BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3969
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CT6|A Chain A, Solution Structure Of The Sh3 Domain-Binding Glutamic
Acid- Rich-Like Protein 2
Length = 111
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 13 GVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPP 72
G +KK+QQ V+ L++ I++ +DIT E ++++M +N P + NPLPP
Sbjct: 19 GFVAIKKKQQDVVRFLEANKIEFEEVDITM--SEEQRQWMYKN--VPPEKKPTQGNPLPP 74
Query: 73 QIFNEEDYCG 82
QIFN + YCG
Sbjct: 75 QIFNGDRYCG 84
>pdb|1U6T|A Chain A, Crystal Structure Of The Human Sh3 Binding Glutamic-Rich
Protein Like
Length = 121
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 13 GVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSN-PLP 71
G +KK+QQ VL L++ I + DI E +++M++N P +S + PLP
Sbjct: 11 GSTAIKKKQQDVLGFLEANKIGFEEKDIA--ANEENRKWMREN---VPENSRPATGYPLP 65
Query: 72 PQIFNEEDYCG 82
PQIFNE Y G
Sbjct: 66 PQIFNESQYRG 76
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 8 SNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGK-ENEKEFMQQNSKATPSDSTVK 66
S +V G + +K +Q V ILD K I Y ++DI++ +E + N KAT
Sbjct: 8 STSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKAT------- 60
Query: 67 SNPLPPQIFNEEDYCG 82
PPQI N + YCG
Sbjct: 61 ----PPQIVNGDQYCG 72
>pdb|1WRY|A Chain A, Solution Structure Of The Sh3 Domain-Binding Glutamic
Acid- Rich-Like Protein
Length = 121
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 13 GVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSN-PLP 71
G +KK+QQ VL L++ I + DI E +++M++N P +S + PLP
Sbjct: 19 GSTAIKKKQQDVLGFLEANKIGFEEKDIA--ANEENRKWMREN---VPENSRPATGYPLP 73
Query: 72 PQIFNEEDYCG 82
PQIFNE Y G
Sbjct: 74 PQIFNESQYRG 84
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 8 SNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGK-ENEKEFMQQNSKATPSDSTVK 66
S +V G + +K +Q V ILD K I Y ++DI++ +E + N KAT
Sbjct: 15 STSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKAT------- 67
Query: 67 SNPLPPQIFNEEDYCG 82
PPQI N YCG
Sbjct: 68 ----PPQIVNGNHYCG 79
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 8 SNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGK-ENEKEFMQQNSKATPSDSTVK 66
S +V G + +K +Q V ILD K I Y ++DI++ +E + N KAT
Sbjct: 8 STSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKAT------- 60
Query: 67 SNPLPPQIFNEEDYCG 82
PPQI N YCG
Sbjct: 61 ----PPQIVNGNHYCG 72
>pdb|1GNW|A Chain A, Structure Of Glutathione S-Transferase
pdb|1GNW|B Chain B, Structure Of Glutathione S-Transferase
pdb|1BX9|A Chain A, Glutathione S-Transferase In Complex With Herbicide
Length = 211
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKE-FMQQN 55
+RVL+ L KN+D+ ++ + E++KE F+ +N
Sbjct: 15 RRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRN 49
>pdb|3NDA|A Chain A, Crystal Structure Of Serpin From Tick Ixodes Ricinus
pdb|3NDA|B Chain B, Crystal Structure Of Serpin From Tick Ixodes Ricinus
Length = 377
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 4 PYKISNTV-RGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSD 62
PY +S + G + + Q+ L S+ + ++ +D+T+ G + + K+TPS+
Sbjct: 34 PYSVSTAMGMAFAGARGQTQQEL----SQGLGFSDVDLTDAGVLDAYTHHTERLKSTPSN 89
Query: 63 STV 65
ST+
Sbjct: 90 STL 92
>pdb|3E61|A Chain A, Crystal Structure Of A Putative Transcriptional Repressor
Of Ribose Operon From Staphylococcus Saprophyticus
Subsp. Saprophyticus
pdb|3E61|B Chain B, Crystal Structure Of A Putative Transcriptional Repressor
Of Ribose Operon From Staphylococcus Saprophyticus
Subsp. Saprophyticus
Length = 277
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 14 VKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPL 70
+ +R Q + ILD + IDY +++ T +N+K+F+ K DS + SN L
Sbjct: 134 IDAFHQRVQGIKYILDQQRIDYKMLEATL--LDNDKKFIDL-IKELSIDSIICSNDL 187
>pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
Length = 722
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 20 RQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPL 70
R ++ L + DY + ++ ++ KE+++Q T D T+K P+
Sbjct: 202 RHLKIFHSLQGNDKDYIDLAFSKKKADDRKEWLRQYEPGTVLDPTLKEIPI 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,487,498
Number of Sequences: 62578
Number of extensions: 81986
Number of successful extensions: 153
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 17
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)