RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3968
(1080 letters)
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 225 bits (574), Expect = 3e-67
Identities = 58/301 (19%), Positives = 111/301 (36%), Gaps = 30/301 (9%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM 138
D+ A G+ G T EEA+ G P I + ++ GG G +
Sbjct: 1 DRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 58
Query: 139 EDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGN--VVHLYERDCSVQ 196
E+ F+ + + I++ + + E++++ DK N +V E ++
Sbjct: 59 EE----FEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 114
Query: 197 RRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGT-VEFLCD-ESGQFYFIEVN 254
+ +APA L M + ++ + + +G G+ V+F + ++G+ IE+N
Sbjct: 115 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN 174
Query: 255 ARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKN 314
R+ + + TG + + ++A G TL E I+ + +P+ +
Sbjct: 175 PRVSRSSALASKATGFPIAKVAAKLAVGYTLDE---LMNDITGGRTPA-----SFEPSID 226
Query: 315 FQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVIAHAADLQSSCAKMNRA 374
+ F G RL S + +V+A Q S K R
Sbjct: 227 YVVTKIPRFNFEKFAGANDRLT-----------TQMKS-VGEVMAIGRTQQESLQKALRG 274
Query: 375 L 375
L
Sbjct: 275 L 275
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2
{Aquifex aeolicus [TaxId: 63363]}
Length = 214
Score = 215 bits (547), Expect = 2e-64
Identities = 106/216 (49%), Positives = 151/216 (69%), Gaps = 3/216 (1%)
Query: 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKME 139
K +++ +GVP+VPG+ G + + EEA + G PV+ KA GGGGRG+R+ R E
Sbjct: 1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60
Query: 140 DVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRH 199
++ +N+++AS EA+ AFG G + +EKFIE P+HIE Q+LGDK GNV+HL ERDCS+QRR+
Sbjct: 61 ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRN 120
Query: 200 QKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQV 259
QK+VEIAP+ L R ++ K AK +GY NAGT+EF+ D+ G YFIE+N R+QV
Sbjct: 121 QKLVEIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQEGNLYFIEMNTRIQV 180
Query: 260 EHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKI 295
EH V+E +TG+D+V+ QI++A G L + QE +
Sbjct: 181 EHPVSEMVTGIDIVKWQIKIAAGEPLT---IKQEDV 213
>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 216
Score = 208 bits (531), Expect = 3e-62
Identities = 106/219 (48%), Positives = 147/219 (67%), Gaps = 5/219 (2%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPITTT-EEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRK 137
DKV+A A +GVP VPG+ GP+ ++ + G PVI KA+ GGGGRGMRVVR
Sbjct: 1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60
Query: 138 MEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQR 197
++ ++ +EAKAAF N +++EK++E PRH+E+Q+L D GN ++L ERDCS+QR
Sbjct: 61 DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR 120
Query: 198 RHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARL 257
RHQKVVE APAP + +R + + K +GY AGT EFL + +G+FYFIE+N R+
Sbjct: 121 RHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFE-NGEFYFIEMNTRI 179
Query: 258 QVEHTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKIS 296
QVEH VTE ITGVDL++ Q+R+A G L + QE++
Sbjct: 180 QVEHPVTEMITGVDLIKEQLRIAAGQPLS---IKQEEVH 215
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 175 bits (445), Expect = 5e-50
Identities = 64/267 (23%), Positives = 112/267 (41%), Gaps = 14/267 (5%)
Query: 84 RQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEE 143
+ A + +T E A+E + G P++ +A+Y GGR M +V E
Sbjct: 3 QHAVERLKLKQPAN--ATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYD----EA 56
Query: 144 NFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVV 203
+ +R A + + + ++ F++ ++V + D G +V + +++
Sbjct: 57 DLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSG 114
Query: 204 EIAP---APHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVE 260
+ A A L +++ M KLA + V+F + Y IEVN R
Sbjct: 115 DSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKN-NEVYLIEVNPRAART 173
Query: 261 HTVTEEITGVDLVQSQIRVAEGMTLPELGLTQEKISPQGFAIQCRVTTEDPAKNFQPDTG 320
+ TGV L + RV G +L E G+T+E I P ++++ V + P G
Sbjct: 174 VPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVI-PPYYSVKEVVLPFNKFPGVDPLLG 232
Query: 321 RIEVFRSGEGMGIRLDGASAFAGAIIS 347
E+ +GE MG+ A AFA A +
Sbjct: 233 P-EMRSTGEVMGVGRTFAEAFAKAQLG 258
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 159 bits (404), Expect = 9e-45
Identities = 26/245 (10%), Positives = 74/245 (30%), Gaps = 38/245 (15%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM 138
++ + ++G+ + + E VI K GGRG +
Sbjct: 1 ERSLEGKLLREAGLRVP-----------KKYESPEDIDGTVIVKFPGARGGRGYFIASST 49
Query: 139 EDVEENFQRASSEAKAAFGNG-AMFIEKFIERPR------------HIEVQLLGDKAGNV 185
E+ + + + IE+++ +E+ + + +
Sbjct: 50 EEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN 109
Query: 186 VHLYERDCSVQRRHQKVVE-----IAPAPHLDINVRNKMTDLAVKLAKHV------GYSN 234
+ R + + + + ++ ++ ++ KL G
Sbjct: 110 IDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIG 169
Query: 235 AGTVEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLP---ELGLT 291
++ LC+E+ + E++AR+ + + ++ G + ++ L
Sbjct: 170 PFCLQSLCNENLELVVFEMSARVDGGTNSFMNGGPYSFLYNGEPLSMGQRIAREIKMALQ 229
Query: 292 QEKIS 296
+ I
Sbjct: 230 LDMID 234
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
subdomain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 157 bits (398), Expect = 9e-44
Identities = 93/269 (34%), Positives = 139/269 (51%), Gaps = 33/269 (12%)
Query: 78 GDKVAARQAAIDSGVPIVPGTP------------------------GPITTTEEAMEFCL 113
GDK+++ A + VP +P + G T+ E+ ++
Sbjct: 1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60
Query: 114 KYGLPVIFKAAYGGGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHI 173
+ G PV+ KA+ GGGG+G+R V + EE+F +A +FI K R RH+
Sbjct: 61 RIGFPVMIKASEGGGGKGIRQVER----EEDFIALYHQAANEIPGSPIFIMKLAGRARHL 116
Query: 174 EVQLLGDKAGNVVHLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYS 233
EVQLL D+ G + L+ RDCSVQRRHQK++E AP ++M AV+L K VGY
Sbjct: 117 EVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVTIAKAETFHEMEKAAVRLGKLVGYV 176
Query: 234 NAGTVEFLCD-ESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLPEL---G 289
+AGTVE+L + G+FYF+E+N RLQVEH TE ++GV+L +Q+++A G+ + +
Sbjct: 177 SAGTVEYLYSHDDGKFYFLELNPRLQVEHPTTEMVSGVNLPAAQLQIAMGIPMHRISDIR 236
Query: 290 LTQEKISPQGFAIQCRVTTEDPAKN-FQP 317
I T+D K +P
Sbjct: 237 TLYGMNPHSASEIDFEFKTQDATKKQRRP 265
>d1rqba1 a.5.7.2 (A:307-474) Transcarboxylase 5S subunit, C-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 168
Score = 137 bits (347), Expect = 5e-38
Identities = 43/171 (25%), Positives = 65/171 (38%), Gaps = 13/171 (7%)
Query: 594 IPGGQYTNLQFQAYSLGLGEFFEDVKKAYREANLLLGDIIKVTPSSKVVGDFAQFMVQNK 653
IPGG +N++ Q + G + ++V G VTPSS++VG A F V
Sbjct: 1 IPGGMLSNMESQLRAQGAEDKMDEVMAEVPRVRKAAGFPPLVTPSSQIVGTQAVFNVMMG 60
Query: 654 LTSEEVLARAEELSFPKSVVEFLQGAI-GTPYQGFPEPLRS-KVLKDMPRIEGRPGASLP 711
E + + G +P P+ ++ + I RP LP
Sbjct: 61 ----------EYKRMTGEFADIMLGYYGASPADRDPKVVKLAEEQSGKKPITQRPADLLP 110
Query: 712 PFDFGKLKTELQERHPEATDRDVMSAALYPQVTEDYLTFRESFGPVDKLDT 762
P + K + TD DV++ AL+PQV + R GP T
Sbjct: 111 PEWEKQSKEAATLKGFNGTDEDVLTYALFPQVAPVFFEHRA-EGPHSVALT 160
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 128 bits (321), Expect = 7e-34
Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 35/242 (14%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM 138
D+ R+ +G+ VP E E PVI K GG+G + +
Sbjct: 1 DRNLERKWLKKAGIR-VP----------EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDP 49
Query: 139 EDVEENFQRASSEAK---------AAFGNGAMFIEKFIERPRHIEVQLLGDKAGN---VV 186
ED ++ + + G + E++L+ V
Sbjct: 50 EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVD 109
Query: 187 HLYERDCSVQRRHQKVVE----IAPAPHLDINVRNKMTDLAVKLAKHV-----GYSNAGT 237
+ Q + L ++ + + ++ K G
Sbjct: 110 AIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFC 169
Query: 238 VEFLCDESGQFYFIEVNARLQVEHTVTEEITGVDLVQSQIRVAEGMTLP---ELGLTQEK 294
+E + +F E++AR+ + + ++ V+ G + + +
Sbjct: 170 LEGVFTPDLEFVVFEISARIVAGTNIFVNGSPYTWLRYDRPVSTGRRIAMEIREAIENDM 229
Query: 295 IS 296
+
Sbjct: 230 LE 231
>d1ulza1 b.84.2.1 (A:329-451) Biotin carboxylase (BC), C-domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 123
Score = 113 bits (283), Expect = 4e-30
Identities = 46/121 (38%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 299 GFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVI 358
G+AI+CR+ EDP KNF P T IE + G GIR++ +A G ++PYYDS++ K+I
Sbjct: 3 GYAIECRINAEDPKKNFAPSTRVIERYYVPGGFGIRVEH-AAARGFEVTPYYDSMIAKLI 61
Query: 359 AHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTL 418
A + +M AL + + GVKT IP L+N++ + F G T +++E+P++F
Sbjct: 62 TWAPTWDEAVERMRAALETYEITGVKTTIPLLINIMKEKDFKAGKFTTKYLEEHPEVFEY 121
Query: 419 Q 419
+
Sbjct: 122 E 122
>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
ATP-binding domain {Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 113 bits (283), Expect = 3e-29
Identities = 41/205 (20%), Positives = 71/205 (34%), Gaps = 16/205 (7%)
Query: 80 KVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKME 139
K A A +G+P P T T EEA+ +G PV+ K G GR +
Sbjct: 1 KWATSVALAKAGLP-QPKT-ALATDREEALRLMEAFGYPVVLKPVIGSWGRL--LAXXXX 56
Query: 140 DVEENFQRASSEAKAAFGNGAMFIEKFIERPR-HIEVQLLGDKAGNVVHLYERDCSVQRR 198
E F + +I++++E+P I V ++G++A ++
Sbjct: 57 XXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTA 116
Query: 199 HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQ 258
E P + K A V+ E EVN ++
Sbjct: 117 RGGQAENCPLTEEVARLSVK--------AAEAVGGGVVAVDLFESE-RGLLVNEVNHTME 167
Query: 259 VEHTVTEEITGVDLVQSQIRVAEGM 283
++ + TGVD+ ++ A +
Sbjct: 168 FKN--SVHTTGVDIPGEILKYAWSL 190
>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 206
Score = 112 bits (280), Expect = 1e-28
Identities = 40/214 (18%), Positives = 65/214 (30%), Gaps = 20/214 (9%)
Query: 70 SPYVVQQMGDK--VAARQAAIDSGVPIVPGTPGPITTT-EEAMEFCLKYGLPVIFKAAYG 126
S + DK V A+ AI + P T E PV+ K +
Sbjct: 2 SLESIYNFCDKPWVFAQMVAIFKTLG-GEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHA 60
Query: 127 GGGRGMRVVRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVV 186
G G V D ++ + E FI+ I VQ +G N
Sbjct: 61 HSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIG---NNYK 111
Query: 187 HLYERDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESG 246
S + + + ++ ++ G + V+ + + G
Sbjct: 112 AYMRTSISGNWKTNTGSAMLEQIAMS----DRYKLWVDACSEMFGGLDICAVKAVHGKDG 167
Query: 247 QFYFIEVNA---RLQVEHTVTEEITGVDLVQSQI 277
+ Y EV L EH V + DLV S++
Sbjct: 168 KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 201
>d2j9ga1 b.84.2.1 (A:331-446) Biotin carboxylase (BC), C-domain
{Escherichia coli [TaxId: 562]}
Length = 116
Score = 107 bits (269), Expect = 3e-28
Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 299 GFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVI 358
G A++CR+ EDP F P G+I F + G G+R + +AG + PYYDS++ K+I
Sbjct: 2 GHAVECRINAEDP-NTFLPSPGKITRFHAPGGFGVR-WESHIYAGYTVPPYYDSMIGKLI 59
Query: 359 AHAADLQSSCAKMNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQL 415
+ + + A+M AL+E + G+KTN+ + ++ ++ F +G + +++++ L
Sbjct: 60 CYGENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGL 116
>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 116
Score = 105 bits (263), Expect = 2e-27
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 299 GFAIQCRVTTEDPAKNFQPDTGRIEVFRSGEGMGIRLDGASAFAGAIISPYYDSLLVKVI 358
G CR+T+EDP F+P G + + S I + DS +
Sbjct: 2 GHCTACRITSEDPNDGFKPSGGTLHELNFRSSSNVW-GYFSVGNNGNIHSFSDSQFGHIF 60
Query: 359 AHAADLQSSCAKMNRALREFRVRG-VKTNIPFLLNVLTNQKFVNGAVDTYFIDE 411
A + Q+S M AL+E +RG +T + +L+ +L + F + + T ++D+
Sbjct: 61 AFGENRQASRKHMVVALKELSIRGDFRTTVEYLIKLLETEDFEDNTITTGWLDD 114
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 106 bits (264), Expect = 2e-25
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 466 INTFDMAGLLKPRAAKLLIGAIREKHPD-IPIHIHTHDTSGAGVASMIACAEAGADVVDV 524
I DMA LLKP+ A +I AI++ + I++H H T+G S++ EAG DVVD
Sbjct: 178 IALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDT 237
Query: 525 AVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQLYAPFECTTTMKS 584
A+ SMS +V L+G+ T LD + +++ R Y FE +
Sbjct: 238 AISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFE---SKTL 294
Query: 585 GNADVYLNE 593
+ ++ ++
Sbjct: 295 VDTSIFKSQ 303
Score = 96.5 bits (239), Expect = 3e-22
Identities = 63/245 (25%), Positives = 98/245 (40%), Gaps = 15/245 (6%)
Query: 801 VRQNKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATFDVAL 860
V + + + + + RDAHQSL+ATR+ D++ + +S+E WGGAT+D +
Sbjct: 5 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAA--GYWSVECWGGATYDSCI 62
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLLRGANAVGYTNYPDNEMHIHPKAAKSVPGQVGAP 920
RFL+E PWERL RK +PN QMLLRG N +GY +Y D + + V
Sbjct: 63 RFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRV 122
Query: 921 MPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGANAVGYT 980
+ K A + + V+G VK +L GA+++
Sbjct: 123 FDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQ-LLDMGADSIALK 181
Query: 981 NYP-----DNVVYKFCDLSVQVGMDVFRVFDSLNY----LPNLILGMEAAGKAGGVVEAA 1031
+ + G + +L+ +EA VV+ A
Sbjct: 182 DMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVD---VVDTA 238
Query: 1032 ISYTG 1036
IS
Sbjct: 239 ISSMS 243
>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
transformylase PurT, domain 2 {Escherichia coli [TaxId:
562]}
Length = 206
Score = 100 bits (249), Expect = 2e-24
Identities = 30/205 (14%), Positives = 61/205 (29%), Gaps = 8/205 (3%)
Query: 84 RQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEE 143
R AA + +P + E G P I K G+G +R E + +
Sbjct: 7 RLAAEELQLPTSTY--RFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQ 64
Query: 144 NFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRRHQKVV 203
++ ++ G G + +E ++ I + + G +++
Sbjct: 65 AWKY--AQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESW 122
Query: 204 EIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQVEHTV 263
+ L + ++ V G L + F EV+ R V
Sbjct: 123 QPQQMSPLALERAQEIARKVVLALGGYGLFG----VELFVCGDEVIFSEVSPRPHDTGMV 178
Query: 264 TEEITGVDLVQSQIRVAEGMTLPEL 288
T + +R G+ + +
Sbjct: 179 TLISQDLSEFALHVRAFLGLPVGGI 203
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 93.6 bits (231), Expect = 3e-22
Identities = 27/209 (12%), Positives = 54/209 (25%), Gaps = 14/209 (6%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM 138
D++ +Q +P P + E + G I K GG + +
Sbjct: 1 DRLTQKQLFDKLHLPTAPWQL--LAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRA 58
Query: 139 EDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQRR 198
+ E+ A G +E+ I + + G+ V Q
Sbjct: 59 NETEQ---------LPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDG 109
Query: 199 HQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFIEVNARLQ 258
+ P + R + A+ E+ R+
Sbjct: 110 ILRTSVAFPQANAQQQARAEEMLSAIMQELGYVGVM---AMECFVTPQGLLINELAPRVH 166
Query: 259 VEHTVTEEITGVDLVQSQIRVAEGMTLPE 287
T+ + + +R + LP+
Sbjct: 167 NSGHWTQNGASISQFELHLRAITDLPLPQ 195
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Aquifex aeolicus [TaxId: 63363]}
Length = 114
Score = 89.2 bits (221), Expect = 9e-22
Identities = 38/79 (48%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVL 60
H + ADE+Y++G P++ YLN II +A E DAIHPGYGFL+E ++FA+
Sbjct: 38 TARHVKLADEAYMIGT--DPLDTYLNKQRIINLALEVGADAIHPGYGFLAENAEFAKMCE 95
Query: 61 DAGIRFIGPSPYVVQQMGD 79
+AGI FIGP V++ MGD
Sbjct: 96 EAGITFIGPHWKVIELMGD 114
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 114
Score = 80.4 bits (198), Expect = 1e-18
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 1 MHMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVL 60
H ADE+ +G P V++YLNIP II A+ AIHPGYGFLSE ++FA+ V
Sbjct: 38 DLKHVLLADETVCIGPA-PSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVE 96
Query: 61 DAGIRFIGPSPYVVQQMG 78
+G FIGP ++ MG
Sbjct: 97 RSGFIFIGPKAETIRLMG 114
>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
{Escherichia coli, gene ddlB [TaxId: 562]}
Length = 210
Score = 81.3 bits (199), Expect = 7e-18
Identities = 35/217 (16%), Positives = 76/217 (35%), Gaps = 22/217 (10%)
Query: 80 KVAARQAAIDSGVPIVPGTP-----GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRV 134
K+ ++ +G+P+ P +++ + GLPVI K + G GM
Sbjct: 1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 60
Query: 135 VRKMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCS 194
V +++ + AF + + + V +LG++ + +
Sbjct: 61 VVAENALQDAL-------RLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTF 113
Query: 195 VQRRHQKVVEIAPA---PHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQFYFI 251
+ + + L+ + + L +K +G G ++ + D GQFY +
Sbjct: 114 YDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLL 173
Query: 252 EVNARLQVEHT----VTEEITGV---DLVQSQIRVAE 281
E N + + G+ LV + +A+
Sbjct: 174 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 210
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 80.5 bits (197), Expect = 2e-17
Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 20/190 (10%)
Query: 79 DKVAARQAAIDSGVPIVPGT--PGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVR 136
DK ++ +G+ + + G V KAA G G+ V
Sbjct: 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVT 60
Query: 137 KMEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYERDCSVQ 196
E+ E + + + IE+ + R +EV ++G+ V + Q
Sbjct: 61 NAEEYTEALS------DSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQ 114
Query: 197 RRHQKVVE------------IAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDE 244
+ L V ++ +A+ K + ++FL DE
Sbjct: 115 GSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE 174
Query: 245 SGQFYFIEVN 254
+ Y E N
Sbjct: 175 NNVPYLGEPN 184
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 170
Score = 75.5 bits (185), Expect = 2e-16
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLD 61
+ + AD+ V G Y N+ I+ +A+ DVDA+ G+G SE + +
Sbjct: 94 AEYIRMADQYIEVPGG-TNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQ 152
Query: 62 A--GIRFIGPSPYVVQQM 77
+ + FIGP ++ +
Sbjct: 153 SKRKVIFIGPPGNAMRSL 170
>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
Length = 224
Score = 75.3 bits (184), Expect = 1e-15
Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 18/217 (8%)
Query: 80 KVAARQAAIDSGVPIVPGTP--GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRK 137
K + +P T T E A+ + + G P++ KA G+G+ V
Sbjct: 2 KAFTKDFLARHKIP----TAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT 57
Query: 138 MEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGD---KAGNVVHLYER--D 192
+E+ E + + IE+F++ + ++ ++R D
Sbjct: 58 LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGD 117
Query: 193 CSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVG------YSNAGTVEFLCDESG 246
+ +PAP + +V + + + Y+ + D+ G
Sbjct: 118 KDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMIDKQG 177
Query: 247 QFYFIEVNARL-QVEHTVTEEITGVDLVQSQIRVAEG 282
IE N R +E DLV+ + E
Sbjct: 178 NPKVIEFNCRFGDLETQPIMLRMKSDLVELCLAACES 214
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 63.0 bits (153), Expect = 6e-13
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 909 AAKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
A K+ G++ AP+ G+V +I VK GD V+ G ++VL AMKME + AP G V+ +
Sbjct: 3 AGKAGEGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 62
Score = 29.5 bits (66), Expect = 0.34
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 910 AKSVPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
A + ++ AP G V ++ VK D V+ G L+ +
Sbjct: 41 AMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 64.3 bits (155), Expect = 6e-12
Identities = 39/224 (17%), Positives = 73/224 (32%), Gaps = 23/224 (10%)
Query: 80 KVAARQAAIDSGVPIVPGTP--GPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRK 137
KV A++ G+ T T EE E K+ P + KA G+G+ ++
Sbjct: 2 KVYAKRFMKKYGIR----TARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDS 57
Query: 138 MEDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKA-------GNVVHLYE 190
E+ E + G + I++F+ + ++ + + L +
Sbjct: 58 KEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMD 117
Query: 191 RDCSVQRRHQKVVEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCD-ESGQFY 249
D P I ++ D + + GY+ G + G Y
Sbjct: 118 GDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPY 177
Query: 250 FIEVNARL-----QVEHTVTEEITGVDLVQSQIRVAEGMTLPEL 288
+E N RL +V T+ E V + + G + +
Sbjct: 178 ILEYNVRLGDPETEVIVTLNPE----GFVNAVLEGYRGGKMEPV 217
>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
C-domain {Enterococcus faecium [TaxId: 1352]}
Length = 211
Score = 59.0 bits (141), Expect = 3e-10
Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 22/189 (11%)
Query: 79 DKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKM 138
DK A ++G+ TP ++ + PV K A G G++ V
Sbjct: 1 DKSLTYIVAKNAGIA----TPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSA 56
Query: 139 EDVEENFQRASSEAKAAFGNGAMFIEKFIERPRHIEVQLLGDKAGNVVHLYER---DCSV 195
++++ + A + + + + +LG+ A VV ++ +
Sbjct: 57 DELDYAIESA-------RQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGI 109
Query: 196 QRRHQKV--------VEIAPAPHLDINVRNKMTDLAVKLAKHVGYSNAGTVEFLCDESGQ 247
R HQ+V I L R ++ + K+ K +G V+ ++G+
Sbjct: 110 FRIHQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGR 169
Query: 248 FYFIEVNAR 256
EVN
Sbjct: 170 IVLNEVNTL 178
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 56.9 bits (136), Expect = 5e-09
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 3/106 (2%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPDIP---IHIHTHDTSGAGVASMIACAEAGADVVDVAV 526
+ P I + + + +H H+ G VA+ AGAD ++ +
Sbjct: 193 ATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCL 252
Query: 527 DSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAYSAYWEQTRQL 572
T + + +L +D +D +I E QL
Sbjct: 253 FGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQL 298
Score = 29.6 bits (65), Expect = 2.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 805 KSLLLMDTTFRDAHQSLLAT 824
++ L RD +Q+L+
Sbjct: 10 RAPLWCAVDLRDGNQALIDP 29
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG,
catalytic domain {Pseudomonas sp. [TaxId: 306]}
Length = 289
Score = 56.2 bits (134), Expect = 7e-09
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 470 DMAGLLKPRAAKLLIGAIREKHPD-IPIHIHTHDTSGAGVASMIACAEAGADVVDVAVDS 528
D G + + + A + + +H H GVA+ I E G D VD ++
Sbjct: 169 DSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAG 228
Query: 529 MSGMTSQPSMGAVVASLQGSDIDTGLDLKDI 559
M + +A + + G DL +
Sbjct: 229 MGAGAGNAPLEVFIAVAERLGWNHGTDLYTL 259
Score = 51.9 bits (123), Expect = 2e-07
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 804 NKSLLLMDTTFRDAHQSLLATRVRSHDLLKISPFVAHKFNNLYSLENWGGATF---DVAL 860
+K L + D T RD + + + D+ I+ + + S+E G
Sbjct: 5 SKKLYISDVTLRDGSHA-IRHQYTLDDVRAIARALDK--AKVDSIEVAHGDGLQGSSFNY 61
Query: 861 RFLHECPWERLEEMRKQIPNIPFQMLL 887
F E +E + +I + LL
Sbjct: 62 GFGRHTDLEYIEAVAGEISHAQIATLL 88
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 45.5 bits (108), Expect = 1e-06
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
+V E VK GD V + ++ + + K + + + GV+K + +
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYN 64
Score = 31.3 bits (71), Expect = 0.10
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
+ + G + ++ + D G LV +
Sbjct: 50 ITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 45.2 bits (107), Expect = 1e-06
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 913 VPGQVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
VP +G ++ + V VGD + L+ L K M V A V GVVK +
Sbjct: 7 VP-DIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVK 61
Score = 29.0 bits (65), Expect = 0.63
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 920 PMPGSVMEIRVKVGDKVEKGAALVVLSA 947
+ G V E++VKVGDK+ +G +VV+ A
Sbjct: 50 EVAGVVKEVKVKVGDKISEGGLIVVVEA 77
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSI 965
G +++ VK GD+V + L + K + + +PV+G V I
Sbjct: 16 GEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEI 58
Score = 33.6 bits (77), Expect = 0.015
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 917 VGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
+ +P+ G V+EI V G G L+ L A
Sbjct: 47 IPSPVKGKVLEILVPEGTVATVGQTLITLDA 77
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 44.4 bits (105), Expect = 2e-06
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
V E+ VKVGDKV +L+ + K M V AP GVVK + +
Sbjct: 15 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 60
Score = 30.9 bits (70), Expect = 0.11
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 919 APMPGSVMEIRVKVGDKVEKGAALVVLSA 947
AP G V E++V VGDKV+ G+ +++
Sbjct: 48 APFAGVVKELKVNVGDKVKTGSLIMIFEV 76
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 42.8 bits (101), Expect = 7e-06
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
+V K GD V + LV + K+ + V A G++ ++
Sbjct: 17 ATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62
Score = 29.7 bits (67), Expect = 0.34
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLS 946
+V A G + + G V L L
Sbjct: 47 EVPASADGILDAVLEDEGTTVTSRQILGRLR 77
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 41.0 bits (96), Expect = 4e-05
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 923 GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
G+V K G+ V++ +V + K+ M V A GV+ I +
Sbjct: 16 GTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Score = 29.4 bits (66), Expect = 0.46
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSA 947
+V A G + EI GD V G L L+
Sbjct: 46 EVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 40.2 bits (94), Expect = 6e-05
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 921 MPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDAS 968
G V+E+ VK GD +E LVVL + K M V +P GVVKS+
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVK 58
Score = 27.9 bits (62), Expect = 1.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 920 PMPGSVMEIRVKVGDKVEKGAALVVL 945
P G V + VK+GDK+++G A++ L
Sbjct: 47 PKAGVVKSVSVKLGDKLKEGDAIIEL 72
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.9 bits (88), Expect = 7e-04
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 912 SVPGQVGAPMP--------GSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVK 963
S P + +P G+V KVG+K+ +G L + K + + +G +
Sbjct: 1 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLA 60
Query: 964 SIDAS 968
I
Sbjct: 61 KILVP 65
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 35.1 bits (79), Expect = 0.033
Identities = 10/70 (14%), Positives = 24/70 (34%)
Query: 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVLSAMKMEMVVQAPVQGVVKSIDASMLLRGAN 975
+V + G +++ K G V+ G L + E Q+ + + + + +
Sbjct: 17 EVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLV 76
Query: 976 AVGYTNYPDN 985
A +
Sbjct: 77 ADQAVSKQQY 86
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 31.8 bits (72), Expect = 0.057
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 916 QVGAPMPGSVMEIRVKVGDKVEKGAALVVL 945
Q+ A G+V I V+ G VE LVV+
Sbjct: 50 QIEADKSGTVKAILVESGQPVEFDEPLVVI 79
>d1u1ia1 c.2.1.3 (A:1-227,A:333-392) Myo-inositol 1-phosphate
synthase {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 287
Score = 33.4 bits (76), Expect = 0.11
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 85 QAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVI---FKAAYGG 127
AA+ G+P TP P + E K G+P KA
Sbjct: 187 YAALKLGLPYANFTPSPGSAIPALKELAEKKGVPHAGNDGKAIVAA 232
Score = 29.9 bits (67), Expect = 1.4
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 2 HMHRQKADESYLVGKGLPPVEAYLNIPEIIRVAKENDVDAIHP-GYGFLSERSDFAQAVL 60
+ DE+ ++ + E N E + E I + S +A A L
Sbjct: 133 DIKSFADDETVVIN--VASTEPLPNYSEEYHGSLEGFERMIDEDRKEYASASMLYAYAAL 190
Query: 61 DAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIV 95
G+ + +P A ++ A GVP
Sbjct: 191 KLGLPYANFTP---SPGSAIPALKELAEKKGVPHA 222
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 33.1 bits (75), Expect = 0.16
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 12/78 (15%)
Query: 86 AAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMEDVEENF 145
+D + + + G +E KY +P I KM+ +
Sbjct: 93 RVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIA------------FANKMDKTGADL 140
Query: 146 QRASSEAKAAFGNGAMFI 163
+ G + +
Sbjct: 141 WLVIRTMQERLGARPVVM 158
>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 256
Score = 30.9 bits (69), Expect = 0.68
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 7/93 (7%)
Query: 503 TSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAY 562
G G A A GA V ++ + A A + + LD+ D ++
Sbjct: 14 ARGIGRAFAEAYVREGARVAIADIN-------LEAARATAAEIGPAACAIALDVTDQASI 66
Query: 563 SAYWEQTRQLYAPFECTTTMKSGNADVYLNEIP 595
+ + + + + EI
Sbjct: 67 DRCVAELLDRWGSIDILVNNAALFDLAPIVEIT 99
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 31.1 bits (69), Expect = 0.77
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 12 YLVGKGLPPVEAYLNIPEIIRVAKENDVDAIH 43
++ +G EAY E+ + E +
Sbjct: 359 RMIKEGASRAEAYKKAKEVKALTFEYQKWPVE 390
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Clostridium pasteurianum [TaxId: 1501]}
Length = 525
Score = 30.9 bits (69), Expect = 0.86
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 17/157 (10%)
Query: 371 MNRALREFRVRGVKTNIPFLLNVLTNQKFVNGAVDTYFIDENPQLFTLQPTKNRAQKLLN 430
L+ F V + F + V + +N T+ P + +
Sbjct: 350 YMNMLKSFGVDSLVAGFEFAHRDDYEGREVIPTIKIDADSKNIPEITVTPDEQK------ 403
Query: 431 YLGTVLVNGPSTPLATPLLPAEVTPPVPEIPLGKLI----NTFDMAGLLKPRAAKLLIGA 486
Y + + + + + E+ G ++ N DM +L+ +
Sbjct: 404 YRVVIPEDKVEELKKAGVPLSSYGGMMKEMHDGTILIDDMNHHDMEVVLEKLKPDMFFAG 463
Query: 487 IREKH-------PDIPIHIHTHDTSGAGVASMIACAE 516
I+EK +H + ++ AG ++
Sbjct: 464 IKEKFVIQKGGVLSKQLHSYDYNGPYAGFRGVVNFGH 500
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 29.0 bits (65), Expect = 0.93
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 915 GQVGAPM-PGSVMEIRVKVGDKVEKGAALVVLSA 947
G+ G P+ G E+ V VG ++ +G + +
Sbjct: 34 GRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHR 67
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 124
Score = 29.2 bits (65), Expect = 1.2
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 56 AQAVLDAGIRFIGPSPYVVQQMGDKVAARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKY 115
AQ + + G++ + + G A + + G+ I T + EE ++ +
Sbjct: 58 AQIIANNGVKAV-----IASSPGPN--AFEVLNELGIKIYRATGTSV---EENLKLFTEG 107
Query: 116 GLPVIFKAAYGGGGRG 131
L I G G R
Sbjct: 108 NLEEIRSPGSGRGRRR 123
>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 244
Score = 29.3 bits (65), Expect = 2.0
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 503 TSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAY 562
G G + + A GA VV + A+ A L + LD+ + +
Sbjct: 15 ARGMGASHVRAMVAEGAKVVFGDIL-------DEEGKAMAAELADAARYVHLDVTQPAQW 67
Query: 563 SAYWEQTRQLYAP 575
A + +
Sbjct: 68 KAAVDTAVTAFGG 80
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 29.4 bits (65), Expect = 2.3
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 12 YLVGKGLPPVEAYLNIPEIIRVAKENDVD 40
L+ KG+ EAY + A E V
Sbjct: 352 ALIDKGMAREEAYDVVQPRAMEAWEKQVA 380
>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419
{Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 29.2 bits (65), Expect = 2.4
Identities = 13/49 (26%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 82 AARQAAIDSGVPIVPGTPGPITTTEEAMEFCLKYGLPVI---FKAAYGG 127
AA A G V P I +E + L V A GG
Sbjct: 168 AALYANKRGGAAFVNVIPTFIANDPAFVELAKENNLVVFGDDGSPALGG 216
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 103
Score = 27.8 bits (62), Expect = 2.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 922 PGSVMEIRVKVGDKVEKGAALVVLSA 947
+ + K+GD+V+KG AL + +
Sbjct: 44 LAVGIVLHKKIGDRVQKGEALATIHS 69
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 29.5 bits (65), Expect = 2.9
Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 979 YTNYPDNVVYKFCDLSVQVGMDVFRVFDSLNY---LPNLILGMEAAGKAGGVVEAAISYT 1035
+ NY D + ++G+ + R+ ++ + PN + + ++ V
Sbjct: 60 WGNYKTFH-----DNAQKMGLKIARL--NVEWSRIFPNPLPRPQNFDESKQDVTEVEINE 112
Query: 1036 GDVSDPSKK--KYDLKYYQNLADELVKAGTHVLCI 1068
++ + K L +Y+ + +L G + +
Sbjct: 113 NELKRLDEYANKDALNHYREIFKDLKSRGLYFILN 147
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 133
Score = 27.8 bits (61), Expect = 3.7
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD 520
L IR+ +P+ T + C E+G D
Sbjct: 70 LTQRIRQLGLTLPVIGVTANAL---AEEKQRCLESGMD 104
>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I
[TaxId: 4577]}
Length = 80
Score = 26.8 bits (59), Expect = 3.8
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 495 PIHIHTHDTSGAGVASMIACAEAGADVVDVAVDSMSGMT 533
P+ ++ S A EAG+D V ++ +
Sbjct: 2 PMKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEH 40
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 105
Score = 27.4 bits (61), Expect = 3.8
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 922 PGSVMEIRVKVGDKVEKGAALVVLSA 947
++GD+V+ L V+ A
Sbjct: 44 YSVGFTDMARLGDQVDGQRPLAVIHA 69
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD,
receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Length = 140
Score = 27.7 bits (61), Expect = 3.9
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD 520
L I PD+P+ + T + + + GA
Sbjct: 62 LFRKILALDPDLPMILV---TGHGDIPMAVQAIQDGAY 96
>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase
GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 157
Score = 28.0 bits (61), Expect = 4.2
Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 5/119 (4%)
Query: 27 IPE--IIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGPSPYVVQQMGDKVAAR 84
+P+ IR +E D++ + L+ I++ + K+
Sbjct: 1 LPDGFYIRRMEEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNEATVWNDNEDKKIMQY 60
Query: 85 QAAI---DSGVPIVPGTPGPITTTEEAMEFCLKYGLPVIFKAAYGGGGRGMRVVRKMED 140
+ + I + + + Y G G G ++ ++
Sbjct: 61 NPMVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQGQGLGKLLIDQLVT 119
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 28.4 bits (62), Expect = 5.5
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 12/67 (17%)
Query: 350 YDSLLVKVIAHAADLQSSCAKMNRALREFRVRGVKTNIPF----LLNVLTNQKFVNGAVD 405
++ + +AH M+ AL V P LL+ L FV + +
Sbjct: 379 INA--IYAMAHGLQ------NMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGE 430
Query: 406 TYFIDEN 412
+ DE
Sbjct: 431 EVWFDEK 437
>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase
{Thermus thermophilus, TTHB020 [TaxId: 274]}
Length = 241
Score = 28.1 bits (62), Expect = 5.6
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 503 TSGAGVASMIACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTGLDLKDISAY 562
SG G A++ A GA +V V + + + VA+L+ I D+ D A
Sbjct: 14 ASGIGRAALDLFAREGASLVAVDRE-------ERLLAEAVAALEAEAIAVVADVSDPKAV 66
Query: 563 SAYWEQTRQLYAP 575
A + + + +
Sbjct: 67 EAVFAEALEEFGR 79
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 28.2 bits (61), Expect = 5.7
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 505 GAGVASM---IACAEAGADVVDVAVDSMSGMTSQPSMGAVVASLQGSDIDTG 553
G G+A + +A + G + +++ + S + G + ASL S + G
Sbjct: 12 GGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDG 63
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 27.9 bits (61), Expect = 7.5
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 12 YLVGKGLPPVEAYLNIPEIIRVAKENDVD 40
L+ KGL EAY + ++
Sbjct: 359 KLIEKGLTRKEAYDIVQRNALKTWNSEKH 387
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 28.0 bits (61), Expect = 7.7
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 12 YLVGKGLPPVEAYLNIPEIIRVAKENDVD 40
YLV KG+P +A+ + + +A+ +
Sbjct: 360 YLVRKGVPFRQAHTASGKAVHLAETKGIT 388
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 26.8 bits (59), Expect = 7.7
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD 520
++ ++ +I + I T+ + + E GA
Sbjct: 63 ILKRMKVIDENIRV-IIM--TAYGELDMIQESKELGAL 97
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
(NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 137
Score = 26.5 bits (58), Expect = 8.8
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 483 LIGAIREKHPDIPIHIHTHDTSGAGVASMIACAEAGAD 520
++ I+E+ P+ + + T + + + + GA
Sbjct: 62 ILKWIKERSPETEVIVI---TGHGTIKTAVEAMKMGAY 96
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 116
Score = 26.2 bits (57), Expect = 9.8
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 27 IPEIIRVAKENDVDAIHPGYGFLSERSDFAQAVLDAGIRFIGP 69
++ + A E + G SE + + + AG+ +
Sbjct: 69 GLQVAKEAVEAGFKKLWFQPGAESE--EIRRFLEKAGVEYSFG 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,004,197
Number of extensions: 195971
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 86
Length of query: 1080
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 985
Effective length of database: 1,103,246
Effective search space: 1086697310
Effective search space used: 1086697310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (27.0 bits)