARHG 146 (294)
T ss_dssp HHHHHHHHHHHTT--CSCEEEECSC-----HHHHHHHHHHTCSEEECSSCS-----CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCeEEEECCC-----HHHHHHHHHhCCCEEEECCCC-----CChHHHHHHHHhC
Confidence 3455556666654 7999885443 455678999999999754432 3455555554443
No 217
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=45.15 E-value=8.5 Score=44.24 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=37.8
Q ss_pred cChHHHHHHHHHHHHHCCCCc-eEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 475 LKPRAAKLLIGAIREKHPDIP-IHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~-i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
..+..+.+| ++.+.+.| |.+|.|+|.|..-.++.++++.|+..+.+.
T Consensus 242 y~~e~~~~L----~~~v~~~P~LVlhghStDy~~~e~l~~~V~~GiaklNVg 289 (450)
T 3txv_A 242 YDRARAEKL----SATLGQLHGMVFEAHSTDYQTPDALRELVADGFAILKVG 289 (450)
T ss_dssp CCTTTTSHH----HHGGGTSTTCEEEESCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred CCHHHHHHH----HHHhccCCCEEEecCCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 344444444 44445678 999999999999999999999999999874
No 218
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=44.86 E-value=44 Score=36.95 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=63.6
Q ss_pred HHHHHHcCCChhhh--c----cccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCC---C----CCCH--------H
Q psy3968 991 CDLSVQVGMDVFRV--F----DSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSK---K----KYDL--------K 1049 (1080)
Q Consensus 991 ~~~a~~~gid~~~v--~----~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~--------~ 1049 (1080)
.++.+++|++..|+ + .--+|+..+...++.+|+.|..+-..+-|+-.-.||.+ | .++. +
T Consensus 33 ~~ilk~~G~n~vRlri~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~hysd~wadP~~q~~p~~W~~~~~~~~~~~~~~ 112 (334)
T 1fob_A 33 ETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTTDLGTLKWQLYN 112 (334)
T ss_dssp HHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEECCCCCccCHHHHHHHHHHHHHCCCEEEEEeccCCCCCCcccccCccccccCChHHHHHHHHH
Confidence 45788999999998 3 45577888888899999999999999988755566642 1 1221 4
Q ss_pred HHHHHHHHHHHcC--CcEEEEec---CCccCCC
Q psy3968 1050 YYQNLADELVKAG--THVLCIKV---RILLSPV 1077 (1080)
Q Consensus 1050 ~~~~~~~~~~~~g--~~~~~~kd---~~~~~p~ 1077 (1080)
|...++++|.+.| ++.++|=+ .|++-|.
T Consensus 113 yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~ 145 (334)
T 1fob_A 113 YTLEVCNTFAENDIDIEIISIGNEIRAGLLWPL 145 (334)
T ss_dssp HHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTT
T ss_pred HHHHHHHHHHhCCCCCCEEEEeecCcccccCCC
Confidence 4456777788877 48888877 5776553
No 219
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=44.71 E-value=18 Score=38.70 Aligned_cols=56 Identities=20% Similarity=0.139 Sum_probs=38.9
Q ss_pred eeeeccccCccChHH---HHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 465 LINTFDMAGLLKPRA---AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 465 ~i~i~Dt~G~~~P~~---~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
.+.+.++.|..+|.. ..++++.+|+.. ++||.+ ..|...++..+++.+|||.|=+.
T Consensus 176 ~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~v----G~GI~t~e~~~~~~~gADgvIVG 234 (262)
T 2ekc_A 176 FVSVTGTTGAREKLPYERIKKKVEEYRELC-DKPVVV----GFGVSKKEHAREIGSFADGVVVG 234 (262)
T ss_dssp EESSCC---------CHHHHHHHHHHHHHC-CSCEEE----ESSCCSHHHHHHHHTTSSEEEEC
T ss_pred EEecCCccCCCCCcCcccHHHHHHHHHhhc-CCCEEE----eCCCCCHHHHHHHHcCCCEEEEC
Confidence 445677888887754 789999999987 899887 78888888888899999887554
No 220
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=44.30 E-value=2.1e+02 Score=31.27 Aligned_cols=59 Identities=31% Similarity=0.322 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHh
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ 546 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~ 546 (1080)
.++..+|++|++.. ++||++-+=+ ...+.+|+++|+++|+--.++ ..-|.+..+++-..
T Consensus 71 ~Rv~pvI~~l~~~~-~vpiSIDT~~-----~~Va~aAl~aGa~iINDVsg~----~~d~~m~~v~a~~~ 129 (314)
T 2vef_A 71 QRVVPVIKAIRKES-DVLISIDTWK-----SQVAEAALAAGADLVNDITGL----MGDEKMPHVVAEAR 129 (314)
T ss_dssp HHHHHHHHHHHHHC-CCEEEEECSC-----HHHHHHHHHTTCCEEEETTTT----CSCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC-CceEEEeCCC-----HHHHHHHHHcCCCEEEECCCC----CCChHHHHHHHHcC
Confidence 34555667788876 8999985443 455678999999999754432 23467777765543
No 221
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=44.10 E-value=29 Score=36.85 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCCCCH
Q psy3968 482 LLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDL 556 (1080)
Q Consensus 482 ~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~~d~ 556 (1080)
.++++||+..|++++.+|.+-..--.. .-.+.++|||+|-.-.... +.+...+..++..|...|+.+
T Consensus 75 ~~v~~lr~~~p~~~ldvHLmv~~p~~~--i~~~~~aGAd~itvH~Ea~------~~~~~~i~~ir~~G~k~Gval 141 (246)
T 3inp_A 75 MVLKALRDYGITAGMDVHLMVKPVDAL--IESFAKAGATSIVFHPEAS------EHIDRSLQLIKSFGIQAGLAL 141 (246)
T ss_dssp HHHHHHHHHTCCSCEEEEEECSSCHHH--HHHHHHHTCSEEEECGGGC------SCHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHhCCCCeEEEEEeeCCHHHH--HHHHHHcCCCEEEEccccc------hhHHHHHHHHHHcCCeEEEEe
Confidence 678889998889999999995543222 3356799999998764321 356778888888887766544
No 222
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=42.12 E-value=13 Score=39.44 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=30.4
Q ss_pred cccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 916 ~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
.|.|+..|+|+.+--..| -| -+++|+--.=-..+.+.. .++.|+ +.|..|++|+++..
T Consensus 95 pV~A~~~G~V~~~g~~~~----~G-~~ViI~Hg~G~~t~Y~HL----~~i~Vk~Gd~V~~Gq~IG~vG~ 154 (245)
T 3tuf_B 95 DVSASLSGTVVKAEKDPV----LG-YVVEVEHADGLSTVYQSL----SEVSVEQGDKVKQNQVIGKSGK 154 (245)
T ss_dssp EEECSSCEEEEEEEEETT----TE-EEEEEECSTTEEEEEEEE----SEESCCTTCEECTTCEEEECBC
T ss_pred eEEeCcCeEEEEEEecCC----Cc-eEEEEEeCCCEEEEEecC----CccccCCCCEECCCCEEEEeCC
Confidence 588888888877643322 12 233333322222333332 234555 77777777777654
No 223
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=40.96 E-value=55 Score=36.15 Aligned_cols=86 Identities=24% Similarity=0.249 Sum_probs=63.6
Q ss_pred HHHHHHcCCChhhh------ccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCC----C-CC---------HHH
Q psy3968 991 CDLSVQVGMDVFRV------FDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKK----K-YD---------LKY 1050 (1080)
Q Consensus 991 ~~~a~~~gid~~~v------~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~---------~~~ 1050 (1080)
.++.+++|++..|| .+.-||...+..+++.+|+.|..+-.-+-|+-.-.+|++. . .+ .+|
T Consensus 33 ~~ilk~~G~N~VRi~~w~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~y 112 (332)
T 1hjs_A 33 ENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNY 112 (332)
T ss_dssp HHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEeeeeCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCCcCCccccCCccccccchHHHHHHHHHH
Confidence 45778899999998 3557788888889999999999999988886544455431 0 11 577
Q ss_pred HHHHHHHHHHcCC--cEEEEec---CCccCC
Q psy3968 1051 YQNLADELVKAGT--HVLCIKV---RILLSP 1076 (1080)
Q Consensus 1051 ~~~~~~~~~~~g~--~~~~~kd---~~~~~p 1076 (1080)
..+.+++|.+.|+ +.++|=. .|++-|
T Consensus 113 t~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~ 143 (332)
T 1hjs_A 113 TLDAANKLQNAGIQPTIVSIGNEIRAGLLWP 143 (332)
T ss_dssp HHHHHHHHHHTTCCCSEEEESSSGGGEETBT
T ss_pred HHHHHHHHHHcCCCCCEEEEeecccccccCc
Confidence 7888999998885 7777765 355544
No 224
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=40.94 E-value=2.1e+02 Score=31.00 Aligned_cols=177 Identities=14% Similarity=0.155 Sum_probs=105.7
Q ss_pred EEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCC
Q psy3968 333 IRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412 (1080)
Q Consensus 333 vr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~ 412 (1080)
+.+.. ....|+.+.++ ..++.+-+...+.-.+.+-+...|+. .-|+.|.-....+.++.. .+..+++.
T Consensus 84 ~~v~~-~~~dG~~v~~g--~~v~~i~G~a~~ll~~ER~aLN~L~~--~SGIAT~T~~~v~~~~~~-------~~~i~dTR 151 (300)
T 3l0g_A 84 VKYEI-HKKDGDITGKN--STLVSGEALAIYLLPIERVILNFIQH--ASGIASITRQFVDEVSGT-------KVKIRSTR 151 (300)
T ss_dssp EEEEE-CCCTTCEECSS--CEEEEEEEEHHHHGGGHHHHHHHHHH--HHHHHHHHHHHHHHTTTS-------SCEEECCS
T ss_pred eEEEE-EeCCCCEeeCC--CEEEEEEECHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCC-------CEEEeecC
Confidence 44443 35788888877 68888888777777777777777776 458877776666666543 23344431
Q ss_pred ccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccc----cCccChHHHHHHHHHHH
Q psy3968 413 PQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDM----AGLLKPRAAKLLIGAIR 488 (1080)
Q Consensus 413 ~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt----~G~~~P~~~~~lv~~l~ 488 (1080)
+..+ -.+.+..|...+ -| |--. ++-..+.|-|||- +|. +.+.|+.+|
T Consensus 152 ----KT~P---GlR~lekyAV~~--GG--g~nH-------------R~gL~D~vLIKdNHi~~~G~-----i~~Av~~ar 202 (300)
T 3l0g_A 152 ----KTTP---GLRMLDKYSVCI--GG--GESY-------------RDNLCDGVLIKDNHIASCGS-----ITLAIQRLR 202 (300)
T ss_dssp ----CCCT---TCHHHHHHHHHH--TT--CBCS-------------CSSTTSCEEECHHHHHHHSC-----HHHHHHHHH
T ss_pred ----ccCh---hhhHHHHHHHHh--cC--Cccc-------------ccCCcceEEEcHhHHHHhCC-----HHHHHHHHH
Confidence 1111 122333442221 11 1100 1112257778873 443 456678888
Q ss_pred HHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHH---HHHHHhc---CCCCCCCCHHHHHHH
Q psy3968 489 EKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGA---VVASLQG---SDIDTGLDLKDISAY 562 (1080)
Q Consensus 489 ~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~---~v~~l~~---~g~~~~~d~~~l~~~ 562 (1080)
+..|..+|++=+.+ +.-...|+++|+|+|-.- |.+.++ .+..+++ ....-|++++.+.++
T Consensus 203 ~~~p~~kIeVEv~t-----l~e~~eAl~aGaDiImLD---------n~s~~~l~~av~~~~~~v~leaSGGIt~~~i~~~ 268 (300)
T 3l0g_A 203 KNLKNEYIAIECDN-----ISQVEESLSNNVDMILLD---------NMSISEIKKAVDIVNGKSVLEVSGCVNIRNVRNI 268 (300)
T ss_dssp HHSSSCCEEEEESS-----HHHHHHHHHTTCSEEEEE---------SCCHHHHHHHHHHHTTSSEEEEESSCCTTTHHHH
T ss_pred HhCCCCCEEEEECC-----HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHhhcCceEEEEECCCCHHHHHHH
Confidence 88888899888876 478889999999998663 333444 4444442 122236777777765
Q ss_pred HH
Q psy3968 563 SA 564 (1080)
Q Consensus 563 ~~ 564 (1080)
++
T Consensus 269 A~ 270 (300)
T 3l0g_A 269 AL 270 (300)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 225
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=40.91 E-value=54 Score=37.26 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=42.4
Q ss_pred CC-CeeeeccccCccChHHHHHHHHHHHHHCCCCceEE-eeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 462 LG-KLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHI-HTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 462 ~G-~~i~i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~-H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
.| +.|.| ++ +...|....++++++++.+|++||.+ ..+ ...-+..+.++|||.|.++
T Consensus 164 ~G~d~i~i-~~-~~g~~~~~~e~i~~ir~~~~~~pviv~~v~-----~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 164 AHVDILVI-DS-AHGHSTRIIELIKKIKTKYPNLDLIAGNIV-----TKEAALDLISVGADCLKVG 222 (404)
T ss_dssp TTCSEEEE-CC-SCCSSHHHHHHHHHHHHHCTTCEEEEEEEC-----SHHHHHHHHTTTCSEEEEC
T ss_pred CCCCEEEE-eC-CCCChHHHHHHHHHHHHHCCCCeEEEcCCC-----cHHHHHHHHhcCCCEEEEC
Confidence 45 45555 32 23468889999999999998889886 333 3566778889999999994
No 226
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=40.74 E-value=15 Score=41.08 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.4
Q ss_pred EEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEee
Q psy3968 927 EIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSID 966 (1080)
Q Consensus 927 ~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~ 966 (1080)
+++|++||.|++||.|+.=. +|.|..+|+|.+..
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~ 95 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVK 95 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEeec
Confidence 47899999999999999877 89999999985443
No 227
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=39.32 E-value=19 Score=38.97 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=11.1
Q ss_pred CCcccCCCCeEEEEE
Q psy3968 914 PGQVGAPMPGSVMEI 928 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~ 928 (1080)
...|.|+..|+|+.+
T Consensus 190 GtpV~A~~~G~V~~~ 204 (282)
T 2hsi_A 190 GTPIKAPAAGKVILI 204 (282)
T ss_dssp TCEEECSSCEEEEEE
T ss_pred CCeEEeccCeEEEEE
Confidence 346888888888765
No 228
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=38.71 E-value=59 Score=36.43 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHCCCCceEE-eeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 477 PRAAKLLIGAIREKHPDIPIHI-HTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 477 P~~~~~lv~~l~~~~p~~~i~~-H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
+..+.+.|+++|+.+|+++|.. -. .....+..++++|||.|.+++.
T Consensus 125 ~~~~~e~I~~ir~~~~~~~Vi~G~V-----~T~e~A~~a~~aGaD~I~Vg~g 171 (361)
T 3r2g_A 125 AKYVGKTLKSLRQLLGSRCIMAGNV-----ATYAGADYLASCGADIIKAGIG 171 (361)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEEE-----CSHHHHHHHHHTTCSEEEECCS
T ss_pred cHhHHHHHHHHHHhcCCCeEEEcCc-----CCHHHHHHHHHcCCCEEEEcCC
Confidence 5567889999999988888876 22 3466788999999999999543
No 229
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=38.44 E-value=32 Score=34.95 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCChhhhccccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
.+.+.+.+.|+|...+.+. ..-++++..++++++.|..+...+ .+| .| ..+.++++.++|+|.||+
T Consensus 68 ~~~~~~~~~Gad~v~v~~~-~~~~~~~~~~~~~~~~g~~~~v~~------~~~----~t---~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 68 FESQLLFDAGADYVTVLGV-TDVLTIQSCIRAAKEAGKQVVVDM------ICV----DD---LPARVRLLEEAGADMLAV 133 (211)
T ss_dssp HHHHHHHHTTCSEEEEETT-SCHHHHHHHHHHHHHHTCEEEEEC------TTC----SS---HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCCEEEEeCC-CChhHHHHHHHHHHHcCCeEEEEe------cCC----CC---HHHHHHHHHHcCCCEEEE
Confidence 4567888999988877654 444677888889999987665421 122 23 356778888899999887
Q ss_pred e
Q psy3968 1069 K 1069 (1080)
Q Consensus 1069 k 1069 (1080)
-
T Consensus 134 ~ 134 (211)
T 3f4w_A 134 H 134 (211)
T ss_dssp E
T ss_pred c
Confidence 4
No 230
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=37.21 E-value=4.2e+02 Score=28.61 Aligned_cols=173 Identities=14% Similarity=0.196 Sum_probs=0.0
Q ss_pred ceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeec
Q psy3968 331 MGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFID 410 (1080)
Q Consensus 331 ~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie 410 (1080)
+++.+.. ....|+.+.++ ..+..+-+-......+.+-+...|+. .-|+.|.-....++++....
T Consensus 83 ~~~~v~~-~~~dG~~v~~g--~~~~~v~G~~~~~l~~Er~aLn~l~~--~SgIAT~t~~~v~~~~gt~v----------- 146 (296)
T 1qap_A 83 DDVRLTW-HVDDGDAIHAN--QTVFELQGPARVLLTGERTALNFVQT--LSGVASEVRRYVGLLAGTQT----------- 146 (296)
T ss_dssp TSSEEEE-SCCTTCEECTT--CEEEEEEEEHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTTTTSSC-----------
T ss_pred CCeEEEE-EcCCCCEecCC--CEEEEEEEcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCe-----------
Q ss_pred CCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccc----------cCccChHHH
Q psy3968 411 ENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDM----------AGLLKPRAA 480 (1080)
Q Consensus 411 ~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt----------~G~~~P~~~ 480 (1080)
..+...........+..|...+- +|--. +..+.|+ +|. +
T Consensus 147 ---~i~~tRkt~P~~r~~e~~Av~~G----G~~~h-------------------r~~l~d~vlikdnhi~~~Gt-----i 195 (296)
T 1qap_A 147 ---QLLDTRKTLPGLRTALKYAVLCG----GGANH-------------------RLGLTDAFLIKENHIIASGS-----V 195 (296)
T ss_dssp ---EEECCSCCCTTCHHHHHHHHHHH----TCBCC-------------------CSSSSSCEEECHHHHHHHSS-----H
T ss_pred ---EEEEeCCCCcccHHHHHHHHHHC----Cchhh-------------------ccccccEEEEEcCCeeccCC-----H
Q ss_pred HHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCC------CC
Q psy3968 481 KLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDT------GL 554 (1080)
Q Consensus 481 ~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~------~~ 554 (1080)
.+-++++++.+|..++.+=+|+ +.-...|+++|+|+|-. .|.+.+.+-.+.+..+-.. ||
T Consensus 196 ~~ai~~~r~~~~~~kI~vev~t-----lee~~eA~~aGaD~I~l---------d~~~~e~l~~~v~~~~~~~~I~ASGGI 261 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEVEN-----LDELDDALKAGADIIML---------DNFNTDQMREAVKRVNGQARLEVSGNV 261 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEESS-----HHHHHHHHHTTCSEEEE---------SSCCHHHHHHHHHTTCTTCCEEECCCS
T ss_pred HHHHHHHHHhCCCCcEEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhCCCCeEEEECCC
Q ss_pred CHHHHHHHHH
Q psy3968 555 DLKDISAYSA 564 (1080)
Q Consensus 555 d~~~l~~~~~ 564 (1080)
+++.+.++.+
T Consensus 262 t~~~i~~~a~ 271 (296)
T 1qap_A 262 TAETLREFAE 271 (296)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
No 231
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=36.80 E-value=23 Score=38.45 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=34.6
Q ss_pred CCcccCCCCeEEEEEEecC-CCeeecCCEEEEEEcc-CCceeEecCCCeEEeEeeee--eeeecCceeEEecC
Q psy3968 914 PGQVGAPMPGSVMEIRVKV-GDKVEKGAALVVLSAM-KMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTNY 982 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~-G~~V~~g~~~~~ieam-Km~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~~ 982 (1080)
...|.|+..|+|+.+--.. | -|- +++|+-- .-...+.+.. .++.|+ +.|+.|++|+++..
T Consensus 195 GtpV~A~adG~Vv~ag~~~~g----~Gn-~ViI~H~~g~~~T~YaHL----s~i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 195 NSPVYSLTDGTVVQAGWSNYG----GGN-QVTIKEANSNNYQWYMHN----NRLTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp TCEEECSSSEEEEEEEEETTT----TEE-EEEEEETTSSEEEEEEEE----SEECCCTTCEECTTCEEEECCC
T ss_pred CCeEEeCcCeEEEEEEEecCC----CCe-EEEEEECCCCEEEEEEcC----CccccCCcCEECCCCEEEEECC
Confidence 3568899999998775432 1 122 2333321 1122334433 345666 88999999888864
No 232
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=36.79 E-value=29 Score=38.71 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 483 lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
.|..|++.+|++||++=.|.+.+ ..+..++|+-+||++|+.=+
T Consensus 184 aI~~Lk~~fp~lpVG~SdHt~g~-~~~~~~AAvAlGA~vIEkH~ 226 (350)
T 3g8r_A 184 RIKTLRQQYAGVRIGYSTHEDPD-LMEPIMLAVAQGATVFEKHV 226 (350)
T ss_dssp HHHHHHHHCTTSEEEEEECCCSS-CCHHHHHHHHTTCCEEEEEB
T ss_pred HHHHHHHHCCCCCEEcCCCCCCC-ccHHHHHHHHcCCCEEEEec
Confidence 36788999989999997788643 23456899999999987643
No 233
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=36.08 E-value=1.7e+02 Score=29.97 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCC
Q psy3968 479 AAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMS 530 (1080)
Q Consensus 479 ~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg 530 (1080)
...++++.+++.+|+.++.+-+|+ ...+..+.++|+|+|..++.|+.
T Consensus 119 ~~~~~i~~i~~~~~~~~v~~~~~t-----~~ea~~a~~~Gad~i~~~v~g~~ 165 (234)
T 1yxy_A 119 DIASFIRQVKEKYPNQLLMADIST-----FDEGLVAHQAGIDFVGTTLSGYT 165 (234)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred cHHHHHHHHHHhCCCCeEEEeCCC-----HHHHHHHHHcCCCEEeeeccccC
Confidence 457899999998888888877664 34478899999999976676663
No 234
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=35.69 E-value=51 Score=43.54 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=45.5
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcH
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSM 538 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~ 538 (1080)
..+|.+..++|+.||+..|++||.+-.=.+.|.+. -+..+.++|||.|.+ +|.++|++..++
T Consensus 1009 ~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~-~A~~a~kAGAD~IvV--sG~eGGTgasp~ 1070 (1520)
T 1ofd_A 1009 IYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGT-IAAGVAKANADIIQI--SGHDGGTGASPL 1070 (1520)
T ss_dssp CSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHH-HHHHHHHTTCSEEEE--ECTTCCCSSEEH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHH-HHHHHHHcCCCEEEE--eCCCCccCCCcc
Confidence 35678889999999999888998776544445443 446788999999985 666666665443
No 235
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=35.39 E-value=69 Score=34.87 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHcCCChhhhc-----------cccCCccChHHHHHHHHhc----CCeEEEEEE-EecCCCCC---CCCC
Q psy3968 985 NVVYKFCDLSVQVGMDVFRVF-----------DSLNYLPNLILGMEAAGKA----GGVVEAAIS-YTGDVSDP---SKKK 1045 (1080)
Q Consensus 985 ~~~~~~~~~a~~~gid~~~v~-----------~~ln~~~n~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~---~~~~ 1045 (1080)
+.+.+..+.+.++||.-.-+| .+.|+--=+..|++++|+. +.+...|+| ||..=-+- ...+
T Consensus 64 d~l~~~~~~~~~lGi~~v~LFgvp~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vitDvcLc~YT~HGHcGil~~g~V 143 (328)
T 1w1z_A 64 DRAVEECKELYDLGIQGIDLFGIPEQKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVKDGII 143 (328)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECCSSCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSEESSSCE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCceeeccCCcC
Confidence 445566778899999888777 4778877788999999975 335555555 55320000 0001
Q ss_pred ---CCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1046 ---YDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1046 ---~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
-|++.+.+.|--..++|||+++=-|
T Consensus 144 ~ND~Tl~~L~k~Als~A~AGADiVAPSd 171 (328)
T 1w1z_A 144 LNDETVEVLQKMAVSHAEAGADFVSPSD 171 (328)
T ss_dssp EHHHHHHHHHHHHHHHHHHTCSEEEECS
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEeccc
Confidence 2678889999999999999999666
No 236
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=35.36 E-value=79 Score=35.47 Aligned_cols=50 Identities=24% Similarity=0.149 Sum_probs=37.8
Q ss_pred cccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEee
Q psy3968 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDV 524 (1080)
Q Consensus 470 Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~ 524 (1080)
||++ ..|....+.++.+++.+|++++.... ......+..++++|||.|.+
T Consensus 127 dta~-G~~~~~~~~I~~ik~~~p~v~Vi~G~----v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 127 DSSH-GHSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp ECSC-TTSHHHHHHHHHHHHHCTTCEEEEEE----ECSHHHHHHHHHHTCSEEEE
T ss_pred eCCC-CCCHHHHHHHHHHHHhcCCCceEeee----eCCHHHHHHHHHcCCCEEEE
Confidence 4443 24667888999999999888876642 23456778899999999998
No 237
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=35.28 E-value=1.2e+02 Score=35.73 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEee
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDV 524 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~ 524 (1080)
.+..+.++++++++.+|++++....=. ....+..++++|||.|.+
T Consensus 280 ~~~~v~~~i~~i~~~~~~~~vi~g~v~----t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 280 HSQGVIDKVKEVRAKYPSLNIIAGNVA----TAEATKALIEAGANVVKV 324 (511)
T ss_dssp TSHHHHHHHHHHHHHCTTSEEEEEEEC----SHHHHHHHHHHTCSEEEE
T ss_pred chhhhhhHHHHHHHhCCCceEEeeeec----cHHHHHHHHHhCCCEEEE
Confidence 456788999999999988887764322 345678899999999997
No 238
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=34.65 E-value=30 Score=36.84 Aligned_cols=13 Identities=31% Similarity=0.186 Sum_probs=9.7
Q ss_pred cccCCCCeEEEEE
Q psy3968 916 QVGAPMPGSVMEI 928 (1080)
Q Consensus 916 ~v~aPm~G~v~~~ 928 (1080)
.|.|+..|+|+.+
T Consensus 141 pV~A~~~G~V~~~ 153 (252)
T 3nyy_A 141 PVVSMTDGVVTEK 153 (252)
T ss_dssp EEECSSCEEEEEE
T ss_pred eEEeccCEEEEEE
Confidence 5777888877765
No 239
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=34.34 E-value=25 Score=39.43 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCcccCCCCeEEEEEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEeEeeee--eeeecCceeEEec
Q psy3968 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS--MLLRGANAVGYTN 981 (1080)
Q Consensus 914 ~~~v~aPm~G~v~~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~~~~~~--~~v~~g~~l~~~~ 981 (1080)
...|.|+..|+|+.+--..| -|- +++|+--.--..+.+.. .++.|+ +.|+.||+|+++.
T Consensus 242 gt~V~A~~~G~V~~~~~~~~----~G~-~v~i~h~~g~~t~Y~hl----~~~~v~~G~~V~~G~~Ig~~G 302 (361)
T 2gu1_A 242 GAPVYSTGDGKVIVVRKHPY----AGN-YLVIEHNSVYKTRYLHL----DKILVKKGQLVKRGQKIALAG 302 (361)
T ss_dssp TCEEECSSSEEEEEEEEETT----TEE-EEEEECSSSEEEEEEEE----SEECCCTTCEECTTCEEEECC
T ss_pred CCeEEEeeCEEEEEeEEeCC----CCe-EEEEEECCCEEEEEeCc----CccccCCcCEECCCCEEEEEC
Confidence 45699999999987643221 121 22233222122222222 223444 6677777776665
No 240
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=34.03 E-value=36 Score=36.95 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHcCCChhhhc-----------cccCCccChHHHHHHHHhc----CCeEEEEEE-EecC----CCCCCCC
Q psy3968 985 NVVYKFCDLSVQVGMDVFRVF-----------DSLNYLPNLILGMEAAGKA----GGVVEAAIS-YTGD----VSDPSKK 1044 (1080)
Q Consensus 985 ~~~~~~~~~a~~~gid~~~v~-----------~~ln~~~n~~~~~~~~~~~----~~~~~~~~~-~~~~----~~~~~~~ 1044 (1080)
+.+.+..+.+.++||.-.-+| .++|+---+..|++++|+. ..++..|+| ||.. +.+. ..
T Consensus 58 d~l~~~~~~~~~lGi~~v~LFgvp~~Kd~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~-g~ 136 (323)
T 1l6s_A 58 KHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCE-HG 136 (323)
T ss_dssp GGHHHHHHHHHHHTCCEEEEEEECSSCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBCS-SS
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCccccccCCCCCcHHHHHHHHHHHCCCeEEEEeeeccccCCCCceEeccC-Cc
Confidence 345566778899999887777 4789888999999999975 345566666 6642 0010 01
Q ss_pred C---CCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1045 K---YDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1045 ~---~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
+ -|++.+.+.|--..++|||+++=-|
T Consensus 137 V~ND~Tl~~Lak~Als~A~AGAdiVAPSd 165 (323)
T 1l6s_A 137 VDNDATLENLGKQAVVAAAAGADFIAPSA 165 (323)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTCSEEEECS
T ss_pred CccHHHHHHHHHHHHHHHHcCCCeEeccc
Confidence 1 3578888888889999999999666
No 241
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=32.72 E-value=2e+02 Score=31.49 Aligned_cols=132 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred CC-Ceeeecc-ccCccChHHHHHHH--------HHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCC
Q psy3968 462 LG-KLINTFD-MAGLLKPRAAKLLI--------GAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSG 531 (1080)
Q Consensus 462 ~G-~~i~i~D-t~G~~~P~~~~~lv--------~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~ 531 (1080)
+| +.|.+.| .+|.++|....+++ +.+++. |++|+.+|| .|. -...-.-.+.|+|.++.--
T Consensus 191 aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~---~g~-~~~l~~l~~~g~d~~~~d~----- 260 (338)
T 2eja_A 191 AGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFF---RGS-SSFIDLAVDYRADALSVDW----- 260 (338)
T ss_dssp TTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEE---SSH-HHHHHHHTTSCCSEEECCT-----
T ss_pred hCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEc---CCc-HHHHHHHHHcCCCEEEeCC-----
Q ss_pred CCCCCcHHHHHHHHhcCCCCCCCCHHHH----HHHHHHHHHHHhccCCCCccCCCCcCCcceeccCCCCchhhcHHHHHH
Q psy3968 532 MTSQPSMGAVVASLQGSDIDTGLDLKDI----SAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAY 607 (1080)
Q Consensus 532 ~~g~~~~e~~v~~l~~~g~~~~~d~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~iPGG~~snl~~ql~ 607 (1080)
..+++.+...+ +.-+.-++|...| .++.+.++++...+.+-.+. ..+.+..+.. .+|---+..+.+-.+
T Consensus 261 ---~~dl~~~~~~~-~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~~~g~--I~~~g~gi~~-~~p~en~~a~v~~v~ 333 (338)
T 2eja_A 261 ---SVDIPELFKIY-DKGFQGNLEPAVLYASEEVIEEKTLGLLRRIPVKTRY--VFNLGHGLAP-DMELEKVKYLVDLVK 333 (338)
T ss_dssp ---TSCHHHHHHHC-CSEEECCBCGGGGGSCHHHHHHHHHHHHTTCCCSSSE--EBCBSSCCCT-TSCHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHhC-CeEEEECCCHHHhcCCHHHHHHHHHHHHHHhCCCCCe--EEeCCCCCCC-CCCHHHHHHHHHHHH
Q ss_pred HCC
Q psy3968 608 SLG 610 (1080)
Q Consensus 608 ~~g 610 (1080)
+.|
T Consensus 334 ~~~ 336 (338)
T 2eja_A 334 SFP 336 (338)
T ss_dssp TCC
T ss_pred Hhc
No 242
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=32.56 E-value=51 Score=43.48 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=43.5
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCC
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQ 535 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~ 535 (1080)
..+|.+..++|+.||+..|++||.+-.=.+.|.+. -+..+.++|||.|.. +|.++|++.
T Consensus 974 ~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~-~A~~a~~AGAD~IvV--sG~eGGTga 1032 (1479)
T 1ea0_A 974 IYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGT-IAAGVAKANADIILI--SGNSGGTGA 1032 (1479)
T ss_dssp CSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHH-HHHHHHHTTCSEEEE--ECTTCCCSS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHH-HHHHHHHcCCcEEEE--cCCCCCCCC
Confidence 35678889999999999988998776544445443 356788999999985 566666543
No 243
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=31.27 E-value=45 Score=34.60 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCC--CceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCC
Q psy3968 482 LLIGAIREKHPD--IPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSD 549 (1080)
Q Consensus 482 ~lv~~l~~~~p~--~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g 549 (1080)
++|+.|++.+|+ +.+.+|+| |-|.-++.. +.++|||++-+-. .|+ ...++..+..++..|
T Consensus 47 ~~v~~l~~~~p~~~iflDlKl~-Dip~t~~~~--~~~~Gad~vtVH~--~~g---~~~l~~a~~~~~~~g 108 (221)
T 3exr_A 47 ELVEVLRSLFPDKIIVADTKCA-DAGGTVAKN--NAVRGADWMTCIC--SAT---IPTMKAARKAIEDIN 108 (221)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-SCHHHHHHH--HHTTTCSEEEEET--TSC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCcEEEEEEee-ccHHHHHHH--HHHcCCCEEEEec--cCC---HHHHHHHHHHHHhcC
Confidence 468888888754 67899999 567666654 6889999965532 222 223555666665433
No 244
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=30.79 E-value=1.2e+02 Score=33.72 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCChhhhc---------------cccCCccChHHHHHHHHhc-CCeEEEEEEEecCCCCCCCCCCCHHH
Q psy3968 987 VYKFCDLSVQVGMDVFRVF---------------DSLNYLPNLILGMEAAGKA-GGVVEAAISYTGDVSDPSKKKYDLKY 1050 (1080)
Q Consensus 987 ~~~~~~~a~~~gid~~~v~---------------~~ln~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1050 (1080)
...+.+++.+.|.|...|= ..+|+.+-+...++++++. +.-+-.-+. .+..+ ..+.+.
T Consensus 72 ~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR--~g~~~----~~~~~~ 145 (350)
T 3b0p_A 72 LAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMR--LGLEG----KETYRG 145 (350)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEE--SCBTT----CCCHHH
T ss_pred HHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEe--cCcCc----cccHHH
Confidence 4455567778887755443 2478888888888888874 543322222 22122 256778
Q ss_pred HHHHHHHHHHcCCcEEEEec
Q psy3968 1051 YQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1051 ~~~~~~~~~~~g~~~~~~kd 1070 (1080)
.+++|+.++++|+|.|.+-.
T Consensus 146 ~~~~a~~l~~aG~d~I~V~~ 165 (350)
T 3b0p_A 146 LAQSVEAMAEAGVKVFVVHA 165 (350)
T ss_dssp HHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEec
Confidence 89999999999999999976
No 245
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=30.59 E-value=1e+02 Score=36.06 Aligned_cols=48 Identities=23% Similarity=0.190 Sum_probs=37.1
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
.+..+.++++++++.+|++||..-. ......+..++++|||.|.+..+
T Consensus 255 ~~~~~~~~i~~ir~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~Vg~g 302 (496)
T 4fxs_A 255 HSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKVGIG 302 (496)
T ss_dssp TSHHHHHHHHHHHHHCTTCCEEEEE----ECSHHHHHHHHHHTCSEEEECSS
T ss_pred cchHHHHHHHHHHHHCCCceEEEcc----cCcHHHHHHHHHhCCCEEEECCC
Confidence 4567889999999999999987721 23445678889999999997653
No 246
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=30.48 E-value=60 Score=35.88 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCC----CCCC-------CCCcHHHHHH
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM----SGMT-------SQPSMGAVVA 543 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~gl----g~~~-------g~~~~e~~v~ 543 (1080)
.++.+..+++...|-.+|+..|-.-++ .++......|+.+||+.+..++..- |-.. ++.+.++++.
T Consensus 253 ~~~~e~l~~ia~~Rl~lp~~~I~a~~~---~~g~~~~~~~l~~Gan~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~ 329 (350)
T 3t7v_A 253 KSNLSELKIISVLRLMFPKRLIPASLD---LEGIDGMVLRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDIKSVVR 329 (350)
T ss_dssp CCCCCHHHHHHHHHHHSTTSBCEEEHH---HHHHHHHHHHHHTTCCEEEEECCSSCCCCCSSCTTTTCSSCCCCHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCcCcccccc---ccChhHHHHHHhcCCceecCCCCCCCCCCCCCCCcccchhccCCHHHHHH
Confidence 466778888888888888754444322 3444678899999999999998776 2111 2468899999
Q ss_pred HHhcCCCCC
Q psy3968 544 SLQGSDIDT 552 (1080)
Q Consensus 544 ~l~~~g~~~ 552 (1080)
.++..|+.+
T Consensus 330 ~i~~~G~~~ 338 (350)
T 3t7v_A 330 RLEIMGMKP 338 (350)
T ss_dssp HHHHHTCEE
T ss_pred HHHHcCCcc
Confidence 999888765
No 247
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=30.48 E-value=32 Score=36.48 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=72.8
Q ss_pred eeecCceeEEecCCchhHHHHHHHHHHcCCChhhhccccCCccC--hHHHHHHHHhcCCeEEEEEEEecCCCCC-CCCCC
Q psy3968 970 LLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPN--LILGMEAAGKAGGVVEAAISYTGDVSDP-SKKKY 1046 (1080)
Q Consensus 970 ~v~~g~~l~~~~~~~~~~~~~~~~a~~~gid~~~v~~~ln~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 1046 (1080)
.|..|..++..-+....++.+++.++++|.|...|=|-.=++.+ ....|+.+++.|..+..-+ +. -+| .....
T Consensus 70 ~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v~~Ev---G~-k~~~~~~~~ 145 (251)
T 1qwg_A 70 KVYPGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEV---GK-KMPDKDKQL 145 (251)
T ss_dssp EEEECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEEE---CC-SSHHHHTTC
T ss_pred eEECCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEEeeec---cc-cCCcccCCC
Confidence 46666666655555567889999999999998888777766655 3446889999999885444 22 222 11257
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1047 DLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1047 ~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
+++-+++.++.-+++||+-+-|--
T Consensus 146 ~~~~~I~~~~~~LeAGA~~ViiEa 169 (251)
T 1qwg_A 146 TIDDRIKLINFDLDAGADYVIIEG 169 (251)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CHHHHHHHHHHHHHCCCcEEEEee
Confidence 899999999999999999998866
No 248
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=30.43 E-value=1.4e+02 Score=31.06 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=43.6
Q ss_pred eccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCC
Q psy3968 468 TFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMS 530 (1080)
Q Consensus 468 i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg 530 (1080)
+-|+.....|....++++.+++. ++.+..-+|+ ......|.++|+|+|=+++.|+.
T Consensus 106 ~l~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t 161 (229)
T 3q58_A 106 AFDASFRSRPVDIDSLLTRIRLH--GLLAMADCST-----VNEGISCHQKGIEFIGTTLSGYT 161 (229)
T ss_dssp EEECCSSCCSSCHHHHHHHHHHT--TCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred EECccccCChHHHHHHHHHHHHC--CCEEEEecCC-----HHHHHHHHhCCCCEEEecCccCC
Confidence 45777677899999999999874 6777776664 56678899999999977666653
No 249
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=29.70 E-value=27 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCChhhhccccCCccChH
Q psy3968 989 KFCDLSVQVGMDVFRVFDSLNYLPNLI 1015 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~~ln~~~n~~ 1015 (1080)
.++++|+++|||+..|--+=.+-|-.+
T Consensus 5 ~ar~la~e~gidl~~v~gtG~~gri~k 31 (40)
T 2eq8_C 5 SIRRLARELGVDLTRLRGTGLAGRITE 31 (40)
T ss_dssp HHHHHHHHHTCCGGGCCCCSTTSCCCH
T ss_pred HHHHHHHHhCCChhhcCCCCCCCceeH
Confidence 345599999999987754444434333
No 250
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=29.68 E-value=82 Score=36.71 Aligned_cols=48 Identities=29% Similarity=0.348 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
.+....+.++++++.+|++|+.+- .++....+..+.++|||.|+++..
T Consensus 261 ~~~~~~e~i~~i~~~~p~~pvi~g----~~~t~e~a~~l~~~G~d~I~v~~~ 308 (494)
T 1vrd_A 261 HSRRVIETLEMIKADYPDLPVVAG----NVATPEGTEALIKAGADAVKVGVG 308 (494)
T ss_dssp SSHHHHHHHHHHHHHCTTSCEEEE----EECSHHHHHHHHHTTCSEEEECSS
T ss_pred chHHHHHHHHHHHHHCCCceEEeC----CcCCHHHHHHHHHcCCCEEEEcCC
Confidence 566788999999999988998763 255566778889999999999553
No 251
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=28.90 E-value=50 Score=36.83 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 484 IGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 484 v~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
|..|++.+|++||++=.|.+ | ....++|+-+||++|+.=.
T Consensus 198 i~~lk~~f~~lpVg~sdHt~-G--~~~~~AAvAlGA~iIEkH~ 237 (349)
T 2wqp_A 198 MNDLSEAFPDAIIGLSDHTL-D--NYACLGAVALGGSILERHF 237 (349)
T ss_dssp HHHHHHHCTTSEEEEECCSS-S--SHHHHHHHHHTCCEEEEEB
T ss_pred HHHHHHHCCCCCEEeCCCCC-c--HHHHHHHHHhCCCEEEeCC
Confidence 77889998889999877764 4 7888999999999987644
No 252
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=28.89 E-value=30 Score=28.13 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCChhhhcc
Q psy3968 989 KFCDLSVQVGMDVFRVFD 1006 (1080)
Q Consensus 989 ~~~~~a~~~gid~~~v~~ 1006 (1080)
.+|++|+++|||+..|=-
T Consensus 13 aaRrlA~e~gIdl~~V~G 30 (58)
T 3rnm_E 13 AVRNLAMENNIKLSEVVG 30 (58)
T ss_dssp HHHHHHHHTTCCGGGCCC
T ss_pred HHHHHHHHcCCCHHHCCC
Confidence 445599999999988753
No 253
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.68 E-value=5.7e+02 Score=27.42 Aligned_cols=184 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred cceEEEcCCccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeee
Q psy3968 330 GMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFI 409 (1080)
Q Consensus 330 ~~gvr~d~~~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fi 409 (1080)
++.+.+.. ....|+.+.++ ..++.+-+...+.-.+.+-+...|+. .-|+.|.-....+.++.. .+..+
T Consensus 72 ~~~~~v~~-~~~dG~~v~~g--~~v~~i~G~a~~ll~~ER~aLN~L~~--~SGIAT~t~~~v~~~~g~-------~~~i~ 139 (287)
T 3tqv_A 72 DKNIQITW-LYSDAQKVPAN--ARIFELKGNVRSILTAERTILNFIQM--LSGTATVTNKLVKLISQY-------KTKLL 139 (287)
T ss_dssp CTTCEEEE-SSCTTCEECTT--CEEEEEEEEHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTS-------SCEEE
T ss_pred CCCeEEEE-EeCCCCEeeCC--CEEEEEEEcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCC-------CeEEE
Q ss_pred cCCccccccCCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccccCccChHHHHHHHHHHHH
Q psy3968 410 DENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRAAKLLIGAIRE 489 (1080)
Q Consensus 410 e~~~elf~~~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~G~~~P~~~~~lv~~l~~ 489 (1080)
++ -+..+-....++...+.+-..-..++--. .|-||| .=+.--..+.+.++.+|+
T Consensus 140 dT----RKT~PglR~l~kyAV~~GGg~nHR~gL~d--------------------~vlikd-NHi~~~G~i~~Av~~ar~ 194 (287)
T 3tqv_A 140 DT----RKTIPGFRLAQKYAVRCGGGFNHRIGLFD--------------------AYLIKE-NHIRSAGGIAKAVTKAKK 194 (287)
T ss_dssp CC----SCCCTTCHHHHHHHHHHTTCBCCCSSSSS--------------------SEEECT-TTC----CHHHHHHHHHH
T ss_pred ee----cccCcchHHHHHHHHHhcCchheeccCcc--------------------EEEEeH-HHHHHhCCHHHHHHHHHh
Q ss_pred HCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCC------CCCHHHHHHHH
Q psy3968 490 KHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDT------GLDLKDISAYS 563 (1080)
Q Consensus 490 ~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~------~~d~~~l~~~~ 563 (1080)
..|..+|++=+++ +.-...|+++|+|+|-. -|.+.+++-.+.+...-.. |++++.+.+++
T Consensus 195 ~~~~~~IeVEv~t-----l~ea~eAl~aGaD~I~L---------Dn~~~~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a 260 (287)
T 3tqv_A 195 LDSNKVVEVEVTN-----LDELNQAIAAKADIVML---------DNFSGEDIDIAVSIARGKVALEVSGNIDRNSIVAIA 260 (287)
T ss_dssp HCTTSCEEEEESS-----HHHHHHHHHTTCSEEEE---------ESCCHHHHHHHHHHHTTTCEEEEESSCCTTTHHHHH
T ss_pred hCCCCcEEEEeCC-----HHHHHHHHHcCCCEEEE---------cCCCHHHHHHHHHhhcCCceEEEECCCCHHHHHHHH
Q ss_pred H
Q psy3968 564 A 564 (1080)
Q Consensus 564 ~ 564 (1080)
+
T Consensus 261 ~ 261 (287)
T 3tqv_A 261 K 261 (287)
T ss_dssp T
T ss_pred H
No 254
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=27.68 E-value=32 Score=25.28 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=14.3
Q ss_pred HHHHHHHcCCChhhhcccc
Q psy3968 990 FCDLSVQVGMDVFRVFDSL 1008 (1080)
Q Consensus 990 ~~~~a~~~gid~~~v~~~l 1008 (1080)
++++|+++|||+..|--.=
T Consensus 6 ar~la~e~gidl~~v~gtG 24 (40)
T 2eq7_C 6 AERLMQEKGVSPAEVQGTG 24 (40)
T ss_dssp HHHHHHHTTCCTTTSCCCS
T ss_pred HHHHHHHhCCChhhcCCCC
Confidence 4559999999988765443
No 255
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=27.02 E-value=60 Score=39.36 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHHHHHHc--CCcEeCCcHHHHHHhcCHHHHHHHHHHCC-CC-CCCCCCCCCCCHHHHHHHHHHhCCcEEEEeCCCCCCc
Q psy3968 55 FAQAVLDA--GIRFIGPSPYVVQQMGDKVAARQAAIDSG-VP-IVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGR 130 (1080)
Q Consensus 55 ~a~~l~~~--gi~~iGps~eai~~~~DK~~~r~~l~~~G-Ip-vp~~~~~~v~s~ee~~~~~~~igfPvVVKP~~g~Gg~ 130 (1080)
+.+++.+. .+.++.|... .++.||..+.-+...+. -| .++.+ ...... +..- ..|+||..|..|.
T Consensus 488 ~~~~l~~~~~~v~~ieP~wk--~LlsNKaiLalLW~l~p~hp~LLpt~---f~~~~~----~~~~--~yV~KPi~gReG~ 556 (652)
T 2vob_A 488 LCDLLLGDDWEILYFEPMWK--VIPSNKAILPMIYHNHPEHPAILKAE---YELTDE----LRKH--GYAKKPIVGRVGS 556 (652)
T ss_dssp HHHHHSSSCTTSEEESCGGG--GTTTSTTHHHHHHHHCTTCTTBCCEE---SSCCHH----HHHH--CEEEEECC-----
T ss_pred HHHHHhcCCCceEEeChhHH--HhhcCHHHHHHHHhcccCCCCCCchh---hcCCCc----cccC--CeEeccCCCCCCC
Confidence 44556566 7778865543 45789998887777532 12 22332 121112 1112 4999999999999
Q ss_pred CeEEECCHhHHHHHHHHHHHHHHHhcCCCcEEEeeccCCC
Q psy3968 131 GMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERP 170 (1080)
Q Consensus 131 GV~iv~s~eeL~~a~~~~~~~a~~~~g~~~vlVEeyI~G~ 170 (1080)
||.+.....+.. .. ....++++.+++|+|++=+
T Consensus 557 nV~I~~~~~~~~---~~----~~g~y~~~~~IyQe~~~lp 589 (652)
T 2vob_A 557 NVIITSGDGVVH---AE----SGGKYGKRNMIYQQLFELK 589 (652)
T ss_dssp -----------------------------CEEEEECCC--
T ss_pred CEEEEcCCchhh---hh----cccccCCCCeEEEecccCC
Confidence 999986533221 11 1223556789999999854
No 256
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=26.78 E-value=1.4e+02 Score=33.92 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=56.8
Q ss_pred HHHHHHcCCChhhhc---c-----------ccCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCC---C----CCCH-
Q psy3968 991 CDLSVQVGMDVFRVF---D-----------SLNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSK---K----KYDL- 1048 (1080)
Q Consensus 991 ~~~a~~~gid~~~v~---~-----------~ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~- 1048 (1080)
.++.+++|++..||- + --||+..+...++.+|+.|.++-.-+-|+-.-.||++ | .++.
T Consensus 54 ~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak~~GLkVlldfHysD~WadPg~Q~~P~aW~~~~~~ 133 (399)
T 1ur4_A 54 FKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWANLNFE 133 (399)
T ss_dssp HHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTTCCHH
T ss_pred HHHHHHCCCCEEEEeeecCCcccccCccCCCCCCHHHHHHHHHHHHHCCCEEEEEeccCCccCCcccccCccccccCCHH
Confidence 346778999999972 1 1267778888999999999999999888765556753 1 1232
Q ss_pred -------HHHHHHHHHHHHcCC--cEEEEec
Q psy3968 1049 -------KYYQNLADELVKAGT--HVLCIKV 1070 (1080)
Q Consensus 1049 -------~~~~~~~~~~~~~g~--~~~~~kd 1070 (1080)
+|=..+++.|.+.|+ +.++|=+
T Consensus 134 ~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGN 164 (399)
T 1ur4_A 134 DKKTALYQYTKQSLKAMKAAGIDIGMVQVGN 164 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 344467777878886 6777765
No 257
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=26.69 E-value=36 Score=25.15 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=17.3
Q ss_pred HHHHHHHcCCChhhhccccCCccChH
Q psy3968 990 FCDLSVQVGMDVFRVFDSLNYLPNLI 1015 (1080)
Q Consensus 990 ~~~~a~~~gid~~~v~~~ln~~~n~~ 1015 (1080)
++++|+++|||+..|--.=.+-|-.+
T Consensus 7 ar~la~e~gidl~~v~gtG~~gri~k 32 (41)
T 2eq9_C 7 ARKLARELGIPIEEVPGSGPLGRVRV 32 (41)
T ss_dssp HHHHHHHTTCCGGGSCCCSTTCCBCH
T ss_pred HHHHHHHcCCChhhcCCCCCCCcccH
Confidence 45599999999987754444434333
No 258
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=25.91 E-value=65 Score=32.59 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCC
Q psy3968 481 KLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTG 553 (1080)
Q Consensus 481 ~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~ 553 (1080)
.++++.+|+.++++||.+|.+-..|.-. -...|+++|||.|-.-..+ +...++.++..++..|....
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~~-~~~~~~~~Gad~v~v~~~~-----~~~~~~~~~~~~~~~g~~~~ 107 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDGGHF-ESQLLFDAGADYVTVLGVT-----DVLTIQSCIRAAKEAGKQVV 107 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHH-HHHHHHHTTCSEEEEETTS-----CHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccchHH-HHHHHHhcCCCEEEEeCCC-----ChhHHHHHHHHHHHcCCeEE
Confidence 4788999998778999888776666432 2678899999998774321 11234667777776665544
No 259
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=25.51 E-value=61 Score=33.29 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCC--CceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHHhcCCCCCC
Q psy3968 481 KLLIGAIREKHPD--IPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTG 553 (1080)
Q Consensus 481 ~~lv~~l~~~~p~--~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l~~~g~~~~ 553 (1080)
.++|+.||+.+++ +.+.+|.|+ .+.- -+-.+.++|||.|-+-..+ . ...++.++..++..|...+
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d-~p~~--~~~~~~~aGad~i~vh~~~--~---~~~~~~~~~~~~~~g~~~~ 113 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTD-GGAI--LSRMAFEAGADWITVSAAA--H---IATIAACKKVADELNGEIQ 113 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECS-CHHH--HHHHHHHHTCSEEEEETTS--C---HHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhCCCCcEEEEEeecc-cHHH--HHHHHHhcCCCEEEEecCC--C---HHHHHHHHHHHHHhCCccc
Confidence 4678999998765 445778884 4422 3467889999998543322 1 1124566677776666543
No 260
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=25.40 E-value=41 Score=38.73 Aligned_cols=30 Identities=40% Similarity=0.646 Sum_probs=0.0
Q ss_pred cccCCCCeEEEEE-------------------------------EecCCCeeecCCEEEEE
Q psy3968 916 QVGAPMPGSVMEI-------------------------------RVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 916 ~v~aPm~G~v~~~-------------------------------~v~~G~~V~~g~~~~~i 945 (1080)
.|.||-.|.|.++ +++.||.|++||+|++|
T Consensus 340 ~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i 400 (436)
T 3h5q_A 340 EYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTI 400 (436)
T ss_dssp EEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEE
T ss_pred EEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEE
No 261
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=25.26 E-value=1.5e+02 Score=34.45 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeec
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s 525 (1080)
.+..+.++++++++.+|++|+..-. ......+..++++|||.|.+.
T Consensus 253 ~~~~~~~~v~~i~~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 253 HSKGVIERVRWVKQTFPDVQVIGGN----IATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp SBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEEC
T ss_pred cchhHHHHHHHHHHHCCCceEEEee----eCcHHHHHHHHHcCCCEEEEC
Confidence 4677889999999999888887621 234566788999999999973
No 262
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=25.17 E-value=48 Score=35.87 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=73.8
Q ss_pred CeEEEEEEecCCCeeecCCEEEEEEcc--------CCceeEecCCCeEEeEeeee-eeeecCceeEEec--CCchhHHHH
Q psy3968 922 PGSVMEIRVKVGDKVEKGAALVVLSAM--------KMEMVVQAPVQGVVKSIDAS-MLLRGANAVGYTN--YPDNVVYKF 990 (1080)
Q Consensus 922 ~G~v~~~~v~~G~~V~~g~~~~~ieam--------Km~~~i~a~~~G~v~~~~~~-~~v~~g~~l~~~~--~~~~~~~~~ 990 (1080)
|+.-++|++++|+.|++||+|+.++.- +.-..+-...+|+-+...-- +.++ |..+.... ...|-++.+
T Consensus 69 ~~~~v~~~~~dG~~v~~g~~v~~i~G~~~~ll~~Er~~Ln~l~~~SGIAT~t~~~v~~~~-g~~~~i~~tRKt~Pglr~l 147 (284)
T 1qpo_A 69 NGYRVLDRVEDGARVPPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVR-GTKAKIRDTRKTLPGLRAL 147 (284)
T ss_dssp TSEEEEEECCTTCEECTTCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TSSCEEECCSCCCTTCHHH
T ss_pred CCEEEEEEcCCCCEecCCcEEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEecccCCCchHH
Confidence 345678999999999999999998852 11112222233332221111 3333 33322221 233444555
Q ss_pred HHHHHHc-CCChhhh--cccc----CCc---cChHHHHHHHHhcCC--eEEEEEEEecCCCCCCCCCCCHHHHHHHHHHH
Q psy3968 991 CDLSVQV-GMDVFRV--FDSL----NYL---PNLILGMEAAGKAGG--VVEAAISYTGDVSDPSKKKYDLKYYQNLADEL 1058 (1080)
Q Consensus 991 ~~~a~~~-gid~~~v--~~~l----n~~---~n~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1058 (1080)
-++|..- |.+-.|. .|.. |++ .+++.+++++++... .+|.- ++| .+-++|.
T Consensus 148 ~k~Av~~GG~~nhR~gl~d~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Ve-------------v~t----~eea~ea 210 (284)
T 1qpo_A 148 QKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVE-------------VDS----LEQLDAV 210 (284)
T ss_dssp HHHHHHHTTCBCCCCSSSSSEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEE-------------ESS----HHHHHHH
T ss_pred HhhhhhhcCcccccccchhhhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEE-------------eCC----HHHHHHH
Confidence 5565544 3333332 3444 443 246788999988876 33332 344 4788888
Q ss_pred HHcCCcEEEEec
Q psy3968 1059 VKAGTHVLCIKV 1070 (1080)
Q Consensus 1059 ~~~g~~~~~~kd 1070 (1080)
+++|+|.|++-.
T Consensus 211 l~aGaD~I~LDn 222 (284)
T 1qpo_A 211 LPEKPELILLDN 222 (284)
T ss_dssp GGGCCSEEEEET
T ss_pred HHcCCCEEEECC
Confidence 899999998754
No 263
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=24.75 E-value=65 Score=36.87 Aligned_cols=80 Identities=10% Similarity=0.184 Sum_probs=53.3
Q ss_pred cChHHHHHHHHHHHHHCCCCce-----EEeeCCCCc----hhHHHHHHHHHcCCCEEeeccCCCCCCCCCCcHHHHHHHH
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPI-----HIHTHDTSG----AGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASL 545 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i-----~~H~H~t~G----la~an~l~Ai~aG~~~vd~s~~glg~~~g~~~~e~~v~~l 545 (1080)
.+++++..+.+++++.-..+++ -+-.|.|.| .+++.++-+..+|+.+.=-+-.+++..+| -...|
T Consensus 50 et~eEiag~a~aM~~~~~~l~~~~~~~~vD~~gTGGdG~niSt~~a~vvAa~Gv~VaKhGnR~~ss~~G------saDvL 123 (423)
T 2dsj_A 50 LDPEETLWLTETMARSGKVLDLSGLPHPVDKHSSGGVGDKVSLVVGPILAASGCTFAKMSGRGLAHTGG------TIDKL 123 (423)
T ss_dssp CCHHHHHHHHHHHHTSSBCCCCTTSSSBEEEEEESSSCCSTHHHHHHHHHTTTCBEEEECCCCBTTBCC------HHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCCccccCCceeEecCCCCCccHHHHHHHHHHhCCCcEEEECCCCCCCCcc------HHHHH
Confidence 5788888888888875322221 244444444 45666677778899998888888887777 23456
Q ss_pred hcC-CCCCCCCHHHHH
Q psy3968 546 QGS-DIDTGLDLKDIS 560 (1080)
Q Consensus 546 ~~~-g~~~~~d~~~l~ 560 (1080)
+.. |+...++.+.+.
T Consensus 124 EaL~Gv~i~l~~e~~~ 139 (423)
T 2dsj_A 124 ESVPGWRGEMTEAEFL 139 (423)
T ss_dssp TTSTTCCCCCCHHHHH
T ss_pred HhCCCCCCCCCHHHHH
Confidence 667 777777765544
No 264
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=24.44 E-value=70 Score=34.90 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHcCCChhhhc-------------cccCCccChHHHHHHHHhc----CCeEEEEEE-EecCCCCCCCCC-
Q psy3968 985 NVVYKFCDLSVQVGMDVFRVF-------------DSLNYLPNLILGMEAAGKA----GGVVEAAIS-YTGDVSDPSKKK- 1045 (1080)
Q Consensus 985 ~~~~~~~~~a~~~gid~~~v~-------------~~ln~~~n~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~- 1045 (1080)
+.+.+..+.+.++||.-.-+| .++|+---+..|++++|+. ..++..|+| ||.. -. +.-+
T Consensus 59 d~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vitDvcLc~YT~H-GH-cGil~ 136 (330)
T 1pv8_A 59 KRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSH-GH-CGLLS 136 (330)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC--------------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCC-Cc-eeEEC
Confidence 445566778888898866666 2567777889999999965 345666666 5532 10 0001
Q ss_pred --------CCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1046 --------YDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1046 --------~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
-|++.+.+.|--..++|||+|+=-|
T Consensus 137 ~~g~v~ND~Tl~~La~~Als~A~AGAdiVAPSd 169 (330)
T 1pv8_A 137 ENGAFRAEESRQRLAEVALAYAKAGCQVVAPSD 169 (330)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCCcCccHHHHHHHHHHHHHHHHcCCCeeeccc
Confidence 2567788888888899999998665
No 265
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=24.42 E-value=43 Score=38.50 Aligned_cols=30 Identities=43% Similarity=0.673 Sum_probs=0.0
Q ss_pred cccCCCCeEEEEE-------------------------------EecCCCeeecCCEEEEE
Q psy3968 916 QVGAPMPGSVMEI-------------------------------RVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 916 ~v~aPm~G~v~~~-------------------------------~v~~G~~V~~g~~~~~i 945 (1080)
.|.||-.|.|.++ +++.||.|++||+|++|
T Consensus 337 ~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i 397 (433)
T 1brw_A 337 TVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATI 397 (433)
T ss_dssp EEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEE
T ss_pred EEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEE
No 266
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=24.41 E-value=89 Score=34.22 Aligned_cols=59 Identities=10% Similarity=-0.081 Sum_probs=43.7
Q ss_pred hhccccC---CccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q psy3968 1003 RVFDSLN---YLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCI 1068 (1080)
Q Consensus 1003 ~v~~~ln---~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 1068 (1080)
++++.++ +.+....+++.+++.|..+...+-+.. |..|.+...+.++.+.++|++.+.|
T Consensus 166 ~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~-------p~et~e~~~~~~~~l~~l~~~~i~i 227 (348)
T 3iix_A 166 VLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGL-------PGQTIDDLVDDLLFLKEHDFDMVGI 227 (348)
T ss_dssp HHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESC-------TTCCHHHHHHHHHHHHHHTCSEECC
T ss_pred HHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeC-------CCCCHHHHHHHHHHHHhcCCCEEee
Confidence 4555555 456667777888899986555555443 4689999999999999999987654
No 267
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=24.22 E-value=1.4e+02 Score=32.54 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=48.6
Q ss_pred HHHHHcCCChhhhccccC-Cc------cChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCH-HHHHHHHHHHHHcCC
Q psy3968 992 DLSVQVGMDVFRVFDSLN-YL------PNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDL-KYYQNLADELVKAGT 1063 (1080)
Q Consensus 992 ~~a~~~gid~~~v~~~ln-~~------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 1063 (1080)
+.|.+.|.|...+-=++. |- .+++..++++++.|..+..= +|.....- +.-++. ++...-+++..++|+
T Consensus 115 e~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~-~~~~g~~v--~~~~~~~~~v~~aa~~a~~lGa 191 (304)
T 1to3_A 115 QAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIE-PVVRPPRC--GDKFDREQAIIDAAKELGDSGA 191 (304)
T ss_dssp HHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEE-EEECCCSS--CSCCCHHHHHHHHHHHHTTSSC
T ss_pred HHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEE-EECCCCcc--ccCCChhHHHHHHHHHHHHcCC
Confidence 357777888777533333 22 66777777888888865443 55432110 012455 777777999999999
Q ss_pred cEEEEe
Q psy3968 1064 HVLCIK 1069 (1080)
Q Consensus 1064 ~~~~~k 1069 (1080)
|.|+++
T Consensus 192 D~iKv~ 197 (304)
T 1to3_A 192 DLYKVE 197 (304)
T ss_dssp SEEEEC
T ss_pred CEEEeC
Confidence 999886
No 268
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=24.21 E-value=74 Score=35.13 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=37.9
Q ss_pred CCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1009 NYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1009 n~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
|+.|-+..-+++++++= .. -|++-.+..+......+.+-++.+|+.|++.|+|.|.+=+
T Consensus 192 nr~r~~~eiv~avr~~v-~~--pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~ 250 (338)
T 1z41_A 192 NRYRFLREIIDEVKQVW-DG--PLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSS 250 (338)
T ss_dssp HHHHHHHHHHHHHHHHC-CS--CEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred hhHHHHHHHHHHHHHHc-CC--cEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 33444566667777653 22 2333333222212246888999999999999999999865
No 269
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=23.45 E-value=1.8e+02 Score=32.61 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
....+.|+++++.+ ++||.+-. .-.|+....+..+.++|||.|+++-.
T Consensus 192 ~~~~~~I~~l~~~~-~~PVivK~-vg~g~s~e~A~~l~~aGad~I~V~g~ 239 (365)
T 3sr7_A 192 RSWKKHLSDYAKKL-QLPFILKE-VGFGMDVKTIQTAIDLGVKTVDISGR 239 (365)
T ss_dssp HHHHHHHHHHHHHC-CSCEEEEE-CSSCCCHHHHHHHHHHTCCEEECCCB
T ss_pred HHHHHHHHHHHHhh-CCCEEEEE-CCCCCCHHHHHHHHHcCCCEEEEeCC
Confidence 35668899999998 89998884 23567788899999999999997643
No 270
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.39 E-value=62 Score=35.44 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred eeeeccccC---ccChHHHHHHHHHHHHHCCCCceEEee-CCCCchhHHHHHHHHHcCCCEEeeccCCC
Q psy3968 465 LINTFDMAG---LLKPRAAKLLIGAIREKHPDIPIHIHT-HDTSGAGVASMIACAEAGADVVDVAVDSM 529 (1080)
Q Consensus 465 ~i~i~Dt~G---~~~P~~~~~lv~~l~~~~p~~~i~~H~-H~t~Gla~an~l~Ai~aG~~~vd~s~~gl 529 (1080)
.|.++=|.| .++.++=.++++...+..+.+||-.|+ +++.--++..+..|-++|||.+=+ +.++
T Consensus 45 Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv-~~P~ 112 (313)
T 3dz1_A 45 GVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMI-APPP 112 (313)
T ss_dssp EEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE-CCCT
T ss_pred EEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEE-CCCC
Confidence 444444444 488899999999988877678988877 678888899999999999999966 5555
No 271
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=23.12 E-value=49 Score=38.47 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=0.0
Q ss_pred cccCCCCeEE-----------------------------EEEEecCCCeeecCCEEEEE
Q psy3968 916 QVGAPMPGSV-----------------------------MEIRVKVGDKVEKGAALVVL 945 (1080)
Q Consensus 916 ~v~aPm~G~v-----------------------------~~~~v~~G~~V~~g~~~~~i 945 (1080)
.|.||-.|.| +.++++.||.|++||+|++|
T Consensus 374 ~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i 432 (474)
T 1uou_A 374 ELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRV 432 (474)
T ss_dssp EEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEE
T ss_pred EEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEE
No 272
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=22.79 E-value=2.6e+02 Score=29.66 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=35.7
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHc--CCCEEeecc
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEA--GADVVDVAV 526 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~a--G~~~vd~s~ 526 (1080)
...++++.+++..+++.. ++||.+-+= -.....+|+++ |+++|+.-.
T Consensus 51 v~~~ee~~rvv~~i~~~~-~~pisIDT~-----~~~v~~aAl~a~~Ga~iINdvs 99 (262)
T 1f6y_A 51 QDKVSAMEWLVEVTQEVS-NLTLCLDST-----NIKAIEAGLKKCKNRAMINSTN 99 (262)
T ss_dssp -CHHHHHHHHHHHHHTTC-CSEEEEECS-----CHHHHHHHHHHCSSCEEEEEEC
T ss_pred CChHHHHHHHHHHHHHhC-CCeEEEeCC-----CHHHHHHHHhhCCCCCEEEECC
Confidence 446788999999999865 899998554 24566788888 999997443
No 273
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=22.70 E-value=2.5e+02 Score=28.34 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCC
Q psy3968 478 RAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529 (1080)
Q Consensus 478 ~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~gl 529 (1080)
....++++.+++.+|+.++..-+|+ ......+.++|+|.|-++..|.
T Consensus 104 ~~~~~~i~~~~~~~~~~~v~~~~~t-----~~e~~~~~~~G~d~i~~~~~g~ 150 (223)
T 1y0e_A 104 ETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGY 150 (223)
T ss_dssp SCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTS
T ss_pred cCHHHHHHHHHHhCCCceEEecCCC-----HHHHHHHHHcCCCEEEeCCCcC
Confidence 3567899999999888888776664 4456778999999997665554
No 274
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=22.63 E-value=2.3e+02 Score=29.33 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=42.6
Q ss_pred eccccCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCC
Q psy3968 468 TFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529 (1080)
Q Consensus 468 i~Dt~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~gl 529 (1080)
+-|+....+|....++++.+++. ++.+..-+|+ ......|.++|+|+|=+++.|+
T Consensus 106 ~l~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~ 160 (232)
T 3igs_A 106 AVDGTARQRPVAVEALLARIHHH--HLLTMADCSS-----VDDGLACQRLGADIIGTTMSGY 160 (232)
T ss_dssp EEECCSSCCSSCHHHHHHHHHHT--TCEEEEECCS-----HHHHHHHHHTTCSEEECTTTTS
T ss_pred EECccccCCHHHHHHHHHHHHHC--CCEEEEeCCC-----HHHHHHHHhCCCCEEEEcCccC
Confidence 44666667898899999999864 6777776665 5667889999999997666665
No 275
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=22.44 E-value=9.9 Score=42.46 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=36.2
Q ss_pred EEEEEecCCCeeecCCEEEEEEccC-----CceeEecCCCeEEeEeeeeeeeecCceeEEe
Q psy3968 925 VMEIRVKVGDKVEKGAALVVLSAMK-----MEMVVQAPVQGVVKSIDASMLLRGANAVGYT 980 (1080)
Q Consensus 925 v~~~~v~~G~~V~~g~~~~~ieamK-----m~~~i~a~~~G~v~~~~~~~~v~~g~~l~~~ 980 (1080)
++.-.++.|+.|++||+|+.+-.-. -..+|.||.+|+|......-.|..|+.--++
T Consensus 274 ~~~~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g~r~~p~V~~g~~~~~~ 334 (341)
T 1yw4_A 274 NLADSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPGLRAGIVVEPARLPSRL 334 (341)
T ss_dssp CSCTTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCSSSEEEEEEEEECCCC--
T ss_pred EEeecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceeeecccceEEecCchhhh
Confidence 3333458999999999999876643 4557999999999877766556666554443
No 276
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=22.26 E-value=78 Score=34.23 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHHHHHCCCCceEE-eeCCC----------Cc---hhHHHHHHHHHcCCC--EEeecc
Q psy3968 484 IGAIREKHPDIPIHI-HTHDT----------SG---AGVASMIACAEAGAD--VVDVAV 526 (1080)
Q Consensus 484 v~~l~~~~p~~~i~~-H~H~t----------~G---la~an~l~Ai~aG~~--~vd~s~ 526 (1080)
+..+|+.++++||.+ ++|.. .| +-...+++|+.+||| +|+.=.
T Consensus 186 i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~ 244 (285)
T 3sz8_A 186 FRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHP 244 (285)
T ss_dssp HHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEES
T ss_pred HHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEecc
Confidence 556788887799999 88873 34 236678899999999 776644
No 277
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=22.21 E-value=68 Score=35.58 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=34.5
Q ss_pred hHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1014 LILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
+...++++++.= .. -|.+-.+..+....-.+.+-++.+|++|+++|+|.|.+=+
T Consensus 197 ~~eiv~avr~~v-~~--pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~ 250 (340)
T 3gr7_A 197 LGEVIDAVREVW-DG--PLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSS 250 (340)
T ss_dssp HHHHHHHHHHHC-CS--CEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHhc-CC--ceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 445566666543 22 2333333222111246788999999999999999999976
No 278
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=22.17 E-value=1.7e+02 Score=33.89 Aligned_cols=47 Identities=26% Similarity=0.274 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
.+....++++.+++.+|++|+..-. ......+..++++|||.|+++.
T Consensus 257 ~~~~~~~~i~~l~~~~p~~pvi~G~----v~t~~~a~~~~~~Gad~I~vg~ 303 (491)
T 1zfj_A 257 HSAGVLRKIAEIRAHFPNRTLIAGN----IATAEGARALYDAGVDVVKVGI 303 (491)
T ss_dssp TCHHHHHHHHHHHHHCSSSCEEEEE----ECSHHHHHHHHHTTCSEEEECS
T ss_pred cchhHHHHHHHHHHHCCCCcEeCCC----ccCHHHHHHHHHcCCCEEEECc
Confidence 4556788999999999888886321 1234566688899999999853
No 279
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=22.04 E-value=2.4e+02 Score=30.19 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=60.3
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHH-HHcCCCEEeeccCCC--CCCC-CC--CcHHHHHHHHhc
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIAC-AEAGADVVDVAVDSM--SGMT-SQ--PSMGAVVASLQG 547 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~A-i~aG~~~vd~s~~gl--g~~~-g~--~~~e~~v~~l~~ 547 (1080)
.+.|....+++..+|++.|++.|.+-+....++.-. - +. .+..-++...+++.+ +... -| +.++.++..++.
T Consensus 59 s~d~~~~~e~~~~IR~~~pd~ii~~Ttg~~~~~~e~-R-~~~~~~~Pe~aSl~~gs~Nf~~~v~~N~~~~~~~~~~~~~e 136 (275)
T 3no5_A 59 TSNPDRFALVLEGIRKHAPGMITQVSTGGRSGAGNE-R-GAMLSLRPDMASLATGSVNFPTRVYDNPPELVDWLAAEMKT 136 (275)
T ss_dssp ECCHHHHHHHHHHHHHHSTTCEEEECCCCCTTCCGG-G-GTTGGGCCSEEEEECSCEECSSSEECCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHH-H-hhHhhcCCCEEEecCcccccccccccCCHHHHHHHHHHHHH
Confidence 577899999999999998898888866543333111 1 11 234556666555443 3221 12 245777788888
Q ss_pred CCCCCC---CCHHHHHHHHHHHHH
Q psy3968 548 SDIDTG---LDLKDISAYSAYWEQ 568 (1080)
Q Consensus 548 ~g~~~~---~d~~~l~~~~~~~~~ 568 (1080)
.|+.+. +|...+..+..++++
T Consensus 137 ~Gi~pE~e~fd~g~l~~~~~l~~~ 160 (275)
T 3no5_A 137 YGIKPEVEAFDLSMIFQAAAMQAA 160 (275)
T ss_dssp TTCEEEEEESSTHHHHHHHHHHHH
T ss_pred cCCeeEEEEEcHHHHHHHHHHHHC
Confidence 887765 588888887777665
No 280
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=21.76 E-value=1.4e+02 Score=33.30 Aligned_cols=49 Identities=8% Similarity=0.002 Sum_probs=38.7
Q ss_pred ccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 474 LLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 474 ~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
...|.-..+.++++++.+ ++||.+-.= +....+..|+++|||.|.++-.
T Consensus 199 ~~d~~~~w~~i~~lr~~~-~~PvivK~v----~~~e~A~~a~~~GaD~I~vsn~ 247 (352)
T 3sgz_A 199 FPKASFCWNDLSLLQSIT-RLPIILKGI----LTKEDAELAMKHNVQGIVVSNH 247 (352)
T ss_dssp CCCTTCCHHHHHHHHHHC-CSCEEEEEE----CSHHHHHHHHHTTCSEEEECCG
T ss_pred ccCCCCCHHHHHHHHHhc-CCCEEEEec----CcHHHHHHHHHcCCCEEEEeCC
Confidence 455666778899999998 789887643 3467788999999999998754
No 281
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=21.55 E-value=1.2e+02 Score=35.50 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeecc
Q psy3968 476 KPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526 (1080)
Q Consensus 476 ~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~ 526 (1080)
.|....++++++++.+|++||....= .....+..+.++|||.|+++.
T Consensus 279 ~~~~~~~~i~~i~~~~~~~pvi~~~v----~t~~~a~~l~~aGad~I~vg~ 325 (514)
T 1jcn_A 279 NSVYQIAMVHYIKQKYPHLQVIGGNV----VTAAQAKNLIDAGVDGLRVGM 325 (514)
T ss_dssp CSHHHHHHHHHHHHHCTTCEEEEEEE----CSHHHHHHHHHHTCSEEEECS
T ss_pred cchhHHHHHHHHHHhCCCCceEeccc----chHHHHHHHHHcCCCEEEECC
Confidence 56667899999999998899876421 335567888999999999944
No 282
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.41 E-value=29 Score=37.95 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=50.0
Q ss_pred CeeeeccccC---ccChHHHHHHHHHHHHHC-CCCceEEee-CCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 464 KLINTFDMAG---LLKPRAAKLLIGAIREKH-PDIPIHIHT-HDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 464 ~~i~i~Dt~G---~~~P~~~~~lv~~l~~~~-p~~~i~~H~-H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
+.|.++-|.| .++.++-.++++...+.. +.+||-.|+ +++.--++..+..|-++|||.+=...-
T Consensus 51 ~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 51 DGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp SEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred CEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4455555554 478889999999888775 368988887 678888899999999999999887653
No 283
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=21.36 E-value=3e+02 Score=30.01 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=43.8
Q ss_pred cChHHHHHHHHHHHHHCCCCceEE-eeCCCCchhHHHHHHHHHcCCC---EEeeccCCCCCCCCCCcHHHHHHHHhcCC
Q psy3968 475 LKPRAAKLLIGAIREKHPDIPIHI-HTHDTSGAGVASMIACAEAGAD---VVDVAVDSMSGMTSQPSMGAVVASLQGSD 549 (1080)
Q Consensus 475 ~~P~~~~~lv~~l~~~~p~~~i~~-H~H~t~Gla~an~l~Ai~aG~~---~vd~s~~glg~~~g~~~~e~~v~~l~~~g 549 (1080)
.+|++..++|+.+++.+ ++||.+ -|-| .-.-....-+|+++|++ +|.....+ ..+.++.....+|
T Consensus 105 vs~eee~~vV~~v~~~~-~vplsI~DT~~-~~~~~~V~eaal~aga~~k~iINdvs~~--------~~~~~~~~aa~~g 173 (310)
T 2h9a_B 105 RSGAELAEVCKAVADAI-DVPLMIIGCGV-EEKDAEIFPVIGEALSGRNCLLSSATKD--------NYKPIVATCMVHG 173 (310)
T ss_dssp CCHHHHHHHHHHHHHHC-SSCEEEECCSC-HHHHHHHHHHHHHHTTTSCCEEEEECTT--------THHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC-CceEEEECCCC-CCCCHHHHHHHHHhCCCCCCEEEECCCC--------ccHHHHHHHHHhC
Confidence 46777888999999988 899988 6521 22335667889999998 77655332 2455555555443
No 284
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=21.02 E-value=72 Score=41.47 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=28.2
Q ss_pred EEEecCCCeeecCCEEEEEEccCCceeEecCCCeEEe
Q psy3968 927 EIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963 (1080)
Q Consensus 927 ~~~v~~G~~V~~g~~~~~ieamKm~~~i~a~~~G~v~ 963 (1080)
.++|++||.|++||.|+.-.. -..+|-|..+|+|.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~wDp--~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANWDP--HTMPVITEVSGFVR 1036 (1407)
T ss_dssp EESSCSSCEECTTCEEEECCS--SCCCEECSSCEEEE
T ss_pred EEEEcCCCEecCCCEEEEEec--CceeEEeccceEEE
Confidence 357999999999999987754 46778888888775
No 285
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=20.85 E-value=2e+02 Score=30.92 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=70.7
Q ss_pred cCccChHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccCCCCCCC---CCC--cHHHHHHHHh
Q psy3968 472 AGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMT---SQP--SMGAVVASLQ 546 (1080)
Q Consensus 472 ~G~~~P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~glg~~~---g~~--~~e~~v~~l~ 546 (1080)
...+.|....+++.++|+..|++.|.+-+.-..+.....-++.++..-++.-.+++.+-... -|+ .++.++..++
T Consensus 61 ~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~~~~Pe~asl~~gs~Nf~~~v~~n~~~~~~~~~~~~~ 140 (282)
T 2y7e_A 61 RPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPLALKPEMATLNAGTLNFGDDIFINHPADIIRLAEAFK 140 (282)
T ss_dssp CEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGGGGCCSEEEEECCCEEETTEEECCCHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHhhcCCCEEEecccccccccccccCCHHHHHHHHHHHH
Confidence 35678999999999999988899999988655454667777777777788766665442221 132 4678888888
Q ss_pred cCCCCCC---CCHHHHHHHHHHHHH
Q psy3968 547 GSDIDTG---LDLKDISAYSAYWEQ 568 (1080)
Q Consensus 547 ~~g~~~~---~d~~~l~~~~~~~~~ 568 (1080)
..|+.+. +|...|..+..++++
T Consensus 141 e~Gv~pE~e~fd~g~l~~~~~l~~~ 165 (282)
T 2y7e_A 141 QYNVVPEVEVYESGMVDAVARLIKK 165 (282)
T ss_dssp HTTCEEEEEECSHHHHHHHHHHHHT
T ss_pred HcCCeEEEEEECHHHHHHHHHHHHc
Confidence 8887765 688888887766654
No 286
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=20.61 E-value=1.1e+02 Score=32.57 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHH--cCCChhhhccc------cCCccChHHHHHHHHhcCCeEEEEEEEecCCCCCCCCCCCHHHHHHH
Q psy3968 983 PDNVVYKFCDLSVQ--VGMDVFRVFDS------LNYLPNLILGMEAAGKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNL 1054 (1080)
Q Consensus 983 ~~~~~~~~~~~a~~--~gid~~~v~~~------ln~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1080)
+.+.|+.++ +||| .|.|+..+-=- |.|+.....+.+..++.|. -+|.|+. .|| .+
T Consensus 86 a~eAv~~a~-lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf---~Vlpy~~--dd~-----------~~ 148 (265)
T 1wv2_A 86 AVEAVRTCR-LARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGF---DVMVYTS--DDP-----------II 148 (265)
T ss_dssp HHHHHHHHH-HHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTC---EEEEEEC--SCH-----------HH
T ss_pred HHHHHHHHH-HHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCC---EEEEEeC--CCH-----------HH
Q ss_pred HHHHHHcCCcEE
Q psy3968 1055 ADELVKAGTHVL 1066 (1080)
Q Consensus 1055 ~~~~~~~g~~~~ 1066 (1080)
|+.|+++|++.+
T Consensus 149 akrl~~~G~~aV 160 (265)
T 1wv2_A 149 ARQLAEIGCIAV 160 (265)
T ss_dssp HHHHHHSCCSEE
T ss_pred HHHHHHhCCCEE
No 287
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=20.58 E-value=52 Score=36.08 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHcCCChhhhcc--------------ccCCccChHHHHHHHHhc----CCeEEEEEE-EecCCCC----C
Q psy3968 985 NVVYKFCDLSVQVGMDVFRVFD--------------SLNYLPNLILGMEAAGKA----GGVVEAAIS-YTGDVSD----P 1041 (1080)
Q Consensus 985 ~~~~~~~~~a~~~gid~~~v~~--------------~ln~~~n~~~~~~~~~~~----~~~~~~~~~-~~~~~~~----~ 1041 (1080)
+.+.+..+.+.++||.-.-+|= ++|+---+..|++++|+. ..++..|+| ||..--+ .
T Consensus 69 d~l~~~~~~~~~lGi~~v~LFgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvcLc~YT~HGHcGil~~ 148 (342)
T 1h7n_A 69 NRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYD 148 (342)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCT
T ss_pred HHHHHHHHHHHHCCCCEEEEecccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCceeEECC
Confidence 4455667788999998666652 567777889999999975 335555665 5532000 0
Q ss_pred CCCC---CCHHHHHHHHHHHHHcCCcEEEEec
Q psy3968 1042 SKKK---YDLKYYQNLADELVKAGTHVLCIKV 1070 (1080)
Q Consensus 1042 ~~~~---~~~~~~~~~~~~~~~~g~~~~~~kd 1070 (1080)
...+ -|++.+.+.|--..++|||+|+=-|
T Consensus 149 ~g~V~ND~Tl~~Lak~Als~A~AGAdiVAPSd 180 (342)
T 1h7n_A 149 DGTINRERSVSRLAAVAVNYAKAGAHCVAPSD 180 (342)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHTCSEEEECC
T ss_pred CCcCccHHHHHHHHHHHHHHHHcCCCeeeccc
Confidence 0011 3568888888889999999999666
No 288
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=20.46 E-value=2.8e+02 Score=29.86 Aligned_cols=136 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred ccCCCceeccccCCeeEEEEEecCChHHHHHHHHHHhhccEEcccccCHHHHHHhcccccccCCceeeeeecCCcccccc
Q psy3968 339 SAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTL 418 (1080)
Q Consensus 339 ~~~~G~~i~~~~ds~l~~Via~G~t~~eA~~~a~ral~~i~I~Gv~tni~~l~~il~~~~F~~g~~~T~fie~~~elf~~ 418 (1080)
....|+.+.++ ..++.+-....+.-.+.+-+...|+. .-|+.|......+.++. +.++++.
T Consensus 76 ~~~dG~~v~~g--~~v~~i~G~~~~ll~~Er~aLn~l~~--~SGIAT~t~~~v~~~~~---------~~i~~TR------ 136 (285)
T 1o4u_A 76 NVEDGEYLEGT--GVIGEIEGNTYKLLVAERTLLNVLSV--MFSVATTTRRFAEKLKH---------AKIAATR------ 136 (285)
T ss_dssp SCCTTCEEESC--EEEEEEEEEHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTCSS---------SEEECCS------
T ss_pred EcCCCCCcCCC--CEEEEEEEcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCC---------CEEeecC------
Q ss_pred CCcchHHHHHHHhhheeeecCCCCCCCCCCCCCCCCCCCCCCCCCCeeeeccccCccChHHHHH-----HHHHHHHHCCC
Q psy3968 419 QPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRAAKL-----LIGAIREKHPD 493 (1080)
Q Consensus 419 ~~~~dra~~L~~yla~V~Vng~~~p~~~~~~~~~~~~~~~~~~~G~~i~i~Dt~G~~~P~~~~~-----lv~~l~~~~p~ 493 (1080)
....-.+.+..|...+- ++.-. ++.|.|++-+-..+-... -++..|+..|.
T Consensus 137 -Kt~Pglr~~~kyAv~~G----Gg~nH-------------------R~gL~d~vlikdnHi~~~G~i~~av~~ar~~~~~ 192 (285)
T 1o4u_A 137 -KILPGLGVLQKIAVVHG----GGDPH-------------------RLDLSGCVMIKDNHLKMYGSAERAVQEVRKIIPF 192 (285)
T ss_dssp -CCCTTTHHHHHHHHHHH----TCC---------------------------CEEECHHHHHHHSSHHHHHHHHHTTSCT
T ss_pred -CCChhhHHHHHHHHHhC----CCCCc-------------------cCCCcccEEEchhHHhhcCCHHHHHHHHHHhCCC
Q ss_pred -CceEEeeCCCCchhHHHHHHHHHcCCCEE
Q psy3968 494 -IPIHIHTHDTSGAGVASMIACAEAGADVV 522 (1080)
Q Consensus 494 -~~i~~H~H~t~Gla~an~l~Ai~aG~~~v 522 (1080)
.+|++=+++ +.-..+|+++|+|+|
T Consensus 193 ~~~I~VEV~t-----leea~eA~~aGaD~I 217 (285)
T 1o4u_A 193 TTKIEVEVEN-----LEDALRAVEAGADIV 217 (285)
T ss_dssp TSCEEEEESS-----HHHHHHHHHTTCSEE
T ss_pred CceEEEEeCC-----HHHHHHHHHcCCCEE
No 289
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=20.44 E-value=87 Score=33.57 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=51.2
Q ss_pred eeeccccCccC--hHHHHHHHHHHHHHCCCCceEEeeCCCCchhHHHHHH-HHHcCCCEEeeccCCCCCCCCCCcHHHHH
Q psy3968 466 INTFDMAGLLK--PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIA-CAEAGADVVDVAVDSMSGMTSQPSMGAVV 542 (1080)
Q Consensus 466 i~i~Dt~G~~~--P~~~~~lv~~l~~~~p~~~i~~H~H~t~Gla~an~l~-Ai~aG~~~vd~s~~glg~~~g~~~~e~~v 542 (1080)
+++.++.|..+ |..+.++++.+|+.. ++|+.+ -.|.......+ ++.+|||.|=+.. .++
T Consensus 180 vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v----GfGIst~e~~~~~~~~gADgvIVGS-------------Aiv 241 (271)
T 3nav_A 180 LSRAGVTGAETKANMPVHALLERLQQFD-APPALL----GFGISEPAQVKQAIEAGAAGAISGS-------------AVV 241 (271)
T ss_dssp CCCC--------CCHHHHHHHHHHHHTT-CCCEEE----CSSCCSHHHHHHHHHTTCSEEEESH-------------HHH
T ss_pred EeccCCCCcccCCchhHHHHHHHHHHhc-CCCEEE----ECCCCCHHHHHHHHHcCCCEEEECH-------------HHH
Confidence 34556666653 678999999999887 889887 56776566666 9999999765432 355
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHHH
Q psy3968 543 ASLQGSDIDTGLDLKDISAYSAYWEQTR 570 (1080)
Q Consensus 543 ~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 570 (1080)
..++...-+ .-+.+..+.+|+++++
T Consensus 242 ~~i~~~~~~---~~~~~~~~~~~~~~l~ 266 (271)
T 3nav_A 242 KIIETHLDN---PAKQLTELANFTQAMK 266 (271)
T ss_dssp HHHHHTTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHhhccc---hHHHHHHHHHHHHHHH
Confidence 555532100 1235566777777665
No 290
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=20.40 E-value=56 Score=35.54 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
+.-++|++++|+.|++||+|+.++.
T Consensus 83 ~~~v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 83 HVKYEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp TEEEEECCCTTCEECSSCEEEEEEE
T ss_pred CeEEEEEeCCCCEeeCCCEEEEEEE
Confidence 4557899999999999999999874
No 291
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=20.31 E-value=75 Score=32.33 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHHHHHC-CCCceEEeeCCCCchhHHHHHHHHHcCCCEEeeccC
Q psy3968 483 LIGAIREKH-PDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527 (1080)
Q Consensus 483 lv~~l~~~~-p~~~i~~H~H~t~Gla~an~l~Ai~aG~~~vd~s~~ 527 (1080)
.++.||+.+ ..+++.+|.||-........-++.++|||+|-+...
T Consensus 42 ~i~~lr~~~~~~v~~D~kl~DI~~t~~~~v~~~~~~Gad~vtvh~~ 87 (208)
T 2czd_A 42 IIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTF 87 (208)
T ss_dssp HHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred HHHHHHHcCCCEEEEEeeeCchHHHHHHHHHHHHhcCCCEEEEecc
Confidence 566778772 268899999965544444445777999998866553
No 292
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=20.16 E-value=50 Score=36.33 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCeeecCCEEEEEEc
Q psy3968 923 GSVMEIRVKVGDKVEKGAALVVLSA 947 (1080)
Q Consensus 923 G~v~~~~v~~G~~V~~g~~~~~iea 947 (1080)
+.-++|++++|+.|++|++|+.++.
T Consensus 107 ~~~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 107 QVSIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp CCEEEESSCTTCEECTTCEEEEEEE
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEe
Confidence 5567899999999999999999885
Done!