RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3968
(1080 letters)
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 785 bits (2030), Expect = 0.0
Identities = 240/419 (57%), Positives = 307/419 (73%), Gaps = 4/419 (0%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
HR KADE+YLVG+G P+EAYL+I II +AK +DVDAIHPGYGFLSE FA+ +
Sbjct: 44 YHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREE 103
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
GI FIGP+ + GDKV AR AA+++G+P++PG+ GP+ E+ + F +G P+I K
Sbjct: 104 GIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIK 163
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
AA GGGGRGMR+VR +V+E F+RA SEAKAAFG+ +++EK IE P+HIEVQ+LGD
Sbjct: 164 AALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYE 223
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHLYERDCSVQRRHQKVVE+AP+ L +R ++ + AV+L + VGY NAGTVEFL
Sbjct: 224 GNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLV 283
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGL---TQEKISPQG 299
+FYFIEVN R+QVEHT+TE ITG+D+VQSQI +A+G +L + QE I G
Sbjct: 284 SG-DEFYFIEVNPRIQVEHTITEMITGIDIVQSQILIADGCSLHSHEVGIPKQEDIRING 342
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQ RVTTEDP NF PDTG+I +RSG G G+RLD + F GA+I+PYYDSLLVK+
Sbjct: 343 YAIQSRVTTEDPLNNFMPDTGKIMAYRSGGGFGVRLDAGNGFQGAVITPYYDSLLVKLST 402
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTL 418
A + + KM R LREFR+RG+KTNIPFL NV+ + KF++G DT FID P+LF
Sbjct: 403 WALTFEQAARKMLRNLREFRIRGIKTNIPFLENVVQHPKFLSGEYDTSFIDTTPELFVF 461
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 809 bits (2092), Expect = 0.0
Identities = 247/505 (48%), Positives = 337/505 (66%), Gaps = 10/505 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+HR KADESYLVG L P E+YLNI II VAK+ +VDAIHPGYGFLSE FA+ +
Sbjct: 42 LHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEE 101
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
GI+FIGP + GDKV AR AI + +P++PGT GPI + E A EF + G P++ K
Sbjct: 102 GIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK 161
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A GGGG+GMR+VR+ ++E+ F RA SEA+ +FGN ++IE++I+ P+HIEVQ++GD+
Sbjct: 162 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEH 221
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN+VHL+ERDCSVQRRHQKVVE+AP+ L +R ++ D A++L +++ Y NAGTVEFL
Sbjct: 222 GNIVHLFERDCSVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV 281
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGL---TQEKISPQG 299
+F+FIEVN R+QVEHT+TE +TG+D+V++QI VA G L + Q+ I+ G
Sbjct: 282 SG-DEFFFIEVNPRVQVEHTITEMVTGIDIVKTQILVAAGADLFGEEINMPQQKDITTLG 340
Query: 300 FAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIA 359
+AIQCR+TTEDP +F PDTG I +RS G G+RLD F GA ISPYYDSLLVK+
Sbjct: 341 YAIQCRITTEDPLNDFMPDTGTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLST 400
Query: 360 HAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQ 419
HA + + KM R+LRE R+RGVKTNIPFL+NV+ N+KF +G T FI+E P+LF +Q
Sbjct: 401 HAISFKQAEEKMVRSLREMRIRGVKTNIPFLINVMKNKKFTSGDYTTKFIEETPELFDIQ 460
Query: 420 PTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRA 479
P+ +R K L Y+G V +NG + P +P + K+ + LL
Sbjct: 461 PSLDRGTKTLEYIGNVTINGFPN-VEKRPKPDYELASIPTVSSSKIASFSGTKQLLDEVG 519
Query: 480 AKLLIGAIREKHPDIPIHIHTHDTS 504
K + ++++ + DT+
Sbjct: 520 PKGVAEWVKKQD-----DVLLTDTT 539
Score = 524 bits (1353), Expect = e-168
Identities = 143/313 (45%), Positives = 196/313 (62%), Gaps = 4/313 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529
DMAGLLKP+AA LIG ++ D+PIH+HTHDTSG G+ + +AG D++D AV SM
Sbjct: 713 DMAGLLKPKAAYELIGELKSA-VDLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASM 771
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG+TSQPS ++ +L G D++ + + S YW R Y+ FE +KS N ++
Sbjct: 772 SGLTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFESD--IKSPNTEI 829
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y +E+PGGQY+NL QA SLGLGE F++VK YR N L GDI+KV PSSKVVGD A +M
Sbjct: 830 YQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYM 889
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L + V+ +L FP+SVV F +G IG P GF + L++ +LK + RPG
Sbjct: 890 VQNDLDEQSVITDGYKLDFPESVVSFFKGEIGQPVNGFNKDLQAVILKGQEALTARPGEY 949
Query: 710 LPPFDFGKLKTELQERH-PEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L P DF K++ L+E T++D++S LYP+V E Y+ R +G + LDT F G
Sbjct: 950 LEPVDFEKVRELLEEEQQGPVTEQDIISYVLYPKVYEQYIQTRNQYGNLSLLDTPTFFFG 1009
Query: 769 PKVGEEFEVKIQP 781
+ GE E++I
Sbjct: 1010 MRNGETVEIEIDK 1022
Score = 230 bits (588), Expect = 4e-62
Identities = 85/199 (42%), Positives = 109/199 (54%), Gaps = 13/199 (6%)
Query: 711 PPFDFGKLKTELQERHPE------ATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRI 764
F G T+ E PE + DR + VT + P + +
Sbjct: 438 KKFTSGDYTTKFIEETPELFDIQPSLDRGTKTLEYIGNVTINGF-------PNVEKRPKP 490
Query: 765 FLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLAT 824
+ KI G +Q+L GP+ A+ V++ +LL DTTFRDAHQSLLAT
Sbjct: 491 DYELASIPTVSSSKIASFSGTKQLLDEVGPKGVAEWVKKQDDVLLTDTTFRDAHQSLLAT 550
Query: 825 RVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQ 884
RVR+ D++ I+ A F + +SLE WGGATFDVA FL E PWERLE +RK IPN+ FQ
Sbjct: 551 RVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLFQ 610
Query: 885 MLLRGANAVGYTNYPDNEM 903
MLLR +NAVGY NYPDN +
Sbjct: 611 MLLRASNAVGYKNYPDNVI 629
Score = 179 bits (455), Expect = 8e-46
Identities = 52/102 (50%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVV 1028
MLLR +NAVGY NYPDNV++KF S + G+DVFR+FDSLN++ + + EA +AG +
Sbjct: 611 MLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKIS 670
Query: 1029 EAAISYTGDVSDPSK-KKYDLKYYQNLADELVKAGTHVLCIK 1069
E I YTGD+ +P + Y L+YY LA EL + G H+L IK
Sbjct: 671 EGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK 712
Score = 108 bits (272), Expect = 5e-24
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 902 EMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGV 961
++ PKA KS P +GA MPGSV E++V VG+ V+ L++ AMKME +QAP GV
Sbjct: 1065 NANVKPKADKSNPSHIGAQMPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGV 1124
Query: 962 VKSI 965
+K +
Sbjct: 1125 IKQV 1128
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 801 bits (2070), Expect = 0.0
Identities = 236/472 (50%), Positives = 305/472 (64%), Gaps = 10/472 (2%)
Query: 3 MHRQKADESYLVGKG------LPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFA 56
+HR KADESY VG+G L P+E+YL+I E+IRVAK + DAIHPGYG LSE +F
Sbjct: 52 LHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFV 111
Query: 57 QAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYG 116
A AGI FIGP ++Q+G+KVAAR AI GVP+VP T E + G
Sbjct: 112 DACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIG 171
Query: 117 LPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQ 176
PV+ KA++GGGGRGMRV+R D+ + A EA AAFG +++EK +ER RH+E Q
Sbjct: 172 YPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQ 231
Query: 177 LLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAG 236
+LGD GNVVHL+ERDCSVQRR+QKVVE APAP+L R ++ ++K+A Y AG
Sbjct: 232 ILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGATNYIGAG 291
Query: 237 TVEFLCD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGL---TQ 292
TVE+L D ++G+FYFIEVN R+QVEHTVTE +TG+D+V++QI + +G + Q
Sbjct: 292 TVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILDGAAIGTPQSGVPNQ 351
Query: 293 EKISPQGFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDS 352
E I G A+QCRVTTEDP NF PD GRI +RS G GIRLDG ++++GAII+ YYD
Sbjct: 352 EDIRLNGHALQCRVTTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYSGAIITRYYDP 411
Query: 353 LLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412
LLVKV A A + + ++M+RALREFR+RGV TN+ FL ++ + KF + + T FID
Sbjct: 412 LLVKVTAWAPNPLEAISRMDRALREFRIRGVATNLTFLEAIIGHPKFRDNSYTTRFIDTT 471
Query: 413 PQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGK 464
P+LF ++RA KLL YL V VNG P PV G
Sbjct: 472 PELFQQVKRQDRATKLLTYLADVTVNGHPEAKDRPKPLENAARPVVPYANGN 523
Score = 522 bits (1346), Expect = e-167
Identities = 143/313 (45%), Positives = 194/313 (61%), Gaps = 4/313 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529
DMAGLLKP AAK+L A+RE +PIH HTHDTSG A+++A EAG D VD A+D++
Sbjct: 730 DMAGLLKPAAAKVLFKALREA-TGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDAL 788
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG TSQP +G++V +L GS+ D GLD I S YWE R YA FE +K ++V
Sbjct: 789 SGNTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESD--LKGPASEV 846
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
YL+E+PGGQ+TNL+ QA SLGL + V +AY +AN + GDI+KVTPSSKVVGD A M
Sbjct: 847 YLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSSKVVGDMALMM 906
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
V LT +V++ E+SFP+SVV L+G +G P G+PE L+ K LK RPG+
Sbjct: 907 VSQDLTVADVVSPDREVSFPESVVSMLKGDLGQPPSGWPEALQKKALKGEKPYTVRPGSL 966
Query: 710 LPPFDFGKLKTELQERH-PEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
L D + ++++ E +D + S +YP+V D+ +++GPV L T + G
Sbjct: 967 LKEADLDAERKVIEKKLEREVSDFEFASYLMYPKVFTDFALASDTYGPVSVLPTPAYFYG 1026
Query: 769 PKVGEEFEVKIQP 781
GEE I+
Sbjct: 1027 LADGEELFADIEK 1039
Score = 230 bits (588), Expect = 4e-62
Identities = 81/199 (40%), Positives = 105/199 (52%), Gaps = 13/199 (6%)
Query: 711 PPFDFGKLKTELQERHPE------ATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRI 764
P F T + PE DR VT + D+
Sbjct: 456 PKFRDNSYTTRFIDTTPELFQQVKRQDRATKLLTYLADVTVNG-----HPEAKDRPKPLE 510
Query: 765 FLTGPKVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLAT 824
P V + G +Q+L + GP+ F + +R K +LL DTT RD HQSLLAT
Sbjct: 511 NAARPVV--PYANGNGVKDGTKQLLDTLGPKKFGEWMRNEKRVLLTDTTMRDGHQSLLAT 568
Query: 825 RVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQ 884
R+R++D+ +I+ +H NL SLE WGGATFDV++RFL E PWERL +R+ PN+ Q
Sbjct: 569 RMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQ 628
Query: 885 MLLRGANAVGYTNYPDNEM 903
MLLRGAN VGYTNYPDN +
Sbjct: 629 MLLRGANGVGYTNYPDNVV 647
Score = 185 bits (471), Expect = 8e-48
Identities = 56/101 (55%), Positives = 74/101 (73%)
Query: 969 MLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVV 1028
MLLRGAN VGYTNYPDNVV F + + G+D+FRVFD LN++ N+ + M+A + +
Sbjct: 629 MLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLC 688
Query: 1029 EAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIK 1069
EAAI YTGD+ + ++ KYDLKYY NLA EL KAG H++ +K
Sbjct: 689 EAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVK 729
Score = 108 bits (271), Expect = 6e-24
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 902 EMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGV 961
+ KA VGAPMPG + + V G V G LV + AMKME + A G
Sbjct: 1083 GAAVRRKAEPGNAAHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGT 1142
Query: 962 VKSI 965
+ +
Sbjct: 1143 IAEV 1146
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A
{Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Length = 451
Score = 666 bits (1721), Expect = 0.0
Identities = 191/414 (46%), Positives = 275/414 (66%), Gaps = 6/414 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
H + ADE+Y++G P++ YLN II +A E DAIHPGYGFL+E ++FA+ +A
Sbjct: 40 RHVKLADEAYMIGT--DPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEA 97
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
GI FIGP V++ MGDK +++ +GVP+VPG+ G + + EEA + G PV+ K
Sbjct: 98 GITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLK 157
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A GGGGRG+R+ R E++ +N+++AS EA+ AFG G + +EKFIE P+HIE Q+LGDK
Sbjct: 158 ATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKH 217
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GNV+HL ERDCS+QRR+QK+VEIAP+ L R ++ K AK +GY NAGT+EF+
Sbjct: 218 GNVIHLGERDCSIQRRNQKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIA 277
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
D+ G YFIE+N R+QVEH V+E +TG+D+V+ QI++A G L + QE + G+AI
Sbjct: 278 DQEGNLYFIEMNTRIQVEHPVSEMVTGIDIVKWQIKIAAGEPLT---IKQEDVKFNGYAI 334
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+ EDP KNF P T IE + G GIR++ A A G ++PYYDS++ K+I A
Sbjct: 335 ECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEHA-AARGFEVTPYYDSMIAKLITWAP 393
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLF 416
+ +M AL + + GVKT IP L+N++ + F G T +++E+P++F
Sbjct: 394 TWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVF 447
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin
carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus
aureus}
Length = 451
Score = 642 bits (1658), Expect = 0.0
Identities = 189/414 (45%), Positives = 265/414 (64%), Gaps = 6/414 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+H Q ADE+Y VG ++YLNIP I+ +A D +HPGYGFL+E +DFA+
Sbjct: 39 LHTQIADEAYCVGPT-LSKDSYLNIPNILSIATSTGCDGVHPGYGFLAENADFAELCEAC 97
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
++FIGPS +Q+MG K A+ I + VP+VPG+ G + EA + K G PVI K
Sbjct: 98 QLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIK 157
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A GGGG+G+RV R +++E F+ EA+ AFGNG +++EKFIE RHIE+Q++GD
Sbjct: 158 ATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSY 217
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GNV+HL ERDC++QRR QK+VE AP+P LD R +M + AV+ AK V Y NAGT+EF+
Sbjct: 218 GNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIY 277
Query: 243 DES-GQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFA 301
D + +FYF+E+N R+QVEH VTE +TG+DLV+ Q++VA G LP QE I G A
Sbjct: 278 DLNDNKFYFMEMNTRIQVEHPVTEMVTGIDLVKLQLQVAMGDVLP---YKQEDIKLTGHA 334
Query: 302 IQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHA 361
I+ R+ E+P KNF P G+IE + + G G+R++ A + I PYYDS++ K+I H
Sbjct: 335 IEFRINAENPYKNFMPSPGKIEQYLAPGGYGVRIESA-CYTNYTIPPYYDSMVAKLIIHE 393
Query: 362 ADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQL 415
+ RAL EF V G+ T IPF + +L N F +G +T F+++N +
Sbjct: 394 PTRDEAIMAGIRALSEFVVLGIDTTIPFHIKLLNNDIFRSGKFNTNFLEQNSIM 447
>3ouz_A Biotin carboxylase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta fold,
cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter
jejuni subsp} PDB: 3ouu_A*
Length = 446
Score = 635 bits (1640), Expect = 0.0
Identities = 182/410 (44%), Positives = 259/410 (63%), Gaps = 7/410 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
++ + AD S +GK E+YLNIP II A+ + DAI PGYGFLSE +F +
Sbjct: 44 LYLKYADASICIGKA-RSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKH 102
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
I+FIGPS + M DK A+Q +GVP++PG+ G + E A + + G PVI K
Sbjct: 103 NIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILK 162
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
AA GGGGRGMRVV +D+E+ + A SEA AFG+G M++EK+I+ PRHIEVQ++GD
Sbjct: 163 AAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSF 222
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GNV+H+ ERDCS+QRRHQK++E +PA LD R ++ + A+K AK +GY AGT EFL
Sbjct: 223 GNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLV 282
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
D++ FYFIE+N RLQVEH V+E ++G+D+++ I+VAEG LP +QE I G +I
Sbjct: 283 DKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALP----SQESIKLNGHSI 338
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAA 362
+CR+T ED K F P G+I + G +R++ + + YYDS++ K++ A
Sbjct: 339 ECRITAEDS-KTFLPSPGKITKYIPPAGRNVRMESH-CYQDYSVPAYYDSMIGKLVVWAE 396
Query: 363 DLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412
D + AKM AL E + G+KT F L+++ N F+N DT ++ +
Sbjct: 397 DRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH 446
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis,
nucleotide-BIN lipid synthesis, ATP-grAsp domain,
fragment screening; HET: L22; 1.77A {Escherichia coli}
PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A*
2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A*
2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A*
...
Length = 449
Score = 621 bits (1603), Expect = 0.0
Identities = 177/411 (43%), Positives = 261/411 (63%), Gaps = 8/411 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V +
Sbjct: 40 KHVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERS 98
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTT-EEAMEFCLKYGLPVIF 121
G FIGP ++ MGDKV+A A +GVP VPG+ GP+ ++ + G PVI
Sbjct: 99 GFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVII 158
Query: 122 KAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDK 181
KA+ GGGGRGMRVVR ++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D
Sbjct: 159 KASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG 218
Query: 182 AGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241
GN ++L ERDCS+QRRHQKVVE APAP + +R + + K +GY AGT EFL
Sbjct: 219 QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFL 278
Query: 242 CDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFA 301
+ G+FYFIE+N R+QVEH VTE ITGVDL++ Q+R+A G L + QE++ +G A
Sbjct: 279 FEN-GEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLS---IKQEEVHVRGHA 334
Query: 302 IQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHA 361
++CR+ EDP F P G+I F + G G+R + +AG + PYYDS++ K+I +
Sbjct: 335 VECRINAEDP-NTFLPSPGKITRFHAPGGFGVRWESH-IYAGYTVPPYYDSMIGKLICYG 392
Query: 362 ADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN 412
+ + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++
Sbjct: 393 ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKK 443
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 616 bits (1591), Expect = 0.0
Identities = 138/463 (29%), Positives = 222/463 (47%), Gaps = 60/463 (12%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+ + AD+ V G Y N+ I+ +A+ DVDA+ G+G SE + + +
Sbjct: 96 EYIRMADQYIEVPGG-TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQS 154
Query: 63 G--IRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTP--------------------- 99
+ FIGP ++ +GDK+++ A + VP +P +
Sbjct: 155 KRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDI 214
Query: 100 ---GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAF 156
G T+ E+ ++ + G PV+ KA+ GGGG+G+R V + ED + +A
Sbjct: 215 YQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYH----QAANEI 270
Query: 157 GNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVR 216
+FI K R RH+EVQLL D+ G + L+ RDCSVQRRHQK++E AP
Sbjct: 271 PGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 330
Query: 217 NKMTDLAVKLAKHVGYSNAGTVEFLCD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQS 275
++M AV+L K VGY +AGTVE+L + G+FYF+E+N RLQVEH TE ++GV+L +
Sbjct: 331 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAA 390
Query: 276 QIRVAEGMTLP--------------------------ELGLTQEKISPQGFAIQCRVTTE 309
Q+++A G+ + + Q + P+G CR+T+E
Sbjct: 391 QLQIAMGIPMHRISDIRTLYGMNPHSASEIDFEFKTQDATKKQRRPIPKGHCTACRITSE 450
Query: 310 DPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCA 369
DP F+P G + + S I + DS + A + Q+S
Sbjct: 451 DPNDGFKPSGGTLHELNFRSSSNVWGYF-SVGNNGNIHSFSDSQFGHIFAFGENRQASRK 509
Query: 370 KMNRALREFRVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
M AL+E +RG +T + +L+ +L + F + + T ++D+
Sbjct: 510 HMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDD 552
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 581 bits (1499), Expect = 0.0
Identities = 180/448 (40%), Positives = 260/448 (58%), Gaps = 26/448 (5%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+H Q ADE+ +G P ++Y+ I +++ + A+HPGYGFLSE S FA+A+
Sbjct: 40 LHVQMADEAVHIG-PPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAE 98
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
G+ F+GP ++ MGDK+ +++ A ++ V VPG G I +EA++ + G PV+ K
Sbjct: 99 GVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIK 158
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
A+ GGGG+GMR+ ++ E FQ + +EA +FG+ +FIEKF+ +PRHIE+Q+L D
Sbjct: 159 ASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSH 218
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
GN ++L ER+CS+QRR+QKVVE AP+P LD R M + AV LAK VGY++AGTVEF+
Sbjct: 219 GNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIV 278
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
D FYF+E+N RLQVEH VTE ITGVDLV+ IRVA G L +TQ + G+AI
Sbjct: 279 DGQKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGEPLS---ITQGDVKLTGWAI 335
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFR--------------------SGEGMGIRLDGASAFA 342
+ R+ EDP + F P GR+ +R +R D +
Sbjct: 336 ENRLYAEDPYRGFLPSIGRLTRYRPPAETAAGPLLVNGKWQGDAPSGEAAVRNDTG-VYE 394
Query: 343 GAIISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNG 402
G IS YYD ++ K+ A ++ M AL F V G+ N+PFL V+ + KF++G
Sbjct: 395 GGEISMYYDPMIAKLCTWAPTRAAAIEAMRIALDSFEVEGIGHNLPFLSAVMDHPKFISG 454
Query: 403 AVDTYFIDEN-PQLFTLQPTKNRAQKLL 429
+ T FI E P+ F + +
Sbjct: 455 DMTTAFIAEEYPEGFEGVNLPETDLRRV 482
Score = 87.7 bits (218), Expect = 8e-18
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 904 HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
+ K + PMPG ++++ V+VG +V++G AL + AMKME +++A +GVV
Sbjct: 602 LMPEKLPPDTSKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVA 661
Query: 964 SIDAS 968
I+AS
Sbjct: 662 KINAS 666
Score = 34.6 bits (80), Expect = 0.18
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 919 APMPGSVMEIRVKVGDKVEKGAALVVL 945
A G V +I G+ + ++
Sbjct: 654 AEKKGVVAKINASAGNSLAVDDVIMEF 680
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 578 bits (1491), Expect = 0.0
Identities = 188/450 (41%), Positives = 260/450 (57%), Gaps = 7/450 (1%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
H +AD + +G G P ++YL II A + AIHPGYGFLSE +DFA+A +A
Sbjct: 66 RHVAEADIAVDLG-GAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENADFARACEEA 124
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
G+ F+GP + MG K AA+ ++GVP+VPG G E + G PV+ K
Sbjct: 125 GLLFLGPPAAAIDAMGSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLK 184
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
AA GGGG+GM+VV + ++ E A EAKAAFG+ M +EK++ +PRH+E+Q+ D+
Sbjct: 185 AAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRH 244
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
G+ ++L ERDCS+QRRHQKVVE APAP L +R M + AV+ A+ +GY AGTVEFL
Sbjct: 245 GHCLYLNERDCSIQRRHQKVVEEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLL 304
Query: 243 DESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAI 302
DE GQF+F+E+N RLQVEH VTE ITG+DLV QIRVA G LP LTQE++ G AI
Sbjct: 305 DERGQFFFMEMNTRLQVEHPVTEAITGLDLVAWQIRVARGEALP---LTQEQVPLNGHAI 361
Query: 303 QCRVTTEDPAKNFQPDTGRIEVFRS-GEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHA 361
+ R+ EDP +F P +GR+ ++R G G R+D + G +SP+YD +L K+IA
Sbjct: 362 EVRLYAEDPEGDFLPASGRLMLYREAAAGPGRRVD-SGVREGDEVSPFYDPMLAKLIAWG 420
Query: 362 ADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDEN-PQLFTLQP 420
+ + ++ L E V G++TN+ FL +L + F +DT FI + L
Sbjct: 421 ETREEARQRLLAMLAETSVGGLRTNLAFLRRILGHPAFAAAELDTGFIARHQDDLLPAPQ 480
Query: 421 TKNRAQKLLNYLGTVLVNGPSTPLATPLLP 450
+ P P
Sbjct: 481 ALPEHFWQAAAEAWLQSEPGHRRDDDPHSP 510
Score = 89.3 bits (222), Expect = 3e-18
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 906 HPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
+AA + G + APM GS++ + V+ G VE GA LVVL AMKME ++AP GVVK++
Sbjct: 594 EAEAAHAHQGGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKAL 653
Query: 966 DAS 968
S
Sbjct: 654 YCS 656
Score = 36.9 bits (86), Expect = 0.043
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 919 APMPGSVMEIRVKVGDKVEKGAALVVLSA 947
AP G V + G+ VE+G LV L
Sbjct: 644 APHAGVVKALYCSEGELVEEGTPLVELDE 672
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 568 bits (1467), Expect = 0.0
Identities = 134/456 (29%), Positives = 217/456 (47%), Gaps = 53/456 (11%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+ + AD V G P Y N+ I+ +AK V A+ G+G SE + +
Sbjct: 89 EYIKMADHYVPVPGG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKN 147
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTP----------------------- 99
G+ F+GP + +GDK+A+ A VP +P +
Sbjct: 148 GVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPED 207
Query: 100 ----GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAA 155
G + +E +E + G P++ KA+ GGGG+G+R ED F+ + ++
Sbjct: 208 VYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFR----QVQSE 263
Query: 156 FGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINV 215
+F+ K + RH+EVQ+L D+ GN V L+ RDCS+QRRHQK+VE APA + +
Sbjct: 264 IPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAI 323
Query: 216 RNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQS 275
M A++LAK VGY +AGTVE+L + G F+F+E+N RLQVEH TE I V+L +
Sbjct: 324 FEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAA 383
Query: 276 QIRVAEGMTLP-------------------ELGLTQEKISPQGFAIQCRVTTEDPAKNFQ 316
Q+++A G+ L +G I R+T+E+P + F+
Sbjct: 384 QLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFK 443
Query: 317 PDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALR 376
P +G ++ + S A + + DS + + + + + M AL+
Sbjct: 444 PSSGTVQELNFRSSKNVWGY-FSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALK 502
Query: 377 EFRVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
E +RG +T + +L+N+L + F N +DT ++D
Sbjct: 503 ELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDY 538
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 567 bits (1464), Expect = 0.0
Identities = 134/456 (29%), Positives = 217/456 (47%), Gaps = 53/456 (11%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
+ + AD V G P Y N+ I+ +AK V A+ G+G SE + +
Sbjct: 105 EYIKMADHYVPVPGG-PNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKN 163
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTP----------------------- 99
G+ F+GP + +GDK+A+ A VP +P +
Sbjct: 164 GVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPED 223
Query: 100 ----GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAA 155
G + +E +E + G P++ KA+ GGGG+G+R ED F+ + ++
Sbjct: 224 VYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFR----QVQSE 279
Query: 156 FGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINV 215
+F+ K + RH+EVQ+L D+ GN V L+ RDCS+QRRHQK+VE APA + +
Sbjct: 280 IPGSPIFLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPLAI 339
Query: 216 RNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQS 275
M A++LAK VGY +AGTVE+L + G F+F+E+N RLQVEH TE I V+L +
Sbjct: 340 FEFMEQCAIRLAKTVGYVSAGTVEYLYSQDGSFHFLELNPRLQVEHPCTEMIADVNLPAA 399
Query: 276 QIRVAEGMTLP-------------------ELGLTQEKISPQGFAIQCRVTTEDPAKNFQ 316
Q+++A G+ L +G I R+T+E+P + F+
Sbjct: 400 QLQIAMGVPLHRLKDIRLLYGESPWGVTPISFETPSNPPLARGHVIAARITSENPDEGFK 459
Query: 317 PDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALR 376
P +G ++ + S A + + DS + + + + + M AL+
Sbjct: 460 PSSGTVQELNFRSSKNVWGY-FSVAATGGLHEFADSQFGHCFSWGENREEAISNMVVALK 518
Query: 377 EFRVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
E +RG +T + +L+N+L + F N +DT ++D
Sbjct: 519 ELSIRGDFRTTVEYLINLLETESFQNNDIDTGWLDY 554
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 577 bits (1489), Expect = 0.0
Identities = 158/410 (38%), Positives = 234/410 (57%), Gaps = 9/410 (2%)
Query: 3 MHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA 62
H AD S + G E YL+I +II AK+ AI PGYGFLSE +DF+
Sbjct: 69 QHVTDADFSVALH-GRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQE 127
Query: 63 GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFK 122
I F+GPS ++++G K +AR+ A + VP+VPG+ G I +EA E K PV+ K
Sbjct: 128 NIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVK 186
Query: 123 AAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA 182
+ GGGG G++ V +D+E F+ + K+ FG+ +F+E+F+ RH+E+Q++GD
Sbjct: 187 STAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGF 246
Query: 183 GNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLC 242
G + + ERDCS+QRR+QKV+E PAP+L R KM + +L + Y AGTVEF+
Sbjct: 247 GKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIY 306
Query: 243 D-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFA 301
D + +FYF+EVNARLQVEH +TE +TG+DLV+ +R+A + KI G +
Sbjct: 307 DEQRDEFYFLEVNARLQVEHPITEMVTGLDLVEWMLRIAANDSPD---FDNTKIEVSGAS 363
Query: 302 IQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHA 361
I+ R+ E+P K+F+P G++ R+D G +S YD L K+I H
Sbjct: 364 IEARLYAENPVKDFRPSPGQLTSVSFPS--WARVDTW-VKKGTNVSAEYDPTLAKIIVHG 420
Query: 362 ADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
D + K+N+AL E V G TNI +L ++ +++ F V T +D
Sbjct: 421 KDRNDAIMKLNQALNETAVYGCITNIDYLRSIASSKMFKEAKVATKVLDS 470
Score = 75.8 bits (187), Expect = 6e-14
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
Query: 854 ATFDVA--LRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAK 911
+ FD L +++E + Q + A ++ +
Sbjct: 1105 SIFDHKEYLAWINENIDSIVAFQEAQGGEKADEFARLIQVANAELKKSGDDKPQDVEEYP 1164
Query: 912 SVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
+ + G + VGD VE G ++++ AMK EMVV A G V I
Sbjct: 1165 DDAELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHK 1221
Score = 36.9 bits (86), Expect = 0.045
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
VGA G V +I K GD VE G + V+
Sbjct: 1207 VGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 500 bits (1290), Expect = e-164
Identities = 207/313 (66%), Positives = 254/313 (81%), Gaps = 1/313 (0%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529
DMAGLLKP A +L+ ++R++ PD+P+HIHTHDTSGAGVA+M+ACA+AGADVVDVA DSM
Sbjct: 282 DMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSM 341
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SGMTSQPSMGA+VA +G+ +DT + ++ + YS YWE R LYA F+CT TMKSGN+DV
Sbjct: 342 SGMTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDV 401
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
Y NEIPGGQYTNL FQA+S+GLG F++VKKAY EAN +LGD+IKVTPSSK+VGD AQFM
Sbjct: 402 YENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPSSKIVGDLAQFM 461
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
VQN L+ E A+AEELSFP+SVVEFLQG IG P+ GFPEP RSKVLKD+PR+EGRPGAS
Sbjct: 462 VQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHGGFPEPFRSKVLKDLPRVEGRPGAS 521
Query: 710 LPPFDFGKLKTELQERH-PEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTG 768
LPP D L+ EL +RH E T DV+SAA+YP V + F +FGP+D L+TR+FL G
Sbjct: 522 LPPLDLQALEKELVDRHGEEVTPEDVLSAAMYPDVFAHFKDFTATFGPLDSLNTRLFLQG 581
Query: 769 PKVGEEFEVKIQP 781
PK+ EEFEV+++
Sbjct: 582 PKIAEEFEVELER 594
Score = 246 bits (629), Expect = 2e-69
Identities = 94/122 (77%), Positives = 108/122 (88%)
Query: 780 QPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVA 839
PP GFR IL +GPE FA+AVR + LLLMDTTFRDAHQSLLATRVR+HDL KI+P+VA
Sbjct: 76 PPPAGFRDILLREGPEGFARAVRNHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVA 135
Query: 840 HKFNNLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYP 899
H F+ L+S+ENWGGATFDVA+RFL+ECPW RL+E+R+ IPNIPFQMLLRGANAVGYTNYP
Sbjct: 136 HNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYP 195
Query: 900 DN 901
DN
Sbjct: 196 DN 197
Score = 184 bits (470), Expect = 1e-48
Identities = 82/108 (75%), Positives = 97/108 (89%)
Query: 962 VKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAA 1021
+ +I MLLRGANAVGYTNYPDNVV+KFC+++ + GMDVFRVFDSLNYLPN++LGMEAA
Sbjct: 174 IPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNYLPNMLLGMEAA 233
Query: 1022 GKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIK 1069
G AGGVVEAAISYTGDV+DPS+ KY L+YY LA+ELV+AGTH+LCIK
Sbjct: 234 GSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIK 281
Score = 99.7 bits (249), Expect = 2e-21
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 902 EMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGV 961
EMH HPKA K V GQ+GAPMPG V++I+V G KV KG L VLSAMKME VV +P++G
Sbjct: 637 EMHFHPKALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGT 696
Query: 962 VKSI 965
V+ +
Sbjct: 697 VRKV 700
Score = 86.2 bits (214), Expect = 2e-17
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 392 NVLTNQKFVNGAVD-TYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLP 450
+ + +G V +DENP+LF L+P +NRAQKLL+YLG V+VNGP+TP+ P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMDENPELFQLRPAQNRAQKLLHYLGHVMVNGPTTPIPVKASP 62
Query: 451 AEVTPPVPEIPLGK 464
+ P VP +P+G
Sbjct: 63 SPTDPVVPAVPIGP 76
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
transfera; HET: KCX; 1.90A {Propionibacterium
freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Length = 539
Score = 415 bits (1070), Expect = e-134
Identities = 85/317 (26%), Positives = 130/317 (41%), Gaps = 19/317 (5%)
Query: 470 DMAGLLKPRAAKLLIGAIREK-HPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528
DMA LLKP+ A +I AI++ I++H H T+G S++ EAG DVVD A+ S
Sbjct: 196 DMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS 255
Query: 529 MSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNAD 588
MS +V L+G+ T LD + +++ R Y FE + +
Sbjct: 256 MSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFE---SKTLVDTS 312
Query: 589 VYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQF 648
++ ++IPGG +N++ Q + G + ++V G VTPSS++VG A F
Sbjct: 313 IFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVF 372
Query: 649 MVQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLK--DMPRIEGRP 706
V E + + G G + + I RP
Sbjct: 373 NVMMG----------EYKRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRP 422
Query: 707 GASLPPFDFGKLKTELQER-HPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIF 765
LPP ++ K E TD DV++ AL+PQV + R GP T
Sbjct: 423 ADLLPP-EWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHRA-EGPHSVALTDAQ 480
Query: 766 LTGPKVGEEFEVKIQPP 782
L G+E + + P
Sbjct: 481 LKAEAEGDEKSLAVAGP 497
Score = 220 bits (564), Expect = 3e-62
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 784 GFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFN 843
R+++ + V + + + + + RDAHQSL+ATR+ D++ +
Sbjct: 3 ISRELVDPNSSPREIE-VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAA-- 59
Query: 844 NLYSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDN 901
+S+E WGGAT+D +RFL+E PWERL RK +PN QMLLRG N +GY +Y D
Sbjct: 60 GYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDE 117
Score = 171 bits (436), Expect = 2e-45
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 962 VKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAA 1021
+ + MLLRG N +GY +Y D VV +F D S + GMDVFRVFD++N N+ M A
Sbjct: 94 MPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAV 153
Query: 1022 GKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIK 1069
KAG + I YT + ++ Y LA +L+ G + +K
Sbjct: 154 KKAGKHAQGTICYTIS------PVHTVEGYVKLAGQLLDMGADSIALK 195
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase
structure, B enzymes, Zn2+ binding site, TIM-barrel
fold, lyase; 1.70A {Vibrio cholerae}
Length = 464
Score = 397 bits (1022), Expect = e-128
Identities = 83/292 (28%), Positives = 137/292 (46%), Gaps = 20/292 (6%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529
DMAG+L P AA+ L+ ++++ D+ +H+H H T+G +++ EAG D VD A+ SM
Sbjct: 179 DMAGILTPYAAEELVSTLKKQ-VDVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSM 237
Query: 530 SGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADV 589
SG P+ ++VA+LQG+ DTGLD+ + +AY+ R+ Y FE MK +A +
Sbjct: 238 SGTYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHAFE--GMMKGSDARI 295
Query: 590 YLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFM 649
+ ++PGG TN++ Q + + V + LG + VTP+S++VG A
Sbjct: 296 LVAQVPGGMLTNMESQLKQQNALDKLDLVLEEIPRVREELGFLPLVTPTSQIVGTQAVIN 355
Query: 650 VQNKLTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGAS 709
V + K L+G G L+++VL I RP
Sbjct: 356 VVLGER---------YKTITKETSGVLKGEYGKTPAPVNTELQARVLAGAEAITCRPADL 406
Query: 710 LPPFDFGKLKTELQE-------RHPEATDRDVMSAALYPQVTEDYLTFRESF 754
+ + L+ + + E DV++ AL+ QV +L R +
Sbjct: 407 IAA-EMPTLQDRVLQQAKEQHITLAENAIDDVLTIALFDQVGWKFLANRHNL 457
Score = 203 bits (519), Expect = 6e-57
Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 802 RQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVALR 861
+ K + + D RDAHQSL ATR+R D+L I+ + +SLE WGGATFD +R
Sbjct: 3 QAIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQI--GYWSLECWGGATFDSCIR 60
Query: 862 FLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDN 901
FL E PW+RL +++ +PN P QMLLRG N +GY +Y D+
Sbjct: 61 FLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADD 100
Score = 171 bits (437), Expect = 4e-46
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 962 VKSIDASMLLRGANAVGYTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNYLPNLILGMEAA 1021
+ + MLLRG N +GY +Y D+VV F + +V+ GMDVFRVFD++N + N+ ++A
Sbjct: 77 MPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAV 136
Query: 1022 GKAGGVVEAAISYTGDVSDPSKKKYDLKYYQNLADELVKAGTHVLCIK 1069
K G + + YT ++L+ + ++A +L + G + +K
Sbjct: 137 KKMGAHAQGTLCYTTS------PVHNLQTWVDVAQQLAELGVDSIALK 178
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 175 bits (446), Expect = 1e-51
Identities = 40/106 (37%), Positives = 61/106 (57%)
Query: 74 VQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMR 133
GDK+ ++ A + V +PG G + EEA+ + G PV+ KA+ GGGG+GMR
Sbjct: 3 SGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMR 62
Query: 134 VVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLG 179
+ E+ + F+ +S EA ++FG+ + IEKFI+ PRHI G
Sbjct: 63 IAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSSG 108
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 128 bits (322), Expect = 3e-31
Identities = 62/390 (15%), Positives = 121/390 (31%), Gaps = 46/390 (11%)
Query: 25 LNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDA-GIRFIGPSPYVVQQMGDKVAA 83
+ +I++VA+ DAI + G+R G + DK
Sbjct: 89 EVVEQIVKVAEMFGADAITTNNELFIAP---MAKACERLGLR--GAGVQAAENARDKNKM 143
Query: 84 RQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEE 143
R A +GV + +TT E+ + G P+I K Y G+ ++ E E+
Sbjct: 144 RDAFNKAGVKSIKN--KRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAED 201
Query: 144 NFQRASS------EAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQR 197
F R + KA E+F++ Q G + +
Sbjct: 202 EFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSD-----YISIEGIMAD 256
Query: 198 RHQKVVEIA---PAPH-----------LDINVRNKMTDLAVKLAKHVGYSNAGT-VEFLC 242
+ I P LD + K+ + A K + +G N T E
Sbjct: 257 GEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKANEGLGLQNCATHTEIKL 316
Query: 243 DESGQFYFIEVNARLQVEHTVT--EEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGF 300
++ + IE AR + + +++ G+D+ Q + V +L P
Sbjct: 317 MKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLLDVLCFGKDADLPDGLLDQEPYYV 376
Query: 301 AIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFA--------GAIISPYYDS 352
A P+T V + + L G + ++ +++
Sbjct: 377 ADCHLYPQHFKQNGQIPETAEDLVIEAIDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEA 436
Query: 353 L--LVKVIAHAADLQSSCAKMNRALREFRV 380
+ ++ Q + + + ++
Sbjct: 437 FNSIAAFELKGSNSQDVAESIRQIQQHAKL 466
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 118 bits (296), Expect = 6e-29
Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%)
Query: 8 ADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGF-LSERSDFAQAVLDAGIRF 66
AD+ Y+V P ++ I ++ + ++ V A+ L + + G+
Sbjct: 46 ADQHYIV----PKIDEVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQATERFQAIGVTV 101
Query: 67 IGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYG 126
I + DK + + G+ + E + LPV K G
Sbjct: 102 IVSPYAACELCFDKYTMYEYCLRQGIAHART--YATMASFEEALAAGEVQLPVFVKPRNG 159
Query: 127 GGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVV 186
+R V +E+VE+ F + + + +++ + + V D V
Sbjct: 160 SASIEVRRVETVEEVEQLFSKNTD----------LIVQELLVGQ-ELGVDAYVDLISGKV 208
Query: 187 HLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESG 246
S+ + + + +R+ + +L + G + D +G
Sbjct: 209 T------SIFIKEKLTMRAGETDKSRSVLRDDVFELVEHVLDGSGLVGPLDFDLF-DVAG 261
Query: 247 QFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEG 282
Y E+N R + E GV+ R
Sbjct: 262 TLYLSEINPRFGGGYPHAYE-CGVNFPAQLYRNLMH 296
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 114 bits (288), Expect = 3e-27
Identities = 59/379 (15%), Positives = 116/379 (30%), Gaps = 57/379 (15%)
Query: 25 LNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVL-----DAGIRFIGPSPYVVQQMGD 79
N E+ + K+ ++D + D L + +G + GD
Sbjct: 58 SNPDEVEQKVKDLNLDGA------ATCCLDTGIVSLARICDKENL--VGLNEEAAIMCGD 109
Query: 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKME 139
K ++A V + E LPVI KA G +G+ + +K E
Sbjct: 110 KYKMKEAFKKYNVNTARH--FVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEE 167
Query: 140 DVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRH 199
+ + F + K +E+FIE Q K +V+ +
Sbjct: 168 EAIDGFNETMNLTK----RDYCIVEEFIEGY-EFGAQAFVYK-NDVLFV-----MPHGDE 216
Query: 200 QKV----VEIA---PAPHLDINVRNKMTDLAVKLAKHVGYSN-AGTVEFLCDESGQFYFI 251
+ V + P D ++ K K K +G +N A V+ + ++ Y I
Sbjct: 217 TYMSHTAVPVGHYVPLDVKD-DIIEKTKTEVKKAIKALGLNNCAVNVDMILKDNE-VYII 274
Query: 252 EVNARLQVEHT--VTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTE 309
E+ R+ + E G++ + +A + K + G A
Sbjct: 275 ELTGRVGANCLPELVEINYGIEYYKMIASMAISENPLVFWSQKSKENKAGLARMI----- 329
Query: 310 DPAKNFQPDTGRIEVFRSGEGMGIRLDG-----ASAFAGAIISPYYDSL--LVKVIAHAA 362
+T + + + + D I + +S + ++I
Sbjct: 330 -------IETEKSGILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQIIVKEE 382
Query: 363 DLQSSCAKMNRALREFRVR 381
L K++ + +
Sbjct: 383 TLDKCKDKLDVIINNINII 401
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 90.0 bits (224), Expect = 4e-22
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
A K+ G++ AP+ G+V +I VK GD V+ G ++VL AMKME + AP G V+ +
Sbjct: 3 AGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 62
Score = 37.6 bits (88), Expect = 0.001
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
+ AP G V ++ VK D V+ G L+ +
Sbjct: 48 INAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 89.8 bits (223), Expect = 1e-21
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 906 HPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
+ + +PMPG V+ + VK GD V +G + V+ AMKM+ + A G VKS+
Sbjct: 17 NLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSV 76
Query: 966 DAS 968
Sbjct: 77 HCQ 79
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 84.4 bits (209), Expect = 9e-20
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
+++ G APM G++ ++ VK GDKV+ G +L+V+ AMKME +++P G VK +
Sbjct: 9 SSQETQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYR 68
Score = 37.0 bits (86), Expect = 0.004
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
+ +P G+V ++ + G + + LV
Sbjct: 54 IKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 81.9 bits (203), Expect = 3e-19
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
V APMPG V+ + V+VGD+V G L+VL AMKME + +P GVVK I
Sbjct: 5 ENVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRI 56
Score = 37.2 bits (87), Expect = 0.002
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
+ +P G V I VK G+ V+ G L+ L
Sbjct: 45 IPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 81.1 bits (201), Expect = 6e-19
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
V M G++ ++ VK GD++EKG + +L +MKME+ + A G+VK +
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEV 50
Score = 38.0 bits (89), Expect = 9e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946
+ A G V E++ K GD V +G L+ LS
Sbjct: 39 IVADRSGIVKEVKKKEGDFVNEGDVLLELS 68
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 72.0 bits (177), Expect = 1e-15
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
P + +P G + + V+ G VE G++ + MKM M + +G VK I
Sbjct: 5 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI 56
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 77.0 bits (189), Expect = 3e-15
Identities = 45/261 (17%), Positives = 80/261 (30%), Gaps = 43/261 (16%)
Query: 29 EIIRVAKENDVD-AIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAA 87
+ + +++D I P FL + +G S + DK +
Sbjct: 62 SMEKYLEKSDAFLIIAPEDDFLLYT---LTKKAEKYCENLGSSSRAIAVTSDKWELYKK- 117
Query: 88 IDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQR 147
+ V + P T+ I K G G+ ++ D
Sbjct: 118 LRGEVQV------PQTSLR-------PLDCKFIIKPRTACAGEGIGFSDEVPD------- 157
Query: 148 ASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAP 207
++FIE ++ V L + + + E+ + R VV P
Sbjct: 158 ------------GHIAQEFIE-GINLSVSLAVGEDVKCLSVNEQIINNFRYAGAVV---P 201
Query: 208 APHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEI 267
A + V+ ++ + AV+ + V N G V S Q Y IE+NARL
Sbjct: 202 AR-ISDEVKREVVEEAVRAVECVEGLN-GYVGVDIVYSDQPYVIEINARLTTPVVAFSRA 259
Query: 268 TGVDLVQSQIRVAEGMTLPEL 288
G + ++
Sbjct: 260 YGASVADLLAGGEVKHVRRQM 280
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 78.0 bits (191), Expect = 1e-14
Identities = 98/623 (15%), Positives = 197/623 (31%), Gaps = 140/623 (22%)
Query: 520 DVVDVAVDSMSGMTSQPSMGAVVAS---LQGSD--IDTGLDLKDISAYSAYWEQTRQ--- 571
D DV D + S+ + ++ S + G+ T L K + E+ +
Sbjct: 34 DCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINY 91
Query: 572 --LYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLL 629
L +P + S +Y+ + N F Y++ + + +++A LL
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----LL- 145
Query: 630 GDIIKVTPSSKVV--GDFAQFMV-QNK--LTSEEVLARAEELSFPKSV--VEFLQGAIGT 682
++ P+ V+ G ++ K + + L+ + + + +
Sbjct: 146 ----ELRPAKNVLIDG-----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNS 194
Query: 683 PYQGFPEPLRSKVLKDMPRIEGRP-GASLPPFDFGKLKTEL-----QERHPEATD--RDV 734
P + E L+ + + P R +S ++ EL + + +V
Sbjct: 195 P-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 735 MSAALYPQVTEDY-------LTFRESFGPVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQ 787
+ + + LT R K T FL+
Sbjct: 254 QN----AKAWNAFNLSCKILLTTR------FKQVTD-FLSAATTTHISLDHHSM--TL-- 298
Query: 788 ILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYS 847
+ K + D +D L V + + ++S + L +
Sbjct: 299 -TPDEVKSLLLKYL---------DCRPQD-----LPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 848 LENWGGATFDVALRFLHECPWERLE--EMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHI 905
+NW D + LE E RK F L +V +P + HI
Sbjct: 344 WDNWKHVNCDKLTTIIESS-LNVLEPAEYRKM-----FDRL-----SV----FPPS-AHI 387
Query: 906 HPKAAKSVPGQV-----GAPMPGSVMEIRVKVGDK--VEKGAA--LVVLSAMKMEMVVQA 956
P + + VM + K+ VEK + + ++ +E+ V+
Sbjct: 388 --------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 957 PVQGVV--KSIDASMLLRGANAVGYT-NYPDNVVYKF-------CDLSVQVGMDVFR-VF 1005
+ + +D + + ++ Y D Y + + M +FR VF
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVF 497
Query: 1006 DSLNYLPNLILGMEAAGKAGGVVEAAIS----YTGDVSDPSKKKYDLKYYQNLADELVKA 1061
+L I A A G + + Y + D + KY+ + + D L K
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYE-RLVNAILDFLPKI 555
Query: 1062 GTHVLCIK----VRILLSPVNKS 1080
+++C K +RI L +++
Sbjct: 556 EENLICSKYTDLLRIALMAEDEA 578
Score = 67.2 bits (163), Expect = 3e-11
Identities = 71/624 (11%), Positives = 146/624 (23%), Gaps = 252/624 (40%)
Query: 368 CAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQK 427
+K +++F ++ N FL++ + + QP+ +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTE-------------------QRQPSMMT--R 110
Query: 428 LLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRAAKLLIGAI 487
+ L N V+ P + L + LL+ R
Sbjct: 111 MYIEQRDRLYNDNQ-----VFAKYNVSRLQPYLKLRQ--------ALLELR--------- 148
Query: 488 REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQG 547
++ I G ++ G V +
Sbjct: 149 --PAKNVLID-------G-----VLGS---GKTWV------------------ALDVCLS 173
Query: 548 SDIDTGLDLKDISAYSAYW-------------EQTRQLYAPFECTTTMKSGNADVYLNEI 594
+ +D + +W E ++L + + +D N I
Sbjct: 174 YKVQCKMD------FKIFWLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDHSSN-I 223
Query: 595 PGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGD-----IIK---------VTPSSK 640
L+ + L + K Y L+L + +T K
Sbjct: 224 K------LRIHSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 641 VVGDFAQFMVQNKLTSEEVLARAEELSF-PKSVVEFLQGAIGTPYQGFPE------PLR- 692
V DF ++ + ++ P V L + Q P P R
Sbjct: 276 QVTDFLSAATTTHISLDH-----HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 693 ---SKVLKDMP-RIEGRPGASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYL 748
++ ++D + K ++ + + L P
Sbjct: 331 SIIAESIRDGLATWDN-------------WKHVNCDKLTTIIESSL--NVLEPAEYRKMF 375
Query: 749 TFRESFGPVDKLDTRIFLTGPKVGEEFEVKIQPPQGFRQIL----KSKGPEAFAKAVRQN 804
+ +F P I P ++ +
Sbjct: 376 ---DRLS--------VF---PP-----SAHI-PTILL-SLIWFDVIKSDVMVVVNKL-HK 413
Query: 805 KSLL----------LMDTTFR---------DAHQSLLA--TRVRSHDLLKISP------- 836
SL+ + H+S++ ++ D + P
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 837 --FVAH------------KFNNLYSLENWGGATFDVALRFL-----HEC-PWE------- 869
+ H F ++ D RFL H+ W
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVF---------LD--FRFLEQKIRHDSTAWNASGSILN 522
Query: 870 ---RLEEMRKQI-PNIP-FQMLLR 888
+L+ + I N P ++ L+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVN 546
Score = 59.9 bits (144), Expect = 4e-09
Identities = 89/699 (12%), Positives = 203/699 (29%), Gaps = 252/699 (36%)
Query: 95 VPGTPGPITTTEEAMEFCLK--------YGLPVIFKAAYGGGGRGMRVVRK-MEDV-EEN 144
V P I + EE ++ + L + + +V+K +E+V N
Sbjct: 38 VQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLS------KQEEMVQKFVEEVLRIN 90
Query: 145 F----QRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQ 200
+ +E + M+IE +R D+ N ++ + +V R Q
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIE---QR----------DRLYNDNQVFAKY-NVSR-LQ 135
Query: 201 KVVEIAPA-----PHLDINVRNKM-----TDLAVKLAK----------HVGYSNAGTVEF 240
+++ A P ++ + + + T +A+ + + + N
Sbjct: 136 PYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--- 191
Query: 241 LCDESGQ--------FYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQ 292
C+ Y I+ N + +H+ ++ + +Q+++R L +
Sbjct: 192 -CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELR----------RLLK 239
Query: 293 EKISPQG---------------FAIQCR--VTTEDPA-KNFQPDTGRIEVFRSGEGMGIR 334
K F + C+ +TT +F + M +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 335 LD-GASAFAGAI-------------ISPYYDSLLVKVIAHAADLQSSCAKMNRALREFRV 380
D S + +P + +IA ++R+
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIA-------------ESIRDGLA 342
Query: 381 RGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLNYLGTVLVNGP 440
+V ++ + +++ ++ L+P + R K+ + L
Sbjct: 343 T-----WDNWKHVNCDK--LTTIIES-SLNV------LEPAEYR--KMFDRLS------- 379
Query: 441 STPLATPLLPAEVTPPVPEIPLGKL---INTFDMAGLLKPRAAKLLIGAIREKHP-DIPI 496
+ P +P I L + + D+ ++ L+ EK P + I
Sbjct: 380 -------VFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV----EKQPKESTI 426
Query: 497 HIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSM-GAVVASLQGSDIDTGLD 555
I + ++ + ++ ++ ++V I D
Sbjct: 427 SIP-----------------------SIYLELKVKLENEYALHRSIVDHYN---IPKTFD 460
Query: 556 LKDISA-----YSAYW---------EQTRQLYAPFECTTTMKSGNADVYLN------EIP 595
D+ Y Y E + F V+L+ +I
Sbjct: 461 SDDLIPPYLDQYF-YSHIGHHLKNIEHP-ERMTLFR----------MVFLDFRFLEQKI- 507
Query: 596 GGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPS-SKVVGDFAQFMVQNKL 654
++ + + A + + +K Y+ I P ++V F+ +
Sbjct: 508 --RHDSTAWNASG-SILNTLQQLKF-YKPY------ICDNDPKYERLVNAILDFLPK--- 554
Query: 655 TSEEVLARAEELSFPKSVVEFLQGAIGTPYQG-FPEPLR 692
EE L ++ L+ A+ + F E +
Sbjct: 555 -IEENLICSKYTD-------LLRIALMAEDEAIFEEAHK 585
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 68.6 bits (168), Expect = 3e-14
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 914 PGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
P + +P G + + V+ G VE G++ + MKM M + +G VK I
Sbjct: 17 PTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI 68
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A
Length = 317
Score = 71.8 bits (177), Expect = 2e-13
Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 40/218 (18%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQMG-----DKVAARQAAIDSGVPIVPGT--PGPITTTEEA 108
Q LD GIR+ G +G DK + +GVP P A
Sbjct: 84 QGALDFYGIRYTGSGV-----LGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARA 138
Query: 109 MEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE 168
+ K GLP+ K A G + V+ + + A A + +EK IE
Sbjct: 139 TDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEA-----ATHDKIVI-VEKSIE 192
Query: 169 RPRHIEVQLLGDKAGNVVHL------------YERDCSVQRRHQKVVEIAPAPHLDINVR 216
+ GD ++ + Y + + ++ + P L
Sbjct: 193 GGGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDT---QY-----LIPCG-LPAEQE 243
Query: 217 NKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
++ +A + +G ++ G +F+ D +G YF+EVN
Sbjct: 244 TELKRIARRAFDVLGCTDWGRADFMLDAAGNAYFLEVN 281
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Length = 369
Score = 71.8 bits (177), Expect = 2e-13
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 20/177 (11%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG- 127
P ++ D++ + GVP P P + E+ E + GLP + K GG
Sbjct: 86 PPAKALEVAQDRLREKTFFQGLGVPTPPFHP--VDGPEDLEEGLKRVGLPALLKTRRGGY 143
Query: 128 GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187
G+G +VR E+ E A A G + +E F+ R + + + + G V
Sbjct: 144 DGKGQALVRTEEEALE--------ALKALGGRGLILEGFVPFDREVSLLAVRGRTGEVAF 195
Query: 188 --LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT--VEF 240
L E + + +APAP ++ K A++ + + Y G +EF
Sbjct: 196 YPLVE---NRHWGGILRLSLAPAPGASEALQKKAEAYALRAMEALDY--VGVLALEF 247
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 69.4 bits (170), Expect = 7e-13
Identities = 56/255 (21%), Positives = 96/255 (37%), Gaps = 19/255 (7%)
Query: 18 LPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQM 77
+ + + E R + V S A+ + GI + P V++
Sbjct: 30 VYVPALPMVLGE--RPKELEGVTVALERCVSQSRGLAAARYLTALGIPVV-NRPEVIEAC 86
Query: 78 GDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRK 137
GDK A A +G+P P T T EEA+ +G PV+ K G GR +
Sbjct: 87 GDKWATSVALAKAGLP-QPKT-ALATDREEALRLMEAFGYPVVLKPVIGSWGRL--LAXX 142
Query: 138 MEDVEENFQRASSEAKAAFGNGAMFIEKFIERP-RHIEVQLLGDKAGNVVHLYERDCSVQ 196
E F + +I++++E+P R I V ++G++ + R +
Sbjct: 143 XXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGER---AIAAIYR----R 195
Query: 197 RRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNAR 256
H + + ++ L+VK A+ VG V+ E G EVN
Sbjct: 196 SAHWITNTARGGQAENCPLTEEVARLSVKAAEAVGGGVVA-VDLFESERG-LLVNEVNHT 253
Query: 257 LQVEHTVTEEITGVD 271
++ ++ + TGVD
Sbjct: 254 MEFKN--SVHTTGVD 266
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 69.9 bits (172), Expect = 1e-12
Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 22/191 (11%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG- 127
PS ++ + +K ++ G+P+ T E + + G P++ K+
Sbjct: 113 PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAY 172
Query: 128 GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187
GRG V +D+ EA A + ++ EK+ + V ++ V+
Sbjct: 173 DGRGNFRVNSQDDIP--------EALEALKDRPLYAEKWAYFKMELAVIVVKT-KDEVLS 223
Query: 188 --LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT--VEFLCD 243
E +VQ + APA ++ + K +LA K G VE
Sbjct: 224 YPTVE---TVQEDSICKLVYAPARNVSDAINQKAQELARKAVAAFDG--KGVFGVEMFLL 278
Query: 244 ESGQFYFIEVN 254
E +
Sbjct: 279 EDDSIM---LC 286
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 66.8 bits (164), Expect = 1e-11
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 24/191 (12%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG- 127
++ + ++ + A +G+P+ + E+ E + P + K GG
Sbjct: 102 QGSQLLSKTQNRFTEKNAIEKAGLPVATYRL--VQNQEQLTEAIAELSYPSVLKTTTGGY 159
Query: 128 GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187
G+G V+R DV+ EA+ +EK++ + + V ++ +G
Sbjct: 160 DGKGQVVLRSEADVD--------EARKLANAAECILEKWVPFEKEVSVIVIRSVSGETKV 211
Query: 188 --LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT--VEFLCD 243
+ E ++ + I PA + + K A LA + GT VE
Sbjct: 212 FPVAE---NIHVNNILHESIVPAR-ITEELSQKAIAYAKVLADELEL--VGTLAVEMFAT 265
Query: 244 ESGQFYFIEVN 254
G+ Y +N
Sbjct: 266 ADGEIY---IN 273
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; 1.55A {Burkholderia
ambifaria} PDB: 3uvz_A
Length = 419
Score = 66.9 bits (164), Expect = 1e-11
Identities = 46/194 (23%), Positives = 71/194 (36%), Gaps = 25/194 (12%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVP----GTPGPITTTEEAMEFCLKYGLPVIFKAA 124
P+ V D++A ++ SGVP+ P + + ++A LP I K A
Sbjct: 123 PAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAAL---DAVLPGILKTA 179
Query: 125 YGG-GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAG 183
G G+G V + + A AA G +EK + + + G
Sbjct: 180 RLGYDGKGQVRVSTAREARD--------AHAALGGVPCVLEKRLPLKYEVSALIARGADG 231
Query: 184 NVVH--LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT--VE 239
L + +V + I PAP D + AV++A +GY G VE
Sbjct: 232 RSAAFPLAQ---NVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGY--VGVLCVE 286
Query: 240 FLCDESGQFYFIEV 253
F E G F E+
Sbjct: 287 FFVLEDGSFVANEM 300
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell
WALL, peptidoglycan synthesis, vancomycin, ADP binding;
HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2
d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Length = 306
Score = 65.2 bits (160), Expect = 2e-11
Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 44/221 (19%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQMG-----DKVAARQAAIDSGVPIVPGTPGPITTTEEAME 110
Q +L+ G+ + G M DK+ ++ +G+P+ P E+ +
Sbjct: 73 QGMLELMGLPYTGSGV-----MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLS 127
Query: 111 FCL-----KYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEK 165
GLPVI K + G GM V +++ + A + IEK
Sbjct: 128 DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA-----FQHDEEVL-IEK 181
Query: 166 FIERPRHIEVQLLGDKAGNVVHL------------YERDCSVQRRHQKVVEIAPAPHLDI 213
++ V +LG++ + + + D + ++ PA L+
Sbjct: 182 WLS-GPEFTVAILGEEILPSIRIQPSGTFYDYEAKFLSDET---QY-----FCPAG-LEA 231
Query: 214 NVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
+ + L +K +G G ++ + D GQFY +E N
Sbjct: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEAN 272
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 66.6 bits (162), Expect = 4e-11
Identities = 81/524 (15%), Positives = 155/524 (29%), Gaps = 208/524 (39%)
Query: 540 AVVASLQGSDIDTGLDLKDI--SAYSAYWEQTRQLYAP-----FECTTTMKS-------- 584
A+ A L + T + K++ + +A R F +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 585 -GNADVYLNEIPGGQYTNLQ--FQAYSLGLGEFFE--------------DVKKAYREANL 627
GN D Y E L+ +Q Y + +G+ + D +K + +
Sbjct: 163 QGNTDDYFEE--------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--- 211
Query: 628 LLG-DIIK------VTP----------SSKVVG--DFAQFMVQNK---LTSEEVLAR--- 662
G +I++ TP S ++G A ++V K T E+ +
Sbjct: 212 --GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 663 ----AEEL-------------SFPKSVVEFLQGA--IGT-PYQGFPEP-LRSKVLKD-MP 700
++ L SF SV + + IG Y+ +P L +L+D +
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 701 RIEGRP-------GASLPPFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRES 753
EG P + +++ + + + + +L
Sbjct: 330 NNEGVPSPMLSISNLTQE-----QVQDYVNKTNSHLPAGKQVEISLVN------------ 372
Query: 754 FGPVDKLDTRIF-LTGP-----KVGEEFEVKIQPPQGFRQILKSKGPEAFAK-AVRQNKS 806
G + ++GP + K + P G Q S+ P F++ ++ +
Sbjct: 373 -GA------KNLVVSGPPQSLYGLNLTLR-KAKAPSGLDQ---SRIP--FSERKLKFSNR 419
Query: 807 LLLMDTTFRDAHQSLL--ATRVRSHDL-----------LKISPFVAHKFNNLYSLENWGG 853
L + + F H LL A+ + + DL ++I P +Y
Sbjct: 420 FLPVASPF---HSHLLVPASDLINKDLVKNNVSFNAKDIQI-P--------VYD------ 461
Query: 854 ATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIH-PKAAKS 912
TFD L + I ++R + + +
Sbjct: 462 -TFD----------GSDLRVLSGSISERIVDCIIR--------------LPVKWETTTQF 496
Query: 913 VPGQV---GAPMPGSVMEI-----RVKVGDKVEKGAALVVLSAM 948
+ G PG + R K G G ++V +
Sbjct: 497 KATHILDFG---PGGASGLGVLTHRNKDG----TGVRVIVAGTL 533
Score = 56.2 bits (135), Expect = 6e-08
Identities = 101/612 (16%), Positives = 174/612 (28%), Gaps = 212/612 (34%)
Query: 559 ISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEIPGGQYTNLQFQAYSLGLGEFFEDV 618
+ AYS TR P T+ G+ + L +P T F A L +F + +
Sbjct: 1 MDAYS-----TR----PL----TLSHGSLEHVL-LVP----TASFFIASQL-QEQFNKIL 41
Query: 619 KKAYREANLLLGDIIKVTPSSKV--VGDFAQFMVQNKLTSEEVLARAEELSFPKSVVEF- 675
+ D P++ VG F + V + + +V + L+ + EF
Sbjct: 42 PEPTEG---FAADD---EPTTPAELVGKFLGY-VSSLVEPSKVGQFDQVLNL--CLTEFE 92
Query: 676 ---LQGA-IGTPYQGFPEPLRSKVLKDMPRI----EGRPGASLPPFDFGKLKTELQERHP 727
L+G I + + ++K I R A P ++
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP----------FDKKSN 142
Query: 728 EATDRDVMS--AALYPQ-----VTEDYLTFRESFGPVDKLDTR-IFLTGPKVGEEFEVKI 779
A R V A L T+DY F E L R ++ T + + I
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDY--FEE-------L--RDLYQTYHVLVGDL---I 188
Query: 780 QPPQGFRQILK--SKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLL--ATRVRSHDLLKIS 835
+ + L + K Q ++L L + D L
Sbjct: 189 KF---SAETLSELIRTTLDAEKVFTQGLNIL-----------EWLENPSNTPDKDYLLSI 234
Query: 836 PFVAHKFNNLYSLENWGGATFDVALRFLHECP---------------------------- 867
P ++ + L A + V + L P
Sbjct: 235 P-ISCPLIGVIQL-----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 868 WERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMPGSVME 927
WE ++ + F + +R A T+ P + + S+ G P P M
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL------EDSLENNEGVPSP---M- 338
Query: 928 IRVKVGDKVEKGAALVV--LSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYTNYPDN 985
L + L+ Q VQ V ++ + + N N
Sbjct: 339 --------------LSISNLT--------QEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 986 VV--------YKFC----DLSVQVGMDVFRV-FD------SLNYLP-------NLILGME 1019
+V Y G+D R+ F S +LP +L +
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL---LV 433
Query: 1020 AAGK--AGGVVEAAISY-----------TGDVSDPSKKKYDLKYYQNLADELVK------ 1060
A +V+ +S+ T D SD + + + D +++
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS--ERIVDCIIRLPVKWE 491
Query: 1061 -----AGTHVLC 1067
TH+L
Sbjct: 492 TTTQFKATHILD 503
Score = 51.6 bits (123), Expect = 2e-06
Identities = 114/683 (16%), Positives = 202/683 (29%), Gaps = 208/683 (30%)
Query: 169 RP---RH--IEVQLLGDKAGNV---VHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMT 220
RP H +E LL V S + ++ +I P P ++ T
Sbjct: 7 RPLTLSHGSLEHVLL------VPTASFFI---ASQLQ--EQFNKILPEPTEGFAADDEPT 55
Query: 221 DLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVA 280
A + K +GY V L + S F +V L + + G D + + A
Sbjct: 56 TPAELVGKFLGY-----VSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGND-IHA--LAA 106
Query: 281 EGMTLPELGLTQEKISPQGFAIQC----RVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLD 336
L + I+ R+ + P +FR+ +L
Sbjct: 107 ---KLL--QENDTTLVKTKELIKNYITARIMAKRPFDKKSNS----ALFRAVGEGNAQL- 156
Query: 337 GASAFAG-AIISPY----------YDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKT 385
+ F G Y Y L+ +I +A+ S + + +G+
Sbjct: 157 -VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN- 214
Query: 386 NIPFLLNVLTNQKFVNGAVDTYFIDEN----PQLFTLQPTKNRAQKLLNYLGTVLVNGPS 441
+L L N + D ++ P + +Q L +Y+ T + G +
Sbjct: 215 ----ILEWLENP---SNTPDKDYLLSIPISCPLIGVIQ--------LAHYVVTAKLLGFT 259
Query: 442 TPLATPLLPAEVTPPVPEIPLGKLI------NTFDMAGLLKPRAAKLL--IGAIR--EKH 491
L T + I +F ++ +A +L IG R E +
Sbjct: 260 PGELRSYLKG-ATGHSQGLVTAVAIAETDSWESFFVSVR---KAITVLFFIGV-RCYEAY 314
Query: 492 PDIPIHIHTHDTS---GAGVAS-MIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQ- 546
P+ + + S GV S M++ + + V V+ + + P+ V SL
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN--SHLPAGKQVEISLVN 372
Query: 547 GSD--IDTG---------LDLKDISAYSAYWEQTRQLYAPFECTTTMKSGNADVYLNEI- 594
G+ + +G L L+ A S +Q+R PF + K ++ +L +
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGL-DQSR---IPF---SERKLKFSNRFL-PVA 424
Query: 595 -PGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNK 653
P F LL A ++
Sbjct: 425 SP------------------FHSH----------LLVP--------------ASDLINKD 442
Query: 654 LTSEEVLARAEELSFPKSVVEFLQGAIGTPYQGFPEPLRSKVLKDMPRIEGRPGASLPPF 713
L V A+++ P V + G D+ R
Sbjct: 443 LVKNNVSFNAKDIQIP--VYDTFDG------------------SDL-R------------ 469
Query: 714 DFGKLKTELQERHPEATDRDVMSAALY-PQVTEDYLTFRESFGP-----VDKLDTRIFL- 766
L + ER + ++ + T+ T FGP + L R
Sbjct: 470 ---VLSGSISERIVDC----IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 767 TGPKV--GEEFEVKIQPPQGFRQ 787
TG +V ++ GF+Q
Sbjct: 523 TGVRVIVAGTLDINPDDDYGFKQ 545
Score = 46.6 bits (110), Expect = 5e-05
Identities = 62/407 (15%), Positives = 115/407 (28%), Gaps = 127/407 (31%)
Query: 5 RQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIH------PGYGFLSERSDFAQA 58
R D + +GL + +L P D D + P G + A
Sbjct: 200 RTTLDAEKVFTQGLN-ILEWLENPS-----NTPDKDYLLSIPISCPLIGVIQ----LAHY 249
Query: 59 VLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLP 118
V+ A + +G +P G+ + + A +V T + E+ ++ +
Sbjct: 250 VVTA--KLLGFTP------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 119 VIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKA-----AFGNGA---MF-------- 162
V+F G+R E + S G M
Sbjct: 302 VLFFI-------GVRC-------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 163 -IEKFIER-----P--RHIEVQLL-GDK----AGNVVHLYERDCSVQRRHQKVVEIAPAP 209
++ ++ + P + +E+ L+ G K +G LY + ++++ AP
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK------AP-S 400
Query: 210 HLDINVRNKMTDLAVKLAK---------HVGYSNAGTVEFLCDE--SGQFYFIEVNARLQ 258
LD + R ++ +K + H + + + F + ++
Sbjct: 401 GLDQS-RIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 259 VEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDP-----AK 313
V T G DL RV G + P
Sbjct: 459 VYDTFD----GSDL-----RVLSGSISERI---------------VDCIIRLPVKWETTT 494
Query: 314 NFQP----DTGRIEVFRSG-------EGMGIRLDGASAFAGAIISPY 349
F+ D G G +G G+R+ A Y
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 44.3 bits (104), Expect = 2e-04
Identities = 61/366 (16%), Positives = 102/366 (27%), Gaps = 140/366 (38%)
Query: 330 GMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRALRE---FRVRGVKTN 386
GMG+ L Y S + + + AD ++ F + +
Sbjct: 1630 GMGMDL-------------YKTSKAAQDVWNRAD---------NHFKDTYGFSILDI--- 1664
Query: 387 IPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLL-NYLGTVLVNGPSTPLA 445
+ NP T+ + +++ NY + L
Sbjct: 1665 ----------------------VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 446 TPLLPAEVTPPVPEIPLGKLINTFDM-AGLLK------PRAAKLLIG-----AIREKHPD 493
T + E+ TF GLL P A L+ ++ K
Sbjct: 1703 TEKIFKEINEHSTSY-------TFRSEKGLLSATQFTQP--ALTLMEKAAFEDLKSKGL- 1752
Query: 494 IPIHIHTHDTSGAG------VASMIACA-----EAGADVV-------DVAVDSMSGMTSQ 535
IP D + AG A + + A E+ +VV VAV S
Sbjct: 1753 IP-----ADATFAGHSLGEYAA-LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 536 PSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQL--YAPFECTTTMKSGNADVYLNE 593
M A+ + L+ + ++T L N Y N
Sbjct: 1807 YGMIAINPGRVAASFSQE-ALQYVVERVG--KRTGWLVEIV-----------N---Y-N- 1847
Query: 594 IPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNK 653
+ QY + G+ + N+L + IK+ K+ D +
Sbjct: 1848 VENQQY------VAA---GD-LRALDTV---TNVL--NFIKL---QKI--DIIELQKS-- 1885
Query: 654 LTSEEV 659
L+ EEV
Sbjct: 1886 LSLEEV 1891
Score = 40.8 bits (95), Expect = 0.003
Identities = 65/399 (16%), Positives = 116/399 (29%), Gaps = 179/399 (44%)
Query: 716 GKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDTRIFLTGPKVGEEF 775
G +L + A +DV + A +++ F++++G LD I + P
Sbjct: 1632 GM---DLYKTSKAA--QDVWNRA------DNH--FKDTYG-FSILD--IVINNPV---NL 1672
Query: 776 EVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKIS 835
+ +G K +R+N S ++ +T ++ + + +
Sbjct: 1673 TIHFGGEKG--------------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 836 PFVAHKFNN----LYSLENWGGATFDVALRFLHEC-PWERLEEMRKQIPNIPFQMLLRGA 890
F + L + + T AL L E +E L+ +G
Sbjct: 1719 ------FRSEKGLLSATQF----T-QPAL-TLMEKAAFEDLKS--------------KG- 1751
Query: 891 NAVGYTNYPDNEM---HIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLS- 946
P + H S+ G E AAL L+
Sbjct: 1752 ------LIPADATFAGH-------SL---------G---EY-----------AALASLAD 1775
Query: 947 AMKMEMVVQAPVQGVVKSIDASMLLRG---ANAV-----GYTNY------PDNVVYKFCD 992
M +E +V+ VV RG AV G +NY P V F
Sbjct: 1776 VMSIESLVE-----VVF-------YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 993 LSVQVGMDVFRVFDSLNYLPNLILGMEAAGKAGGVVEAA----------ISYTGDVSDPS 1042
++Q ++ + G +VE + GD+
Sbjct: 1824 EALQYVVE------------------RVGKRTGWLVEIVNYNVENQQYVAA--GDLR--- 1860
Query: 1043 KKKYDLKYYQNLADELVKAGTHVLCIKVR-ILLSPVNKS 1080
L N+ + IK++ I + + KS
Sbjct: 1861 ----ALDTVTNVLNF----------IKLQKIDIIELQKS 1885
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 63.5 bits (155), Expect = 2e-10
Identities = 50/263 (19%), Positives = 85/263 (32%), Gaps = 37/263 (14%)
Query: 6 QKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSE----RSDFAQAVLD 61
Q A SY V ++ + V + DAI P E D
Sbjct: 58 QVAHRSY--------VGNMMDKDFLWSVVEREKPDAIIP------EIEAINLDALFEFEK 103
Query: 62 AGIRFIGPSPYVVQQ-MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVI 120
G + P+ M + ++ VP TT +E E C K G P
Sbjct: 104 DGYFVV-PNARATWIAMHRERLRETLVKEAKVPTSR--YMYATTLDELYEACEKIGYPCH 160
Query: 121 FKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD 180
KA G+G V+ ED+ + ++ A + KA + +E+ I+ + +
Sbjct: 161 TKAIMSSSGKGSYFVKGPEDIPKAWEEA--KTKARGSAEKIIVEEHIDFDVEVTELAVRH 218
Query: 181 KAGNVVHLYERDCS----VQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAG 236
N + Q PA + ++ +A ++ +G G
Sbjct: 219 FDEN-GEIVTTFPKPVGHYQIDGDYHASWQPAE-ISEKAEREVYRIAKRITDVLGG--LG 274
Query: 237 T--VE-FLCDESGQFYFIEVNAR 256
VE F+ + + EV+ R
Sbjct: 275 IFGVEMFVKG--DKVWANEVSPR 295
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 61.8 bits (151), Expect = 5e-10
Identities = 47/264 (17%), Positives = 86/264 (32%), Gaps = 44/264 (16%)
Query: 6 QKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSE----RSDFAQAVLD 61
A S+ V L+ + RV + I P E +D + +
Sbjct: 50 HVAHRSH--------VINMLDGDALRRVVELEKPHYIVP------EIEAIATDMLIQLEE 95
Query: 62 AGIRFIGPSPYVVQQMGDKVAARQAAIDS-GVPIVPGTPGPITTTEEAMEFCLKYGLPVI 120
G+ + P + ++ R+ A + +P + E G P I
Sbjct: 96 EGLNVV-PCARATKLTMNREGIRRLAAEELQLPTSTYRF--ADSESLFREAVADIGYPCI 152
Query: 121 FKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD 180
K G+G +R E + + ++ A +A G G + +E ++ I + +
Sbjct: 153 VKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRA--GAGRVIVEGVVKFDFEITLLTVSA 210
Query: 181 KAGN-----VVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNA 235
G V H Q P + + ++A K+ +G
Sbjct: 211 VDGVHFCAPVGH-------RQEDGDYRESWQPQQ-MSPLALERAQEIARKVVLALGG--Y 260
Query: 236 GT--VE-FLCDESGQFYFIEVNAR 256
G VE F+C + + F EV+ R
Sbjct: 261 GLFGVELFVCGD--EVIFSEVSPR 282
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 60.1 bits (146), Expect = 1e-09
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 8/131 (6%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSM 529
D G + P+ K L+ +R+ + +P+ H HD G+ + I + G D +D ++
Sbjct: 164 DSFGGITPKEVKNLLKEVRK-YTHVPVGFHGHDNLQLGLINSITAIDDGIDFIDA---TI 219
Query: 530 SGM---TSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKSGN 586
+GM M ++ L +D + + + Y M SG
Sbjct: 220 TGMGRGAGNLKMELLLTYLN-KHHGLNVDFNVLGNIITTFTPLLEKYQWGTNLPYMLSGA 278
Query: 587 ADVYLNEIPGG 597
++ E+
Sbjct: 279 NNIPQKEVMDW 289
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp,
purine biosynthesis, antimicrobial, ATP-binding,
decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli}
SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A*
1b6s_A*
Length = 355
Score = 60.3 bits (147), Expect = 1e-09
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 23/177 (12%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG- 127
+ V + D++ +Q +P P + E + G I K GG
Sbjct: 69 VNRDVFPIIADRLTQKQLFDKLHLPTAPWQL--LAERSEWPAVFDRLGELAIVKRRTGGY 126
Query: 128 GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187
GRG +R E + A G +E+ I + + G+ V
Sbjct: 127 DGRGQWRLRANETEQL----------PAECYGECIVEQGINFSGEVSLVGARGFDGSTVF 176
Query: 188 --LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT--VEF 240
L ++ + +A + + + ++ + + +GY G +E
Sbjct: 177 YPLTH---NLHQDGILRTSVAFPQ-ANAQQQARAEEMLSAIMQELGY--VGVMAMEC 227
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 59.0 bits (144), Expect = 2e-09
Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 58/253 (22%)
Query: 28 PEIIRVAKENDVD----AIHPGYGFLSERSD-FAQAVLD-AGIRFIGPSPYVVQQMG--- 78
++ + K D+D A+H YG E D Q L+ GI + G + +
Sbjct: 45 EKMDLIEKAKDIDFALLALHGKYG---E--DGTVQGTLESLGIPYSGSNM-----LSSGI 94
Query: 79 --DKVAARQAAIDSGVPIVPG---TPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMR 133
DK +++ G+ T +E + G P++ K GG G++
Sbjct: 95 CMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKL----GFPLVVKPNSGGSSVGVK 150
Query: 134 VVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHL----- 188
+V +++ + + + + IEK+I+ I + K ++ +
Sbjct: 151 IVYDKDELISMLETV-----FEWDSEVV-IEKYIK-GEEITCSIFDGKQLPIISIRHAAE 203
Query: 189 -------YERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFL 241
Y+ + L ++ ++ ++ K + S V+ +
Sbjct: 204 FFDYNAKYDDAST---------IEEVIE-LPAELKERVNKASLACYKALKCSVYARVDMM 253
Query: 242 CDESGQFYFIEVN 254
+ G Y +EVN
Sbjct: 254 VKD-GIPYVMEVN 265
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell
WALL, antibiotic resistance, membrane, peptidog
synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium}
SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Length = 343
Score = 58.0 bits (141), Expect = 6e-09
Identities = 42/215 (19%), Positives = 78/215 (36%), Gaps = 33/215 (15%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQ----MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEF 111
Q + + +GI F+G +Q M DK A ++G+ ++
Sbjct: 109 QGLFELSGIPFVGCD---IQSSAICM-DKSLTYIVAKNAGIATPAF----WVINKDDRPV 160
Query: 112 CLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPR 171
+ PV K A G G V+K+ +E A A + + + IE+ +
Sbjct: 161 AATFTYPVFVKPARSGSSFG---VKKVNSADE-LDYAIESA-RQYDSKIL-IEQAVS-GC 213
Query: 172 HIEVQLLGDKAGNVV------------HLYERDCSVQRRHQKVVEIAPAPHLDINVRNKM 219
+ +LG+ A VV ++ ++ + V PA L R ++
Sbjct: 214 EVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPAD-LSAEERGRI 272
Query: 220 TDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
+ K+ K +G V+ ++G+ EVN
Sbjct: 273 QETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVN 307
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for
ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides}
SCOP: c.30.1.2 d.142.1.1
Length = 377
Score = 56.9 bits (138), Expect = 2e-08
Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 37/221 (16%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQMG-----DKVAARQAAIDSGVPIVPGTPGPIT----TTE 106
Q + ++G G DK ++ +G+ +
Sbjct: 112 QGLFKLLDKPYVGAPL-----RGHAVSFDKALTKELLTVNGIRNTKYIV--VDPESANNW 164
Query: 107 EAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKF 166
+ + G V KAA G G + ++ + EE + A S++ + + IE+
Sbjct: 165 SWDKIVAELGNIVFVKAANQGSSVG---ISRVTNAEE-YTEALSDS-FQYDYKVL-IEEA 218
Query: 167 IERPRHIEVQLLGDKAGNVVHLYERDCSVQRRH-------------QKVVEIAPAPHLDI 213
+ R +EV ++G+ V + Q V PA L
Sbjct: 219 VNGARELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQIPAQ-LSP 277
Query: 214 NVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
V ++ +A+ K + ++FL DE+ Y E N
Sbjct: 278 EVTKEVKQMALDAYKVLNLRGEARMDFLLDENNVPYLGEPN 318
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine
nucleotide biosynthetic pathway, structural genomics,
NPPSFA; 2.35A {Aquifex aeolicus}
Length = 365
Score = 56.8 bits (138), Expect = 2e-08
Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 28/191 (14%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG- 127
P+P + ++ + G P+ +E ++ + LPV+ KA G
Sbjct: 82 PNPQALYVKKSRIREKLFLKKHGFPVPEFLV---IKRDEIIDALKSFKLPVVIKAEKLGY 138
Query: 128 GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187
G+G ++K+ED + + + IE+F++ I + D+ G
Sbjct: 139 DGKGQYRIKKLEDANQVVK-------NHDKEESFIIEEFVKFEAEISCIGVRDREGKTYF 191
Query: 188 --LYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT--VEFLCD 243
+ + P + ++ +L + + G VEF
Sbjct: 192 YPQPF---NKHEEGILIYNYVPYA-----KLKEAEEITKRLMELLDI--VGVFTVEFFLL 241
Query: 244 ESGQFYFIEVN 254
+ G+ +N
Sbjct: 242 KDGRVL---IN 249
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 57.1 bits (139), Expect = 3e-08
Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 44/261 (16%)
Query: 56 AQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY 115
A+A+ AG+ IG SP + + D+ + A + +T E A+E +
Sbjct: 651 ARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPAN--ATVTAIEMAVEKAKEI 708
Query: 116 GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 175
G P++ +A+Y GGR M +V D+ FQ A + + + ++ F++ ++V
Sbjct: 709 GYPLVVRASYVLGGRAMEIVYDEADLRRYFQ----TAVSVSNDAPVLLDHFLDDAVEVDV 764
Query: 176 QLLGD--------------KAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTD 221
+ D +AG VH + CS+ PA L +++ M
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAG--VHSGDSACSL-----------PAYTLSQEIQDVMRQ 811
Query: 222 LAVKLAKH---VGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTV--TEEITGVDLVQSQ 276
KLA G N V+F + Y IEVN R TV + TGV L +
Sbjct: 812 QVQKLAFELQVRGLMN---VQFAVKN-NEVYLIEVNPR--AARTVPFVSKATGVPLAKVA 865
Query: 277 IRVAEGMTLPELGLTQEKISP 297
RV G +L E G+T+E I P
Sbjct: 866 ARVMAGKSLAEQGVTKEVIPP 886
Score = 36.7 bits (86), Expect = 0.044
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 59 VLDA-GIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGL 117
VL+ G+ IG + + + D+ A G+ G T EEA+ G
Sbjct: 107 VLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGF 164
Query: 118 PVIFKAAYGGGGRGMRVVRKMEDVEE 143
P I + ++ GG G + E+ EE
Sbjct: 165 PCIIRPSFTMGGSGGGIAYNREEFEE 190
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 55.8 bits (135), Expect = 3e-08
Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 39/217 (17%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQ----MGDKVAARQAAIDSGVPIVPG---TPGPITTTEEA 108
++L+ I FIGP ++ +K + A D G+ + +
Sbjct: 126 ASLLEFYRIAFIGPR---IEASVLSY-NKYLTKLYAKDLGIKTLDYVLLNEKNRANALDL 181
Query: 109 MEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE 168
M F P I K + G G+ VV++ ++ A A + + IE FI+
Sbjct: 182 MNF----NFPFIVKPSNAGSSLGVNVVKEEKE----LIYALDSA-FEYSKEVL-IEPFIQ 231
Query: 169 RPRHIEVQLLGDKAGNVVHLYERDCSVQRRH-----------QKVVEIAPAPHLDINVRN 217
+ + K E + + A L +
Sbjct: 232 GVKEYNLAGCKIKKDFCFSYIE----EPNKQEFLDFKQKYLDFSRNKAPKAS-LSNALEE 286
Query: 218 KMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
++ + KL + +F E + Y E+N
Sbjct: 287 QLKENFKKLYSDLFDGAIIRCDFFVIE-NEVYLNEIN 322
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp
superfamily, ligase,biosynthetic protein; HET: MSE ADP;
2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Length = 377
Score = 55.6 bits (135), Expect = 4e-08
Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 28/192 (14%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG- 127
+Q + D++ ++ +G +VP + + + + G P I K +GG
Sbjct: 100 QGYQAIQLLQDRLTEKETLKSAGTKVVPFIS--VKESTDIDKAIETLGYPFIVKTRFGGY 157
Query: 128 GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVH 187
G+G ++ +D++ E EK++ + + + + +
Sbjct: 158 DGKGQVLINNEKDLQ--------EGFKLIETSECVAEKYLNIKKEVSLTVTRGNNNQITF 209
Query: 188 LYERDCSVQRRHQKVVE---IAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT--VEFLC 242
+ + H+ + I PA I+ + + K+ + + + GT VEF
Sbjct: 210 -FP---LQENEHRNQILFKTIVPA---RIDKTAEAKEQVNKIIQSIHF--IGTFTVEFFI 260
Query: 243 DESGQFYFIEVN 254
D + Q Y VN
Sbjct: 261 DSNNQLY---VN 269
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 55.5 bits (133), Expect = 4e-08
Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 33/223 (14%)
Query: 56 AQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY 115
+ V + + + G + V++ D+ R+ +G+ P ++
Sbjct: 78 IELVENMKVPYFG-NKRVLRWESDRNLERKWLKKAGIR----VPEVYEDPDDI------- 125
Query: 116 GLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAA---------FGNGAMFIEKF 166
PVI K GG+G + + ED ++ + + G +
Sbjct: 126 EKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHY 185
Query: 167 IERPRHIEVQLLG---DKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLA 223
E++L+ NV + Q + ++ I +R +
Sbjct: 186 FYSKVREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDV 245
Query: 224 VKLAKHV---------GYSNAGTVEFLCDESGQFYFIEVNARL 257
++ + V G +E + +F E++AR+
Sbjct: 246 IEAGERVVKAAEELMGGLWGPFCLEGVFTPDLEFVVFEISARI 288
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga
maritima}
Length = 380
Score = 55.6 bits (135), Expect = 4e-08
Identities = 37/197 (18%), Positives = 79/197 (40%), Gaps = 41/197 (20%)
Query: 69 PSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGG- 127
PSPY ++ + DK ++ +G+P+ + E + ++G PV+ KA GG
Sbjct: 90 PSPYTLEIIQDKFVQKEFLKKNGIPVPEYKL--VKDLESDVR---EFGFPVVQKARKGGY 144
Query: 128 GGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNV-- 185
GRG+ +++ +D+E + G ++E+F+E + + V + ++ G +
Sbjct: 145 DGRGVFIIKNEKDLENAIK------------GETYLEEFVEIEKELAVMVARNEKGEIAC 192
Query: 186 ------VHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT-- 237
+ + IAPA ++ ++A + + + G
Sbjct: 193 YPVVEMYF-------DEDANICDTVIAPAR-IEEKYSKIAREIATSVVEALEG--VGIFG 242
Query: 238 VEFLCDESGQFYFIEVN 254
+E + G+ VN
Sbjct: 243 IEMFLTKQGEIL---VN 256
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase,
ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB:
3mp3_A* 3mp4_A 3mp5_A*
Length = 298
Score = 54.0 bits (131), Expect = 9e-08
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQP 536
P K ++ A+ ++ P + +H HDT G +A+ + + G VVD +V +G+ P
Sbjct: 184 PGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSV---AGLGGCP 240
Query: 537 -SMGA--------VVASLQGSDIDTGLDL 556
+ GA +V L+G I TG++L
Sbjct: 241 YAQGASGNLATEDLVYMLEGLGIHTGVNL 269
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB:
2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Length = 322
Score = 53.7 bits (130), Expect = 1e-07
Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 36/191 (18%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM 138
DK +++ +GVP+VP + E + + P K A G G+ V +
Sbjct: 118 DKDLSKRVLAQAGVPVVPWVA--VRKGEPPVV---PFDPPFFVKPANTGSSVGISRVERF 172
Query: 139 EDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD---KAGNVVHL------- 188
+D + A + A + A+ +EK + R +EV +LG+ +A V +
Sbjct: 173 QD----LEAALALA-FRYDEKAV-VEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFY 226
Query: 189 -----YERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCD 243
Y + + PAP LD + + +LA+K K +G V+F
Sbjct: 227 DYETKYTPGRA--------ELLIPAP-LDPGTQETVQELALKAYKVLGVRGMARVDFFLA 277
Query: 244 ESGQFYFIEVN 254
E G+ Y E+N
Sbjct: 278 E-GELYLNELN 287
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 53.2 bits (127), Expect = 2e-07
Identities = 48/222 (21%), Positives = 74/222 (33%), Gaps = 19/222 (8%)
Query: 62 AGIRFIGPSPYVVQQMGDK--VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPV 119
AG+ I S + DK V A+ AI + T E PV
Sbjct: 97 AGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPV 155
Query: 120 IFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLG 179
+ K + G G K+E+ +FQ +S A E FI+ I VQ +G
Sbjct: 156 VVKIGHAHSGMG---KVKVEN-HYDFQDIASV--VALTQTYATAEPFIDAKYDIRVQKIG 209
Query: 180 DKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239
N S + A I + ++ ++ G + V+
Sbjct: 210 ---NNYKAYMRTSISGNWKTN----TGSAMLEQIAMSDRYKLWVDACSEMFGGLDICAVK 262
Query: 240 FLCDESGQFYFIEVNA---RLQVEHTVTEEITGVDLVQSQIR 278
+ + G+ Y EV L EH V + DLV S++
Sbjct: 263 AVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMN 304
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI,
protein struct initiative, northeast structural genomics
consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Length = 307
Score = 53.3 bits (129), Expect = 2e-07
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQP 536
P + ++ A+ + P I +H HDT G +A+M+ + G V D + G+ P
Sbjct: 185 PAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSA---GGLGGCP 241
Query: 537 -SMGA--------VVASLQGSDIDTGLDL 556
+ G+ +V L+ DI T + L
Sbjct: 242 YAPGSSGNAATEDIVYMLEQMDIKTNVKL 270
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 53.4 bits (129), Expect = 2e-07
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPD-IPIHIHTHDTSGAGVASMIACAEAGADVVDV 524
I D G + + + A + + +H H GVA+ I E G D VD
Sbjct: 166 IYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDA 225
Query: 525 AVDSM---SGMTSQPSMGAVVASLQGSDIDTGLDLKDI 559
++ M +G + +A + + G DL +
Sbjct: 226 SLAGMGAGAGNA---PLEVFIAVAERLGWNHGTDLYTL 260
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural
genomics, PSI, protein struct initiative; 2.30A
{Brucella melitensis}
Length = 295
Score = 52.5 bits (127), Expect = 3e-07
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQP 536
P ++ A+ P + H HDT G + ++ E G V D +V G+ P
Sbjct: 183 PDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASV---GGLGGCP 239
Query: 537 -SMGA--------VVASLQGSDIDTGLDL 556
+ GA VV L +TGLDL
Sbjct: 240 FAPGAKGNVDTVAVVEMLHEMGFETGLDL 268
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase;
HET: ATP; 3.07A {}
Length = 346
Score = 52.6 bits (127), Expect = 3e-07
Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 33/215 (15%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQ----MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEF 111
Q +L+ +GI ++G +Q M DK A +G+ T T +
Sbjct: 109 QGLLELSGIPYVGCD---IQSSALCM-DKSLTYLVARSAGIATPNF----WTVTADEKIP 160
Query: 112 CLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPR 171
+ PV K A G G+ V + ED++ + A + + + IE+ +
Sbjct: 161 TDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAA-----REYDSKVL-IEEAVI-GT 213
Query: 172 HIEVQLLGDKAGNVVHL------------YERDCSVQRRHQKVVEIAPAPHLDINVRNKM 219
I ++G+ + ++ + + PA + R+ +
Sbjct: 214 EIGCAVMGNGPELITGEVDQITLSHGFFKIHQESTPESGSDNSAVTVPAD-ISTTSRSLV 272
Query: 220 TDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
D A + + +G V+ E G+ EVN
Sbjct: 273 QDTAKAVYRALGCRGLSRVDLFLTEDGKVVLNEVN 307
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein
structure initiativ midwest center for structural
genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Length = 302
Score = 52.1 bits (126), Expect = 4e-07
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 477 PRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQP 536
A + LI A+ + P + H HDT G +A++ A G V D +V +G+ P
Sbjct: 187 AGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSV---AGLGGCP 243
Query: 537 -SMGA--------VVASLQGSDIDTGLDL 556
+ GA V+ L G +I TG+D+
Sbjct: 244 YAKGATGNVASEDVLYLLNGLEIHTGVDM 272
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 50.6 bits (120), Expect = 1e-06
Identities = 38/231 (16%), Positives = 65/231 (28%), Gaps = 37/231 (16%)
Query: 62 AGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTT---EEAMEFCLKYGLP 118
G+ + S Y V K I + P+ P
Sbjct: 114 GGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSL-GPEKFPLVEQTFFPNHKPMVTAPHFP 171
Query: 119 VIFKAAYGGGGRGMRVVR---KMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEV 175
V+ K + G G V +D+ A + A E FI+ I +
Sbjct: 172 VVVKLGHAHAGMGKIKVENQLDFQDITSVVAMAKTYA---------TTEAFIDSKYDIRI 222
Query: 176 QLLGDKAGNVVHLYERDCSVQRR-----HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHV 230
Q +G Y R S+ ++E + + + ++
Sbjct: 223 QKIGSN----YKAYMR-TSISGNWKANTGSAMLE-------QVAMTERYRLWVDSCSEMF 270
Query: 231 GYSNAGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITG---VDLVQSQIR 278
G + V+ + + G+ Y IEV E DLV S++
Sbjct: 271 GGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMS 321
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus
subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Length = 364
Score = 49.5 bits (119), Expect = 4e-06
Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 39/220 (17%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQMG-----DKVAARQAAIDSGVPIVPG---TPGPITTTEE 107
Q + + + ++G + DK+ +Q G+P +P E
Sbjct: 106 QGLFEVLDVPYVGNGV-----LSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEH 160
Query: 108 AM--EFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEK 165
+ K PV K A G G+ +++E + A F + IE+
Sbjct: 161 NILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEA-----FQFDRKLV-IEQ 214
Query: 166 FIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQ-----------KVVEIAPAPHLDIN 214
+ R IEV +LG+ E V + KV PA LD +
Sbjct: 215 GVN-AREIEVAVLGNDYPEATWPGE----VVKDVAFYDYKSKYKDGKVQLQIPAD-LDED 268
Query: 215 VRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
V+ + ++A++ K S +F E Q Y E N
Sbjct: 269 VQLTLRNMALEAFKATDCSGLVRADFFVTEDNQIYINETN 308
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella
burnetii}
Length = 372
Score = 48.4 bits (116), Expect = 8e-06
Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 28/214 (13%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQ----MGDKVAARQAAIDSGVPIVPG---TPGPITTTEEA 108
Q +L+ + ++G + VQ M +K + G+P+V +P T
Sbjct: 117 QGLLELLNLPYVGAN---VQSSAVCM-EKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQ 172
Query: 109 MEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE 168
+ KA G ++ E F +A E + + M +E I
Sbjct: 173 RLLDRWGTSELFVKAVSLGSSVA---TLPVKTETE-FTKAVKEV-FRYDDRLM-VEPRIR 226
Query: 169 RPRHIEVQLLGDKAGNVVHLYERDCSVQ--------RRHQKVVEIAPAPHLDINVRNKMT 220
R IE +LG+ A E L +V ++
Sbjct: 227 -GREIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVD-LSESVTKQIQ 284
Query: 221 DLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
+A+ K V S V+F + + E+N
Sbjct: 285 QIAIDAFKMVHCSGMARVDFFVTPNNKVLVNEIN 318
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas
oryzae PV} PDB: 3r5f_A* 3rfc_A*
Length = 386
Score = 48.0 bits (115), Expect = 1e-05
Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 34/194 (17%)
Query: 79 DKVAARQAAIDSGVPIVPG---TPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVV 135
DK A++ D+ + + P + + GLP+ K A G G+ V
Sbjct: 159 DKDMAKRVLRDARLAVAPFVCFDRHTAAH-ADVDTLIAQLGLPLFVKPANQGSSVGVSQV 217
Query: 136 RKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD---KAGNVVHL---- 188
R + A A+ + + +E + R IE +LG+ A +
Sbjct: 218 RTADAFAAALALA-----LAYDHKVL-VEAAVA-GREIECAVLGNAVPHASVCGEVVVHD 270
Query: 189 --------YERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240
Y + + + PA +D + ++ +AV+ + +G + V+
Sbjct: 271 AFYSYATKYISEHGAEI-------VIPAD-IDAQTQQRIQQIAVQAYQALGCAGMARVDV 322
Query: 241 LCDESGQFYFIEVN 254
G+ EVN
Sbjct: 323 FLCADGRIVINEVN 336
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 43.8 bits (104), Expect = 1e-05
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 925 VMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
++ + V VGD + L+ L K M V A V GVVK +
Sbjct: 18 IIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV 58
Score = 39.5 bits (93), Expect = 3e-04
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
KA VP A + G V E++VKVGDK+ +G +VV+ A
Sbjct: 42 KATMDVP----AEVAGVVKEVKVKVGDKISEGGLIVVVEA 77
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 43.4 bits (103), Expect = 1e-05
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 925 VMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
V+E+ VK GD +E LVVL + K M V +P GVVKS+
Sbjct: 15 VIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSV 55
Score = 39.9 bits (94), Expect = 2e-04
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
KA+ VP +P G V + VK+GDK+++G A++ L
Sbjct: 39 KASMEVP----SPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 43.5 bits (103), Expect = 2e-05
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
+V P V E+ VKVGDKV +L+ + K M V AP GVVK +
Sbjct: 4 EVNVPDIVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 53
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
KA+ VP AP G V E++V VGDKV+ G+ +++
Sbjct: 37 KASMEVP----APFAGVVKELKVNVGDKVKTGSLIMIFEV 72
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP
binding protein, csgid, A binding, cell shape; HET: ADP;
2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Length = 364
Score = 47.2 bits (113), Expect = 2e-05
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 36/195 (18%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPIT----TTEEAMEFCLKYGLPVIFKAAYGGGGRGMRV 134
DK A++ D+G+ I P +T E + GLP+ K A G G
Sbjct: 140 DKDVAKRLLRDAGLNIAPFI--TLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVG--- 194
Query: 135 VRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHL------ 188
V K+ + + +Q+A + A F + + +E+ I+ R IE +LG+
Sbjct: 195 VSKVANEAQ-YQQAVALA-FEFDHKVV-VEQGIK-GREIECAVLGNDNPQASTCGEIVLN 250
Query: 189 ---------YERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVE 239
Y D Q + PA + V +K+ +A++ + +G + V+
Sbjct: 251 SEFYAYDTKYIDDNGAQ-------VVVPAQ-IPSEVNDKIRAIAIQAYQTLGCAGMARVD 302
Query: 240 FLCDESGQFYFIEVN 254
+ E+N
Sbjct: 303 VFLTADNEVVINEIN 317
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 42.6 bits (101), Expect = 3e-05
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 925 VMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
V E+ VKVGDKV +L+ + K M V AP GVVK +
Sbjct: 17 VTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKEL 57
Score = 39.5 bits (93), Expect = 3e-04
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
KA+ VP AP G V E++V VGDKV+ G+ +++
Sbjct: 41 KASMEVP----APFAGVVKELKVNVGDKVKTGSLIMIFEV 76
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel,
licmsn, substrate specificity, acyltransferase,
amino-acid biosynthesis; 2.00A {Leptospira interrogans}
PDB: 3blf_A 3bli_A*
Length = 337
Score = 44.8 bits (107), Expect = 1e-04
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525
I D G+L P + ++ +K+PDI H H+ VA+ + AG + +
Sbjct: 186 IFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHAS 245
Query: 526 VDSM---SGMTSQPSMGAVVASLQG-SDIDTGLDLKDISAYS 563
++ + +G T + A+V ++ S+ T ++ I+ S
Sbjct: 246 INGLGERAGNT---PLEALVTTIHDKSNSKTNINEIAITEAS 284
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A*
2r7m_A* 2r7n_A*
Length = 361
Score = 44.6 bits (105), Expect = 1e-04
Identities = 38/261 (14%), Positives = 84/261 (32%), Gaps = 36/261 (13%)
Query: 21 VEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDK 80
V+ + +I K ++++I +G + G + +++ ++
Sbjct: 67 VDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNVENSFLVPMFG-NRRILRWESER 125
Query: 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMED 140
+ ++G+ + P + E+ VI K GGRG + E+
Sbjct: 126 SLEGKLLREAGLRV----PKKYESPEDI-------DGTVIVKFPGARGGRGYFIASSTEE 174
Query: 141 VEENFQRASSEAKAA-----------FGNGAMFIEKFIERPRHIEVQLLGDKAG---NVV 186
+ + + G F + P EV+LLG N+
Sbjct: 175 FYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNID 234
Query: 187 HLYERDCSVQRRHQKVVEIAPAPHLDINVR----NKMTDLAVKLAKHV------GYSNAG 236
L Q ++ + +R ++ ++ KL G
Sbjct: 235 GLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPF 294
Query: 237 TVEFLCDESGQFYFIEVNARL 257
++ LC+E+ + E++AR+
Sbjct: 295 CLQSLCNENLELVVFEMSARV 315
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 39.9 bits (94), Expect = 2e-04
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 919 APMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
P P + + ++VG KV G L ++ AMKM ++A G VK+I
Sbjct: 18 TPSPDA--KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAI 62
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 43.7 bits (103), Expect = 4e-04
Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 77 MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY-GLPVIFKAAYGGGGRGMRVV 135
M +KV ++ + P G T +EA+ + + P++ K G G+ +
Sbjct: 482 MANKVVTKKILDEKHFPTPFG--DEFTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIF 539
Query: 136 RKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE 168
+ ++ +++A A + + +E++IE
Sbjct: 540 KTSANLAS-YEKAIDIAF-TEDSAIL-VEEYIE 569
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA
transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP:
c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A*
3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A*
3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A*
3tyd_A* ...
Length = 297
Score = 42.5 bits (101), Expect = 4e-04
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAV 541
+I A+ K +PI I DT A VA EAGA ++ D+ G ++P + V
Sbjct: 106 MIQAVS-KEVKLPISI---DTYKAEVAK--QAIEAGAHIINDI-----WGAKAEPKIAEV 154
Query: 542 VASLQ 546
A
Sbjct: 155 AAHYD 159
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate
biosynthesis, antibiotic resistance; 2.64A
{Mycobacterium tuberculosis}
Length = 318
Score = 42.6 bits (101), Expect = 4e-04
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAV 541
I +R +PD I + DT A VA A AGAD++ D G P+M V
Sbjct: 107 FIEWLRGAYPDQLISV---DTWRAQVAK--AACAAGADLINDT-----WGGV-DPAMPEV 155
Query: 542 VASLQ 546
A
Sbjct: 156 AAEFG 160
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 43.0 bits (102), Expect = 4e-04
Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 41/220 (18%)
Query: 57 QAVLD-AGIRFIGPSPYVVQQ----MGDKVAARQAAID-SGVPIVPGTPGPITTTEEAME 110
Q L+ + ++G + + M DK+ Q + +P V E +E
Sbjct: 138 QGFLEVLKMPYVGTN---ILSSSVAM-DKITTNQVLESATTIPQVAYV---ALIEGEPLE 190
Query: 111 FCL-----KYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEK 165
L K PV K A G G+ D ++A + A + + + IE+
Sbjct: 191 SKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTD----LKQAIALA-LKYDSRVL-IEQ 244
Query: 166 FIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQ-----------KVVEIAPAPHLDIN 214
++ R IEV +LG+ E + + K+ PA +D
Sbjct: 245 GVD-AREIEVGILGNTDVKTTLPGE----IVKDVAFYDYEAKYIDNKITMAIPAE-IDPV 298
Query: 215 VRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN 254
+ KM D A + +G +F E G+ Y E+N
Sbjct: 299 IVEKMRDYAATAFRTLGCCGLSRCDFFLTEDGKVYLNELN 338
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase,
folate biosynthesis; 1.8A {Streptococcus pneumoniae}
PDB: 2veg_A*
Length = 314
Score = 42.6 bits (101), Expect = 5e-04
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 484 IGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAVV 542
I AIR K D+ I I DT + VA A AGAD+V D+ +G+ M VV
Sbjct: 77 IKAIR-KESDVLISI---DTWKSQVAE--AALAAGADLVNDI-----TGLMGDEKMPHVV 125
Query: 543 ASLQ 546
A +
Sbjct: 126 AEAR 129
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex,
amino-acid BIOS lysine biosynthesis, transferase; HET:
AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A*
3a9i_A*
Length = 382
Score = 41.8 bits (99), Expect = 9e-04
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPD-IPIHIHTHDTSGAGVASMIACAEAGADVVDV 524
+ D G+ PR L+ +R + I H H+ +G +A+ EAGA VD
Sbjct: 161 VGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDT 220
Query: 525 AVDSM---SGMTSQPSMGAVVASL---QGSDIDTGLDLKDISAYS 563
+ + +G+T +G +A + Q + L+ +
Sbjct: 221 TILGIGERNGIT---PLGGFLARMYTLQPEYVRRKYKLEMLPELD 262
>1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex
with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus
aureus} SCOP: c.1.21.1 PDB: 1ad4_A*
Length = 266
Score = 40.9 bits (97), Expect = 0.001
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 484 IGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAVV 542
+ AI D+ I + DT + VA AC + G D++ D M VV
Sbjct: 70 VEAIVGF--DVKISV---DTFRSEVAE--ACLKLGVDIINDQ-----WAGLYDHRMFQVV 117
Query: 543 ASLQ 546
A
Sbjct: 118 AKYD 121
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 41.5 bits (98), Expect = 0.001
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
G +++ VK GD+V + L + K + + +PV+G V I
Sbjct: 17 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEI 59
Score = 35.7 bits (83), Expect = 0.093
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
KA +P +P+ G V+EI V G G L+ L A
Sbjct: 43 KAVVEIP----SPVKGKVLEILVPEGTVATVGQTLITLDA 78
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase;
HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP:
c.1.21.1
Length = 280
Score = 40.6 bits (96), Expect = 0.002
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 484 IGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAVV 542
+ + + I + I DT A VA A + GA +V DV SG + P+MG ++
Sbjct: 73 VKELAAQ--GITVSI---DTMRADVAR--AALQNGAQMVNDV-----SGGRADPAMGPLL 120
Query: 543 ASLQ 546
A
Sbjct: 121 AEAD 124
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein,
transferase, claisen condensatio acid biosynthesis;
2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A*
3mi3_A*
Length = 423
Score = 41.1 bits (97), Expect = 0.002
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVA 525
+ D G PR LI +R I H H+ +G +A+ EAGA +D +
Sbjct: 197 VGIADTVGCATPRQVYDLIRTLRG-VVSCDIECHFHNDTGMAIANAYCALEAGATHIDTS 255
Query: 526 VDSM---SGMTSQPSMGAVVASLQGSD---IDTGLDLKDISAYS 563
+ + +G+T +GA++A + +D I L +
Sbjct: 256 ILGIGERNGIT---PLGALLARMYVTDREYITHKYKLNQLRELE 296
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase
RV2981C, structural genomics, TB structural GENO
consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Length = 373
Score = 40.7 bits (96), Expect = 0.002
Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 30/194 (15%)
Query: 79 DKVAARQAAIDSGVPIVPG---TPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVV 135
DK ++ G+P+ P T + E + GLPV K A GG G+ V
Sbjct: 151 DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECE---RLGLPVFVKPARGGSSIGVSRV 207
Query: 136 RKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLY----ER 191
+ + RA + +E I R +E +L G +
Sbjct: 208 SSWDQLPAAVARA-----RRHDPKVI-VEAAIS-GRELECGVLEMPDGTLEASTLGEIRV 260
Query: 192 DCSVQRRHQ-----------KVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEF 240
R PA +D V + LA++ + V+F
Sbjct: 261 AGVRGREDSFYDFATKYLDDAAELDVPAK-VDDQVAEAIRQLAIRAFAAIDCRGLARVDF 319
Query: 241 LCDESGQFYFIEVN 254
+ G E+N
Sbjct: 320 FLTDDGP-VINEIN 332
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 39.8 bits (92), Expect = 0.004
Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 26/259 (10%)
Query: 31 IRVAKENDVDAIHPGYG-FLSERSDFAQAVL----DAGIRFIGPSPYVVQQMGDK--VAA 83
++V + D + F R+ ++++ AGI + S + V DK V A
Sbjct: 173 VKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFA 231
Query: 84 RQAAIDSGVPIVPGTP-GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVE 142
+ + + P T E PV+ K + G G V D +
Sbjct: 232 QMVRLHKKLG-TEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQ 290
Query: 143 ENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKV 202
+ + E FI+ + VQ +G N S +
Sbjct: 291 DIASVVALT------KTYATAEPFIDAKYDVRVQKIG---QNYKAYMRTSVSGNWKTN-- 339
Query: 203 VEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVN---ARLQV 259
A I + ++ ++ G + VE L + G+ + IEV L
Sbjct: 340 --TGSAMLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKDGRDHIIEVVGSSMPLIG 397
Query: 260 EHTVTEEITGVDLVQSQIR 278
+H ++ V+LV +++
Sbjct: 398 DHQDEDKQLIVELVVNKMT 416
>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis,
transferase, ligase, multifunctional enzyme; HET: PMM;
2.3A {Saccharomyces cerevisiae}
Length = 545
Score = 39.4 bits (92), Expect = 0.006
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 483 LIGAIREK----HPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPS 537
LI AIRE + + I DT + VA + G D++ D+ SG +
Sbjct: 297 LIKAIRESTELPQDKVILSI---DTYRSNVAK--EAIKVGVDIINDI-----SGGLFDSN 346
Query: 538 MGAVVASLQG 547
M AV+A
Sbjct: 347 MFAVIAENPE 356
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance,
transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A
{Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A
3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Length = 282
Score = 38.2 bits (90), Expect = 0.011
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 484 IGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAVV 542
+ AI + ++ I + DTS V + A+ GA ++ D+ ++ +P
Sbjct: 82 VEAIA-QRFEVWISV---DTSKPEV--IRESAKVGAHIINDI-----RSLS-EPGALEAA 129
Query: 543 ASLQ 546
A
Sbjct: 130 AETG 133
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 38.0 bits (88), Expect = 0.017
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 77 MGDKVAARQAAIDSGVPIVPGTPGPITTTEEAME-FCLKYGLPVIFKAAYGGGGRGMRVV 135
M +KV ++ +G + T+ E+A+ + L V+ K G G+ +
Sbjct: 487 MENKVVTKKVLQKAGFNVPQSVE--FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIF 544
Query: 136 RKMEDVEENFQRASSEAKAAFGNGAMFIEKFIE 168
++ E+F +A A M +E ++
Sbjct: 545 QQGVQNREDFAKALEIAF-REDKEVM-VEDYLV 575
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic
groups, and carriers, transferase; HET: PT1; 1.90A
{Coxiella burnetii}
Length = 314
Score = 37.2 bits (87), Expect = 0.020
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 13/65 (20%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAV 541
+I AI+ K I + DTS V GAD++ D + ++
Sbjct: 96 VIDAIK-KRFPQLISV---DTSRPRVMR--EAVNTGADMINDQ-----RALQLDDAL-TT 143
Query: 542 VASLQ 546
V++L+
Sbjct: 144 VSALK 148
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis;
HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Length = 294
Score = 36.4 bits (85), Expect = 0.039
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAV 541
L+ A+R ++P+ I DT V M A AGAD++ D+ G QP
Sbjct: 89 LVEALRPL--NVPLSI---DTYKPAV--MRAALAAGADLINDI-----WGFR-QPGAIDA 135
Query: 542 VASLQ 546
V
Sbjct: 136 VRDGN 140
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A
{Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Length = 294
Score = 36.4 bits (85), Expect = 0.040
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 484 IGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV-DVAVDSMSGMTSQPSMGAVV 542
+ A+ +P+ + DT V + GA ++ DV +G+ M A+
Sbjct: 96 LEAVLSL--GVPVSV---DTRKPEV--AEEALKLGAHLLNDV-----TGLR-DERMVALA 142
Query: 543 ASLQ 546
A
Sbjct: 143 ARHG 146
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 35.5 bits (82), Expect = 0.095
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 498 IHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLK 557
+H H+ G VA+ AGAD ++ + T + + +L +D +D
Sbjct: 284 LHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFS 343
Query: 558 DISAYSAYWEQTRQL 572
+I E QL
Sbjct: 344 NIDEIRRTVEYCNQL 358
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 35.5 bits (82), Expect = 0.099
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
+V P+ G ++ + ++GD+V+ G L + +
Sbjct: 59 KVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 35.2 bits (82), Expect = 0.10
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 91 GVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGR----GMRVVRKMEDVEE 143
GVP+ PG T EEA ++G V+ KA GGR G+++ ++ E
Sbjct: 16 GVPVPPG--KVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYE 70
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 31.8 bits (73), Expect = 0.14
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
G ++ VK GD VEK LV + K+ + + +PV+G + I
Sbjct: 16 GEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKI 58
Score = 28.7 bits (65), Expect = 1.7
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
K +P +P+ G +++I + G V G+ L+ +
Sbjct: 42 KVTVKIP----SPVRGKIVKILYREGQVVPVGSTLLQI 75
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 34.6 bits (80), Expect = 0.17
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
A + V VGA + G + + V +GDKV+K L V+
Sbjct: 27 DALRKV--DVGAQVSGQLKTLSVAIGDKVKKDQLLGVI 62
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 33.6 bits (77), Expect = 0.23
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
G++++ K G+ V G AL + K + + A G++ I
Sbjct: 18 GNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKI 60
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 34.0 bits (78), Expect = 0.25
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 908 KAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
++ +V VGA + G + ++ VK+G +V+KG L +
Sbjct: 28 ESINTV--DVGAQVSGKITKLYVKLGQQVKKGDLLAEI 63
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM
barrel, catalytic domain, dimer, leucine biosynthesis,
ketoisovalerate; 1.95A {Neisseria meningitidis}
Length = 370
Score = 33.7 bits (78), Expect = 0.33
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPDI---PIHIHTHDTSGAGVASMIACAEAGADVV 522
IN D G P + + K P+ H H+ G VA+ +A + GA V
Sbjct: 174 INIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV 233
Query: 523 DVAV 526
+ V
Sbjct: 234 ECTV 237
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 33.8 bits (78), Expect = 0.33
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 434 TVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLINTFDMAGLLKPRAAKLLIGAIREKHPD 493
V + + A + V P ++ T P A + IRE+ D
Sbjct: 38 VVFASTQNAEEA-HAYDKTLDYEVIRWPRSVMLPT--------PTTAHAMAEIIREREID 88
Query: 494 IPIHIHTHDTSGAGVASMIACAEAGADVV 522
+ + + + A + V+
Sbjct: 89 N---VWFGAAAPLALMAGTAKQAGASKVI 114
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 33.0 bits (76), Expect = 0.49
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 456 PVPEIPLGKLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACA 515
V + + + +D+A A + + ++ DI +H H + + +A
Sbjct: 71 TVNQYSVFQYP-PYDLA------LASKMAEVAQRENLDI---LHVHYAIPHAICAYLAKQ 120
Query: 516 EAGADV 521
G +
Sbjct: 121 MIGERI 126
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 29.9 bits (68), Expect = 0.74
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 921 MPGSVMEIRV-----KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDA 967
P S+ + V K G+ V++ +V + K+ M V A GV+ I
Sbjct: 9 FPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVK 60
Score = 27.6 bits (62), Expect = 5.2
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
V A G + EI GD V G L L+
Sbjct: 47 VLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 29.5 bits (67), Expect = 0.92
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 921 MPGSVMEIRV-----KVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDA 967
+P SV + V K GD V + LV + K+ + V A G++ ++
Sbjct: 10 LPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLE 61
Score = 28.0 bits (63), Expect = 3.4
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
V A G + + G V L L
Sbjct: 48 VPASADGILDAVLEDEGTTVTSRQILGRLRE 78
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown
function, amino-acid biosynthesis; 2.10A {Listeria
monocytogenes str}
Length = 293
Score = 32.1 bits (74), Expect = 0.93
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPDI---PIHIHTHDTSGAGVASMIACAEAGADVV 522
IN D G P L +R + H HD G A+ +A E GA V
Sbjct: 167 INIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRV 226
Query: 523 DVAV 526
+ +
Sbjct: 227 EGTI 230
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM
barrel fold, structural genomics, joint center for struc
genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3}
PDB: 3fa5_A
Length = 284
Score = 31.9 bits (72), Expect = 1.0
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 473 GLLKPRAAKLLI-----GAI--REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
G+ P +I G++ + +P +PI T V S EAGA +
Sbjct: 1 GMDTPANKPCIICVAITGSVPTKADNPAVPI------TVSEQVESTQEAFEAGAAIA 51
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 31.4 bits (71), Expect = 1.2
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 463 GKLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
G N+ ++ +IG I++ +P I A + + A V
Sbjct: 52 GIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFI------TATMTEVDQLAALNIAV- 104
Query: 523 DVAVDS 528
+A+D
Sbjct: 105 -IAMDC 109
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 31.7 bits (71), Expect = 1.3
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 13/121 (10%)
Query: 846 YSLENWGGATFDVALRFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHI 905
++E G L +K + G
Sbjct: 197 TAVEEMGKVLVTTELGGGGMSTARSNAIAKKGL--------RNVLIHFGILQGEMQIDPS 248
Query: 906 HPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAM----KMEMVVQAPVQGV 961
+ + G + EI + +G+ V++G + + + + + +A GV
Sbjct: 249 VTLDMPDGDCYLFSEHDG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGV 307
Query: 962 V 962
+
Sbjct: 308 L 308
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel,
structural genomics, protein structure initiati 2; 2.81A
{Galdieria sulphuraria}
Length = 258
Score = 31.5 bits (72), Expect = 1.3
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 11 SYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPS 70
+YL P + + A D + + + +L++ + G+
Sbjct: 167 TYLFNYMGQP-----TPLDFVEQACYGDANGVSMLFHYLTKE--QVCTAHEKGLSVT--- 216
Query: 71 PYVVQQMGDKVAARQAAIDSGV 92
++ D + ++ V
Sbjct: 217 VWMPWIFDDSEEDWKKCLELQV 238
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
+V E VK GD V + ++ + + K + + + GV+K +
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein,
structural genomics, center for structural genomics,
JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Length = 275
Score = 31.5 bits (71), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 485 GAI--REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
G++ ++ +P +PI T V S A EAGA +V
Sbjct: 14 GSLPRKKDNPAVPI------TVSEQVESTQAAFEAGATLV 47
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A
{Candidatus cloacamonas acidaminovoransorganism_taxid}
PDB: 2y7d_A 2y7f_A* 2y7g_A
Length = 282
Score = 31.5 bits (71), Expect = 1.4
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 485 GAI--REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
GA R P++PI T AC EAGA V+
Sbjct: 18 GAETTRADQPNLPI------TPEEQAKEAKACFEAGARVI 51
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription
regulator-Pro binding complex, acetylation, cytoplasm;
1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C
3kjl_A 3m99_C 3mhh_B 3kik_A
Length = 96
Score = 29.5 bits (66), Expect = 1.5
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 13/76 (17%)
Query: 863 LHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAPMP 922
L + W ++++ + N TN+ + PKA + V +
Sbjct: 33 LLQEGWV--DKVKDLTKSE--------MNINESTNFTQILSTVEPKALEMVSDSTRETV- 81
Query: 923 GSVMEIRVKVGDKVEK 938
+ +IR + + V+
Sbjct: 82 --LKQIREFLEEIVDT 95
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 31.6 bits (72), Expect = 1.7
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 464 KLINTFDMAGLLK----PRAA-----KLL--IGAIREKHPDIPIHIHTHDT 503
+LI + G PR A +LL ++ +HPD ++ H +
Sbjct: 188 RLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISEN 238
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding
rossmann fold, L-MYO-inositol 1-phosphate syntha
isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus}
PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Length = 392
Score = 31.3 bits (70), Expect = 2.0
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 85 QAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVI 120
AA+ G+P TP P + E K G+P
Sbjct: 187 YAALKLGLPYANFTPSPGSAIPALKELAEKKGVPHA 222
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 2.3
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 23/87 (26%)
Query: 81 VAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMED 140
V+ +A I SG IT E + Y G G G+ +R M
Sbjct: 1018 VSVVEAFIASG----------ITDPYEMYK----YVHVSEVGNCSGSGMGGVSALRGMFK 1063
Query: 141 VEENFQRASSEAKAAFGNGAMFIEKFI 167
+ ++ + E FI
Sbjct: 1064 DRFKDEPVQND---------ILQESFI 1081
Score = 31.4 bits (71), Expect = 2.4
Identities = 12/101 (11%), Positives = 26/101 (25%), Gaps = 7/101 (6%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTS------GAGVASMIACAEAGADVVD 523
++ + R I++ + + + A+
Sbjct: 1243 NLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEAESQL 1302
Query: 524 VAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSA 564
A G +A L+G+ GL + D+ S
Sbjct: 1303 RAAQQQWGND-FYKRDPRIAPLRGALATYGLTIDDLGVASF 1342
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural
genomics, joint center for structural genomics; HET:
MSE; 2.20A {Methanococcus maripaludis}
Length = 169
Score = 30.1 bits (67), Expect = 2.4
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 898 YPDNEMHIHPKAAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEM-VVQA 956
YPD + KA + + P G + + G +V KG L L + K ++ V +
Sbjct: 87 YPDKHTLTYLKAGTKL---ISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNS 143
Query: 957 PVQGVVKSID 966
PV G V ++
Sbjct: 144 PVSGTVIFMN 153
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural
genomics, protein structure initiative; 2.78A {Cytophaga
hutchinsonii atcc 33406}
Length = 325
Score = 30.5 bits (70), Expect = 2.9
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPDI---PIHIHTHDTSGAGVASMIACAEAGADVV 522
+N D G + P I + + +I + H H+ G A+ +A + GA V
Sbjct: 168 VNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227
Query: 523 DVAV 526
+ +
Sbjct: 228 ECTI 231
>3lot_A Uncharacterized protein; protein of unknown function, structural
genomics, joint CENT structural genomics, JCSG; HET:
MSE; 1.89A {Archaeoglobus fulgidus}
Length = 314
Score = 30.5 bits (68), Expect = 3.3
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 485 GAI--REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
GAI P +P+ T V + AEAGA +V
Sbjct: 16 GAIHTPSMSPYLPV------TPDQIVEEAVKAAEAGAGMV 49
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; DUF849 family protein, TIM
beta/alpha-barrel fold, structura genomics; HET: MSE;
1.72A {Ralstonia eutropha}
Length = 316
Score = 30.1 bits (67), Expect = 3.4
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 488 REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
KHP +PI T + + A+AGA V
Sbjct: 37 NPKHPSMPI------TPAQIADACVEAAKAGASVA 65
>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural
genomics, joint center for structural genomics; HET:
MSE; 1.75A {Burkholderia xenovorans LB400}
Length = 311
Score = 30.1 bits (67), Expect = 3.9
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 488 REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
P +P+ T + I AEAGA V+
Sbjct: 21 PSMSPYLPV------TPDEVAQASIGAAEAGAAVI 49
>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification,
transferase-transfera inhibitor complex; HET: GGL CYW;
2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*
Length = 209
Score = 29.5 bits (67), Expect = 4.1
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 495 PIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQP 536
P+ ++ S A EAG+D V ++ + P
Sbjct: 2 PMKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSP 43
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Length = 311
Score = 30.1 bits (67), Expect = 4.2
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 488 REKHPDIPIHIHTHDTSGAGVASMIACAEAGADVV 522
P +PI T V +A AEAGA ++
Sbjct: 21 PTMSPYLPI------TPEEIVKEGVAAAEAGAAML 49
>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea
mays} SCOP: a.45.1.1 c.47.1.5
Length = 216
Score = 29.5 bits (67), Expect = 4.2
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 495 PIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTSQP 536
P+ ++ S V E G D V VD +G QP
Sbjct: 2 PLKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQP 43
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester
phosphodiesterase, T. tengcongensis; 1.91A
{Thermoanaerobacter tengcongensis}
Length = 252
Score = 29.5 bits (67), Expect = 5.2
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 26 NIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQ 85
+ E +A + ++HP Y + + + G++ P+ V D+ +
Sbjct: 176 GLVEPWHMALRMEAYSLHPFYFNIIP--ELVEGCKKNGVKLF---PWTV----DRKEDME 226
Query: 86 AAIDSGV 92
I +GV
Sbjct: 227 RMIKAGV 233
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family,
cofactor-binding DO cysteine biosynthesis; 2.80A
{Escherichia coli K12} SCOP: c.94.1.1
Length = 228
Score = 29.2 bits (66), Expect = 5.4
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAV 526
+I A RE P++ + + +A+++ D+ +
Sbjct: 32 VIKAFRELFPEVRLELIQGTPQ--EIATLLQ-----NGEADIGI 68
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 29.8 bits (67), Expect = 5.4
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 462 LGKLINTFDMAGLLKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADV 521
++ D G L P A+ + PD+ + HD++ A +A+ A +
Sbjct: 198 FAPIVRAGDTVGALLPAIAERTGLS-----PDVQVLAGLHDSNAALLAARGFAEIADNEA 252
Query: 522 V 522
Sbjct: 253 T 253
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 29.8 bits (67), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 916 QVGAPMPGSVMEIRVK-VGDKVEKGAALVVL 945
V A G + ++ VGDKV+KG L+ L
Sbjct: 123 IVQARAAGFIDKVYPLTVGDKVQKGTPLLDL 153
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial
enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana
tabacum} SCOP: c.1.22.1
Length = 353
Score = 29.4 bits (67), Expect = 6.2
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 469 FDM-AGLLKPRA--------AKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGA 519
FD A L P K ++ +++ HP++P+ SG+G + G
Sbjct: 213 FDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPL---ILYASGSGGL-LERLPLTGV 268
Query: 520 DVV 522
DVV
Sbjct: 269 DVV 271
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities,
enzyme evolution, hyperthermophilic, lactonase,
hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus
solfataricus} PDB: 2vc5_A*
Length = 314
Score = 29.3 bits (65), Expect = 6.4
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 493 DIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527
+PI H++ + G+ E G D + +
Sbjct: 164 KVPIITHSNAHNNTGLEQQRILTEEGVDPGKILIG 198
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD; 2.30A {Caenorhabditis
elegans} SCOP: c.2.1.3 d.81.1.3
Length = 537
Score = 29.8 bits (66), Expect = 6.4
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 14 VGKGLPPVEAYLNIPEIIRVAK-ENDVDAIHPGYGFLSER-SDFAQAVLDAGIRFIGPSP 71
V G +E +I IR K E++++ + + +ER +D Q + +
Sbjct: 214 VIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLNATADEIMESIR 273
Query: 72 YVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPV----------IF 121
++ A+I G + G+P T +E ++ + V F
Sbjct: 274 VNEDEVSPSNIFAVASILEGAHYINGSPQN-TLVPGLIELAERHKVFVGGDDFKSGQTKF 332
Query: 122 KAAYGGG--GRGMRVVR 136
K+A+ GM+
Sbjct: 333 KSAFVDFLVSSGMKPES 349
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 28.2 bits (63), Expect = 7.5
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 909 AAKSVPGQVGAPMP--------GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQG 960
S P + +P G+V KVG+K+ +G L + K + + +G
Sbjct: 20 QGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEG 79
Query: 961 VVKSI 965
+ I
Sbjct: 80 YLAKI 84
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2,
protein structure initiative, midwest center for STR
genomics, hydrolase; 2.60A {Shigella flexneri}
Length = 247
Score = 29.1 bits (66), Expect = 7.8
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 27 IPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIR 65
+ + +IH + L + + DAG+R
Sbjct: 173 RDDWRELTARLGCVSIHLNHKLLDK--ARVMQLKDAGLR 209
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 28.8 bits (64), Expect = 8.1
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 475 LKPRAAKLLIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMTS 534
+K +IG ++ + + I A + E+ +V +A+D+
Sbjct: 51 IKETVDLPVIGIVKRDYDHSDVFI------TATSKEVDELIESQCEV--IALDATLQQRP 102
Query: 535 QPSMGAVVA 543
+ ++ +V+
Sbjct: 103 KETLDELVS 111
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; HET: NAD; 1.95A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3
Length = 367
Score = 28.9 bits (64), Expect = 8.9
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 50 SERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAM 109
+E D QA+ +A + + V + DK A Q AID+GV V P I +
Sbjct: 125 AEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYA-QCAIDAGVAFVNALPVFIASDPVWA 183
Query: 110 EFCLKYGLPVI 120
+ +P++
Sbjct: 184 KKFTDARVPIV 194
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 28.9 bits (64), Expect = 9.0
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 97 GTPGPITTTEEAMEFCLKYGLPVIFKAA 124
G P + E +G+ V + A
Sbjct: 189 GQPVSMANMRAVRELTEAHGIKVFYDAT 216
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 1.89A {Parabacteroides distasonis}
Length = 238
Score = 28.7 bits (65), Expect = 9.3
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 868 WERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQV 917
+ +E + P L + + + H K +S P V
Sbjct: 140 MDACKEFIRLCPKSEVSYLNGELSPMELKELGFTGLDYHYKVLQSHPDWV 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 29.3 bits (65), Expect = 9.3
Identities = 14/109 (12%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 770 KVGEEFEVKIQPPQGFRQILKSKGPEAFAKAVRQNKSLLLMDTTFRDAHQSLLATRVRSH 829
+ E+ + + P GF G K + + L+ + T + ++ + + +
Sbjct: 210 QREEQCILYLGPRYGF-------GEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTK 262
Query: 830 DLLKISPFVAHKFNNLYSLENWGGAT--FDVALRFLHECPWERLEEMRK 876
+ L+ + V K + + A + + +L +E +
Sbjct: 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel,
metallo-enzyme, STRU function project, S2F, unknown
function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB:
1m68_A 1pb0_A
Length = 245
Score = 28.6 bits (64), Expect = 9.4
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 17 GLPPVEAY-LNIPEIIRVAKENDVDAI----HPGYGFLSERSD----FAQAVLDAGIRF- 66
P Y +++ + A ++ V A+ D A AV DAG
Sbjct: 130 SHPGNPKYEIDVKAVAEAAAKHQV-ALEINNSSFLHSRKGSEDNCREVAAAVRDAGGWVA 188
Query: 67 IGPSPYVVQQMGDKVAARQAAIDSGVP 93
+G + MG+ + P
Sbjct: 189 LGSDSHTAFTMGEFEECLKILDAVDFP 215
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod
phosphodiesterase, HB8; 1.30A {Thermus thermophilus}
SCOP: c.1.18.3 PDB: 1v8e_A
Length = 224
Score = 28.7 bits (65), Expect = 9.6
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 23 AYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIR 65
+L + + V+A+HP + ++E G+
Sbjct: 148 GFLMAEDHSALLPCLGVEAVHPHHALVTEE--AVAGWRKRGLF 188
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX;
1.60A {Listeria monocytogenes serotype 4b
strorganism_taxid}
Length = 330
Score = 29.0 bits (64), Expect = 9.6
Identities = 24/175 (13%), Positives = 48/175 (27%), Gaps = 22/175 (12%)
Query: 369 AKMNRALREFRVRGVKT-----------NIPFLLNVLTNQKFVNGAVDTYFIDENPQLFT 417
K +++F G KT + + + + + + F
Sbjct: 46 EKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQI-SKETGIQIVGTAGFNKSFLWDGK 104
Query: 418 LQPTKNRAQKLLNYLGTVLVNGPSTPLATPLLPAEVTPPVPEIP----LGKLINTFDMAG 473
++P + N + L + EV + P K ++M
Sbjct: 105 IKPELKPIIGDFETYYEWIENTTTDKLT-EFVVNEVENGLEGTPYKAGQVKFGTGYNMI- 162
Query: 474 LLKPRAAKLLIGAIRE-KHPDIPIHIHTHDTSGAGVASMIACAEAGADVVDVAVD 527
P K + R PIH HT + A I + + +++
Sbjct: 163 --TPLEEKTIRAVARAHHETKAPIHSHTEAGTMALEQIEI-LKQENIPLEYLSIG 214
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 29.0 bits (64), Expect = 9.6
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 97 GTPGPITTTEEAMEFCLKYGLPVIFKAA 124
G P ++ +E E ++G+ V+ +A
Sbjct: 198 GQPVSMSNLKEVYEIAKQHGIFVVMDSA 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,022,259
Number of extensions: 1127820
Number of successful extensions: 4138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3972
Number of HSP's successfully gapped: 229
Length of query: 1080
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 976
Effective length of database: 3,798,009
Effective search space: 3706856784
Effective search space used: 3706856784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)