Query psy3969
Match_columns 86
No_of_seqs 108 out of 454
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 21:57:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03030 GRX_SH3BGR Glutaredoxi 100.0 1.4E-32 3.1E-37 179.7 8.5 75 4-86 2-76 (92)
2 PF04908 SH3BGR: SH3-binding, 100.0 9E-31 2E-35 174.0 7.9 79 4-86 3-82 (99)
3 KOG4023|consensus 99.9 1.8E-24 4E-29 145.3 5.1 81 1-85 1-81 (108)
4 cd03031 GRX_GRX_like Glutaredo 99.8 7.4E-21 1.6E-25 133.4 8.0 76 3-86 1-76 (147)
5 PRK10824 glutaredoxin-4; Provi 99.8 1.4E-19 3.1E-24 122.7 7.2 66 3-86 16-86 (115)
6 TIGR00365 monothiol glutaredox 99.8 8.4E-19 1.8E-23 114.2 7.7 66 3-86 13-83 (97)
7 cd03027 GRX_DEP Glutaredoxin ( 99.8 8.3E-19 1.8E-23 107.1 6.8 66 3-86 2-67 (73)
8 PHA03050 glutaredoxin; Provisi 99.8 8.6E-19 1.9E-23 116.8 7.1 69 2-86 13-85 (108)
9 PRK10638 glutaredoxin 3; Provi 99.8 1.5E-18 3.3E-23 108.6 7.2 68 1-86 1-68 (83)
10 cd03418 GRX_GRXb_1_3_like Glut 99.8 2.9E-18 6.2E-23 103.7 7.5 67 3-86 1-67 (75)
11 COG0695 GrxC Glutaredoxin and 99.8 4.7E-18 1E-22 107.7 8.0 67 3-86 2-69 (80)
12 TIGR02189 GlrX-like_plant Glut 99.8 2.3E-18 5E-23 112.5 6.5 66 3-86 9-77 (99)
13 cd03028 GRX_PICOT_like Glutare 99.8 3.9E-18 8.4E-23 109.0 7.2 66 3-86 9-79 (90)
14 TIGR02181 GRX_bact Glutaredoxi 99.7 1.4E-17 3E-22 102.4 7.1 65 4-86 1-65 (79)
15 PRK11200 grxA glutaredoxin 1; 99.7 1.4E-17 3.1E-22 104.4 6.7 68 3-86 2-74 (85)
16 cd03029 GRX_hybridPRX5 Glutare 99.7 3.1E-17 6.8E-22 99.7 6.4 65 3-86 2-66 (72)
17 TIGR02190 GlrX-dom Glutaredoxi 99.7 9.7E-17 2.1E-21 99.9 6.5 65 3-86 9-73 (79)
18 TIGR02183 GRXA Glutaredoxin, G 99.7 3.4E-16 7.4E-21 99.3 6.8 67 4-86 2-73 (86)
19 cd02066 GRX_family Glutaredoxi 99.6 8.9E-16 1.9E-20 89.5 7.0 66 3-86 1-66 (72)
20 PRK12759 bifunctional gluaredo 99.6 5.4E-16 1.2E-20 122.2 7.3 73 1-86 1-76 (410)
21 PF00462 Glutaredoxin: Glutare 99.6 1.4E-15 2.9E-20 89.8 6.6 60 4-81 1-60 (60)
22 PTZ00062 glutaredoxin; Provisi 99.6 1.1E-15 2.3E-20 112.0 7.5 66 3-86 114-184 (204)
23 PRK10329 glutaredoxin-like pro 99.5 3.6E-14 7.7E-19 89.9 7.7 64 3-85 2-65 (81)
24 TIGR02194 GlrX_NrdH Glutaredox 99.5 5.4E-14 1.2E-18 85.8 7.4 63 4-85 1-64 (72)
25 cd03419 GRX_GRXh_1_2_like Glut 99.5 4.5E-14 9.7E-19 86.1 6.9 68 3-86 1-69 (82)
26 TIGR02180 GRX_euk Glutaredoxin 99.5 1.3E-13 2.8E-18 84.0 6.9 67 4-86 1-70 (84)
27 KOG1752|consensus 99.4 1.5E-12 3.3E-17 87.1 7.3 69 2-86 14-83 (104)
28 TIGR02196 GlrX_YruB Glutaredox 99.3 3.9E-11 8.4E-16 70.2 7.8 65 3-85 1-65 (74)
29 KOG2824|consensus 99.2 3.4E-11 7.5E-16 92.4 6.8 75 3-85 132-206 (281)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.2 1.6E-10 3.5E-15 67.5 7.8 65 3-85 1-65 (73)
31 COG0278 Glutaredoxin-related p 99.2 3.2E-11 6.8E-16 81.4 5.2 53 21-85 33-86 (105)
32 KOG0911|consensus 99.0 4.9E-10 1.1E-14 84.0 5.9 53 21-85 157-209 (227)
33 TIGR02200 GlrX_actino Glutared 99.0 2.2E-09 4.8E-14 64.0 7.2 64 3-84 1-66 (77)
34 cd02973 TRX_GRX_like Thioredox 98.8 1.5E-08 3.3E-13 59.9 6.1 60 2-83 1-65 (67)
35 cd00570 GST_N_family Glutathio 98.4 1.1E-06 2.4E-11 49.6 6.3 62 5-84 2-63 (71)
36 cd03041 GST_N_2GST_N GST_N fam 98.4 3.3E-06 7.1E-11 51.7 7.8 62 4-83 2-65 (77)
37 cd03040 GST_N_mPGES2 GST_N fam 98.4 2.2E-06 4.8E-11 51.8 6.8 54 3-77 1-54 (77)
38 cd03037 GST_N_GRX2 GST_N famil 98.3 3.2E-06 7E-11 50.4 6.1 60 5-84 2-62 (71)
39 cd02977 ArsC_family Arsenate R 98.3 1.2E-06 2.7E-11 56.6 4.1 46 4-57 1-46 (105)
40 PRK01655 spxA transcriptional 98.2 2.7E-06 5.9E-11 58.0 4.9 46 4-57 2-47 (131)
41 cd03036 ArsC_like Arsenate Red 98.2 3.1E-06 6.7E-11 56.0 4.3 45 4-56 1-45 (111)
42 cd03060 GST_N_Omega_like GST_N 98.1 1.3E-05 2.9E-10 47.9 6.5 60 4-82 1-61 (71)
43 cd03032 ArsC_Spx Arsenate Redu 98.1 7.6E-06 1.7E-10 54.2 4.9 45 4-56 2-46 (115)
44 TIGR01617 arsC_related transcr 98.0 1E-05 2.2E-10 53.7 5.1 45 4-56 1-45 (117)
45 cd03051 GST_N_GTT2_like GST_N 97.9 5.4E-05 1.2E-09 44.4 6.4 62 5-82 2-64 (74)
46 cd03055 GST_N_Omega GST_N fami 97.9 5.8E-05 1.3E-09 47.4 6.3 62 3-83 18-80 (89)
47 PRK13344 spxA transcriptional 97.9 2.2E-05 4.8E-10 53.8 4.3 48 4-57 2-50 (132)
48 PRK12559 transcriptional regul 97.8 3.1E-05 6.7E-10 53.0 4.5 44 4-55 2-45 (131)
49 cd03056 GST_N_4 GST_N family, 97.8 0.00018 3.9E-09 42.2 7.2 63 5-83 2-64 (73)
50 cd03035 ArsC_Yffb Arsenate Red 97.8 8.4E-05 1.8E-09 49.0 5.6 46 4-55 1-47 (105)
51 cd03059 GST_N_SspA GST_N famil 97.7 0.00021 4.6E-09 42.1 6.6 59 5-82 2-60 (73)
52 PRK10026 arsenate reductase; P 97.7 0.0001 2.2E-09 51.6 5.6 51 1-57 1-52 (141)
53 cd03045 GST_N_Delta_Epsilon GS 97.7 0.00031 6.8E-09 41.6 6.8 61 5-81 2-62 (74)
54 COG4545 Glutaredoxin-related p 97.6 0.00012 2.6E-09 47.7 4.5 71 1-78 1-72 (85)
55 cd03033 ArsC_15kD Arsenate Red 97.6 0.00011 2.5E-09 49.1 4.1 33 3-41 1-33 (113)
56 COG1393 ArsC Arsenate reductas 97.6 0.00023 5E-09 48.3 5.6 48 4-57 3-51 (117)
57 cd03034 ArsC_ArsC Arsenate Red 97.5 0.0003 6.4E-09 46.6 5.7 48 4-57 1-49 (112)
58 TIGR00411 redox_disulf_1 small 97.5 0.00059 1.3E-08 40.8 6.2 56 2-79 1-62 (82)
59 cd03042 GST_N_Zeta GST_N famil 97.5 0.00088 1.9E-08 39.3 6.5 62 5-82 2-63 (73)
60 TIGR00014 arsC arsenate reduct 97.4 0.00045 9.7E-09 45.9 5.7 48 4-57 1-49 (114)
61 PF13417 GST_N_3: Glutathione 97.4 0.00044 9.6E-09 41.8 5.2 60 6-84 1-60 (75)
62 PRK10853 putative reductase; P 97.3 0.00069 1.5E-08 45.7 5.1 48 4-57 2-50 (118)
63 cd03054 GST_N_Metaxin GST_N fa 97.2 0.0011 2.4E-08 39.5 5.0 44 21-84 19-62 (72)
64 cd03052 GST_N_GDAP1 GST_N fami 97.2 0.0028 6E-08 38.6 6.8 62 5-82 2-63 (73)
65 TIGR02182 GRXB Glutaredoxin, G 97.0 0.0024 5.1E-08 45.5 6.2 59 6-84 2-61 (209)
66 cd03053 GST_N_Phi GST_N family 97.0 0.0059 1.3E-07 36.3 6.8 62 5-82 3-64 (76)
67 PRK10387 glutaredoxin 2; Provi 97.0 0.0031 6.8E-08 43.8 6.3 59 5-83 2-61 (210)
68 cd03039 GST_N_Sigma_like GST_N 97.0 0.0054 1.2E-07 36.3 6.4 60 5-82 2-61 (72)
69 TIGR01616 nitro_assoc nitrogen 97.0 0.0025 5.4E-08 43.6 5.5 47 4-56 3-50 (126)
70 cd03076 GST_N_Pi GST_N family, 96.9 0.0091 2E-07 35.9 7.0 59 5-82 3-61 (73)
71 PF03960 ArsC: ArsC family; I 96.9 0.0019 4E-08 42.2 4.2 45 7-57 1-46 (110)
72 PF05768 DUF836: Glutaredoxin- 96.8 0.012 2.5E-07 36.6 7.2 53 3-78 1-57 (81)
73 cd03049 GST_N_3 GST_N family, 96.7 0.01 2.3E-07 35.1 6.1 59 5-82 2-63 (73)
74 cd03050 GST_N_Theta GST_N fami 96.7 0.014 2.9E-07 34.9 6.6 61 5-81 2-62 (76)
75 cd01659 TRX_superfamily Thiore 96.7 0.01 2.3E-07 31.1 5.5 55 5-78 2-61 (69)
76 cd03077 GST_N_Alpha GST_N fami 96.7 0.017 3.7E-07 35.4 7.2 62 3-81 1-62 (79)
77 cd03026 AhpF_NTD_C TRX-GRX-lik 96.5 0.0057 1.2E-07 39.0 4.5 58 3-82 15-77 (89)
78 cd03048 GST_N_Ure2p_like GST_N 96.5 0.021 4.6E-07 34.5 6.7 56 5-77 3-58 (81)
79 PF13192 Thioredoxin_3: Thiore 96.3 0.029 6.2E-07 34.3 6.7 58 3-80 2-59 (76)
80 cd03047 GST_N_2 GST_N family, 96.3 0.041 9E-07 32.6 7.1 62 5-82 2-63 (73)
81 cd03061 GST_N_CLIC GST_N famil 96.1 0.018 3.9E-07 37.5 5.1 66 4-82 6-73 (91)
82 cd03046 GST_N_GTT1_like GST_N 96.0 0.054 1.2E-06 31.9 6.5 61 5-82 2-62 (76)
83 TIGR00412 redox_disulf_2 small 95.9 0.081 1.7E-06 32.3 7.3 53 6-81 4-60 (76)
84 cd03043 GST_N_1 GST_N family, 95.9 0.052 1.1E-06 32.6 6.3 61 11-82 3-63 (73)
85 cd03038 GST_N_etherase_LigE GS 95.9 0.023 5.1E-07 34.7 4.7 53 20-83 18-71 (84)
86 PRK09481 sspA stringent starva 95.7 0.032 6.9E-07 39.4 5.5 59 4-81 11-69 (211)
87 cd03075 GST_N_Mu GST_N family, 95.6 0.094 2E-06 32.4 6.7 67 4-81 1-68 (82)
88 PHA02125 thioredoxin-like prot 95.5 0.058 1.3E-06 32.7 5.5 52 4-77 2-53 (75)
89 PRK15113 glutathione S-transfe 95.4 0.066 1.4E-06 37.8 6.3 60 5-80 7-68 (214)
90 cd03058 GST_N_Tau GST_N family 95.4 0.1 2.2E-06 30.9 6.2 60 5-82 2-61 (74)
91 cd03044 GST_N_EF1Bgamma GST_N 95.2 0.081 1.8E-06 31.7 5.4 59 6-81 3-62 (75)
92 cd03057 GST_N_Beta GST_N famil 94.7 0.21 4.6E-06 29.6 6.2 47 21-77 11-57 (77)
93 PLN02395 glutathione S-transfe 94.3 0.21 4.5E-06 34.8 6.3 61 4-81 3-63 (215)
94 TIGR03143 AhpF_homolog putativ 94.1 0.17 3.7E-06 41.2 6.2 56 3-80 479-539 (555)
95 PRK15317 alkyl hydroperoxide r 94.0 0.16 3.5E-06 40.8 5.8 58 3-82 119-181 (517)
96 PTZ00057 glutathione s-transfe 93.9 0.4 8.6E-06 33.7 7.1 64 3-81 4-69 (205)
97 cd03080 GST_N_Metaxin_like GST 93.9 0.21 4.5E-06 29.9 5.0 44 21-84 20-63 (75)
98 TIGR03140 AhpF alkyl hydropero 93.0 0.076 1.7E-06 42.7 2.4 58 3-82 120-182 (515)
99 TIGR00862 O-ClC intracellular 92.9 0.52 1.1E-05 35.1 6.7 67 3-82 2-70 (236)
100 PLN02473 glutathione S-transfe 92.8 0.49 1.1E-05 33.0 6.2 62 4-81 3-64 (214)
101 PRK05568 flavodoxin; Provision 92.8 0.3 6.5E-06 32.3 4.8 40 1-42 1-40 (142)
102 PRK13972 GSH-dependent disulfi 92.8 0.47 1E-05 33.3 6.0 55 5-76 3-57 (215)
103 cd02947 TRX_family TRX family; 92.5 0.61 1.3E-05 26.8 5.4 36 5-48 15-55 (93)
104 TIGR02187 GlrX_arch Glutaredox 92.1 0.51 1.1E-05 33.8 5.6 59 4-84 137-203 (215)
105 cd02975 PfPDO_like_N Pyrococcu 91.5 0.82 1.8E-05 29.7 5.6 50 5-76 26-81 (113)
106 TIGR01262 maiA maleylacetoacet 90.6 0.7 1.5E-05 31.9 4.9 60 6-81 2-62 (210)
107 PRK07308 flavodoxin; Validated 90.6 0.67 1.5E-05 31.0 4.7 39 1-41 1-39 (146)
108 cd02949 TRX_NTR TRX domain, no 90.2 1.4 2.9E-05 27.3 5.5 36 5-48 18-59 (97)
109 PF13409 GST_N_2: Glutathione 89.9 0.74 1.6E-05 27.3 4.0 53 21-83 5-59 (70)
110 PF06953 ArsD: Arsenical resis 89.3 1.3 2.8E-05 30.5 5.3 69 1-81 1-83 (123)
111 PRK05569 flavodoxin; Provision 88.6 1.2 2.6E-05 29.3 4.7 39 1-41 1-39 (141)
112 PRK10357 putative glutathione 88.1 1.3 2.8E-05 30.6 4.7 31 5-41 2-32 (202)
113 PRK06756 flavodoxin; Provision 87.6 1.3 2.7E-05 29.7 4.4 39 1-41 1-39 (148)
114 PRK09004 FMN-binding protein M 86.6 1.5 3.3E-05 30.0 4.3 39 1-41 1-39 (146)
115 cd02953 DsbDgamma DsbD gamma f 86.6 3.8 8.2E-05 25.4 5.9 50 5-57 16-69 (104)
116 COG0716 FldA Flavodoxins [Ener 85.9 1.5 3.2E-05 29.8 4.0 38 1-41 1-38 (151)
117 PLN02378 glutathione S-transfe 85.6 3.1 6.8E-05 29.4 5.7 48 21-81 23-70 (213)
118 COG0625 Gst Glutathione S-tran 85.6 2.5 5.4E-05 29.5 5.1 56 5-78 2-58 (211)
119 PRK08105 flavodoxin; Provision 85.3 1.7 3.7E-05 29.9 4.1 39 1-41 1-39 (149)
120 TIGR00333 nrdI ribonucleoside- 84.8 1.1 2.4E-05 30.6 3.0 27 6-41 1-27 (125)
121 TIGR00147 lipid kinase, YegS/R 84.0 3.7 8E-05 30.3 5.6 41 1-41 1-41 (293)
122 COG4837 Uncharacterized protei 83.7 6.7 0.00015 26.6 6.2 67 9-83 17-87 (106)
123 KOG0406|consensus 82.6 5.2 0.00011 30.3 6.0 61 4-82 10-70 (231)
124 PF02798 GST_N: Glutathione S- 82.2 8.5 0.00018 23.0 7.4 52 20-81 11-64 (76)
125 PRK06703 flavodoxin; Provision 82.2 3.5 7.6E-05 27.6 4.5 39 1-41 1-39 (151)
126 PLN02817 glutathione dehydroge 82.1 4.7 0.0001 30.3 5.6 49 20-81 75-123 (265)
127 PF09822 ABC_transp_aux: ABC-t 82.0 3.9 8.4E-05 30.1 5.0 52 3-57 28-85 (271)
128 PF07315 DUF1462: Protein of u 81.6 6.8 0.00015 26.1 5.5 66 10-83 11-80 (93)
129 PRK11914 diacylglycerol kinase 81.3 5 0.00011 30.0 5.5 53 1-55 8-60 (306)
130 PF00258 Flavodoxin_1: Flavodo 81.2 4 8.7E-05 26.7 4.4 35 6-42 1-35 (143)
131 PRK11752 putative S-transferas 81.0 7.4 0.00016 28.8 6.3 57 5-78 46-108 (264)
132 PRK10629 EnvZ/OmpR regulon mod 80.4 3.6 7.8E-05 28.3 4.1 38 3-41 35-72 (127)
133 PRK10542 glutathionine S-trans 80.3 5 0.00011 27.4 4.9 59 5-80 2-62 (201)
134 PRK03767 NAD(P)H:quinone oxido 80.2 3.5 7.6E-05 29.2 4.2 39 1-41 1-40 (200)
135 cd02978 KaiB_like KaiB-like fa 80.2 7.6 0.00016 24.5 5.2 65 5-77 5-72 (72)
136 KOG4244|consensus 80.1 1.9 4.2E-05 33.7 3.0 50 10-85 59-108 (281)
137 PRK13337 putative lipid kinase 80.0 5.9 0.00013 29.7 5.5 54 1-56 1-54 (304)
138 PRK02551 flavoprotein NrdI; Pr 79.2 2.7 5.8E-05 29.8 3.2 14 1-14 1-14 (154)
139 KOG1695|consensus 78.6 7.6 0.00016 28.7 5.6 63 1-82 1-63 (206)
140 cd01480 vWA_collagen_alpha_1-V 74.6 13 0.00028 25.7 5.7 56 20-79 128-184 (186)
141 PRK09271 flavodoxin; Provision 74.2 8 0.00017 26.5 4.5 37 3-41 2-38 (160)
142 KOG3029|consensus 73.9 8.4 0.00018 30.9 5.0 56 3-79 90-145 (370)
143 PHA02278 thioredoxin-like prot 73.4 17 0.00036 23.5 5.7 61 5-81 19-85 (103)
144 cd03078 GST_N_Metaxin1_like GS 72.7 16 0.00035 22.1 5.1 56 10-85 8-63 (73)
145 PF13721 SecD-TM1: SecD export 71.5 10 0.00022 24.9 4.3 38 3-41 31-68 (101)
146 cd03065 PDI_b_Calsequestrin_N 71.4 12 0.00027 25.1 4.8 48 21-82 54-101 (120)
147 cd02985 TRX_CDSP32 TRX family, 71.1 23 0.00049 22.2 6.7 40 5-52 20-64 (103)
148 PRK13055 putative lipid kinase 71.0 13 0.00027 28.6 5.3 41 1-41 2-42 (334)
149 PRK11104 hemG protoporphyrinog 70.3 8.9 0.00019 26.9 4.1 36 3-41 2-37 (177)
150 cd03079 GST_N_Metaxin2 GST_N f 69.1 17 0.00038 22.5 4.8 45 21-84 20-64 (74)
151 KOG3192|consensus 68.4 5.8 0.00012 29.0 2.8 41 13-55 64-104 (168)
152 cd02989 Phd_like_TxnDC9 Phosdu 67.9 22 0.00048 22.9 5.3 35 5-47 27-66 (113)
153 PRK09267 flavodoxin FldA; Vali 67.9 12 0.00025 25.5 4.1 16 1-16 1-16 (169)
154 PRK03600 nrdI ribonucleotide r 67.9 6.8 0.00015 26.9 3.0 30 3-41 2-31 (134)
155 PLN02225 1-deoxy-D-xylulose-5- 67.8 17 0.00038 31.5 6.0 54 17-84 578-633 (701)
156 PF03358 FMN_red: NADPH-depend 67.8 9.1 0.0002 25.2 3.5 40 3-42 2-41 (152)
157 TIGR01754 flav_RNR ribonucleot 67.6 10 0.00022 25.1 3.8 32 3-36 2-33 (140)
158 COG1780 NrdI Protein involved 66.6 7.2 0.00016 27.7 2.9 27 4-41 3-29 (141)
159 COG1597 LCB5 Sphingosine kinas 65.7 21 0.00045 27.3 5.6 54 1-56 2-55 (301)
160 TIGR01753 flav_short flavodoxi 65.5 18 0.0004 23.1 4.6 35 5-41 2-36 (140)
161 PF10568 Tom37: Outer mitochon 64.0 10 0.00022 23.4 3.0 51 15-85 11-65 (72)
162 PRK00170 azoreductase; Reviewe 63.9 17 0.00037 25.1 4.5 41 1-41 1-44 (201)
163 PRK10670 hypothetical protein; 63.8 10 0.00022 26.4 3.3 19 23-41 3-21 (159)
164 PTZ00051 thioredoxin; Provisio 62.4 22 0.00048 21.3 4.3 31 5-41 23-58 (98)
165 PF08285 DPM3: Dolichol-phosph 62.3 7.7 0.00017 25.3 2.3 22 14-35 70-91 (91)
166 TIGR01068 thioredoxin thioredo 62.1 30 0.00065 20.3 5.1 15 32-48 46-60 (101)
167 PF07972 Flavodoxin_NdrI: NrdI 61.2 8.4 0.00018 26.3 2.4 27 6-41 1-29 (122)
168 KOG4420|consensus 60.7 2.3 5E-05 33.6 -0.5 53 21-84 38-91 (325)
169 PF11823 DUF3343: Protein of u 60.0 11 0.00023 22.8 2.5 33 1-40 1-33 (73)
170 PRK10569 NAD(P)H-dependent FMN 59.6 22 0.00047 25.4 4.4 39 3-41 2-40 (191)
171 PRK13059 putative lipid kinase 59.1 38 0.00081 25.4 5.8 41 1-41 1-41 (295)
172 KOG0868|consensus 58.5 19 0.00042 27.1 4.1 61 2-81 4-68 (217)
173 TIGR01755 flav_wrbA NAD(P)H:qu 58.4 35 0.00075 24.2 5.3 37 3-41 2-39 (197)
174 PRK09381 trxA thioredoxin; Pro 56.8 44 0.00096 20.6 5.8 56 5-82 26-89 (109)
175 KOG0867|consensus 56.6 52 0.0011 23.8 6.1 59 3-77 2-60 (226)
176 KOG1422|consensus 55.7 27 0.00059 26.5 4.5 64 4-82 4-72 (221)
177 cd02951 SoxW SoxW family; SoxW 55.5 38 0.00082 21.5 4.7 36 5-41 19-58 (125)
178 cd04336 YeaK YeaK is an unchar 55.3 14 0.00031 24.7 2.8 20 22-41 2-21 (153)
179 PRK11921 metallo-beta-lactamas 55.1 41 0.00089 26.3 5.7 40 1-42 247-288 (394)
180 PF03129 HGTP_anticodon: Antic 54.7 40 0.00086 20.4 4.5 34 6-39 2-36 (94)
181 TIGR00011 YbaK_EbsC ybaK/ebsC 54.2 13 0.00029 25.0 2.5 19 23-41 2-20 (152)
182 TIGR02690 resist_ArsH arsenica 52.9 24 0.00053 26.2 3.9 41 1-41 26-66 (219)
183 PRK09739 hypothetical protein; 52.5 35 0.00076 23.9 4.5 41 1-41 3-43 (199)
184 PLN02234 1-deoxy-D-xylulose-5- 52.1 49 0.0011 28.5 6.0 32 17-48 555-588 (641)
185 cd04906 ACT_ThrD-I_1 First of 51.3 43 0.00092 20.6 4.3 32 18-53 52-83 (85)
186 PF09413 DUF2007: Domain of un 50.3 15 0.00033 21.4 2.0 22 20-41 11-32 (67)
187 PRK00861 putative lipid kinase 50.2 50 0.0011 24.6 5.2 53 1-56 2-54 (300)
188 cd02959 ERp19 Endoplasmic reti 48.3 40 0.00087 22.0 4.0 35 6-41 25-60 (117)
189 COG1908 FrhD Coenzyme F420-red 48.1 23 0.00051 24.9 2.9 30 11-40 70-99 (132)
190 PRK05452 anaerobic nitric oxid 47.8 54 0.0012 26.7 5.4 40 1-42 251-292 (479)
191 cd00002 YbaK_deacylase This CD 47.8 19 0.00041 24.3 2.5 20 22-41 2-21 (152)
192 PF00085 Thioredoxin: Thioredo 47.7 57 0.0012 19.2 4.4 39 6-47 23-62 (103)
193 cd02957 Phd_like Phosducin (Ph 47.6 70 0.0015 20.2 6.6 54 6-82 30-90 (113)
194 PF02662 FlpD: Methyl-viologen 47.6 23 0.0005 23.8 2.8 30 11-40 69-98 (124)
195 PF13364 BetaGal_dom4_5: Beta- 47.6 13 0.00029 24.3 1.6 17 69-85 62-78 (111)
196 PF04900 Fcf1: Fcf1; InterPro 45.7 61 0.0013 20.5 4.5 27 37-78 67-93 (101)
197 cd02950 TxlA TRX-like protein 45.5 79 0.0017 21.2 5.2 31 5-41 25-61 (142)
198 COG4274 Uncharacterized conser 45.4 27 0.00058 23.7 2.8 23 16-38 27-49 (104)
199 TIGR01295 PedC_BrcD bacterioci 45.3 87 0.0019 20.6 7.2 32 4-41 27-62 (122)
200 PLN02958 diacylglycerol kinase 45.2 72 0.0016 26.1 5.8 53 1-55 111-164 (481)
201 CHL00144 odpB pyruvate dehydro 44.8 91 0.002 24.2 6.1 40 17-56 212-253 (327)
202 PF00781 DAGK_cat: Diacylglyce 44.6 85 0.0019 20.3 5.9 37 3-41 1-37 (130)
203 cd03023 DsbA_Com1_like DsbA fa 44.5 13 0.00028 23.7 1.2 57 24-85 88-144 (154)
204 COG0603 Predicted PP-loop supe 43.5 38 0.00082 25.6 3.7 33 8-41 32-64 (222)
205 cd04335 PrdX_deacylase This CD 43.3 26 0.00057 23.6 2.6 20 22-41 2-21 (156)
206 TIGR03567 FMN_reduc_SsuE FMN r 42.4 63 0.0014 22.2 4.5 39 3-41 1-39 (171)
207 TIGR02187 GlrX_arch Glutaredox 42.1 93 0.002 22.1 5.4 31 5-41 24-62 (215)
208 PF08442 ATP-grasp_2: ATP-gras 41.9 11 0.00023 27.6 0.5 52 22-82 5-56 (202)
209 cd04333 ProX_deacylase This CD 40.9 64 0.0014 21.5 4.2 34 22-57 2-35 (148)
210 cd02963 TRX_DnaJ TRX domain, D 40.9 93 0.002 19.6 5.7 41 5-47 29-70 (111)
211 cd02994 PDI_a_TMX PDIa family, 40.7 82 0.0018 19.0 4.8 41 5-47 21-62 (101)
212 PRK12359 flavodoxin FldB; Prov 40.5 54 0.0012 23.3 4.0 34 3-41 2-36 (172)
213 cd03019 DsbA_DsbA DsbA family, 40.4 13 0.00028 24.7 0.7 55 22-81 100-154 (178)
214 PF06215 ISAV_HA: Infectious s 40.4 29 0.00064 27.9 2.8 31 47-77 321-351 (391)
215 cd02956 ybbN ybbN protein fami 40.3 73 0.0016 19.0 4.1 35 5-47 17-57 (96)
216 PF01216 Calsequestrin: Calseq 40.0 73 0.0016 26.1 5.0 46 4-51 55-107 (383)
217 PLN02683 pyruvate dehydrogenas 39.7 1.1E+02 0.0024 24.1 5.9 41 17-57 239-281 (356)
218 PTZ00323 NAD+ synthase; Provis 39.5 77 0.0017 24.5 4.9 25 17-41 90-114 (294)
219 PRK07116 flavodoxin; Provision 39.3 67 0.0015 21.8 4.2 15 1-15 2-16 (160)
220 cd02993 PDI_a_APS_reductase PD 38.4 90 0.002 19.5 4.4 37 5-41 26-63 (109)
221 PF02780 Transketolase_C: Tran 38.1 53 0.0011 21.2 3.4 39 18-56 21-61 (124)
222 TIGR01261 hisB_Nterm histidino 37.9 1.3E+02 0.0029 20.6 7.7 48 20-79 70-129 (161)
223 cd02984 TRX_PICOT TRX domain, 37.9 88 0.0019 18.5 6.2 31 5-41 19-55 (97)
224 cd05015 SIS_PGI_1 Phosphogluco 37.1 1.3E+02 0.0029 20.4 6.2 40 3-42 74-117 (158)
225 cd02954 DIM1 Dim1 family; Dim1 37.0 73 0.0016 21.3 4.0 57 6-82 20-82 (114)
226 COG5494 Predicted thioredoxin/ 36.8 85 0.0018 24.3 4.7 55 5-81 14-70 (265)
227 PF12641 Flavodoxin_3: Flavodo 36.7 20 0.00043 25.2 1.2 23 6-30 2-24 (160)
228 cd05565 PTS_IIB_lactose PTS_II 36.6 40 0.00086 22.1 2.6 26 14-39 54-79 (99)
229 TIGR01752 flav_long flavodoxin 35.9 73 0.0016 21.8 4.0 35 3-41 1-35 (167)
230 PLN02582 1-deoxy-D-xylulose-5- 35.1 1.2E+02 0.0026 26.3 5.8 56 17-84 554-609 (677)
231 PF03128 CXCXC: CXCXC repeat; 35.1 18 0.00038 16.0 0.5 8 72-79 1-8 (14)
232 TIGR01126 pdi_dom protein disu 34.3 1E+02 0.0022 18.1 4.9 42 4-47 17-60 (102)
233 PF02244 Propep_M14: Carboxype 33.8 41 0.00089 19.8 2.1 21 19-39 43-63 (74)
234 PF14451 Ub-Mut7C: Mut7-C ubiq 33.6 22 0.00048 22.5 1.0 18 23-40 34-51 (81)
235 PRK14368 Maf-like protein; Pro 33.4 59 0.0013 23.6 3.2 32 1-41 2-33 (193)
236 PRK05096 guanosine 5'-monophos 33.3 68 0.0015 25.8 3.8 37 20-57 109-146 (346)
237 PF13462 Thioredoxin_4: Thiore 33.3 79 0.0017 20.4 3.6 15 70-84 136-150 (162)
238 PF09383 NIL: NIL domain; Int 33.1 54 0.0012 19.5 2.6 20 19-38 57-76 (76)
239 PF10865 DUF2703: Domain of un 33.0 1.3E+02 0.0028 20.6 4.7 47 16-81 24-72 (120)
240 PRK12361 hypothetical protein; 32.4 1.4E+02 0.0031 24.4 5.6 52 1-55 242-293 (547)
241 COG3019 Predicted metal-bindin 31.8 1E+02 0.0022 22.2 4.1 43 3-57 27-69 (149)
242 PF11009 DUF2847: Protein of u 31.2 1E+02 0.0023 20.5 3.9 54 11-76 31-84 (105)
243 cd02948 TRX_NDPK TRX domain, T 30.8 1.2E+02 0.0026 18.7 4.0 31 5-41 22-59 (102)
244 PF05014 Nuc_deoxyrib_tr: Nucl 30.4 1E+02 0.0022 19.5 3.8 29 6-34 1-29 (113)
245 TIGR00853 pts-lac PTS system, 30.2 65 0.0014 20.6 2.7 27 15-41 58-84 (95)
246 cd02654 nuc_hydro_CjNH nuc_hyd 30.0 53 0.0012 25.2 2.7 28 6-33 32-59 (318)
247 PF12949 HeH: HeH/LEM domain; 29.9 29 0.00063 19.0 0.9 15 22-36 7-21 (35)
248 TIGR00090 iojap_ybeB iojap-lik 29.9 89 0.0019 20.2 3.4 31 5-35 31-61 (99)
249 cd03001 PDI_a_P5 PDIa family, 29.6 1.3E+02 0.0028 17.9 4.8 14 32-47 50-63 (103)
250 PF10553 MSV199: MSV199 domain 29.6 67 0.0015 22.7 2.9 26 17-42 53-78 (139)
251 PRK09212 pyruvate dehydrogenas 29.5 2.5E+02 0.0054 21.6 6.3 39 17-56 212-250 (327)
252 PF12328 Rpp20: Rpp20 subunit 29.4 55 0.0012 22.9 2.5 28 4-31 4-31 (144)
253 TIGR03379 glycerol3P_GlpC glyc 29.4 97 0.0021 24.0 4.0 35 4-38 163-197 (397)
254 cd03022 DsbA_HCCA_Iso DsbA fam 29.3 36 0.00077 22.9 1.5 57 24-85 126-182 (192)
255 PF06508 QueC: Queuosine biosy 29.3 1.5E+02 0.0032 21.5 4.8 35 6-41 27-62 (209)
256 PF11008 DUF2846: Protein of u 29.3 50 0.0011 21.5 2.1 16 68-83 39-54 (117)
257 PRK12315 1-deoxy-D-xylulose-5- 29.2 1.8E+02 0.0038 24.4 5.7 24 18-41 472-496 (581)
258 cd02995 PDI_a_PDI_a'_C PDIa fa 29.0 1.1E+02 0.0025 18.0 3.6 36 6-41 24-61 (104)
259 PRK08674 bifunctional phosphog 28.9 1.8E+02 0.0039 22.2 5.4 32 9-41 261-292 (337)
260 PRK11892 pyruvate dehydrogenas 28.9 2E+02 0.0043 23.7 5.9 39 17-56 351-389 (464)
261 PRK00293 dipZ thiol:disulfide 28.8 2.1E+02 0.0046 23.9 6.2 48 6-57 480-531 (571)
262 PLN02204 diacylglycerol kinase 28.7 1.8E+02 0.004 25.0 5.8 53 1-55 159-211 (601)
263 PRK11235 bifunctional antitoxi 28.7 46 0.00099 21.3 1.8 33 24-57 35-67 (80)
264 PF07689 KaiB: KaiB domain; I 28.6 54 0.0012 20.9 2.1 17 32-50 29-45 (82)
265 COG0424 Maf Nucleotide-binding 28.5 72 0.0016 23.5 3.0 30 3-41 2-31 (193)
266 PRK05723 flavodoxin; Provision 28.3 97 0.0021 21.3 3.5 31 3-35 2-32 (151)
267 PF03708 Avian_gp85: Avian ret 28.3 29 0.00062 26.7 0.9 14 72-85 91-104 (256)
268 PF09170 STN1_2: CST, Suppress 28.2 47 0.001 24.3 2.0 29 9-37 95-123 (174)
269 TIGR03288 CoB_CoM_SS_B CoB--Co 27.6 60 0.0013 24.1 2.5 34 5-38 2-35 (290)
270 PRK03298 hypothetical protein; 27.5 41 0.0009 25.5 1.7 20 22-41 192-211 (224)
271 PRK09590 celB cellobiose phosp 27.4 73 0.0016 20.9 2.7 28 14-41 57-84 (104)
272 PRK01355 azoreductase; Reviewe 27.4 1.5E+02 0.0033 20.8 4.5 41 1-41 1-45 (199)
273 PRK10953 cysJ sulfite reductas 27.4 93 0.002 26.3 3.9 39 1-41 61-99 (600)
274 TIGR00204 dxs 1-deoxy-D-xylulo 26.9 2.1E+02 0.0046 24.1 5.9 56 17-84 506-562 (617)
275 PF03793 PASTA: PASTA domain; 26.8 97 0.0021 17.5 2.9 20 21-40 11-30 (63)
276 PF00763 THF_DHG_CYH: Tetrahyd 26.7 80 0.0017 20.8 2.8 35 23-57 49-83 (117)
277 PRK13054 lipid kinase; Reviewe 26.1 2.3E+02 0.005 21.1 5.5 50 1-55 3-52 (300)
278 cd04911 ACT_AKiii-YclM-BS_1 AC 26.0 80 0.0017 19.9 2.5 19 21-39 18-36 (76)
279 PF00271 Helicase_C: Helicase 26.0 97 0.0021 17.7 2.8 30 26-57 1-30 (78)
280 TIGR03566 FMN_reduc_MsuE FMN r 25.9 1.6E+02 0.0035 20.0 4.3 39 3-41 1-40 (174)
281 PF08308 PEGA: PEGA domain; I 25.8 47 0.001 19.3 1.4 10 73-82 14-23 (71)
282 PF08722 Tn7_Tnp_TnsA_N: TnsA 25.8 1.2E+02 0.0026 18.5 3.4 27 13-39 61-87 (88)
283 KOG2863|consensus 25.6 38 0.00082 28.1 1.2 13 68-80 73-85 (456)
284 PTZ00313 inosine-adenosine-gua 25.4 73 0.0016 24.6 2.7 28 6-33 32-59 (326)
285 PF09002 DUF1887: Domain of un 25.0 3.4E+02 0.0074 21.4 6.5 30 18-47 39-68 (381)
286 PRK13556 azoreductase; Provisi 24.9 1.7E+02 0.0037 20.6 4.4 41 1-41 1-45 (208)
287 cd00079 HELICc Helicase superf 24.8 1.7E+02 0.0037 17.7 5.9 38 18-57 38-75 (131)
288 PRK09955 rihB ribonucleoside h 24.8 1E+02 0.0022 23.8 3.4 28 6-33 32-59 (313)
289 COG3867 Arabinogalactan endo-1 24.7 81 0.0017 25.7 2.9 25 20-46 64-88 (403)
290 TIGR00649 MG423 conserved hypo 24.5 3.5E+02 0.0076 21.2 6.6 51 5-57 321-375 (422)
291 COG0426 FpaA Uncharacterized f 24.5 2E+02 0.0044 23.4 5.2 49 3-57 248-296 (388)
292 PF00585 Thr_dehydrat_C: C-ter 24.4 1.2E+02 0.0027 19.1 3.2 28 19-50 62-89 (91)
293 KOG4747|consensus 23.9 49 0.0011 23.8 1.4 32 8-39 85-116 (150)
294 cd02651 nuc_hydro_IU_UC_XIUA n 23.8 77 0.0017 23.9 2.5 29 6-34 28-56 (302)
295 PRK10954 periplasmic protein d 23.8 25 0.00054 25.0 -0.1 53 24-81 126-178 (207)
296 PF03572 Peptidase_S41: Peptid 23.7 2.2E+02 0.0047 18.6 4.5 37 5-41 4-40 (169)
297 TIGR01931 cysJ sulfite reducta 23.5 1.2E+02 0.0026 25.5 3.8 38 2-41 59-96 (597)
298 KOG3354|consensus 23.5 1.5E+02 0.0032 22.1 3.9 46 5-56 14-59 (191)
299 PF03575 Peptidase_S51: Peptid 23.4 2E+02 0.0044 19.2 4.4 20 22-41 3-22 (154)
300 cd00860 ThrRS_anticodon ThrRS 23.3 1.7E+02 0.0036 17.1 6.8 26 15-41 11-36 (91)
301 PF02540 NAD_synthase: NAD syn 23.1 83 0.0018 23.3 2.6 24 18-41 59-82 (242)
302 TIGR00172 maf MAF protein. Thi 23.0 1.2E+02 0.0026 21.8 3.3 31 1-41 1-31 (183)
303 PF09883 DUF2110: Uncharacteri 23.0 1.1E+02 0.0023 23.5 3.1 53 22-85 20-83 (225)
304 TIGR02740 TraF-like TraF-like 23.0 3E+02 0.0065 20.7 5.6 32 4-41 170-205 (271)
305 PF00731 AIRC: AIR carboxylase 22.7 2.8E+02 0.0061 19.5 5.9 46 12-57 7-52 (150)
306 cd02962 TMX2 TMX2 family; comp 22.7 1.8E+02 0.0039 20.1 4.0 38 5-50 52-96 (152)
307 PF01939 DUF91: Protein of unk 22.5 58 0.0013 24.6 1.6 19 22-40 194-212 (228)
308 COG0045 SucC Succinyl-CoA synt 22.5 2.1E+02 0.0046 23.4 4.9 54 20-82 4-57 (387)
309 COG2999 GrxB Glutaredoxin 2 [P 22.4 68 0.0015 24.2 2.0 30 6-41 3-32 (215)
310 PF05301 Mec-17: Touch recepto 22.2 1.5E+02 0.0032 20.5 3.5 40 25-74 69-108 (120)
311 cd02982 PDI_b'_family Protein 22.1 1.4E+02 0.0029 17.9 3.0 10 32-41 44-53 (103)
312 COG0022 AcoB Pyruvate/2-oxoglu 22.1 1.7E+02 0.0037 23.5 4.2 37 20-57 214-250 (324)
313 PF04392 ABC_sub_bind: ABC tra 21.9 2.9E+02 0.0063 20.3 5.3 51 2-56 132-182 (294)
314 PF10432 bact-PGI_C: Bacterial 21.9 2.4E+02 0.0052 19.4 4.6 37 5-41 75-111 (155)
315 PF00587 tRNA-synt_2b: tRNA sy 21.9 86 0.0019 21.2 2.3 37 5-41 115-152 (173)
316 PF03975 CheD: CheD chemotacti 21.8 1.5E+02 0.0032 19.4 3.4 24 18-41 63-86 (114)
317 TIGR02654 circ_KaiB circadian 21.6 1.8E+02 0.004 18.8 3.7 43 5-51 7-52 (87)
318 COG3340 PepE Peptidase E [Amin 21.6 3.1E+02 0.0068 20.9 5.4 40 3-42 33-72 (224)
319 PRK04247 hypothetical protein; 21.5 83 0.0018 24.0 2.3 19 22-40 217-235 (238)
320 cd00466 DHQase_II Dehydroquina 21.2 64 0.0014 22.8 1.5 31 23-56 82-112 (140)
321 cd03770 SR_TndX_transposase Se 21.2 1.6E+02 0.0035 19.5 3.5 30 6-35 2-38 (140)
322 PRK10768 ribonucleoside hydrol 21.0 1E+02 0.0022 23.4 2.7 27 6-32 31-57 (304)
323 TIGR00385 dsbE periplasmic pro 21.0 2.8E+02 0.006 18.8 5.9 45 6-54 69-113 (173)
324 TIGR01305 GMP_reduct_1 guanosi 20.8 1.8E+02 0.0038 23.5 4.1 36 21-57 109-145 (343)
325 PF10107 Endonuc_Holl: Endonuc 20.7 2.2E+02 0.0048 20.5 4.2 36 6-41 120-156 (156)
326 cd03003 PDI_a_ERdj5_N PDIa fam 20.7 2.1E+02 0.0045 17.2 4.5 40 5-47 23-63 (101)
327 KOG0524|consensus 20.7 1.1E+02 0.0025 24.5 3.0 39 15-54 245-283 (359)
328 COG1412 Uncharacterized protei 20.5 3.1E+02 0.0066 19.1 4.9 26 37-78 100-125 (136)
329 PF08158 NUC130_3NT: NUC130/3N 20.3 1.1E+02 0.0024 17.9 2.2 20 14-33 32-51 (52)
330 cd01351 Aconitase Aconitase ca 20.1 3.7E+02 0.008 21.6 5.8 47 5-54 270-317 (389)
331 cd00770 SerRS_core Seryl-tRNA 20.0 1.5E+02 0.0033 22.4 3.5 39 3-41 165-203 (297)
No 1
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.98 E-value=1.4e-32 Score=179.65 Aligned_cols=75 Identities=36% Similarity=0.679 Sum_probs=69.8
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeec
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGV 83 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGg 83 (86)
+.||+||+||++++|++|+++++||+++||+|++|||+ .|++.|++|++++| ++ ++++|||||||||+||||
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~--~d~~~r~em~~~~~--~~----~g~~tvPQIFi~~~~iGg 73 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDIS--MNEENRQWMRENVP--NE----NGKPLPPQIFNGDEYCGD 73 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecC--CCHHHHHHHHHhcC--CC----CCCCCCCEEEECCEEeeC
Confidence 67999999999999999999999999999999999999 89999999999997 22 256799999999999999
Q ss_pred cCC
Q psy3969 84 FRY 86 (86)
Q Consensus 84 yd~ 86 (86)
|||
T Consensus 74 ~dd 76 (92)
T cd03030 74 YEA 76 (92)
T ss_pred HHH
Confidence 986
No 2
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.97 E-value=9e-31 Score=173.96 Aligned_cols=79 Identities=38% Similarity=0.711 Sum_probs=62.4
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC-CCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK-ATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g-~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
+.||+||+|||++||++|+++.+||++++|+|++|||+ .|+++|++|++++| ..++ ..+++++|||||+||+|||
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa--~~e~~r~~mr~~~g~~~~~--~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIA--MDEEARQWMRENAGPEEKD--PGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETT--T-HHHHHHHHHHT--CCCS---TSTT--S-EEEETTEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCc--CCHHHHHHHHHhccccccC--CCCCCCCCCEEEeCCEEEe
Confidence 68999999999999999999999999999999999999 89999999999994 1111 2257899999999999999
Q ss_pred ccCC
Q psy3969 83 VFRY 86 (86)
Q Consensus 83 gyd~ 86 (86)
+||+
T Consensus 79 dye~ 82 (99)
T PF04908_consen 79 DYED 82 (99)
T ss_dssp EHHH
T ss_pred eHHH
Confidence 9984
No 3
>KOG4023|consensus
Probab=99.90 E-value=1.8e-24 Score=145.32 Aligned_cols=81 Identities=36% Similarity=0.612 Sum_probs=74.7
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
|.-+.+|++|+||++++|++|+++.++|+.++|.|+++||+ ..++.|++|.++..++.|+. +|+++|||||+||+|
T Consensus 1 m~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~--~~e~~~~~~~~~~~~e~r~~--~GnplPPqifn~d~Y 76 (108)
T KOG4023|consen 1 MMVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDIT--AYEEVRQWMDNNVPDEKRPL--NGNPLPPQIFNGDQY 76 (108)
T ss_pred CCceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeecc--chhhhHHHHHhcCChhhcCC--CCCCCCcccccCccc
Confidence 55678999999999999999999999999999999999999 89999999999997667755 467799999999999
Q ss_pred eeccC
Q psy3969 81 CGVFR 85 (86)
Q Consensus 81 iGgyd 85 (86)
|||||
T Consensus 77 ~Gdye 81 (108)
T KOG4023|consen 77 CGDYE 81 (108)
T ss_pred cccHH
Confidence 99997
No 4
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.84 E-value=7.4e-21 Score=133.37 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=69.6
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.||.||++|.++....|.+|++||++++|+|+++||+ .+++.+++|++.++ .. .++.|||||||+++|+|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs--~~~~~~~EL~~~~g--~~----~~~~tvPqVFI~G~~IG 72 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVS--MDSGFREELRELLG--AE----LKAVSLPRVFVDGRYLG 72 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHHHhC--CC----CCCCCCCEEEECCEEEe
Confidence 578999999999999999999999999999999999999 89999999999987 21 14579999999999999
Q ss_pred ccCC
Q psy3969 83 VFRY 86 (86)
Q Consensus 83 gyd~ 86 (86)
|+||
T Consensus 73 G~de 76 (147)
T cd03031 73 GAEE 76 (147)
T ss_pred cHHH
Confidence 9985
No 5
>PRK10824 glutaredoxin-4; Provisional
Probab=99.80 E-value=1.4e-19 Score=122.71 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=59.4
Q ss_pred CcEEEEEc-----ccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNT-----VRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss-----~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.||+.+ -|++ |.+|++||++.||+|+++||. .+++.|++|.+++| + +||||||||
T Consensus 16 ~Vvvf~Kg~~~~p~Cpy------c~~ak~lL~~~~i~~~~idi~--~d~~~~~~l~~~sg--~--------~TVPQIFI~ 77 (115)
T PRK10824 16 PILLYMKGSPKLPSCGF------SAQAVQALSACGERFAYVDIL--QNPDIRAELPKYAN--W--------PTFPQLWVD 77 (115)
T ss_pred CEEEEECCCCCCCCCch------HHHHHHHHHHcCCCceEEEec--CCHHHHHHHHHHhC--C--------CCCCeEEEC
Confidence 45667665 6999 999999999999999999998 78999999999998 4 499999999
Q ss_pred CeeeeccCC
Q psy3969 78 EDYCGVFRY 86 (86)
Q Consensus 78 d~yiGgyd~ 86 (86)
|+|+||||+
T Consensus 78 G~~IGG~dd 86 (115)
T PRK10824 78 GELVGGCDI 86 (115)
T ss_pred CEEEcChHH
Confidence 999999985
No 6
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.78 E-value=8.4e-19 Score=114.25 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=58.6
Q ss_pred CcEEEEE-----cccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISN-----TVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~s-----s~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.||.. +-|+. |.+|+++|+++||+|+++||. .+++.+++|.+.+| + .||||||+|
T Consensus 13 ~Vvvf~kg~~~~~~Cp~------C~~ak~lL~~~~i~~~~~di~--~~~~~~~~l~~~tg--~--------~tvP~vfi~ 74 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGF------SARAVQILKACGVPFAYVNVL--EDPEIRQGIKEYSN--W--------PTIPQLYVK 74 (97)
T ss_pred CEEEEEccCCCCCCCch------HHHHHHHHHHcCCCEEEEECC--CCHHHHHHHHHHhC--C--------CCCCEEEEC
Confidence 5666765 45888 999999999999999999998 78999999999997 3 399999999
Q ss_pred CeeeeccCC
Q psy3969 78 EDYCGVFRY 86 (86)
Q Consensus 78 d~yiGgyd~ 86 (86)
|+|+|||||
T Consensus 75 g~~iGG~dd 83 (97)
T TIGR00365 75 GEFVGGCDI 83 (97)
T ss_pred CEEEeChHH
Confidence 999999985
No 7
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.78 E-value=8.3e-19 Score=107.09 Aligned_cols=66 Identities=21% Similarity=0.211 Sum_probs=61.2
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.+|..+-|+. |.+|+++|+++||+|+++||. .+++.++++.+.+| . .++||||+||+|+|
T Consensus 2 ~v~ly~~~~C~~------C~ka~~~L~~~gi~~~~~di~--~~~~~~~el~~~~g--~--------~~vP~v~i~~~~iG 63 (73)
T cd03027 2 RVTIYSRLGCED------CTAVRLFLREKGLPYVEINID--IFPERKAELEERTG--S--------SVVPQIFFNEKLVG 63 (73)
T ss_pred EEEEEecCCChh------HHHHHHHHHHCCCceEEEECC--CCHHHHHHHHHHhC--C--------CCcCEEEECCEEEe
Confidence 578999999999 999999999999999999999 78999999999987 3 38999999999999
Q ss_pred ccCC
Q psy3969 83 VFRY 86 (86)
Q Consensus 83 gyd~ 86 (86)
||||
T Consensus 64 g~~~ 67 (73)
T cd03027 64 GLTD 67 (73)
T ss_pred CHHH
Confidence 9986
No 8
>PHA03050 glutaredoxin; Provisional
Probab=99.77 E-value=8.6e-19 Score=116.79 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=61.9
Q ss_pred CCcEEEEEcccCchhchHHHHHHHHHHHhCCC---ceEEEEccCC-CCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 2 KKPYKISNTVRGVKGVKKRQQRVLMILDSKNI---DYTVIDITEP-GKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 2 ~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I---~f~eiDI~~~-~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
.++.||.+|-|++ |.+|+++|+++|| +|+++||++. .+++.+++|.+.+| ++ ||||||+|
T Consensus 13 ~~V~vys~~~CPy------C~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG--~~--------tVP~IfI~ 76 (108)
T PHA03050 13 NKVTIFVKFTCPF------CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG--GR--------TVPRIFFG 76 (108)
T ss_pred CCEEEEECCCChH------HHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC--CC--------CcCEEEEC
Confidence 4789999999999 9999999999999 8999999831 25788999999998 44 99999999
Q ss_pred CeeeeccCC
Q psy3969 78 EDYCGVFRY 86 (86)
Q Consensus 78 d~yiGgyd~ 86 (86)
|+|+|||||
T Consensus 77 g~~iGG~dd 85 (108)
T PHA03050 77 KTSIGGYSD 85 (108)
T ss_pred CEEEeChHH
Confidence 999999985
No 9
>PRK10638 glutaredoxin 3; Provisional
Probab=99.77 E-value=1.5e-18 Score=108.58 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=63.3
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
|.++.+|.++.|+. |.+|+.+|+.+||+|+++||+ .+++.++++.+.+| .+ ++||||+|+++
T Consensus 1 m~~v~ly~~~~Cp~------C~~a~~~L~~~gi~y~~~dv~--~~~~~~~~l~~~~g--~~--------~vP~i~~~g~~ 62 (83)
T PRK10638 1 MANVEIYTKATCPF------CHRAKALLNSKGVSFQEIPID--GDAAKREEMIKRSG--RT--------TVPQIFIDAQH 62 (83)
T ss_pred CCcEEEEECCCChh------HHHHHHHHHHcCCCcEEEECC--CCHHHHHHHHHHhC--CC--------CcCEEEECCEE
Confidence 88999999999999 999999999999999999998 78888999999887 33 89999999999
Q ss_pred eeccCC
Q psy3969 81 CGVFRY 86 (86)
Q Consensus 81 iGgyd~ 86 (86)
+||||+
T Consensus 63 igG~~~ 68 (83)
T PRK10638 63 IGGCDD 68 (83)
T ss_pred EeCHHH
Confidence 999985
No 10
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.76 E-value=2.9e-18 Score=103.71 Aligned_cols=67 Identities=27% Similarity=0.253 Sum_probs=61.1
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
|+++|.++-|+. |.+|+.+|+++||+|+++||+ .+++.+++|.++.| ...+||+||++|+++|
T Consensus 1 ~i~ly~~~~Cp~------C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~~~~---------~~~~vP~v~i~g~~ig 63 (75)
T cd03418 1 KVEIYTKPNCPY------CVRAKALLDKKGVDYEEIDVD--GDPALREEMINRSG---------GRRTVPQIFIGDVHIG 63 (75)
T ss_pred CEEEEeCCCChH------HHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHHHhC---------CCCccCEEEECCEEEe
Confidence 578999999999 999999999999999999999 78999999999887 1238999999999999
Q ss_pred ccCC
Q psy3969 83 VFRY 86 (86)
Q Consensus 83 gyd~ 86 (86)
||+|
T Consensus 64 g~~~ 67 (75)
T cd03418 64 GCDD 67 (75)
T ss_pred ChHH
Confidence 9985
No 11
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.7e-18 Score=107.66 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=56.7
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc-CCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS-KATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~-g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.+.||..+-|.. |.+|+++|+++|++|++||++. ..++.+++|.++. | + .||||||+||.|+
T Consensus 2 ~v~iyt~~~CPy------C~~ak~~L~~~g~~~~~i~~~~-~~~~~~~~~~~~~~g--~--------~tvP~I~i~~~~i 64 (80)
T COG0695 2 NVTIYTKPGCPY------CKRAKRLLDRKGVDYEEIDVDD-DEPEEAREMVKRGKG--Q--------RTVPQIFIGGKHV 64 (80)
T ss_pred CEEEEECCCCch------HHHHHHHHHHcCCCcEEEEecC-CcHHHHHHHHHHhCC--C--------CCcCEEEECCEEE
Confidence 578999999999 9999999999999999999983 3334666677666 5 3 4999999999999
Q ss_pred eccCC
Q psy3969 82 GVFRY 86 (86)
Q Consensus 82 Ggyd~ 86 (86)
||+++
T Consensus 65 gg~~d 69 (80)
T COG0695 65 GGCDD 69 (80)
T ss_pred eCccc
Confidence 99875
No 12
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.75 E-value=2.3e-18 Score=112.54 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=57.0
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhH---HHHHHHhcCCCCCCCCCCCCCCCCeEEeCCe
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENE---KEFMQQNSKATPSDSTVKSNPLPPQIFNEED 79 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~---r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~ 79 (86)
++.||..+-|+. |.+|+++|+++||+|+++||+ .+++. +++|.+.+| + .|+||||+||+
T Consensus 9 ~Vvvysk~~Cp~------C~~ak~~L~~~~i~~~~vdid--~~~~~~~~~~~l~~~tg--~--------~tvP~Vfi~g~ 70 (99)
T TIGR02189 9 AVVIFSRSSCCM------CHVVKRLLLTLGVNPAVHEID--KEPAGKDIENALSRLGC--S--------PAVPAVFVGGK 70 (99)
T ss_pred CEEEEECCCCHH------HHHHHHHHHHcCCCCEEEEcC--CCccHHHHHHHHHHhcC--C--------CCcCeEEECCE
Confidence 678999999999 999999999999999999998 56554 445666666 3 49999999999
Q ss_pred eeeccCC
Q psy3969 80 YCGVFRY 86 (86)
Q Consensus 80 yiGgyd~ 86 (86)
|+|||||
T Consensus 71 ~iGG~dd 77 (99)
T TIGR02189 71 LVGGLEN 77 (99)
T ss_pred EEcCHHH
Confidence 9999985
No 13
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.75 E-value=3.9e-18 Score=109.01 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=57.1
Q ss_pred CcEEEEEc-----ccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNT-----VRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss-----~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.||..| -|+. |.+|+++|+++||+|+++||. .+++.+++|.+.+| ++ |+||||+|
T Consensus 9 ~vvvf~k~~~~~~~Cp~------C~~ak~~L~~~~i~y~~idv~--~~~~~~~~l~~~~g--~~--------tvP~vfi~ 70 (90)
T cd03028 9 PVVLFMKGTPEEPRCGF------SRKVVQILNQLGVDFGTFDIL--EDEEVRQGLKEYSN--WP--------TFPQLYVN 70 (90)
T ss_pred CEEEEEcCCCCCCCCcH------HHHHHHHHHHcCCCeEEEEcC--CCHHHHHHHHHHhC--CC--------CCCEEEEC
Confidence 34555443 5666 999999999999999999998 78999999999998 44 99999999
Q ss_pred CeeeeccCC
Q psy3969 78 EDYCGVFRY 86 (86)
Q Consensus 78 d~yiGgyd~ 86 (86)
|+|+||||+
T Consensus 71 g~~iGG~~~ 79 (90)
T cd03028 71 GELVGGCDI 79 (90)
T ss_pred CEEEeCHHH
Confidence 999999985
No 14
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.73 E-value=1.4e-17 Score=102.42 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=60.1
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeec
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGV 83 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGg 83 (86)
+.+|.++-|+. |.+|+++|+++||+|+++||+ .+++.++++.+.+| . .++||||+||+++||
T Consensus 1 v~ly~~~~Cp~------C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~~~g--~--------~~vP~i~i~g~~igg 62 (79)
T TIGR02181 1 VTIYTKPYCPY------CTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQRSG--R--------RTVPQIFIGDVHVGG 62 (79)
T ss_pred CEEEecCCChh------HHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHHHhC--C--------CCcCEEEECCEEEcC
Confidence 47899999999 999999999999999999999 89999999999887 3 389999999999999
Q ss_pred cCC
Q psy3969 84 FRY 86 (86)
Q Consensus 84 yd~ 86 (86)
|++
T Consensus 63 ~~~ 65 (79)
T TIGR02181 63 CDD 65 (79)
T ss_pred hHH
Confidence 975
No 15
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.72 E-value=1.4e-17 Score=104.35 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.+|.++-|+. |.+|+++|++ ++|+|+++||. .++.++++|.+..| . +..+|||||+|
T Consensus 2 ~v~iy~~~~C~~------C~~a~~~L~~l~~~~~~i~~~~idi~--~~~~~~~el~~~~~--~------~~~~vP~ifi~ 65 (85)
T PRK11200 2 FVVIFGRPGCPY------CVRAKELAEKLSEERDDFDYRYVDIH--AEGISKADLEKTVG--K------PVETVPQIFVD 65 (85)
T ss_pred EEEEEeCCCChh------HHHHHHHHHhhcccccCCcEEEEECC--CChHHHHHHHHHHC--C------CCCcCCEEEEC
Confidence 789999999999 9999999999 99999999998 67778889998887 2 23489999999
Q ss_pred CeeeeccCC
Q psy3969 78 EDYCGVFRY 86 (86)
Q Consensus 78 d~yiGgyd~ 86 (86)
|+++|||+|
T Consensus 66 g~~igg~~~ 74 (85)
T PRK11200 66 QKHIGGCTD 74 (85)
T ss_pred CEEEcCHHH
Confidence 999999985
No 16
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.71 E-value=3.1e-17 Score=99.67 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=57.1
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.+|.++-|+. |.+|+++|+++||+|+++||+ .++ ...+|++.+| . .++||||+||+++|
T Consensus 2 ~v~lys~~~Cp~------C~~ak~~L~~~~i~~~~~~v~--~~~-~~~~~~~~~g--~--------~~vP~ifi~g~~ig 62 (72)
T cd03029 2 SVSLFTKPGCPF------CARAKAALQENGISYEEIPLG--KDI-TGRSLRAVTG--A--------MTVPQVFIDGELIG 62 (72)
T ss_pred eEEEEECCCCHH------HHHHHHHHHHcCCCcEEEECC--CCh-hHHHHHHHhC--C--------CCcCeEEECCEEEe
Confidence 678999999999 999999999999999999998 566 4566777776 3 38999999999999
Q ss_pred ccCC
Q psy3969 83 VFRY 86 (86)
Q Consensus 83 gyd~ 86 (86)
||+|
T Consensus 63 g~~~ 66 (72)
T cd03029 63 GSDD 66 (72)
T ss_pred CHHH
Confidence 9975
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.68 E-value=9.7e-17 Score=99.91 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=56.5
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.+|..+-|+. |.+|+++|+++||+|+++||+ .+++. .+|.+.+| . .++||||+||+++|
T Consensus 9 ~V~ly~~~~Cp~------C~~ak~~L~~~gi~y~~idi~--~~~~~-~~~~~~~g--~--------~~vP~i~i~g~~ig 69 (79)
T TIGR02190 9 SVVVFTKPGCPF------CAKAKATLKEKGYDFEEIPLG--NDARG-RSLRAVTG--A--------TTVPQVFIGGKLIG 69 (79)
T ss_pred CEEEEECCCCHh------HHHHHHHHHHcCCCcEEEECC--CChHH-HHHHHHHC--C--------CCcCeEEECCEEEc
Confidence 688999999999 999999999999999999998 55554 56777666 3 48999999999999
Q ss_pred ccCC
Q psy3969 83 VFRY 86 (86)
Q Consensus 83 gyd~ 86 (86)
||+|
T Consensus 70 G~~~ 73 (79)
T TIGR02190 70 GSDE 73 (79)
T ss_pred CHHH
Confidence 9975
No 18
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.66 E-value=3.4e-16 Score=99.27 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=57.5
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhC-----CCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSK-----NIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k-----~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
+.+|.++-|+. |.+|+++|+++ +++|+++||. .+...++++.+.+| + +..+|||||+||
T Consensus 2 V~vys~~~Cp~------C~~ak~~L~~~~~~~~~i~~~~idi~--~~~~~~~~l~~~~g--~------~~~tVP~ifi~g 65 (86)
T TIGR02183 2 VVIFGRPGCPY------CVRAKQLAEKLAIERADFEFRYIDIH--AEGISKADLEKTVG--K------PVETVPQIFVDE 65 (86)
T ss_pred EEEEeCCCCcc------HHHHHHHHHHhCcccCCCcEEEEECC--CCHHHHHHHHHHhC--C------CCCCcCeEEECC
Confidence 57999999999 99999999998 5789999998 56667888888887 2 124899999999
Q ss_pred eeeeccCC
Q psy3969 79 DYCGVFRY 86 (86)
Q Consensus 79 ~yiGgyd~ 86 (86)
+++|||||
T Consensus 66 ~~igG~~d 73 (86)
T TIGR02183 66 KHVGGCTD 73 (86)
T ss_pred EEecCHHH
Confidence 99999985
No 19
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.64 E-value=8.9e-16 Score=89.47 Aligned_cols=66 Identities=26% Similarity=0.325 Sum_probs=59.7
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.+|.++.|+. |.+|+.+|++++++|+++||. .+++.+++|.+.+| . .++|+||+||+++|
T Consensus 1 ~v~ly~~~~Cp~------C~~~~~~L~~~~i~~~~~di~--~~~~~~~~l~~~~~--~--------~~~P~~~~~~~~ig 62 (72)
T cd02066 1 KVVVFSKSTCPY------CKRAKRLLESLGIEFEEIDIL--EDGELREELKELSG--W--------PTVPQIFINGEFIG 62 (72)
T ss_pred CEEEEECCCCHH------HHHHHHHHHHcCCcEEEEECC--CCHHHHHHHHHHhC--C--------CCcCEEEECCEEEe
Confidence 467899999988 999999999999999999999 78889999999887 2 38999999999999
Q ss_pred ccCC
Q psy3969 83 VFRY 86 (86)
Q Consensus 83 gyd~ 86 (86)
|+++
T Consensus 63 g~~~ 66 (72)
T cd02066 63 GYDD 66 (72)
T ss_pred cHHH
Confidence 9974
No 20
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.63 E-value=5.4e-16 Score=122.21 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCC---CCCCCCCCCCCCCeEEeC
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKAT---PSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~---~~~~~~~~~~tvPQIFig 77 (86)
|+++.||.++-|+. |.+|+++|+++||+|++|||+ .+++..+.+. ..++. ++ .+..||||||+|
T Consensus 1 m~~V~vys~~~Cp~------C~~aK~~L~~~gi~~~~idi~--~~~~~~~~~~-~~~~~~~~~~----~g~~tvP~ifi~ 67 (410)
T PRK12759 1 MVEVRIYTKTNCPF------CDLAKSWFGANDIPFTQISLD--DDVKRAEFYA-EVNKNILLVE----EHIRTVPQIFVG 67 (410)
T ss_pred CCcEEEEeCCCCHH------HHHHHHHHHHCCCCeEEEECC--CChhHHHHHH-HHhhcccccc----CCCCccCeEEEC
Confidence 89999999999999 999999999999999999998 6776554333 32200 00 134599999999
Q ss_pred CeeeeccCC
Q psy3969 78 EDYCGVFRY 86 (86)
Q Consensus 78 d~yiGgyd~ 86 (86)
|+|+||||+
T Consensus 68 ~~~igGf~~ 76 (410)
T PRK12759 68 DVHIGGYDN 76 (410)
T ss_pred CEEEeCchH
Confidence 999999985
No 21
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.63 E-value=1.4e-15 Score=89.76 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=54.8
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
+.+|.+.-|+. |.+|+++|+++||+|+++||+ .++++++++++.+| . .++||||+||+|+
T Consensus 1 V~vy~~~~C~~------C~~~~~~L~~~~i~y~~~dv~--~~~~~~~~l~~~~g--~--------~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPY------CKKAKEFLDEKGIPYEEVDVD--EDEEAREELKELSG--V--------RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHH------HHHHHHHHHHTTBEEEEEEGG--GSHHHHHHHHHHHS--S--------SSSSEEEETTEEE
T ss_pred cEEEEcCCCcC------HHHHHHHHHHcCCeeeEcccc--cchhHHHHHHHHcC--C--------CccCEEEECCEEC
Confidence 46888888888 999999999999999999999 78999999999987 3 3899999999986
No 22
>PTZ00062 glutaredoxin; Provisional
Probab=99.63 E-value=1.1e-15 Score=112.00 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=58.2
Q ss_pred CcEEEEEc-----ccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNT-----VRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss-----~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.+|..+ -|+. |.+|+++|+++||+|+++||. .|++.|++|.+.+| + +||||||||
T Consensus 114 ~Vvvf~Kg~~~~p~C~~------C~~~k~~L~~~~i~y~~~DI~--~d~~~~~~l~~~sg--~--------~TvPqVfI~ 175 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRF------SNAVVNMLNSSGVKYETYNIF--EDPDLREELKVYSN--W--------PTYPQLYVN 175 (204)
T ss_pred CEEEEEccCCCCCCChh------HHHHHHHHHHcCCCEEEEEcC--CCHHHHHHHHHHhC--C--------CCCCeEEEC
Confidence 45566663 5787 999999999999999999999 78999999999987 3 499999999
Q ss_pred CeeeeccCC
Q psy3969 78 EDYCGVFRY 86 (86)
Q Consensus 78 d~yiGgyd~ 86 (86)
|+|+||||+
T Consensus 176 G~~IGG~d~ 184 (204)
T PTZ00062 176 GELIGGHDI 184 (204)
T ss_pred CEEEcChHH
Confidence 999999985
No 23
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.54 E-value=3.6e-14 Score=89.90 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=58.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.+|.++.|+. |.+|+.+|+++||+|+++||+ .+++++++|+.. | .+ ++|+||+||.+++
T Consensus 2 ~v~lYt~~~Cp~------C~~ak~~L~~~gI~~~~idi~--~~~~~~~~~~~~-g--~~--------~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQ------CHATKRAMESRGFDFEMINVD--RVPEAAETLRAQ-G--FR--------QLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHh------HHHHHHHHHHCCCceEEEECC--CCHHHHHHHHHc-C--CC--------CcCEEEECCEEEe
Confidence 688999999999 999999999999999999999 789999998773 5 33 8999999999999
Q ss_pred ccC
Q psy3969 83 VFR 85 (86)
Q Consensus 83 gyd 85 (86)
||+
T Consensus 63 Gf~ 65 (81)
T PRK10329 63 GFR 65 (81)
T ss_pred cCC
Confidence 997
No 24
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.53 E-value=5.4e-14 Score=85.84 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=55.3
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC-eeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE-DYCG 82 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd-~yiG 82 (86)
+.+|.++.|+. |.+|+++|+++||+|+++||. .+++.++++.+ .| .+ +||+||++| +++|
T Consensus 1 v~ly~~~~Cp~------C~~ak~~L~~~~i~~~~~di~--~~~~~~~~~~~-~g--~~--------~vP~v~~~g~~~~~ 61 (72)
T TIGR02194 1 ITVYSKNNCVQ------CKMTKKALEEHGIAFEEINID--EQPEAIDYVKA-QG--FR--------QVPVIVADGDLSWS 61 (72)
T ss_pred CEEEeCCCCHH------HHHHHHHHHHCCCceEEEECC--CCHHHHHHHHH-cC--Cc--------ccCEEEECCCcEEe
Confidence 46899999999 999999999999999999999 78999998876 36 33 899999955 5999
Q ss_pred ccC
Q psy3969 83 VFR 85 (86)
Q Consensus 83 gyd 85 (86)
||+
T Consensus 62 G~~ 64 (72)
T TIGR02194 62 GFR 64 (72)
T ss_pred ccC
Confidence 997
No 25
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.52 E-value=4.5e-14 Score=86.10 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=57.8
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCC-HhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGK-ENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d-~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
|+.+|.+.-|+. |.+|+.+|++.+++|+.++|+...+ .+.+++|.+.+| . .++||||++|+++
T Consensus 1 ~v~~y~~~~Cp~------C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g--~--------~~~P~v~~~g~~i 64 (82)
T cd03419 1 PVVVFSKSYCPY------CKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTG--Q--------RTVPNVFIGGKFI 64 (82)
T ss_pred CEEEEEcCCCHH------HHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhC--C--------CCCCeEEECCEEE
Confidence 578899999999 9999999999999999999973233 556778888887 3 4899999999999
Q ss_pred eccCC
Q psy3969 82 GVFRY 86 (86)
Q Consensus 82 Ggyd~ 86 (86)
||+++
T Consensus 65 gg~~~ 69 (82)
T cd03419 65 GGCDD 69 (82)
T ss_pred cCHHH
Confidence 99974
No 26
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.49 E-value=1.3e-13 Score=84.02 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=55.9
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCc--eEEEEccCCC-CHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNID--YTVIDITEPG-KENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~--f~eiDI~~~~-d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
+.+|+++-|+. |.+|+.+|++.+++ |+.++|+... .++.++++.+.+| . .++||||+||++
T Consensus 1 V~~f~~~~Cp~------C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g--~--------~~vP~v~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPY------CKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITG--Q--------RTVPNIFINGKF 64 (84)
T ss_pred CEEEECCCChh------HHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhC--C--------CCCCeEEECCEE
Confidence 46899999999 99999999999999 9999997322 3555677877776 3 389999999999
Q ss_pred eeccCC
Q psy3969 81 CGVFRY 86 (86)
Q Consensus 81 iGgyd~ 86 (86)
+||+||
T Consensus 65 igg~~~ 70 (84)
T TIGR02180 65 IGGCSD 70 (84)
T ss_pred EcCHHH
Confidence 999985
No 27
>KOG1752|consensus
Probab=99.39 E-value=1.5e-12 Score=87.11 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCH-hHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 2 KKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKE-NEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 2 ~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~-~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
.++.||.-|.|.. |.+|+.||...++.+..+.++...+. +..+.+.+.+| .+|||+|||||+|
T Consensus 14 ~~VVifSKs~C~~------c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg----------~~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 14 NPVVIFSKSSCPY------CHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTG----------QRTVPNVFIGGKF 77 (104)
T ss_pred CCEEEEECCcCch------HHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcC----------CCCCCEEEECCEE
Confidence 3567888899999 99999999999999999999843333 23333333334 4499999999999
Q ss_pred eeccCC
Q psy3969 81 CGVFRY 86 (86)
Q Consensus 81 iGgyd~ 86 (86)
+||++|
T Consensus 78 iGG~~d 83 (104)
T KOG1752|consen 78 IGGASD 83 (104)
T ss_pred EcCHHH
Confidence 999975
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.27 E-value=3.9e-11 Score=70.19 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=58.0
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.+|+++-|+. |.+++.+|+.++|+|.++||+ .+++.++++.+..| . ..+|.||++|+.++
T Consensus 1 ~i~lf~~~~C~~------C~~~~~~l~~~~i~~~~vdi~--~~~~~~~~~~~~~~--~--------~~vP~~~~~~~~~~ 62 (74)
T TIGR02196 1 KVKVYTTPWCPP------CKKAKEYLTSKGIAFEEIDVE--KDSAAREEVLKVLG--Q--------RGVPVIVIGHKIIV 62 (74)
T ss_pred CEEEEcCCCChh------HHHHHHHHHHCCCeEEEEecc--CCHHHHHHHHHHhC--C--------CcccEEEECCEEEe
Confidence 368999999999 999999999999999999998 78888888888886 2 37999999999998
Q ss_pred ccC
Q psy3969 83 VFR 85 (86)
Q Consensus 83 gyd 85 (86)
||+
T Consensus 63 g~~ 65 (74)
T TIGR02196 63 GFD 65 (74)
T ss_pred eCC
Confidence 885
No 29
>KOG2824|consensus
Probab=99.21 E-value=3.4e-11 Score=92.44 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=68.1
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+.+|+||+.|-++.=..|.++..||++.+|.|.|-||+ .|.+-|+||++..|+ . ....+.||+|++|.|||
T Consensus 132 ~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVS--Md~~fr~EL~~~lg~--~----~~~~~LPrVFV~GryIG 203 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVS--MDSEFREELQELLGE--D----EKAVSLPRVFVKGRYIG 203 (281)
T ss_pred eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEeccc--ccHHHHHHHHHHHhc--c----cccCccCeEEEccEEec
Confidence 478999999999999999999999999999999999999 999999999999983 0 13567889999999999
Q ss_pred ccC
Q psy3969 83 VFR 85 (86)
Q Consensus 83 gyd 85 (86)
|-+
T Consensus 204 gae 206 (281)
T KOG2824|consen 204 GAE 206 (281)
T ss_pred cHH
Confidence 965
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.20 E-value=1.6e-10 Score=67.55 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=56.6
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
++.+|.++-|+. |.+++.+|+.++++|..+||+ .++..++++.+..+ . ..+|.||++++.++
T Consensus 1 ~v~l~~~~~c~~------c~~~~~~l~~~~i~~~~~~i~--~~~~~~~~~~~~~~--~--------~~vP~i~~~~~~i~ 62 (73)
T cd02976 1 EVTVYTKPDCPY------CKATKRFLDERGIPFEEVDVD--EDPEALEELKKLNG--Y--------RSVPVVVIGDEHLS 62 (73)
T ss_pred CEEEEeCCCChh------HHHHHHHHHHCCCCeEEEeCC--CCHHHHHHHHHHcC--C--------cccCEEEECCEEEe
Confidence 357888888988 999999999999999999998 67888888887764 2 37999999999999
Q ss_pred ccC
Q psy3969 83 VFR 85 (86)
Q Consensus 83 gyd 85 (86)
|++
T Consensus 63 g~~ 65 (73)
T cd02976 63 GFR 65 (73)
T ss_pred cCC
Confidence 986
No 31
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.2e-11 Score=81.35 Aligned_cols=53 Identities=17% Similarity=0.382 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCC-CceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeeccC
Q psy3969 21 QQRVLMILDSKN-IDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85 (86)
Q Consensus 21 q~~a~~lL~~k~-I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgyd 85 (86)
-.+|.++|...| ++|..+||- .|++.|+.+.+-++ |+|.||+|++|+++||||
T Consensus 33 S~~~vqiL~~~g~v~~~~vnVL--~d~eiR~~lk~~s~----------WPT~PQLyi~GEfvGG~D 86 (105)
T COG0278 33 SAQAVQILSACGVVDFAYVDVL--QDPEIRQGLKEYSN----------WPTFPQLYVNGEFVGGCD 86 (105)
T ss_pred cHHHHHHHHHcCCcceeEEeec--cCHHHHhccHhhcC----------CCCCceeeECCEEeccHH
Confidence 578999999999 899999998 79999999998885 789999999999999997
No 32
>KOG0911|consensus
Probab=99.03 E-value=4.9e-10 Score=84.02 Aligned_cols=53 Identities=25% Similarity=0.491 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeeccC
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgyd 85 (86)
-.++..+|.+.||+|.-.||. .|++.|+-..+-+. |+|.||+|++|+++||+|
T Consensus 157 S~~~v~iL~~~nV~~~~fdIL--~DeelRqglK~fSd----------WPTfPQlyI~GEFiGGlD 209 (227)
T KOG0911|consen 157 SRQLVGILQSHNVNYTIFDVL--TDEELRQGLKEFSD----------WPTFPQLYVKGEFIGGLD 209 (227)
T ss_pred cHHHHHHHHHcCCCeeEEecc--CCHHHHHHhhhhcC----------CCCccceeECCEeccCcH
Confidence 468899999999999999999 89999999888774 789999999999999997
No 33
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.01 E-value=2.2e-09 Score=64.05 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=54.0
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc-CCCCCCCCCCCCCCCCeEEe-CCee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS-KATPSDSTVKSNPLPPQIFN-EEDY 80 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~-g~~~~~~~~~~~~tvPQIFi-gd~y 80 (86)
++.+|+++-|+. |.+++.+|+.++++|+.+||+ .+++..+++.+.. + ..++|+|++ ||..
T Consensus 1 ~v~ly~~~~C~~------C~~~~~~L~~~~~~~~~idi~--~~~~~~~~~~~~~~~----------~~~vP~i~~~~g~~ 62 (77)
T TIGR02200 1 TITVYGTTWCGY------CAQLMRTLDKLGAAYEWVDIE--EDEGAADRVVSVNNG----------NMTVPTVKFADGSF 62 (77)
T ss_pred CEEEEECCCChh------HHHHHHHHHHcCCceEEEeCc--CCHhHHHHHHHHhCC----------CceeCEEEECCCeE
Confidence 478999999999 999999999999999999998 6888888888876 4 238999965 6677
Q ss_pred eecc
Q psy3969 81 CGVF 84 (86)
Q Consensus 81 iGgy 84 (86)
+...
T Consensus 63 l~~~ 66 (77)
T TIGR02200 63 LTNP 66 (77)
T ss_pred ecCC
Confidence 6543
No 34
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.83 E-value=1.5e-08 Score=59.94 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=48.5
Q ss_pred CCcEEEEEcccCchhchHHHHHHHHHHHhC-----CCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe
Q psy3969 2 KKPYKISNTVRGVKGVKKRQQRVLMILDSK-----NIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN 76 (86)
Q Consensus 2 ~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k-----~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi 76 (86)
+++.+|+++-|+. |.+++.+|+.. +|+|..+|++ .+++ +.++.| .+ ++|+||+
T Consensus 1 ~~v~~f~~~~C~~------C~~~~~~l~~l~~~~~~i~~~~id~~--~~~~----l~~~~~--i~--------~vPti~i 58 (67)
T cd02973 1 VNIEVFVSPTCPY------CPDAVQAANRIAALNPNISAEMIDAA--EFPD----LADEYG--VM--------SVPAIVI 58 (67)
T ss_pred CEEEEEECCCCCC------cHHHHHHHHHHHHhCCceEEEEEEcc--cCHh----HHHHcC--Cc--------ccCEEEE
Confidence 4688999999999 99999999864 7999999998 5554 445555 22 7999999
Q ss_pred CCeeeec
Q psy3969 77 EEDYCGV 83 (86)
Q Consensus 77 gd~yiGg 83 (86)
||++++-
T Consensus 59 ~~~~~~~ 65 (67)
T cd02973 59 NGKVEFV 65 (67)
T ss_pred CCEEEEe
Confidence 9999863
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.45 E-value=1.1e-06 Score=49.60 Aligned_cols=62 Identities=15% Similarity=0.015 Sum_probs=48.2
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
.+|+...|++ |.+++.+|+.+||+|+.++++ .++....++.+.++ ..++|.++.+|..+++.
T Consensus 2 ~ly~~~~~~~------~~~~~~~l~~~~i~~~~~~~~--~~~~~~~~~~~~~~----------~~~~P~l~~~~~~~~es 63 (71)
T cd00570 2 KLYYFPGSPR------SLRVRLALEEKGLPYELVPVD--LGEGEQEEFLALNP----------LGKVPVLEDGGLVLTES 63 (71)
T ss_pred EEEeCCCCcc------HHHHHHHHHHcCCCcEEEEeC--CCCCCCHHHHhcCC----------CCCCCEEEECCEEEEcH
Confidence 5788888888 999999999999999999997 33332224555443 34899999999988764
No 36
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.39 E-value=3.3e-06 Score=51.70 Aligned_cols=62 Identities=6% Similarity=-0.068 Sum_probs=48.1
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe--CCeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN--EEDYC 81 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi--gd~yi 81 (86)
+.+|.++.|++ |.+++.+|+.+||+|++++|. .++..+.++++.++ ..+||.+-. ||..+
T Consensus 2 ~~Ly~~~~sp~------~~kv~~~L~~~gi~y~~~~v~--~~~~~~~~~~~~~p----------~~~vP~l~~~~~~~~l 63 (77)
T cd03041 2 LELYEFEGSPF------CRLVREVLTELELDVILYPCP--KGSPKRDKFLEKGG----------KVQVPYLVDPNTGVQM 63 (77)
T ss_pred ceEecCCCCch------HHHHHHHHHHcCCcEEEEECC--CChHHHHHHHHhCC----------CCcccEEEeCCCCeEE
Confidence 56899999999 999999999999999999997 45555677776554 348999865 34555
Q ss_pred ec
Q psy3969 82 GV 83 (86)
Q Consensus 82 Gg 83 (86)
.+
T Consensus 64 ~e 65 (77)
T cd03041 64 FE 65 (77)
T ss_pred Ec
Confidence 43
No 37
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.38 E-value=2.2e-06 Score=51.77 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=42.7
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
|+.+|.+..|++ |.+|+.+|..+||+|++++++ +..+.++ +..+ ..+||.++.+
T Consensus 1 ~i~Ly~~~~~p~------c~kv~~~L~~~gi~y~~~~~~----~~~~~~~-~~~~----------~~~vP~l~~~ 54 (77)
T cd03040 1 KITLYQYKTCPF------CCKVRAFLDYHGIPYEVVEVN----PVSRKEI-KWSS----------YKKVPILRVE 54 (77)
T ss_pred CEEEEEcCCCHH------HHHHHHHHHHCCCceEEEECC----chhHHHH-HHhC----------CCccCEEEEC
Confidence 578999999998 999999999999999999986 3334444 3333 3489999977
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.29 E-value=3.2e-06 Score=50.43 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=45.9
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC-Ceeeec
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE-EDYCGV 83 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig-d~yiGg 83 (86)
.+|.+..|.+ |.+++.+|..+||+|+.+.+. ..+.. . ..+.++ ..+||.++.+ |..+++
T Consensus 2 ~Ly~~~~~p~------~~rvr~~L~~~gl~~~~~~~~--~~~~~-~-~~~~~~----------~~~vP~L~~~~~~~l~e 61 (71)
T cd03037 2 KLYIYEHCPF------CVKARMIAGLKNIPVEQIILQ--NDDEA-T-PIRMIG----------AKQVPILEKDDGSFMAE 61 (71)
T ss_pred ceEecCCCcH------hHHHHHHHHHcCCCeEEEECC--CCchH-H-HHHhcC----------CCccCEEEeCCCeEeeh
Confidence 4789999999 999999999999999999987 33322 2 233333 3489999987 888877
Q ss_pred c
Q psy3969 84 F 84 (86)
Q Consensus 84 y 84 (86)
.
T Consensus 62 s 62 (71)
T cd03037 62 S 62 (71)
T ss_pred H
Confidence 5
No 39
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.27 E-value=1.2e-06 Score=56.64 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=40.8
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
+.||.++.|+. |.+|+.+|+++||+|+++||. .++..+++|.+..+
T Consensus 1 i~iY~~~~C~~------c~ka~~~L~~~~i~~~~idi~--~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGNPNCST------SRKALAWLEEHGIEYEFIDYL--KEPPTKEELKELLA 46 (105)
T ss_pred CEEEECCCCHH------HHHHHHHHHHcCCCcEEEeec--cCCCCHHHHHHHHH
Confidence 46899999999 999999999999999999998 67777777777775
No 40
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.20 E-value=2.7e-06 Score=58.01 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=40.5
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
++||.+.-|++ |.+|+++|+++||+|+++||. .++..+++|.+-..
T Consensus 2 i~iY~~~~C~~------C~ka~~~L~~~gi~~~~idi~--~~~~~~~eL~~~l~ 47 (131)
T PRK01655 2 VTLFTSPSCTS------CRKAKAWLEEHDIPFTERNIF--SSPLTIDEIKQILR 47 (131)
T ss_pred EEEEeCCCChH------HHHHHHHHHHcCCCcEEeecc--CChhhHHHHHHHHH
Confidence 68999999999 999999999999999999998 67877777766553
No 41
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.16 E-value=3.1e-06 Score=55.96 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=37.9
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
+.||..+.|++ |.+|+++|+++||+|+++||. .++..++++.+-.
T Consensus 1 i~iY~~~~C~~------c~ka~~~L~~~~i~~~~idi~--~~~~~~~el~~~~ 45 (111)
T cd03036 1 LKFYEYPKCST------CRKAKKWLDEHGVDYTAIDIV--EEPPSKEELKKWL 45 (111)
T ss_pred CEEEECCCCHH------HHHHHHHHHHcCCceEEeccc--CCcccHHHHHHHH
Confidence 46899999999 999999999999999999997 5676666655433
No 42
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.14 E-value=1.3e-05 Score=47.94 Aligned_cols=60 Identities=18% Similarity=0.043 Sum_probs=46.1
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC-Ceeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE-EDYCG 82 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig-d~yiG 82 (86)
|.+|.+..|++ |.+++.+|+.+|++|+.++|+ .. ....++.+..+ ..+||-+..+ |..+.
T Consensus 1 ~~ly~~~~~p~------~~rv~~~L~~~gl~~e~~~v~--~~-~~~~~~~~~np----------~~~vP~L~~~~g~~l~ 61 (71)
T cd03060 1 PILYSFRRCPY------AMRARMALLLAGITVELREVE--LK-NKPAEMLAASP----------KGTVPVLVLGNGTVIE 61 (71)
T ss_pred CEEEecCCCcH------HHHHHHHHHHcCCCcEEEEeC--CC-CCCHHHHHHCC----------CCCCCEEEECCCcEEe
Confidence 68899999999 999999999999999999997 22 22345666543 3489999886 65553
No 43
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.07 E-value=7.6e-06 Score=54.18 Aligned_cols=45 Identities=9% Similarity=0.032 Sum_probs=37.4
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
+.+|.+..|+. |.+|+.+|+++||+|+.+||. .++..++++.+-.
T Consensus 2 i~iY~~~~C~~------c~ka~~~L~~~gi~~~~idi~--~~~~~~~el~~~~ 46 (115)
T cd03032 2 IKLYTSPSCSS------CRKAKQWLEEHQIPFEERNLF--KQPLTKEELKEIL 46 (115)
T ss_pred EEEEeCCCCHH------HHHHHHHHHHCCCceEEEecC--CCcchHHHHHHHH
Confidence 67999999999 999999999999999999997 5655555555444
No 44
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.05 E-value=1e-05 Score=53.65 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=39.1
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
+.+|.++.|+. |.+|+++|+++||+|+++|+. .++..++++.+..
T Consensus 1 i~iY~~~~C~~------c~ka~~~L~~~~i~~~~idi~--~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYGSPNCTT------CKKARRWLEANGIEYQFIDIG--EDGPTREELLDIL 45 (117)
T ss_pred CEEEeCCCCHH------HHHHHHHHHHcCCceEEEecC--CChhhHHHHHHHH
Confidence 46899999999 999999999999999999998 6777777776544
No 45
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.95 E-value=5.4e-05 Score=44.39 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=45.1
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe-CCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN-EEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi-gd~yiG 82 (86)
.+|.+..|++ |.+++.+|..+||+|+.+.|+...+.....++.+..+ ...+|-+.. ||..+.
T Consensus 2 ~Ly~~~~s~~------~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p----------~~~vP~l~~~~~~~l~ 64 (74)
T cd03051 2 KLYDSPTAPN------PRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNP----------AGTVPVLELDDGTVIT 64 (74)
T ss_pred EEEeCCCCcc------hHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCC----------CCCCCEEEeCCCCEEe
Confidence 5788888999 9999999999999999988862122233455666554 237999986 554443
No 46
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=97.90 E-value=5.8e-05 Score=47.44 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=46.9
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC-Ceee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE-EDYC 81 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig-d~yi 81 (86)
.+.+|....|++ |.+++.+|..+||+|+.+++. ... ..+++.+.++ ...+|.++.+ |..+
T Consensus 18 ~~~Ly~~~~sp~------~~kv~~~L~~~gl~~~~~~v~--~~~-~~~~~~~~np----------~~~vPvL~~~~g~~l 78 (89)
T cd03055 18 IIRLYSMRFCPY------AQRARLVLAAKNIPHEVININ--LKD-KPDWFLEKNP----------QGKVPALEIDEGKVV 78 (89)
T ss_pred cEEEEeCCCCch------HHHHHHHHHHcCCCCeEEEeC--CCC-CcHHHHhhCC----------CCCcCEEEECCCCEE
Confidence 357888888999 999999999999999999997 222 2344655543 2379999987 6665
Q ss_pred ec
Q psy3969 82 GV 83 (86)
Q Consensus 82 Gg 83 (86)
..
T Consensus 79 ~e 80 (89)
T cd03055 79 YE 80 (89)
T ss_pred EC
Confidence 43
No 47
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.87 E-value=2.2e-05 Score=53.80 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=37.7
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHhcC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQNSK 57 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~~g 57 (86)
+.||...-|+. |.+|+.+|+++||+|+++|+. +|-+.+....+.+++|
T Consensus 2 i~iY~~~~C~~------crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 2 IKIYTISSCTS------CKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKTE 50 (132)
T ss_pred EEEEeCCCCHH------HHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhC
Confidence 67999999999 999999999999999999995 3344444455555554
No 48
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.83 E-value=3.1e-05 Score=53.04 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=35.7
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHh
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~ 55 (86)
+.||.+.-|++ |.+|+.+|+++||+|+++|+. .+|-.++++.+-
T Consensus 2 i~iY~~~~C~~------crkA~~~L~~~gi~~~~~di~--~~~~s~~el~~~ 45 (131)
T PRK12559 2 VVLYTTASCAS------CRKAKAWLEENQIDYTEKNIV--SNSMTVDELKSI 45 (131)
T ss_pred EEEEeCCCChH------HHHHHHHHHHcCCCeEEEEee--CCcCCHHHHHHH
Confidence 67999999999 999999999999999999996 444444444433
No 49
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.82 E-value=0.00018 Score=42.24 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=46.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeec
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGV 83 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGg 83 (86)
.+|+.-.|++ |.+++.+|+.+|++|++++|+....+....++.+... ..++|-+..+|..+..
T Consensus 2 ~Ly~~~~~~~------~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p----------~~~vP~l~~~~~~i~e 64 (73)
T cd03056 2 KLYGFPLSGN------CYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNP----------NGEVPVLELDGRVLAE 64 (73)
T ss_pred EEEeCCCCcc------HHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCC----------CCCCCEEEECCEEEEc
Confidence 5788888888 9999999999999999999862122334455665443 3379999988876643
No 50
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.76 E-value=8.4e-05 Score=49.02 Aligned_cols=46 Identities=11% Similarity=0.019 Sum_probs=35.1
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHh
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQN 55 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~ 55 (86)
+.+|..+.|+. |.+|+.+|+++||+|+++|+. +|-+.+....+.+.
T Consensus 1 i~iy~~~~C~~------crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 1 ITLYGIKNCDT------VKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred CEEEeCCCCHH------HHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 46899999998 999999999999999999995 23333444444443
No 51
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=97.74 E-value=0.00021 Score=42.13 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=43.0
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|.+..|.+ |++++.+|+.+||+|++++++ ... ...++.+..+ ...+|.+..||.-+.
T Consensus 2 ~ly~~~~~~~------~~~v~~~l~~~gi~~~~~~v~--~~~-~~~~~~~~~p----------~~~vP~l~~~~~~l~ 60 (73)
T cd03059 2 TLYSGPDDVY------SHRVRIVLAEKGVSVEIIDVD--PDN-PPEDLAELNP----------YGTVPTLVDRDLVLY 60 (73)
T ss_pred EEEECCCChh------HHHHHHHHHHcCCccEEEEcC--CCC-CCHHHHhhCC----------CCCCCEEEECCEEEE
Confidence 5788888888 999999999999999999886 221 2234444432 237999888776543
No 52
>PRK10026 arsenate reductase; Provisional
Probab=97.70 E-value=0.0001 Score=51.63 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=41.0
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHhcC
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQNSK 57 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~~g 57 (86)
|+.+.||....|+. |.+|+.+|+++||+|+++|+- +|-+.+....+.+++|
T Consensus 1 m~~i~iY~~p~Cst------~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 1 MSNITIYHNPACGT------SRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMG 52 (141)
T ss_pred CCEEEEEeCCCCHH------HHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCC
Confidence 78899999999999 999999999999999999994 3334455555555554
No 53
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.68 E-value=0.00031 Score=41.61 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=45.3
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.+|++..|++ |.+++.+|+.+||+|+.++|+-...+..+.++.+... ...||-+..+|..+
T Consensus 2 ~Ly~~~~~~~------~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p----------~~~vP~l~~~~~~l 62 (74)
T cd03045 2 DLYYLPGSPP------CRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNP----------QHTVPTLVDNGFVL 62 (74)
T ss_pred EEEeCCCCCc------HHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCc----------CCCCCEEEECCEEE
Confidence 5888999999 9999999999999999988862123334456665443 33799998777554
No 54
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00012 Score=47.66 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=49.7
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC-CCCCCCCCCCCCCCCeEEeCC
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK-ATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g-~~~~~~~~~~~~tvPQIFigd 78 (86)
|+||.+|.|-.|+- |.-|+..|++.+|+|+.++|+. +-+..++++.-|-. ++=-....++..-.|-+-.+|
T Consensus 1 mskp~lfgsn~Cpd------ca~a~eyl~rl~v~yd~VeIt~-Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d 72 (85)
T COG4545 1 MSKPKLFGSNLCPD------CAPAVEYLERLNVDYDFVEITE-SMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDD 72 (85)
T ss_pred CCCceeeccccCcc------hHHHHHHHHHcCCCceeeehhh-hhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCC
Confidence 89999999999999 9999999999999999999983 45555665543321 000011123555667766554
No 55
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.57 E-value=0.00011 Score=49.14 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=30.5
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
++.||....|+. |.+|+.+|+++||+|+++|+.
T Consensus 1 ~i~iy~~p~C~~------crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCAN------NARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHH------HHHHHHHHHHcCCCcEEeehh
Confidence 467999999999 999999999999999999995
No 56
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00023 Score=48.26 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=38.2
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHhcC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQNSK 57 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~~g 57 (86)
++||.+..|+. |..|+..|+++||+|+++|+. +|-+.+....+.+.+|
T Consensus 3 itiy~~p~C~t------~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPNCST------CRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCCChH------HHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 68999999999 999999999999999999995 3344455555555554
No 57
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.53 E-value=0.0003 Score=46.57 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=39.5
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHhcC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQNSK 57 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~~g 57 (86)
+.+|..+.|+. |.+|+.+|+++||+|+++|+. +|-+.+....+.+.+|
T Consensus 1 i~iy~~~~C~t------~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSK------SRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHH------HHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 46899999999 999999999999999999994 3445666667777665
No 58
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.49 E-value=0.00059 Score=40.84 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=41.3
Q ss_pred CCcEEEEEcccCchhchHHHHHHHHHHHh------CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEE
Q psy3969 2 KKPYKISNTVRGVKGVKKRQQRVLMILDS------KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75 (86)
Q Consensus 2 ~~~~~y~ss~sgn~~vK~~q~~a~~lL~~------k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIF 75 (86)
+++++|+++-|+. |..++.+|+. ..+.+..||+. .+++.. ++.| - ..+|.++
T Consensus 1 ~~v~~f~~~~C~~------C~~~~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~----~~~~--v--------~~vPt~~ 58 (82)
T TIGR00411 1 VKIELFTSPTCPY------CPAAKRVVEEVAKEMGDAVEVEYINVM--ENPQKA----MEYG--I--------MAVPAIV 58 (82)
T ss_pred CEEEEEECCCCcc------hHHHHHHHHHHHHHhcCceEEEEEeCc--cCHHHH----HHcC--C--------ccCCEEE
Confidence 4689999999999 9988888763 23778888887 555433 3344 2 2689999
Q ss_pred eCCe
Q psy3969 76 NEED 79 (86)
Q Consensus 76 igd~ 79 (86)
++|+
T Consensus 59 ~~g~ 62 (82)
T TIGR00411 59 INGD 62 (82)
T ss_pred ECCE
Confidence 9886
No 59
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.45 E-value=0.00088 Score=39.32 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=44.1
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|....|++ +.+++.+|..+||+|+.+.++.........++.+... ...+|.+..+|..+.
T Consensus 2 ~L~~~~~~~~------~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p----------~~~vP~l~~~~~~l~ 63 (73)
T cd03042 2 ILYSYFRSSA------SYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNP----------QGLVPTLVIDGLVLT 63 (73)
T ss_pred EEecCCCCcc------hHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCC----------CCCCCEEEECCEEEE
Confidence 4677777777 8899999999999999988862122233455665443 348999988877664
No 60
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.45 E-value=0.00045 Score=45.92 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=38.3
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHhcC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQNSK 57 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~~g 57 (86)
+.+|....|+. |.+|+.+|+++||+|+++|+. .|-+.+...++.+.+|
T Consensus 1 i~iy~~~~C~t------~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSK------SRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHH------HHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 46888888988 999999999999999999994 3445555666666665
No 61
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.43 E-value=0.00044 Score=41.83 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=47.5
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
+|...-|.+ |++|+.+|+.+||+|+.++++ .. +.+.+..+..+ ..+||-+-.||..+.+.
T Consensus 1 Ly~~~~Sp~------~~kv~~~l~~~~i~~~~~~v~--~~-~~~~~~~~~~p----------~~~vPvL~~~g~~l~dS 60 (75)
T PF13417_consen 1 LYGFPGSPY------SQKVRLALEEKGIPYELVPVD--PE-EKRPEFLKLNP----------KGKVPVLVDDGEVLTDS 60 (75)
T ss_dssp EEEETTSHH------HHHHHHHHHHHTEEEEEEEEB--TT-STSHHHHHHST----------TSBSSEEEETTEEEESH
T ss_pred CCCcCCChH------HHHHHHHHHHcCCeEEEeccC--cc-cchhHHHhhcc----------cccceEEEECCEEEeCH
Confidence 577888888 999999999999999999998 22 22566666664 23899999998877653
No 62
>PRK10853 putative reductase; Provisional
Probab=97.27 E-value=0.00069 Score=45.68 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=36.4
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHhcC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQNSK 57 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~~g 57 (86)
+.+|-..-|+. |.+|+.+|+++||+|+.+|+- +|-+.+....+.+..|
T Consensus 2 i~iy~~~~C~t------~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 2 VTLYGIKNCDT------IKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELG 50 (118)
T ss_pred EEEEcCCCCHH------HHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcC
Confidence 67898889998 999999999999999999994 2334444444444433
No 63
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.21 E-value=0.0011 Score=39.52 Aligned_cols=44 Identities=16% Similarity=0.012 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
|.+++.+|+.+||+|+.++++ ... .+ +...+|.+..+|..+.++
T Consensus 19 ~~~v~~~L~~~~i~~~~~~~~--~~~--------~~----------p~g~vP~l~~~g~~l~es 62 (72)
T cd03054 19 CLKVETYLRMAGIPYEVVFSS--NPW--------RS----------PTGKLPFLELNGEKIADS 62 (72)
T ss_pred HHHHHHHHHhCCCceEEEecC--Ccc--------cC----------CCcccCEEEECCEEEcCH
Confidence 999999999999999999997 221 22 233899999999888765
No 64
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.20 E-value=0.0028 Score=38.59 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=43.9
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|++..|.+ |++++.+|..+|++|+.+.++....+....+..+... ..+||-+..||.-+.
T Consensus 2 ~ly~~~~s~~------s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP----------~g~vP~L~~~g~~l~ 63 (73)
T cd03052 2 VLYHWTQSFS------SQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNP----------TGEVPVLIHGDNIIC 63 (73)
T ss_pred EEecCCCCcc------HHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCc----------CCCCCEEEECCEEEE
Confidence 5788888888 8999999999999999988862112222234554443 348999987776554
No 65
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.04 E-value=0.0024 Score=45.48 Aligned_cols=59 Identities=12% Similarity=-0.037 Sum_probs=43.0
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEE-eCCeeeecc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF-NEEDYCGVF 84 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIF-igd~yiGgy 84 (86)
+|....|.+ |.+++.+|..+|++|+.+++. .++. ... .+.. +..+||.+. .||..+++.
T Consensus 2 Ly~~~~sp~------~~kvr~~L~~~gl~~e~~~~~--~~~~-~~~-~~~n----------p~g~vP~l~~~~g~~l~es 61 (209)
T TIGR02182 2 LYIYDHCPF------CVRARMIFGLKNIPVEKHVLL--NDDE-ETP-IRMI----------GAKQVPILQKDDGRAMPES 61 (209)
T ss_pred eecCCCCCh------HHHHHHHHHHcCCCeEEEECC--CCcc-hhH-HHhc----------CCCCcceEEeeCCeEeccH
Confidence 678888898 999999999999999999986 3322 222 2222 234899997 777777653
No 66
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=96.99 E-value=0.0059 Score=36.26 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=42.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|....|.+ |.+++.+|..+|++|+.+.++....+....+..+.. +...+|-+..+|..+.
T Consensus 3 ~Ly~~~~s~~------s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------P~~~vP~l~~~g~~l~ 64 (76)
T cd03053 3 KLYGAAMSTC------VRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARN----------PFGQIPALEDGDLKLF 64 (76)
T ss_pred EEEeCCCChh------HHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhC----------CCCCCCEEEECCEEEE
Confidence 5777777887 999999999999999998886211122223344433 2347999987776553
No 67
>PRK10387 glutaredoxin 2; Provisional
Probab=96.98 E-value=0.0031 Score=43.80 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=43.0
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeE-EeCCeeeec
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQI-FNEEDYCGV 83 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQI-Figd~yiGg 83 (86)
.+|....|++ |.+++.+|+.+||+|+.+++. ..+. +.. .+.. +..+||-| .-||..+.+
T Consensus 2 ~Ly~~~~sp~------~~kv~~~L~~~gi~y~~~~~~--~~~~-~~~-~~~~----------p~~~VPvL~~~~g~~l~e 61 (210)
T PRK10387 2 KLYIYDHCPF------CVKARMIFGLKNIPVELIVLA--NDDE-ATP-IRMI----------GQKQVPILQKDDGSYMPE 61 (210)
T ss_pred EEEeCCCCch------HHHHHHHHHHcCCCeEEEEcC--CCch-hhH-HHhc----------CCcccceEEecCCeEecC
Confidence 5888889999 999999999999999999986 3322 211 2222 23489998 567776654
No 68
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.96 E-value=0.0054 Score=36.35 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=41.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|+.-.+++ |++++.+|+.+||+|+.+.++ .......+... . ++...+|-+..+|..+.
T Consensus 2 ~Ly~~~~~~~------~~~v~~~l~~~gi~~e~~~~~--~~~~~~~~~~~-~---------~p~~~vP~L~~~~~~l~ 61 (72)
T cd03039 2 KLTYFNIRGR------GEPIRLLLADAGVEYEDVRIT--YEEWPELDLKP-T---------LPFGQLPVLEIDGKKLT 61 (72)
T ss_pred EEEEEcCcch------HHHHHHHHHHCCCCcEEEEeC--HHHhhhhhhcc-C---------CcCCCCCEEEECCEEEE
Confidence 5777777777 999999999999999999986 22111111111 1 34568999988876654
No 69
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.96 E-value=0.0025 Score=43.58 Aligned_cols=47 Identities=19% Similarity=0.056 Sum_probs=35.4
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc-CCCCHhHHHHHHHhc
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT-EPGKENEKEFMQQNS 56 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~-~~~d~~~r~~M~~~~ 56 (86)
+.+|-..-|+. |.+|+.+|+++||+|+.+|+- +|-+.+....+.++.
T Consensus 3 i~iY~~p~Cst------~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 3 IIFYEKPGCAN------NARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNK 50 (126)
T ss_pred EEEEeCCCCHH------HHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHc
Confidence 45788888888 999999999999999999993 334445554444443
No 70
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.89 E-value=0.0091 Score=35.88 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=43.1
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|+...+|+ +.++..+|..+||+|+.+.++ . +....++.... +..++|-+..||.-+.
T Consensus 3 ~Ly~~~~~~~------~~~v~~~L~~~~i~~e~~~v~--~-~~~~~~~~~~~----------p~~~vP~l~~~~~~l~ 61 (73)
T cd03076 3 TLTYFPVRGR------AEAIRLLLADQGISWEEERVT--Y-EEWQESLKPKM----------LFGQLPCFKDGDLTLV 61 (73)
T ss_pred EEEEeCCcch------HHHHHHHHHHcCCCCEEEEec--H-HHhhhhhhccC----------CCCCCCEEEECCEEEE
Confidence 5788888888 999999999999999999997 2 22222333322 3458999988876554
No 71
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.88 E-value=0.0019 Score=42.22 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=30.3
Q ss_pred EEEcccCchhchHHHHHHHHHHHhCCCceEEEEccC-CCCHhHHHHHHHhcC
Q psy3969 7 ISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITE-PGKENEKEFMQQNSK 57 (86)
Q Consensus 7 y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~-~~d~~~r~~M~~~~g 57 (86)
|..+-|+. |.+|+.+|+++||+|+.+|+.. |-+.+...+|.+..|
T Consensus 1 Y~~~~C~t------~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCST------CRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HH------HHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHH------HHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 55666666 9999999999999999999962 335566666667665
No 72
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.80 E-value=0.012 Score=36.60 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=41.3
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHh----CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDS----KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~----k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
++++|...-|+- |..|+.+|.. .+++++.|||+ .|++ +.++-+ ..+|.+++++
T Consensus 1 ~l~l~~k~~C~L------C~~a~~~L~~~~~~~~~~l~~vDI~--~d~~----l~~~Y~-----------~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHL------CDEAKEILEEVAAEFPFELEEVDID--EDPE----LFEKYG-----------YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHH------HHHHHHHHHHCCTTSTCEEEEEETT--TTHH----HHHHSC-----------TSTSEEEETT
T ss_pred CEEEEcCCCCCh------HHHHHHHHHHHHhhcCceEEEEECC--CCHH----HHHHhc-----------CCCCEEEEcC
Confidence 457788888888 9999999994 55789999999 7777 445665 2699999999
No 73
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.67 E-value=0.01 Score=35.10 Aligned_cols=59 Identities=7% Similarity=-0.036 Sum_probs=41.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh--CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe-CCeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS--KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN-EEDYC 81 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~--k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi-gd~yi 81 (86)
.+|....|.+ |.+++.+|.. +|++|+.+.++ . .....++.+..+ ..++|.+.. ||..+
T Consensus 2 ~Ly~~~~s~~------~~~~~~~l~~~~~~i~~~~~~~~--~-~~~~~~~~~~~p----------~~~vP~l~~~~g~~l 62 (73)
T cd03049 2 KLLYSPTSPY------VRKVRVAAHETGLGDDVELVLVN--P-WSDDESLLAVNP----------LGKIPALVLDDGEAL 62 (73)
T ss_pred EEecCCCCcH------HHHHHHHHHHhCCCCCcEEEEcC--c-ccCChHHHHhCC----------CCCCCEEEECCCCEE
Confidence 5788888888 9999999999 89999999986 2 122234444332 347998874 55554
Q ss_pred e
Q psy3969 82 G 82 (86)
Q Consensus 82 G 82 (86)
.
T Consensus 63 ~ 63 (73)
T cd03049 63 F 63 (73)
T ss_pred E
Confidence 3
No 74
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.67 E-value=0.014 Score=34.95 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=42.2
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.+|.+..|.+ |.++..+|..+|++|+.+.++....+....++.+.. +...+|-+-.+|.-+
T Consensus 2 ~ly~~~~s~~------~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~----------p~~~vP~L~~~~~~l 62 (76)
T cd03050 2 KLYYDLMSQP------SRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN----------PFGKVPAIVDGDFTL 62 (76)
T ss_pred EEeeCCCChh------HHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC----------cCCCCCEEEECCEEE
Confidence 5788888888 999999999999999998886212222233455443 234789887766543
No 75
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.67 E-value=0.01 Score=31.09 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=39.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHH-----hCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILD-----SKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~-----~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
.+|+++-|+. |.++...|+ ..++.+..+|++ ..++....+.. .+ ...+|.+|+.+
T Consensus 2 ~~~~~~~c~~------c~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~----------~~~~P~~~~~~ 61 (69)
T cd01659 2 VLFYAPWCPF------CQALRPVLAELALLNKGVKFEAVDVD--EDPALEKELKR-YG----------VGGVPTLVVFG 61 (69)
T ss_pred EEEECCCChh------HHhhhhHHHHHHhhCCCcEEEEEEcC--CChHHhhHHHh-CC----------CccccEEEEEe
Confidence 4677777766 999999999 789999999998 55555544222 22 23678888775
No 76
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.66 E-value=0.017 Score=35.40 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=42.5
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
||.+|+...||+ +.++..+|...|++|+.+.++ ..++ ..++... . . .+...||-+-.||..+
T Consensus 1 ~~~Ly~~~~~~~------~~~v~~~l~~~gi~~e~~~v~--~~~~-~~~~~~~-~--~-----~~~g~vP~L~~~g~~l 62 (79)
T cd03077 1 KPVLHYFNGRGR------MESIRWLLAAAGVEFEEKFIE--SAED-LEKLKKD-G--S-----LMFQQVPMVEIDGMKL 62 (79)
T ss_pred CCEEEEeCCCCh------HHHHHHHHHHcCCCcEEEEec--cHHH-HHhhccc-c--C-----CCCCCCCEEEECCEEE
Confidence 688999999998 899999999999999998886 3221 1111111 0 0 1233789887777544
No 77
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.52 E-value=0.0057 Score=39.00 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=40.9
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhC-----CCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSK-----NIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k-----~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.+|++..|++ |..+.++|+.. +|.|..+|++ ..++.. ++.| -. .+|-+++|
T Consensus 15 ~i~~F~~~~C~~------C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a----~~~~--V~--------~vPt~vid 72 (89)
T cd03026 15 NFETYVSLSCHN------CPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEV----EERG--IM--------SVPAIFLN 72 (89)
T ss_pred EEEEEECCCCCC------cHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHH----HHcC--Cc--------cCCEEEEC
Confidence 467899999999 87777776553 7999999998 444332 2333 11 57888998
Q ss_pred Ceeee
Q psy3969 78 EDYCG 82 (86)
Q Consensus 78 d~yiG 82 (86)
|+-.+
T Consensus 73 G~~~~ 77 (89)
T cd03026 73 GELFG 77 (89)
T ss_pred CEEEE
Confidence 77553
No 78
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.50 E-value=0.021 Score=34.48 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=39.2
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
.+|... +++ |.+++.+|+.+||+|+.+.+.-...+..+.++.+... ..+||-+..+
T Consensus 3 ~Ly~~~-~~~------~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p----------~~~vP~l~~~ 58 (81)
T cd03048 3 TLYTHG-TPN------GFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINP----------NGRIPAIVDH 58 (81)
T ss_pred EEEeCC-CCC------hHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCc----------CCCCCEEEeC
Confidence 466555 377 9999999999999999877752122344466666553 3479998876
No 79
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.34 E-value=0.029 Score=34.30 Aligned_cols=58 Identities=14% Similarity=-0.013 Sum_probs=38.3
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
++++ +++.|.+.. .-.+.++.++...+++++.+|+. + .+++ ++.| -. .+|-+++||+.
T Consensus 2 ~I~v-~~~~C~~C~--~~~~~~~~~~~~~~i~~ei~~~~---~---~~~~-~~yg--v~--------~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCP--ELVQLLKEAAEELGIEVEIIDIE---D---FEEI-EKYG--VM--------SVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHH--HHHHHHHHHHHHTTEEEEEEETT---T---HHHH-HHTT---S--------SSSEEEETTEE
T ss_pred EEEE-eCCCCCCcH--HHHHHHHHHHHhcCCeEEEEEcc---C---HHHH-HHcC--CC--------CCCEEEECCEE
Confidence 4677 677789833 22334555677789999999986 2 2334 4444 22 79999999984
No 80
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=96.29 E-value=0.041 Score=32.63 Aligned_cols=62 Identities=16% Similarity=0.019 Sum_probs=43.6
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|.+..|.+ +.++..+|+.+|++|+.+++.....+....++.+... ...+|-+-.||.-+.
T Consensus 2 ~l~~~~~s~~------~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP----------~~~vP~L~~~~~~l~ 63 (73)
T cd03047 2 TIWGRRSSIN------VQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNP----------NGRVPVLEDGDFVLW 63 (73)
T ss_pred EEEecCCCcc------hHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCC----------CCCCCEEEECCEEEE
Confidence 5788888888 8999999999999999988862112233455555442 347999877765543
No 81
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.10 E-value=0.018 Score=37.50 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=43.8
Q ss_pred cEEEEEcccCchh--chHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 4 PYKISNTVRGVKG--VKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 4 ~~~y~ss~sgn~~--vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
+++|+...++... .=--|+|++..|..|||+|+.++|+....| ++..+... ...||-+..+|..+
T Consensus 6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p---~~~~~~nP----------~g~vPvL~~~~~~i 72 (91)
T cd03061 6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP---EDLKDLAP----------GTQPPFLLYNGEVK 72 (91)
T ss_pred EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCC---HHHHHhCC----------CCCCCEEEECCEEe
Confidence 5677765554333 334689999999999999999988632333 33445442 23799887777665
Q ss_pred e
Q psy3969 82 G 82 (86)
Q Consensus 82 G 82 (86)
.
T Consensus 73 ~ 73 (91)
T cd03061 73 T 73 (91)
T ss_pred c
Confidence 4
No 82
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.00 E-value=0.054 Score=31.87 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=39.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|++. .++ +.++..+|..+||+|+.+.++.........++.+.. +...+|-+..+|..+.
T Consensus 2 ~l~~~~-~~~------~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------p~~~vP~l~~~g~~l~ 62 (76)
T cd03046 2 TLYHLP-RSR------SFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN----------PLGKVPVLVDGDLVLT 62 (76)
T ss_pred EEEeCC-CCC------hHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC----------CCCCCCEEEECCEEEE
Confidence 356544 355 789999999999999998886211122334444433 2347999987776554
No 83
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.94 E-value=0.081 Score=32.33 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=38.3
Q ss_pred EEEEcccCchhchHHHHHH----HHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 6 KISNTVRGVKGVKKRQQRV----LMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a----~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.+|++-|++ |..+ +.++++.+++++.++|+ +++. ..+ .| - ..+|-|++||+-+
T Consensus 4 ~~~a~~C~~------C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~---a~~-~~--v--------~~vPti~i~G~~~ 60 (76)
T TIGR00412 4 QIYGTGCAN------CQMTEKNVKKAVEELGIDAEFEKVT---DMNE---ILE-AG--V--------TATPGVAVDGELV 60 (76)
T ss_pred EEECCCCcC------HHHHHHHHHHHHHHcCCCeEEEEeC---CHHH---HHH-cC--C--------CcCCEEEECCEEE
Confidence 356799999 8888 77999999999999997 3332 222 23 2 2689999987543
No 84
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.91 E-value=0.052 Score=32.64 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=42.5
Q ss_pred ccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 11 VRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 11 ~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
+++|.-.-..++++..+|..+||+|+.+.+.- .+.+...++.+... ...+|-+..+|.-+.
T Consensus 3 ~~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~-~~~~~~~~~~~~nP----------~g~vP~L~~~g~~l~ 63 (73)
T cd03043 3 VIGNKNYSSWSLRPWLLLKAAGIPFEEILVPL-YTPDTRARILEFSP----------TGKVPVLVDGGIVVW 63 (73)
T ss_pred EEcCCCCCHHHHHHHHHHHHcCCCCEEEEeCC-CCccccHHHHhhCC----------CCcCCEEEECCEEEE
Confidence 45666666779999999999999999988862 22223345555442 347999988876543
No 85
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=95.88 E-value=0.023 Score=34.68 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC-Ceeeec
Q psy3969 20 RQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE-EDYCGV 83 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig-d~yiGg 83 (86)
.|.+++.+|..+||+|+.+.++....+....++ . . ++...+|-+..| |..+.+
T Consensus 18 ~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~-~---------~p~~~vP~L~~~~~~~l~e 71 (84)
T cd03038 18 NVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-T-S---------GGFYTVPVIVDGSGEVIGD 71 (84)
T ss_pred hhHHHHHHHHhCCCCCeEEEecCCCcccccccc-c-C---------CCCceeCeEEECCCCEEeC
Confidence 399999999999999999888622222222233 2 2 234589999887 666654
No 86
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=95.74 E-value=0.032 Score=39.40 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=43.0
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
..+|....|++ |+++..+|..+||+|+.+.|+ .. ....+..+.. +..+||-+..||..+
T Consensus 11 ~~Ly~~~~s~~------~~rv~~~L~e~gl~~e~~~v~--~~-~~~~~~~~~n----------P~g~VPvL~~~g~~l 69 (211)
T PRK09481 11 MTLFSGPTDIY------SHQVRIVLAEKGVSVEIEQVE--KD-NLPQDLIDLN----------PYQSVPTLVDRELTL 69 (211)
T ss_pred eEEeCCCCChh------HHHHHHHHHHCCCCCEEEeCC--cc-cCCHHHHHhC----------CCCCCCEEEECCEEe
Confidence 35777778888 999999999999999999997 22 1223455544 233899998877543
No 87
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=95.59 E-value=0.094 Score=32.40 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=41.8
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhH-HHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENE-KEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~-r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
|.+||=-.+|+ |.++..+|..+||+|+.+.|+-...+.. ..+...... .. ..+...||-+..||..+
T Consensus 1 ~~l~y~~~~~~------~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~--~~---~~P~g~vP~L~~~g~~l 68 (82)
T cd03075 1 PTLGYWDIRGL------AQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKF--KL---GLDFPNLPYYIDGDVKL 68 (82)
T ss_pred CEEEEeCCccc------cHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccch--hc---CCcCCCCCEEEECCEEE
Confidence 56777778888 9999999999999999888862111111 122221110 00 01345899998887655
No 88
>PHA02125 thioredoxin-like protein
Probab=95.52 E-value=0.058 Score=32.67 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=35.0
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
+.+|+++-|+. |.+++.+|+. ++|+.++|+ .++. .++.++.+ -+ .+|.+.+|
T Consensus 2 iv~f~a~wC~~------Ck~~~~~l~~--~~~~~~~vd--~~~~--~~l~~~~~--v~--------~~PT~~~g 53 (75)
T PHA02125 2 IYLFGAEWCAN------CKMVKPMLAN--VEYTYVDVD--TDEG--VELTAKHH--IR--------SLPTLVNT 53 (75)
T ss_pred EEEEECCCCHh------HHHHHHHHHH--HhheEEeee--CCCC--HHHHHHcC--Cc--------eeCeEECC
Confidence 67899999999 9999999975 456666665 2232 23444444 22 67887754
No 89
>PRK15113 glutathione S-transferase; Provisional
Probab=95.44 E-value=0.066 Score=37.85 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=41.2
Q ss_pred EEEEEc--ccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 5 YKISNT--VRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 5 ~~y~ss--~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
.+|.+. .|.+ |.++..+|..+||+|+.+.|+-...+....++.+.. +...||.+-.||.-
T Consensus 7 ~Ly~~~~~~s~~------~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n----------P~g~VP~L~~~~~~ 68 (214)
T PRK15113 7 TLYSDAHFFSPY------VMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS----------LTRRVPTLQHDDFE 68 (214)
T ss_pred EEEeCCCCCCch------HHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC----------CCCCCCEEEECCEE
Confidence 456643 5777 899999999999999998886212222335566544 23379999877643
No 90
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=95.44 E-value=0.1 Score=30.91 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=39.9
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
.+|.+..|.+ |.++..+|..+|++|+.+++. .. ....+..+... . ...+|-+-.||.-+.
T Consensus 2 ~Ly~~~~sp~------~~~v~~~l~~~gl~~~~~~~~--~~-~~~~~~~~~~p--~-------~~~vP~l~~~~~~l~ 61 (74)
T cd03058 2 KLLGAWASPF------VLRVRIALALKGVPYEYVEED--LG-NKSELLLASNP--V-------HKKIPVLLHNGKPIC 61 (74)
T ss_pred EEEECCCCch------HHHHHHHHHHcCCCCEEEEeC--cc-cCCHHHHHhCC--C-------CCCCCEEEECCEEee
Confidence 4677777887 999999999999999999886 22 11122333221 0 137898877665443
No 91
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.22 E-value=0.081 Score=31.65 Aligned_cols=59 Identities=14% Similarity=0.099 Sum_probs=40.2
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC-Ceee
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE-EDYC 81 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig-d~yi 81 (86)
+|+.-.|++ +.+++-+|+.+||+|+.++|+. ..+....++.+.+ +..++|-+..+ |..+
T Consensus 3 Ly~~~~~~~------~~~~~~~l~~~gi~~~~~~v~~-~~~~~~~~~~~~n----------P~~~vP~L~~~~g~~l 62 (75)
T cd03044 3 LYTYPGNPR------SLKILAAAKYNGLDVEIVDFQP-GKENKTPEFLKKF----------PLGKVPAFEGADGFCL 62 (75)
T ss_pred EecCCCCcc------HHHHHHHHHHcCCceEEEeccc-ccccCCHHHHHhC----------CCCCCCEEEcCCCCEE
Confidence 566666777 9999999999999999999972 1112223444444 23479998864 5444
No 92
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=94.70 E-value=0.21 Score=29.64 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
+.+++.+|..+||+|+.+.+.....+....++.+..+ ...+|-+-.+
T Consensus 11 ~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np----------~~~vP~l~~~ 57 (77)
T cd03057 11 SLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINP----------KGQVPALVLD 57 (77)
T ss_pred hHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCC----------CCCCCEEEEC
Confidence 5678899999999999988762111223456666543 2378877665
No 93
>PLN02395 glutathione S-transferase
Probab=94.32 E-value=0.21 Score=34.84 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=40.0
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
+.+|. +.+++ .+|+.-+|..+||+|+.+.|.-...+....++.+... ...||-+-.+|..+
T Consensus 3 ~~ly~-~~~~~------~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP----------~g~vP~L~~~~~~l 63 (215)
T PLN02395 3 LKVYG-PAFAS------PKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQP----------FGVVPVIVDGDYKI 63 (215)
T ss_pred EEEEc-CCcCc------HHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCC----------CCCCCEEEECCEEE
Confidence 56665 45566 7999999999999999888751111122334555442 23799998777544
No 94
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.08 E-value=0.17 Score=41.22 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=39.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHH----HHHhC-CCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLM----ILDSK-NIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~----lL~~k-~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.+|+|..|.+ |-+|.+ +...+ +|+.+.||++ ..++.. ++-+ -. .||.||+|
T Consensus 479 ~i~v~~~~~C~~------Cp~~~~~~~~~~~~~~~i~~~~i~~~--~~~~~~----~~~~--v~--------~vP~~~i~ 536 (555)
T TIGR03143 479 NIKIGVSLSCTL------CPDVVLAAQRIASLNPNVEAEMIDVS--HFPDLK----DEYG--IM--------SVPAIVVD 536 (555)
T ss_pred EEEEEECCCCCC------cHHHHHHHHHHHHhCCCceEEEEECc--ccHHHH----HhCC--ce--------ecCEEEEC
Confidence 356899999999 655544 44555 8999999998 455433 2333 22 69999999
Q ss_pred Cee
Q psy3969 78 EDY 80 (86)
Q Consensus 78 d~y 80 (86)
|+.
T Consensus 537 ~~~ 539 (555)
T TIGR03143 537 DQQ 539 (555)
T ss_pred CEE
Confidence 863
No 95
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.97 E-value=0.16 Score=40.84 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=41.6
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHH-----hCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILD-----SKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~-----~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
.+.+|+|..|.+ |-+|.+.++ .-+|.++.||.+ ..|+..+ +-+ - -.||++|+|
T Consensus 119 ~i~~fv~~~Cp~------Cp~~v~~~~~~a~~~~~i~~~~id~~--~~~~~~~----~~~--v--------~~VP~~~i~ 176 (517)
T PRK15317 119 HFETYVSLSCHN------CPDVVQALNLMAVLNPNITHTMIDGA--LFQDEVE----ARN--I--------MAVPTVFLN 176 (517)
T ss_pred EEEEEEcCCCCC------cHHHHHHHHHHHHhCCCceEEEEEch--hCHhHHH----hcC--C--------cccCEEEEC
Confidence 356999999999 666655553 347889999998 6676544 333 2 279999999
Q ss_pred Ceeee
Q psy3969 78 EDYCG 82 (86)
Q Consensus 78 d~yiG 82 (86)
++...
T Consensus 177 ~~~~~ 181 (517)
T PRK15317 177 GEEFG 181 (517)
T ss_pred CcEEE
Confidence 97553
No 96
>PTZ00057 glutathione s-transferase; Provisional
Probab=93.91 E-value=0.4 Score=33.70 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=42.9
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHh--HHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKEN--EKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~--~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
++.+|+--.+|+ +.++..+|+.+||+|+.+.+.. ..++ ..+++.... .++...||-+..||..
T Consensus 4 ~~~L~y~~~~~~------~~~vrl~L~~~gi~ye~~~~~~-~~~~~~~~~~~~~~~--------~nP~g~vP~L~~~~~~ 68 (205)
T PTZ00057 4 EIVLYYFDARGK------AELIRLIFAYLGIEYTDKRFGE-NGDAFIEFKNFKKEK--------DTPFEQVPILEMDNII 68 (205)
T ss_pred ceEEEecCCCcc------hHHHHHHHHHcCCCeEEEeccc-cchHHHHHHhccccC--------CCCCCCCCEEEECCEE
Confidence 356787777888 8899999999999999998852 1111 111111100 1356689999998865
Q ss_pred e
Q psy3969 81 C 81 (86)
Q Consensus 81 i 81 (86)
+
T Consensus 69 l 69 (205)
T PTZ00057 69 F 69 (205)
T ss_pred E
Confidence 4
No 97
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=93.91 E-value=0.21 Score=29.89 Aligned_cols=44 Identities=16% Similarity=-0.077 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
|.+++.+|..+|++|+.+.+. .. ..+ +...+|-+-.||+.+.+.
T Consensus 20 ~~~v~~~L~~~gi~~~~~~~~--~~--------~~~----------p~g~vPvl~~~g~~l~eS 63 (75)
T cd03080 20 CLKVETFLRMAGIPYENKFGG--LA--------KRS----------PKGKLPFIELNGEKIADS 63 (75)
T ss_pred HHHHHHHHHHCCCCcEEeecC--cc--------cCC----------CCCCCCEEEECCEEEcCH
Confidence 999999999999999998886 21 222 334799999888877653
No 98
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.95 E-value=0.076 Score=42.75 Aligned_cols=58 Identities=17% Similarity=0.047 Sum_probs=40.9
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
.+.+|+|..|.+ |-.|.+.+.. -+|..+.||.+ ..|+.. ++-+ . -.||++|+|
T Consensus 120 ~i~~f~~~~Cp~------Cp~~v~~~~~~a~~~p~i~~~~id~~--~~~~~~----~~~~--v--------~~VP~~~i~ 177 (515)
T TIGR03140 120 HFETYVSLTCQN------CPDVVQALNQMALLNPNISHTMIDGA--LFQDEV----EALG--I--------QGVPAVFLN 177 (515)
T ss_pred EEEEEEeCCCCC------CHHHHHHHHHHHHhCCCceEEEEEch--hCHHHH----HhcC--C--------cccCEEEEC
Confidence 367999999999 6665555433 47888888887 566644 3333 1 279999999
Q ss_pred Ceeee
Q psy3969 78 EDYCG 82 (86)
Q Consensus 78 d~yiG 82 (86)
++..+
T Consensus 178 ~~~~~ 182 (515)
T TIGR03140 178 GEEFH 182 (515)
T ss_pred CcEEE
Confidence 97654
No 99
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=92.94 E-value=0.52 Score=35.13 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=44.6
Q ss_pred CcEEEEEcccCchhch--HHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 3 KPYKISNTVRGVKGVK--KRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK--~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
.+++|+...+.+..+- ..|+++...|..|||+|+.+.|+- ... -.+..+... ..+||-+-.||..
T Consensus 2 ~~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~--~~~-~~~fl~inP----------~g~vPvL~~~g~~ 68 (236)
T TIGR00862 2 EIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDL--KRK-PEDLQNLAP----------GTHPPFLTYNTEV 68 (236)
T ss_pred ceEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECC--CCC-CHHHHHHCc----------CCCCCEEEECCEE
Confidence 3577877655444332 679999999999999999988862 211 234444442 3379988777765
Q ss_pred ee
Q psy3969 81 CG 82 (86)
Q Consensus 81 iG 82 (86)
+.
T Consensus 69 l~ 70 (236)
T TIGR00862 69 KT 70 (236)
T ss_pred ee
Confidence 54
No 100
>PLN02473 glutathione S-transferase
Probab=92.85 E-value=0.49 Score=32.97 Aligned_cols=62 Identities=19% Similarity=0.114 Sum_probs=40.6
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
..+|.+..|++ +.++.-+|..+||+|+.+.+.-...+....+..+.. +...||-+..||.-+
T Consensus 3 ~kLy~~~~s~~------~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n----------P~g~vP~L~~~g~~l 64 (214)
T PLN02473 3 VKVYGQIKAAN------PQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ----------PFGQVPAIEDGDLKL 64 (214)
T ss_pred eEEecCCCCCc------hHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC----------CCCCCCeEEECCEEE
Confidence 35787777888 899999999999999988764101112222333333 223799998777554
No 101
>PRK05568 flavodoxin; Provisional
Probab=92.82 E-value=0.3 Score=32.25 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccC
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITE 42 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~ 42 (86)
|+++.|+|.|.+||++-- .+.+..-|++.|++.+.+|+.+
T Consensus 1 m~~~~IvY~S~~GnT~~~--a~~i~~~~~~~g~~v~~~~~~~ 40 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAM--ANLIAEGAKENGAEVKLLNVSE 40 (142)
T ss_pred CCeEEEEEECCCchHHHH--HHHHHHHHHHCCCeEEEEECCC
Confidence 889999999999995432 2333444567889999999973
No 102
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=92.78 E-value=0.47 Score=33.34 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=36.2
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN 76 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi 76 (86)
.+|++. +++ +.++.-+|..+||+|+.+.|+-...+....+..+.. +.-.||-+-.
T Consensus 3 ~Ly~~~-~~~------~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN----------P~gkVP~L~~ 57 (215)
T PRK13972 3 DLYFAP-TPN------GHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS----------PNNKIPAIVD 57 (215)
T ss_pred EEEECC-CCC------hHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC----------cCCCCCEEEe
Confidence 467654 677 889999999999999988875212222223444433 2337998875
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.54 E-value=0.61 Score=26.79 Aligned_cols=36 Identities=8% Similarity=0.193 Sum_probs=27.3
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHhH
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKENE 48 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~~ 48 (86)
.+|+++-|+. |..+..+|++ .++.|-.+|++ .+++.
T Consensus 15 l~~~~~~C~~------C~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~ 55 (93)
T cd02947 15 VDFWAPWCGP------CKAIAPVLEELAEEYPKVKFVKVDVD--ENPEL 55 (93)
T ss_pred EEEECCCChh------HHHhhHHHHHHHHHCCCceEEEEECC--CChhH
Confidence 4566776777 8888888877 89999999998 44443
No 104
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.11 E-value=0.51 Score=33.82 Aligned_cols=59 Identities=8% Similarity=0.096 Sum_probs=38.8
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
+.+|+++-|+. |..++.+|+. -.|.+..||+. .+++. .++.| -+ .+|.|++++
T Consensus 137 I~~F~a~~C~~------C~~~~~~l~~l~~~~~~i~~~~vD~~--~~~~~----~~~~~--V~--------~vPtl~i~~ 194 (215)
T TIGR02187 137 IEVFVTPTCPY------CPYAVLMAHKFALANDKILGEMIEAN--ENPDL----AEKYG--VM--------SVPKIVINK 194 (215)
T ss_pred EEEEECCCCCC------cHHHHHHHHHHHHhcCceEEEEEeCC--CCHHH----HHHhC--Cc--------cCCEEEEec
Confidence 46689999999 7777777664 25888888887 55543 33344 22 578888764
Q ss_pred e---eeecc
Q psy3969 79 D---YCGVF 84 (86)
Q Consensus 79 ~---yiGgy 84 (86)
. +.|..
T Consensus 195 ~~~~~~G~~ 203 (215)
T TIGR02187 195 GVEEFVGAY 203 (215)
T ss_pred CCEEEECCC
Confidence 3 45543
No 105
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.48 E-value=0.82 Score=29.75 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=33.1
Q ss_pred EEE-EEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe
Q psy3969 5 YKI-SNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN 76 (86)
Q Consensus 5 ~~y-~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi 76 (86)
.+| +++-|+. |+.++.+|+. .+|.|..+|++ .+++ +.++.+ -+ ++|-+++
T Consensus 26 vv~f~a~wC~~------C~~~~~~l~~la~~~~~i~~~~vd~d--~~~~----l~~~~~--v~--------~vPt~~i 81 (113)
T cd02975 26 VVFSSKEGCQY------CEVTKQLLEELSELSDKLKLEIYDFD--EDKE----KAEKYG--VE--------RVPTTIF 81 (113)
T ss_pred EEEeCCCCCCC------hHHHHHHHHHHHHhcCceEEEEEeCC--cCHH----HHHHcC--CC--------cCCEEEE
Confidence 345 4567888 7777777754 24789999998 5553 444454 22 6888887
No 106
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=90.61 E-value=0.7 Score=31.94 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=39.4
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhH-HHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENE-KEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~-r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
+|....|++ +.++..+|..+||+|+.+.++-....+. -.++.+.. +..++|-+..||..+
T Consensus 2 Ly~~~~s~~------~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n----------P~g~vP~L~~~g~~l 62 (210)
T TIGR01262 2 LYSYWRSSC------SYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN----------PQGLVPTLDIDGEVL 62 (210)
T ss_pred cccCCCCCc------hHHHHHHHHHCCCCceEEecccccccccCChhhhhcC----------CCCcCCEEEECCEEe
Confidence 454556667 8899999999999999988761001111 13344433 345899998877654
No 107
>PRK07308 flavodoxin; Validated
Probab=90.61 E-value=0.67 Score=31.05 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=30.9
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.|+.|.|.|.+||++ +=..++..-|...|++.+..|++
T Consensus 1 m~~~~IvY~S~tGnTe--~iA~~ia~~l~~~g~~~~~~~~~ 39 (146)
T PRK07308 1 MALAKIVYASMTGNTE--EIADIVADKLRELGHDVDVDECT 39 (146)
T ss_pred CceEEEEEECCCchHH--HHHHHHHHHHHhCCCceEEEecc
Confidence 8899999999999954 44555556678889988888886
No 108
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=90.17 E-value=1.4 Score=27.34 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=26.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh------CCCceEEEEccCCCCHhH
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS------KNIDYTVIDITEPGKENE 48 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~------k~I~f~eiDI~~~~d~~~ 48 (86)
.+|+++-|+. |..+...|+. .++.|..+|++ .+++.
T Consensus 18 v~f~a~~C~~------C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l 59 (97)
T cd02949 18 VLYTSPTCGP------CRTLKPILNKVIDEFDGAVHFVEIDID--EDQEI 59 (97)
T ss_pred EEEECCCChh------HHHHHHHHHHHHHHhCCceEEEEEECC--CCHHH
Confidence 4677788888 7777777765 45889999998 56653
No 109
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=89.93 E-value=0.74 Score=27.35 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHH-HHHHHhcCCCCCCCCCCCCCCCCeEEe-CCeeeec
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEK-EFMQQNSKATPSDSTVKSNPLPPQIFN-EEDYCGV 83 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r-~~M~~~~g~~~~~~~~~~~~tvPQIFi-gd~yiGg 83 (86)
++|+.-+|..+|++|+..-+....++..+ .++.+.++ ..+||-+.. +|..+.+
T Consensus 5 a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p----------~~~VP~L~~~~g~vi~e 59 (70)
T PF13409_consen 5 AHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP----------RGKVPVLVDPDGTVINE 59 (70)
T ss_dssp HHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST----------T-SSSEEEETTTEEEES
T ss_pred hHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc----------CeEEEEEEECCCCEeeC
Confidence 78999999999999997666311233332 45666664 348999997 6776654
No 110
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=89.31 E-value=1.3 Score=30.46 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=39.8
Q ss_pred CCCcEEEEEcccCc-----hhchHH---HHHHHHHHHhCCCceEEEEccCCCCHhHHHH------HHHhcCCCCCCCCCC
Q psy3969 1 MKKPYKISNTVRGV-----KGVKKR---QQRVLMILDSKNIDYTVIDITEPGKENEKEF------MQQNSKATPSDSTVK 66 (86)
Q Consensus 1 ~~~~~~y~ss~sgn-----~~vK~~---q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~------M~~~~g~~~~~~~~~ 66 (86)
|+|++||=...+=+ +.|.+. -..+..-|+.+||+.+..+++ .+|.+..+ +.+..|
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~--~~P~aF~~n~~V~~~L~~~G--------- 69 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLA--QNPQAFVENPEVNQLLQTEG--------- 69 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETT--T-TTHHHHSHHHHHHHHHH----------
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccc--cCHHHHHhCHHHHHHHHHcC---------
Confidence 88888986554221 233443 445667778999999999999 77776542 233333
Q ss_pred CCCCCCeEEeCCeee
Q psy3969 67 SNPLPPQIFNEEDYC 81 (86)
Q Consensus 67 ~~~tvPQIFigd~yi 81 (86)
..-.|-+|+||+-+
T Consensus 70 -~e~LPitlVdGeiv 83 (123)
T PF06953_consen 70 -AEALPITLVDGEIV 83 (123)
T ss_dssp -GGG-SEEEETTEEE
T ss_pred -cccCCEEEECCEEE
Confidence 22579999999865
No 111
>PRK05569 flavodoxin; Provisional
Probab=88.57 E-value=1.2 Score=29.33 Aligned_cols=39 Identities=15% Similarity=0.041 Sum_probs=29.0
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.|+.|+|.|.+||++ +=.+.+..-|.+.|++.+.+++.
T Consensus 1 m~ki~iiY~S~tGnT~--~iA~~i~~~~~~~g~~v~~~~~~ 39 (141)
T PRK05569 1 MKKVSIIYWSCGGNVE--VLANTIADGAKEAGAEVTIKHVA 39 (141)
T ss_pred CCeEEEEEECCCCHHH--HHHHHHHHHHHhCCCeEEEEECC
Confidence 8899999999999953 33444455566688888888886
No 112
>PRK10357 putative glutathione S-transferase; Provisional
Probab=88.13 E-value=1.3 Score=30.58 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=26.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.+|.+..|.+ ..++..+|+.+||+|+.+.++
T Consensus 2 ~Ly~~~~s~~------~~~v~~~L~~~gv~ye~~~~~ 32 (202)
T PRK10357 2 KLIGSYTSPF------VRKISILLLEKGITFEFVNEL 32 (202)
T ss_pred eeecCCCCch------HHHHHHHHHHcCCCCeEEecC
Confidence 4677777887 889999999999999998886
No 113
>PRK06756 flavodoxin; Provisional
Probab=87.65 E-value=1.3 Score=29.70 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.|+.|+|.|.+||++-- ...+..-|+..|++.+.+|+.
T Consensus 1 mmkv~IiY~S~tGnTe~v--A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEM--ADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred CceEEEEEECCCchHHHH--HHHHHHHHhhcCCeEEEeehh
Confidence 778999999999996543 344445677889998888886
No 114
>PRK09004 FMN-binding protein MioC; Provisional
Probab=86.61 E-value=1.5 Score=30.00 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=29.2
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+|+.|+|.|.+||.+-=-+ ++...|.+.|++.+.+|+.
T Consensus 1 M~~i~I~ygS~tGnae~~A~--~l~~~~~~~g~~~~~~~~~ 39 (146)
T PRK09004 1 MADITLISGSTLGGAEYVAD--HLAEKLEEAGFSTETLHGP 39 (146)
T ss_pred CCeEEEEEEcCchHHHHHHH--HHHHHHHHcCCceEEeccC
Confidence 89999999999999654433 3334567788888877765
No 115
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=86.55 E-value=3.8 Score=25.40 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=27.4
Q ss_pred EEEEEcccCchhchHHH----HHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 5 YKISNTVRGVKGVKKRQ----QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q----~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
..|+++-|+..+.-... ..+...+.. ++.|-.||++ .++....++.++.+
T Consensus 16 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~--~~~~~~~~~~~~~~ 69 (104)
T cd02953 16 VDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWT--KNDPEITALLKRFG 69 (104)
T ss_pred EEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecC--CCCHHHHHHHHHcC
Confidence 35677777773332211 123344443 7888888987 44443445555554
No 116
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=85.93 E-value=1.5 Score=29.79 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.|+-|||+|.+||++.- ...+...|.+-+.+. .+++.
T Consensus 1 M~ki~Ivy~S~tGnTe~v--A~~i~~~l~~~~~~~-~~~~~ 38 (151)
T COG0716 1 MMKILIVYGSRTGNTEKV--AEIIAEELGADGFEV-DIDIR 38 (151)
T ss_pred CCeEEEEEEcCCCcHHHH--HHHHHHHhccCCceE-EEeec
Confidence 899999999999996543 566677777777666 55554
No 117
>PLN02378 glutathione S-transferase DHAR1
Probab=85.64 E-value=3.1 Score=29.41 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
|+|+..+|+.+|++|+.+.|+-...+ .+..+.. +..+||-+-.||..+
T Consensus 23 ~~rv~~~L~e~gl~~e~~~v~~~~~~---~~~l~in----------P~G~VPvL~~~~~~l 70 (213)
T PLN02378 23 SQRALLTLEEKSLTYKIHLINLSDKP---QWFLDIS----------PQGKVPVLKIDDKWV 70 (213)
T ss_pred hHHHHHHHHHcCCCCeEEEeCcccCC---HHHHHhC----------CCCCCCEEEECCEEe
Confidence 99999999999999997777521111 1344433 334899887776543
No 118
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.57 E-value=2.5 Score=29.49 Aligned_cols=56 Identities=9% Similarity=0.161 Sum_probs=40.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCH-hHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKE-NEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~-~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
.+|.+..|++ |.++.-+|..+||+|+.+.|+ ... ....+..+.. +...||-+=.+|
T Consensus 2 ~L~~~~~sp~------~~kv~l~l~e~g~~ye~~~v~--~~~~~~~~~~~~~n----------P~gkVPvL~~~~ 58 (211)
T COG0625 2 KLYGSPTSPY------SRKVRLALEEKGLPYEIVLVD--LDAEQKPPDFLALN----------PLGKVPALVDDD 58 (211)
T ss_pred eeecCCCCcc------hHHHHHHHHHcCCCceEEEeC--cccccCCHHHHhcC----------CCCCCCEEeeCC
Confidence 4677777788 999999999999999999997 332 3334444444 234789776554
No 119
>PRK08105 flavodoxin; Provisional
Probab=85.29 E-value=1.7 Score=29.87 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=29.2
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+|+.|+|.|.+||.+---+ ++...|...|++...+++.
T Consensus 1 m~~i~I~YgS~tGnte~~A~--~l~~~l~~~g~~~~~~~~~ 39 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAE--EAEAILTAQGHEVTLFEDP 39 (149)
T ss_pred CCeEEEEEEcCchHHHHHHH--HHHHHHHhCCCceEEechh
Confidence 89999999999999664433 3345566788888777765
No 120
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=84.84 E-value=1.1 Score=30.64 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=21.1
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|||+|.||| .+++++..|++-..+.++
T Consensus 1 IvY~S~TGN---------te~fv~~lg~~~~~i~~~ 27 (125)
T TIGR00333 1 IYFSSKTGN---------VQRFVEKLGFQHIRIPVD 27 (125)
T ss_pred CEEEccccc---------HHHHHHHcCCCcEEeecC
Confidence 689999999 455688899886556665
No 121
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=84.02 E-value=3.7 Score=30.34 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=36.1
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|++..+++...||+..-.+...+++.+|++.++++..+-.+
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~ 41 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW 41 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec
Confidence 88999999999999887877888999999999999876655
No 122
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.70 E-value=6.7 Score=26.56 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=49.4
Q ss_pred EcccCchhchHHHHHHHHHHHhC----CCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeec
Q psy3969 9 NTVRGVKGVKKRQQRVLMILDSK----NIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGV 83 (86)
Q Consensus 9 ss~sgn~~vK~~q~~a~~lL~~k----~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGg 83 (86)
+|+-+-+.-|.--.....+|+.| ...|+.|||..|.+++.-..|.++.- +.----|-|-++|++++.
T Consensus 17 ASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~--------~dey~YPlivvedeiVae 87 (106)
T COG4837 17 ASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIE--------QDEYFYPLIVVEDEIVAE 87 (106)
T ss_pred HHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHh--------cccccceEEEEcceEeec
Confidence 45555556666666777777765 45678999986778888889999884 133478999999999873
No 123
>KOG0406|consensus
Probab=82.59 E-value=5.2 Score=30.30 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=44.2
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
+.+|.+-.|.+ -+||..-|+.|||+|+.+.++-.+.++ .+.+... ...-||-+=.+|+-++
T Consensus 10 vrL~~~w~sPf------a~R~~iaL~~KgI~yE~veedl~~Ks~---~ll~~np---------~hkKVPvL~Hn~k~i~ 70 (231)
T KOG0406|consen 10 VKLLGMWFSPF------AQRVRIALKLKGIPYEYVEEDLTNKSE---WLLEKNP---------VHKKVPVLEHNGKPIC 70 (231)
T ss_pred EEEEEeecChH------HHHHHHHHHhcCCceEEEecCCCCCCH---HHHHhcc---------ccccCCEEEECCceeh
Confidence 67888889999 899999999999999998887323333 3334332 1236898888887654
No 124
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=82.22 E-value=8.5 Score=23.02 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCC-CCCCeEEeC-Ceee
Q psy3969 20 RQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSN-PLPPQIFNE-EDYC 81 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~-~tvPQIFig-d~yi 81 (86)
++.+++.+|+.+||+|+.+.++-...+....+..+... . ..+|-+=.+ |..+
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p----------~~g~vP~l~~~~~~~l 64 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINP----------MFGKVPALEDGDGFVL 64 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTT----------TSSSSSEEEETTTEEE
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhccc----------ccceeeEEEECCCCEE
Confidence 48999999999999999987762134433355555442 1 268988877 5443
No 125
>PRK06703 flavodoxin; Provisional
Probab=82.16 E-value=3.5 Score=27.60 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=28.5
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.++.|+|.|.+||.+---+ .+..-|...|++.+.+|+.
T Consensus 1 mmkv~IiY~S~tGnT~~iA~--~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIAD--LIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHH--HHHHHHHhcCCceEEEehh
Confidence 77899999999999654332 3334467888888888876
No 126
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=82.06 E-value=4.7 Score=30.29 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 20 RQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.|+++..+|+.+||+|+.+.|+-...+ .+..+.+ +...||-+-.+|..+
T Consensus 75 ~s~rV~i~L~ekgi~ye~~~vdl~~~~---~~fl~iN----------P~GkVPvL~~d~~~L 123 (265)
T PLN02817 75 FCQRVLLTLEEKHLPYDMKLVDLTNKP---EWFLKIS----------PEGKVPVVKLDEKWV 123 (265)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCcCcCC---HHHHhhC----------CCCCCCEEEECCEEE
Confidence 399999999999999998777621111 2334433 234799998887655
No 127
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=81.95 E-value=3.9 Score=30.07 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=37.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhC------CCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSK------NIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k------~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
.+++|+|+--.. ..+....+++.||+.. +|.++.||.. .+|+..++..+..|
T Consensus 28 ~i~~~~s~~l~~-~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~--~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 28 TITVYFSRELPP-ELSPLRKQVRDLLDEYARYSPGKIKVEFIDPD--ENPSEAEEKAKEYG 85 (271)
T ss_pred EEEEEECCCcch-hhhHHHHHHHHHHHHHHHhCCCceEEEEECCC--CChHHHHHHHHhcC
Confidence 356777762222 5677788888888875 8999999996 67777776666666
No 128
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=81.55 E-value=6.8 Score=26.12 Aligned_cols=66 Identities=12% Similarity=0.234 Sum_probs=38.4
Q ss_pred cccCchhchHHHHHHHHHHHh----CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeec
Q psy3969 10 TVRGVKGVKKRQQRVLMILDS----KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGV 83 (86)
Q Consensus 10 s~sgn~~vK~~q~~a~~lL~~----k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGg 83 (86)
|+-+-+.=|.--.....+|.. ....|+.|||..|.+.+..+++.++.-. .----|-|.++|+++|.
T Consensus 11 SCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~e--------de~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 11 SCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILE--------DELFYPLVVINDEIVAE 80 (93)
T ss_dssp GGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHT--------TSS-SSEEEETTEEEEE
T ss_pred hhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHh--------cccccceEEECCEEEec
Confidence 343434444444555555555 4578899999866666566667777631 22368999999999983
No 129
>PRK11914 diacylglycerol kinase; Reviewed
Probab=81.29 E-value=5 Score=30.00 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=40.7
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHh
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~ 55 (86)
|++..+++.-.||+-.-.+.-.++...|++.|++|..+-.+ ...++.+..++.
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~--~~~~~~~~a~~~ 60 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT--DAHDARHLVAAA 60 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeC--CHHHHHHHHHHH
Confidence 78899999999999887777888889999999999887665 333444444443
No 130
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=81.15 E-value=4 Score=26.68 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=28.8
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccC
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITE 42 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~ 42 (86)
|+|.|.+||.+ +=.+++...|.++|++.+.+|+.+
T Consensus 1 I~Y~S~tG~te--~~A~~ia~~l~~~g~~~~~~~~~~ 35 (143)
T PF00258_consen 1 IVYGSMTGNTE--KMAEAIAEGLRERGVEVRVVDLDD 35 (143)
T ss_dssp EEEETSSSHHH--HHHHHHHHHHHHTTSEEEEEEGGG
T ss_pred CEEECCchhHH--HHHHHHHHHHHHcCCceeeechhh
Confidence 78999999976 345567778889999999999983
No 131
>PRK11752 putative S-transferase; Provisional
Probab=80.99 E-value=7.4 Score=28.77 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=35.3
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhC------CCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSK------NIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k------~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
.+|+ ..|++ +.++.-+|+.+ |++|+.+.|.-...+....+..+.. +..+||-+-.+|
T Consensus 46 ~Ly~-~~s~~------~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN----------P~GkVP~Lv~~d 108 (264)
T PRK11752 46 QLYS-LGTPN------GQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN----------PNSKIPALLDRS 108 (264)
T ss_pred EEec-CCCCc------hHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC----------CCCCCCEEEeCC
Confidence 3444 55777 89999999886 8889887775101111123444433 344899997654
No 132
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=80.43 E-value=3.6 Score=28.30 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=31.9
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+|-|-+|+.++..++ .-..++.++|++.||.++.|...
T Consensus 35 dpavQIs~~~~g~~~-~~~~~v~~~L~~~gI~~ksi~~~ 72 (127)
T PRK10629 35 ESTLAIRAVHQGASL-PDGFYVYQHLDANGIHIKSITPE 72 (127)
T ss_pred CceEEEecCCCCCcc-chHHHHHHHHHHCCCCcceEEee
Confidence 577888888555666 88899999999999999988665
No 133
>PRK10542 glutathionine S-transferase; Provisional
Probab=80.33 E-value=5 Score=27.45 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=34.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCH-hHHHHHHHhcCCCCCCCCCCCCCCCCeEEe-CCee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKE-NEKEFMQQNSKATPSDSTVKSNPLPPQIFN-EEDY 80 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~-~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi-gd~y 80 (86)
.+|++..| + ..++.-+|..+||+|+.+.|+-...+ ..-.+..+.. +...||-+=. ||..
T Consensus 2 ~l~~~~~s-~------~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~n----------P~g~vPvL~~~~g~~ 62 (201)
T PRK10542 2 KLFYKPGA-C------SLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAIN----------PKGQVPALLLDDGTL 62 (201)
T ss_pred ceeecccH-H------HHHHHHHHHHcCCCceEEEeecccccccCChHHHHhC----------cCCCCCeEEeCCCcE
Confidence 35665433 4 55677899999999998877521111 1123455544 2337898754 4433
No 134
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=80.20 E-value=3.5 Score=29.22 Aligned_cols=39 Identities=13% Similarity=0.079 Sum_probs=30.1
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHh-CCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDS-KNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~-k~I~f~eiDI~ 41 (86)
|.|+.|.|.|.+||. ++=-+.+..-|++ .|++.+.++|.
T Consensus 1 M~kilIvy~S~~G~T--~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHI--ETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHH--HHHHHHHHHHHhhcCCcEEEEEecc
Confidence 778999999988873 4444556666676 89999999996
No 135
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=80.18 E-value=7.6 Score=24.48 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=36.9
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhC---CCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSK---NIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k---~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
.+|+++-+.+ -...-...+++++.. ..+.+.|||. .+|+.-+. .+.= -.+.=+.-.+.|-|.|+|
T Consensus 5 ~Lyv~g~tp~--S~~ai~nl~~i~e~~l~~~~~LeVIDv~--~~P~lAe~--~~iv--AtPtLvk~~P~P~rrliG 72 (72)
T cd02978 5 RLYVAGRTPK--SERALQNLKRILEELLGGPYELEVIDVL--KQPQLAEE--DKIV--ATPTLVKVLPPPRRRLIG 72 (72)
T ss_pred EEEECCCCch--HHHHHHHHHHHHHHhcCCcEEEEEEEcc--cCHhHHhh--CCEE--EechhhhcCCCCceEecC
Confidence 3566655333 344555666666664 6678999999 78886653 1111 011111224567777775
No 136
>KOG4244|consensus
Probab=80.05 E-value=1.9 Score=33.66 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=39.1
Q ss_pred cccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeeccC
Q psy3969 10 TVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85 (86)
Q Consensus 10 s~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgyd 85 (86)
+.|.+ |.++.-+|...+|+||.++=. |..++. +-|.|-|=.||+|+-+.|
T Consensus 59 nLSPf------ClKvEt~lR~~~IpYE~~~~~----------~~~rSr----------~G~lPFIELNGe~iaDS~ 108 (281)
T KOG4244|consen 59 NLSPF------CLKVETFLRAYDIPYEIVDCS----------LKRRSR----------NGTLPFIELNGEHIADSD 108 (281)
T ss_pred CCChH------HHHHHHHHHHhCCCceecccc----------ceeecc----------CCCcceEEeCCeeccccH
Confidence 55666 999999999999999998876 433331 128999999999997754
No 137
>PRK13337 putative lipid kinase; Reviewed
Probab=80.04 E-value=5.9 Score=29.73 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
|++..+++.-.||+..-.+.-..+...|.+.+++|+.+... ...++.+.+++..
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~--~~~~a~~~a~~~~ 54 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATT--GPGDATLAAERAV 54 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEec--CCCCHHHHHHHHH
Confidence 78899999999999776666677888899999999988886 3444455455443
No 138
>PRK02551 flavoprotein NrdI; Provisional
Probab=79.16 E-value=2.7 Score=29.83 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=13.4
Q ss_pred CCCcEEEEEcccCc
Q psy3969 1 MKKPYKISNTVRGV 14 (86)
Q Consensus 1 ~~~~~~y~ss~sgn 14 (86)
|+.+.|||+|.|||
T Consensus 1 ~~~~~I~Y~S~TGN 14 (154)
T PRK02551 1 MKTITLVYISLSGN 14 (154)
T ss_pred CCceEEEEEeCChh
Confidence 88899999999999
No 139
>KOG1695|consensus
Probab=78.65 E-value=7.6 Score=28.70 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCee
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDY 80 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~y 80 (86)
|..+.++|-.+.|- +.-++.||.-.|++|+++.|+ .... +..+...+. =..+|-+=+||..
T Consensus 1 m~~ykL~Yf~~RG~------ae~iR~lf~~a~v~fEd~r~~--~~~~-w~~~K~~~p----------fgqlP~l~vDg~~ 61 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGL------AEPIRLLFAYAGVSFEDKRIT--MEDA-WEELKDKMP----------FGQLPVLEVDGKK 61 (206)
T ss_pred CCceEEEecCcchh------HHHHHHHHHhcCCCcceeeec--cccc-hhhhcccCC----------CCCCCEEeECCEe
Confidence 66777888888887 999999999999999999998 2322 555555441 2268888888876
Q ss_pred ee
Q psy3969 81 CG 82 (86)
Q Consensus 81 iG 82 (86)
+.
T Consensus 62 i~ 63 (206)
T KOG1695|consen 62 LV 63 (206)
T ss_pred ec
Confidence 64
No 140
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=74.64 E-value=13 Score=25.67 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCC-CCCCCCCCCCCeEEeCCe
Q psy3969 20 RQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPS-DSTVKSNPLPPQIFNEED 79 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~-~~~~~~~~tvPQIFigd~ 79 (86)
...++.+.|+.+||..-.|=|.. .+ ...|.+-+..... =---+-..+.||+|++|+
T Consensus 128 ~~~~~~~~~~~~gi~i~~vgig~-~~---~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 128 GIEKAVNEADHLGIKIFFVAVGS-QN---EEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred hHHHHHHHHHHCCCEEEEEecCc-cc---hHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 34556667889999988888862 33 3345554421010 000022568899999986
No 141
>PRK09271 flavodoxin; Provisional
Probab=74.24 E-value=8 Score=26.47 Aligned_cols=37 Identities=3% Similarity=0.019 Sum_probs=25.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+.|.|.|.+||.+ +=..++...|...|++.+..++.
T Consensus 2 kv~IvY~S~tGnTe--~~A~~ia~~l~~~g~~v~~~~~~ 38 (160)
T PRK09271 2 RILLAYASLSGNTR--EVAREIEERCEEAGHEVDWVETD 38 (160)
T ss_pred eEEEEEEcCCchHH--HHHHHHHHHHHhCCCeeEEEecc
Confidence 66778888999954 33445556678888876655553
No 142
>KOG3029|consensus
Probab=73.91 E-value=8.4 Score=30.91 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=44.1
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCe
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEED 79 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~ 79 (86)
+..+|==-.|.+ |-+++.+|+=+||+|+++.|. |-.|++.+=-+- .-||-+-+.|+
T Consensus 90 ~l~LyQyetCPF------CcKVrAFLDyhgisY~VVEVn----pV~r~eIk~Ssy-----------kKVPil~~~Ge 145 (370)
T KOG3029|consen 90 DLVLYQYETCPF------CCKVRAFLDYHGISYAVVEVN----PVLRQEIKWSSY-----------KKVPILLIRGE 145 (370)
T ss_pred eEEEEeeccCch------HHHHHHHHhhcCCceEEEEec----chhhhhcccccc-----------ccccEEEeccc
Confidence 355666677888 999999999999999999996 888888665443 25898888543
No 143
>PHA02278 thioredoxin-like protein
Probab=73.44 E-value=17 Score=23.51 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=35.3
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh------CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS------KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~------k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
..||++-||. |.....+|+. ..+.|..|||+ .++....++.++.+ -+ +-+|. -+|-+|
T Consensus 19 V~F~A~WCgp------Ck~m~p~l~~l~~~~~~~~~~~~vdvd--~~~~d~~~l~~~~~--I~-----~iPT~-i~fk~G 82 (103)
T PHA02278 19 VMITQDNCGK------CEILKSVIPMFQESGDIKKPILTLNLD--AEDVDREKAVKLFD--IM-----STPVL-IGYKDG 82 (103)
T ss_pred EEEECCCCHH------HHhHHHHHHHHHhhhcCCceEEEEECC--ccccccHHHHHHCC--Cc-----cccEE-EEEECC
Confidence 4588899999 6655544433 23678999998 44322333455554 22 22333 456677
Q ss_pred eee
Q psy3969 79 DYC 81 (86)
Q Consensus 79 ~yi 81 (86)
+-+
T Consensus 83 ~~v 85 (103)
T PHA02278 83 QLV 85 (103)
T ss_pred EEE
Confidence 755
No 144
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=72.68 E-value=16 Score=22.09 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=39.3
Q ss_pred cccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeeccC
Q psy3969 10 TVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85 (86)
Q Consensus 10 s~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgyd 85 (86)
...|-+.+--.|-++..+|+-.|++|+.+... ++. .+. +...|-|-.+++-++|++
T Consensus 8 ~~~g~ps~sp~clk~~~~Lr~~~~~~~v~~~~---n~~-------~sp----------~gkLP~l~~~~~~i~d~~ 63 (73)
T cd03078 8 GDWGLPSVDPECLAVLAYLKFAGAPLKVVPSN---NPW-------RSP----------TGKLPALLTSGTKISGPE 63 (73)
T ss_pred CCCCCCcCCHHHHHHHHHHHcCCCCEEEEecC---CCC-------CCC----------CCccCEEEECCEEecChH
Confidence 33444555566999999999999999776443 321 111 125899999999998874
No 145
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=71.54 E-value=10 Score=24.89 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=30.6
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+|-|-+|..++...+-.. .++..+|++.||.++.|...
T Consensus 31 ~pAvqIs~~~~~~~~~~~-~~v~~~L~~~~I~~k~i~~~ 68 (101)
T PF13721_consen 31 DPAVQISASSAGVQLPDA-FQVEQALKAAGIAVKSIEQE 68 (101)
T ss_pred CCcEEEecCCCCccCChH-HHHHHHHHHCCCCcceEEee
Confidence 577888888766666554 69999999999999987765
No 146
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=71.39 E-value=12 Score=25.06 Aligned_cols=48 Identities=10% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
-..|..+|+..+|.|-.||++ .+++.. ++-| -+ +-+|. -+|.+|+-+.
T Consensus 54 ~~~aa~~l~~~~v~~~kVD~d--~~~~La----~~~~--I~-----~iPTl-~lfk~G~~v~ 101 (120)
T cd03065 54 LELAAQVLEDKGIGFGLVDSK--KDAKVA----KKLG--LD-----EEDSI-YVFKDDEVIE 101 (120)
T ss_pred HHHHHHHhhcCCCEEEEEeCC--CCHHHH----HHcC--Cc-----cccEE-EEEECCEEEE
Confidence 356778888999999999999 566543 3444 22 22344 5688887553
No 147
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=71.07 E-value=23 Score=22.18 Aligned_cols=40 Identities=5% Similarity=0.176 Sum_probs=25.0
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHhHHHHH
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKENEKEFM 52 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~~r~~M 52 (86)
.-||++-|+. |+...-.|+. .++.|-.||++ .+++.++.+
T Consensus 20 v~F~a~wC~~------C~~~~p~l~~la~~~~~v~~~~vd~d--~~~~~~~l~ 64 (103)
T cd02985 20 LEFALKHSGP------SVKIYPTMVKLSRTCNDVVFLLVNGD--ENDSTMELC 64 (103)
T ss_pred EEEECCCCHh------HHHHhHHHHHHHHHCCCCEEEEEECC--CChHHHHHH
Confidence 3467777887 5555444443 47888889987 555444443
No 148
>PRK13055 putative lipid kinase; Reviewed
Probab=71.04 E-value=13 Score=28.55 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=36.0
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|++..+++.-.||+..-++.-.+++.+|.+.|++|+..-.+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~ 42 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTT 42 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 67889999999999888888889999999999998876555
No 149
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=70.29 E-value=8.9 Score=26.93 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=24.8
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+.|.|+|.+||+ ++=.+++..-|.. |++.+.+++.
T Consensus 2 kilIvY~S~~G~T--~~iA~~Ia~~l~~-g~~v~~~~~~ 37 (177)
T PRK11104 2 KTLILYSSRDGQT--RKIASYIASELKE-GIQCDVVNLH 37 (177)
T ss_pred cEEEEEECCCChH--HHHHHHHHHHhCC-CCeEEEEEhh
Confidence 6778888899994 3334455556666 7777777776
No 150
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=69.10 E-value=17 Score=22.52 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
|.++.-+|+..|++|+.+++. . .+. .+ +...||-|=.||+-+++.
T Consensus 20 ~~kv~~~L~elglpye~~~~~--~-~~~------~~----------P~GkVP~L~~dg~vI~eS 64 (74)
T cd03079 20 CLAVQTFLKMCNLPFNVRCRA--N-AEF------MS----------PSGKVPFIRVGNQIVSEF 64 (74)
T ss_pred HHHHHHHHHHcCCCcEEEecC--C-ccc------cC----------CCCcccEEEECCEEEeCH
Confidence 889999999999999999765 2 110 11 112689888888877753
No 151
>KOG3192|consensus
Probab=68.38 E-value=5.8 Score=28.97 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=36.4
Q ss_pred CchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHh
Q psy3969 13 GVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55 (86)
Q Consensus 13 gn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~ 55 (86)
++..+|..-.||+=||+.+|++-.+=+++ .||+..-+|.+.
T Consensus 64 AY~TLk~pL~RA~Yilkl~g~e~~sne~s--tDpe~Lmevle~ 104 (168)
T KOG3192|consen 64 AYDTLKDPLARARYLLKLKGQEQTSNELS--TDPEFLMEVLEY 104 (168)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCchhhhc--cCHHHHHHHHHH
Confidence 45678999999999999999999999999 799999888764
No 152
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=67.89 E-value=22 Score=22.94 Aligned_cols=35 Identities=3% Similarity=-0.144 Sum_probs=23.9
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHh
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKEN 47 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~ 47 (86)
..||+.-|+. |+.+...|+. .++.|-.||++ .+++
T Consensus 27 V~f~a~~c~~------C~~~~p~l~~la~~~~~i~f~~Vd~~--~~~~ 66 (113)
T cd02989 27 CHFYHPEFFR------CKIMDKHLEILAKKHLETKFIKVNAE--KAPF 66 (113)
T ss_pred EEEECCCCcc------HHHHHHHHHHHHHHcCCCEEEEEEcc--cCHH
Confidence 3567777777 6666655543 46899999998 5554
No 153
>PRK09267 flavodoxin FldA; Validated
Probab=67.88 E-value=12 Score=25.54 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=14.1
Q ss_pred CCCcEEEEEcccCchh
Q psy3969 1 MKKPYKISNTVRGVKG 16 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~ 16 (86)
|.|+-|+|+|.+||++
T Consensus 1 mmki~IiY~S~tGnT~ 16 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE 16 (169)
T ss_pred CCeEEEEEECCCChHH
Confidence 7799999999999954
No 154
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=67.85 E-value=6.8 Score=26.86 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=20.2
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.+.|||.|.|||.+ ++.+..+.....|+|.
T Consensus 2 ~~~I~Y~S~TGNt~---------~f~~kl~~~~~~i~i~ 31 (134)
T PRK03600 2 MMLVYFSSKTGNTH---------RFVQKLGLPATRIPIN 31 (134)
T ss_pred cEEEEEECCChhHH---------HHHHHhCCcceEEecC
Confidence 46799999999943 3444445445667775
No 155
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=67.82 E-value=17 Score=31.55 Aligned_cols=54 Identities=24% Similarity=0.182 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHhCCCceEEEEcc--CCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDIT--EPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~--~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
+-..|.+|...|+.+||..+.||+. .|-|.+...+..++++ .-|.++|.++||+
T Consensus 578 mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~~--------------~vVTvEE~~~GG~ 633 (701)
T PLN02225 578 MVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHK--------------FLITVEEGCVGGF 633 (701)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhcC--------------eEEEEcCCCCCch
Confidence 4567889999999999999999993 2344444444444433 3577777777876
No 156
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=67.78 E-value=9.1 Score=25.20 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=32.2
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITE 42 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~ 42 (86)
|+.+++.|...+.....=-+.+...|++.|++++.+|+.+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 5667778877666666777888889999999999999983
No 157
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=67.62 E-value=10 Score=25.15 Aligned_cols=32 Identities=6% Similarity=-0.030 Sum_probs=20.5
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceE
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYT 36 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~ 36 (86)
|+.|.|.|.+||.+ +=..++...|...|++.+
T Consensus 2 ~i~IiY~S~tGnTe--~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 2 RILLAYLSLSGNTE--EVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred eEEEEEECCCChHH--HHHHHHHHHHhhCCeeEE
Confidence 56677788999943 334444455667777654
No 158
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=66.56 E-value=7.2 Score=27.73 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=19.1
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
..+||||.||| ..++.+..+++ .+.|.
T Consensus 3 ~~v~f~S~SgN---------t~RFv~kL~~~--~~~I~ 29 (141)
T COG1780 3 LLVYFSSLSGN---------THRFVEKLGLP--AVRIP 29 (141)
T ss_pred eEEEEEecCcc---------HHHHHHHhCCC--ceecc
Confidence 57999999999 45677776644 44443
No 159
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=65.67 E-value=21 Score=27.28 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
|++..+++.-.||....++...++...|++.|.+..+.-.+ ..-++.+..++.+
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~--~~g~a~~~a~~a~ 55 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTE--EAGDAIEIAREAA 55 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEee--cCccHHHHHHHHH
Confidence 78899999999999999999999999999999999998887 3346677666655
No 160
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=65.54 E-value=18 Score=23.13 Aligned_cols=35 Identities=6% Similarity=0.144 Sum_probs=25.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.|+|.|.+||.+ +=..++..-|...|++.+.++++
T Consensus 2 ~Iiy~S~tGnT~--~~A~~i~~~~~~~g~~v~~~~~~ 36 (140)
T TIGR01753 2 LIVYASMTGNTE--EMANIIAEGLKEAGAEVDLLEVA 36 (140)
T ss_pred EEEEECCCcHHH--HHHHHHHHHHHhcCCeEEEEEcc
Confidence 466777899943 44455666777889888888886
No 161
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=63.97 E-value=10 Score=23.36 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=38.8
Q ss_pred hhchHHHHHHHHHHHhCCCc---eEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe-CCeeeeccC
Q psy3969 15 KGVKKRQQRVLMILDSKNID---YTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN-EEDYCGVFR 85 (86)
Q Consensus 15 ~~vK~~q~~a~~lL~~k~I~---f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi-gd~yiGgyd 85 (86)
..|--+|-++.-+|+-.+.+ |+.+-.. |+. +.-+| ..|-+.. +++.+.||.
T Consensus 11 psid~ecLa~~~yl~~~~~~~~~~~vv~s~---n~~-----~Sptg------------~LP~L~~~~~~~vsg~~ 65 (72)
T PF10568_consen 11 PSIDPECLAVIAYLKFAGAPEQQFKVVPSN---NPW-----LSPTG------------ELPALIDSGGTWVSGFR 65 (72)
T ss_pred CccCHHHHHHHHHHHhCCCCCceEEEEEcC---CCC-----cCCCC------------CCCEEEECCCcEEECHH
Confidence 44556799999999999999 7777665 443 12223 7899999 999999985
No 162
>PRK00170 azoreductase; Reviewed
Probab=63.89 E-value=17 Score=25.06 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCCcEEEEEcccCc-hhchHHHHHHHHHHHhC--CCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGV-KGVKKRQQRVLMILDSK--NIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn-~~vK~~q~~a~~lL~~k--~I~f~eiDI~ 41 (86)
|.|+-++.+|...+ .--.+=...+..-|+++ +.+.+.+|+.
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~ 44 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLA 44 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 78888888888655 33333445566677777 8999999996
No 163
>PRK10670 hypothetical protein; Provisional
Probab=63.80 E-value=10 Score=26.40 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCceEEEEcc
Q psy3969 23 RVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 23 ~a~~lL~~k~I~f~eiDI~ 41 (86)
.|.++|++.+|+|+.+.++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~ 21 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYE 21 (159)
T ss_pred HHHHHHHHCCCCeEEEeec
Confidence 5899999999999996654
No 164
>PTZ00051 thioredoxin; Provisional
Probab=62.44 E-value=22 Score=21.32 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=20.5
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~ 41 (86)
..||++-|+- |+.....|.. .++.|-.+|++
T Consensus 23 i~f~~~~C~~------C~~~~~~l~~l~~~~~~~~~~~vd~~ 58 (98)
T PTZ00051 23 VDFYAEWCGP------CKRIAPFYEECSKEYTKMVFVKVDVD 58 (98)
T ss_pred EEEECCCCHH------HHHHhHHHHHHHHHcCCcEEEEEECc
Confidence 3566777766 6655555544 46888888887
No 165
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=62.34 E-value=7.7 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.5
Q ss_pred chhchHHHHHHHHHHHhCCCce
Q psy3969 14 VKGVKKRQQRVLMILDSKNIDY 35 (86)
Q Consensus 14 n~~vK~~q~~a~~lL~~k~I~f 35 (86)
..++.++.+.||.-|++||+++
T Consensus 70 ~~eL~~eI~eAK~dLr~kGv~~ 91 (91)
T PF08285_consen 70 AKELQKEIKEAKADLRKKGVDV 91 (91)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 4678999999999999999874
No 166
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=62.13 E-value=30 Score=20.32 Aligned_cols=15 Identities=0% Similarity=0.333 Sum_probs=11.0
Q ss_pred CCceEEEEccCCCCHhH
Q psy3969 32 NIDYTVIDITEPGKENE 48 (86)
Q Consensus 32 ~I~f~eiDI~~~~d~~~ 48 (86)
++.|-.+|++ .+++.
T Consensus 46 ~~~~~~vd~~--~~~~~ 60 (101)
T TIGR01068 46 KVKFVKLNVD--ENPDI 60 (101)
T ss_pred CeEEEEEECC--CCHHH
Confidence 4888999987 55543
No 167
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=61.22 E-value=8.4 Score=26.32 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=16.6
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCC--ceEEEEcc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNI--DYTVIDIT 41 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I--~f~eiDI~ 41 (86)
|||+|.||| .+++.+..+. +...|.+.
T Consensus 1 I~Y~S~tGN---------t~rFv~kL~~~~~~~~i~~~ 29 (122)
T PF07972_consen 1 IYYSSLTGN---------TRRFVEKLGLYAPAIRIPIR 29 (122)
T ss_dssp EEE--SSSH---------HHHHHHHH-S--SEEEE-SS
T ss_pred CEEECCCcC---------HHHHHHHHcccchhcccccc
Confidence 799999999 5677777777 55555543
No 168
>KOG4420|consensus
Probab=60.71 E-value=2.3 Score=33.62 Aligned_cols=53 Identities=23% Similarity=0.424 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCceEEEEccCCCCHhHHH-HHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 21 QQRVLMILDSKNIDYTVIDITEPGKENEKE-FMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~-~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
-|+++..+..|||+|++.||+-+..+-.-. +|+-+.+ .-||-+-.|+.-|-++
T Consensus 38 sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-----------gevPVl~~g~~II~d~ 91 (325)
T KOG4420|consen 38 SQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-----------GEVPVLIHGDNIISDY 91 (325)
T ss_pred cceeeeehhhcccccceeeccCccccccCchheecCCC-----------CCCceEecCCeecccH
Confidence 578899999999999999998443332222 4555443 3688777776666554
No 169
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=60.00 E-value=11 Score=22.82 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=22.4
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDI 40 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI 40 (86)
|.+..|-+.|.+. -.+|..+|+++||+++.+.+
T Consensus 1 m~~~~i~F~st~~-------a~~~ek~lk~~gi~~~liP~ 33 (73)
T PF11823_consen 1 MKYYLITFPSTHD-------AMKAEKLLKKNGIPVRLIPT 33 (73)
T ss_pred CceEEEEECCHHH-------HHHHHHHHHHCCCcEEEeCC
Confidence 4444455555443 36788899999998888765
No 170
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=59.60 E-value=22 Score=25.43 Aligned_cols=39 Identities=5% Similarity=-0.007 Sum_probs=32.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+.++..|.+.+..-.+=.+.+...|..+|++.+.+|+.
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 567777888777667777788888999999999999996
No 171
>PRK13059 putative lipid kinase; Reviewed
Probab=59.09 E-value=38 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=35.6
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|++..+++.-.||+-...+.-.+++..|...|+++..+..+
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~ 41 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEKGYLVVPYRIS 41 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHCCcEEEEEEcc
Confidence 78889999999999877777788999999999998887776
No 172
>KOG0868|consensus
Probab=58.53 E-value=19 Score=27.10 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=36.8
Q ss_pred CCcEE--EEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHH--HHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 2 KKPYK--ISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKE--FMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 2 ~~~~~--y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~--~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
.||.+ ||.|.|+- |++--|.-|||+|+.+-|+- -..+... +.++.. +-.+||-+-+|
T Consensus 4 ~KpiLYSYWrSSCsw--------RVRiALaLK~iDYey~PvnL-lk~~~q~~~ef~~iN----------Pm~kVP~L~i~ 64 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSW--------RVRIALALKGIDYEYKPVNL-LKEEDQSDSEFKEIN----------PMEKVPTLVID 64 (217)
T ss_pred ccchhhhhhcccchH--------HHHHHHHHcCCCcceeehhh-hcchhhhhhHHhhcC----------chhhCCeEEEC
Confidence 35555 46666655 56666777888887776641 1222221 344433 44589999999
Q ss_pred Ceee
Q psy3969 78 EDYC 81 (86)
Q Consensus 78 d~yi 81 (86)
|.-+
T Consensus 65 g~tl 68 (217)
T KOG0868|consen 65 GLTL 68 (217)
T ss_pred CEEe
Confidence 8754
No 173
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=58.40 E-value=35 Score=24.23 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=26.5
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhC-CCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSK-NIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k-~I~f~eiDI~ 41 (86)
|+.|.|.|.+||.+ +=.+.+..-|++. |++.+.+++.
T Consensus 2 kilIiY~S~~G~T~--~lA~~ia~g~~~~~g~ev~~~~v~ 39 (197)
T TIGR01755 2 KVLVLYYSMYGHIE--TMARAVAEGAREVDGAEVVVKRVP 39 (197)
T ss_pred eEEEEEeCCCCHHH--HHHHHHHHHHHhcCCCEEEEEecc
Confidence 56777777788843 3345555566665 9999999996
No 174
>PRK09381 trxA thioredoxin; Provisional
Probab=56.83 E-value=44 Score=20.57 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=34.1
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh------CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeE--Ee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS------KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQI--FN 76 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~------k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQI--Fi 76 (86)
..||++-|+. |..+...|+. .++.+-.+|++ .++... ++.+ - ..+|.+ |.
T Consensus 26 v~f~~~~C~~------C~~~~p~~~~l~~~~~~~~~~~~vd~~--~~~~~~----~~~~--v--------~~~Pt~~~~~ 83 (109)
T PRK09381 26 VDFWAEWCGP------CKMIAPILDEIADEYQGKLTVAKLNID--QNPGTA----PKYG--I--------RGIPTLLLFK 83 (109)
T ss_pred EEEECCCCHH------HHHHhHHHHHHHHHhCCCcEEEEEECC--CChhHH----HhCC--C--------CcCCEEEEEe
Confidence 3577787887 6666555532 34778888887 555432 2333 2 267866 55
Q ss_pred CCeeee
Q psy3969 77 EEDYCG 82 (86)
Q Consensus 77 gd~yiG 82 (86)
+|+.++
T Consensus 84 ~G~~~~ 89 (109)
T PRK09381 84 NGEVAA 89 (109)
T ss_pred CCeEEE
Confidence 777654
No 175
>KOG0867|consensus
Probab=56.60 E-value=52 Score=23.83 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=39.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
+..+|..-.+.. |.++...|+.+|++|+.+.|+....+-.-.+..... +..+||-+==|
T Consensus 2 ~~~ly~~~~s~~------~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~n----------P~~kVP~l~d~ 60 (226)
T KOG0867|consen 2 KLKLYGHLGSPP------ARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLN----------PLGKVPALEDG 60 (226)
T ss_pred CceEeecCCCcc------hHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcC----------cCCCCCeEecC
Confidence 456788888887 999999999999999999664212223333344322 44588865444
No 176
>KOG1422|consensus
Probab=55.66 E-value=27 Score=26.51 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=41.1
Q ss_pred cEEEEEcccCchhchHH---HHHHHHHHHhCCCceE--EEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 4 PYKISNTVRGVKGVKKR---QQRVLMILDSKNIDYT--VIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~---q~~a~~lL~~k~I~f~--eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
+++++--.|++...... |||..+.|..|++.|+ .||++ ..|+ +.+..++ .+ -||-|=.|+
T Consensus 4 iel~vkA~s~~~~~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~---~f~~~sp--~~--------~~P~l~~d~ 68 (221)
T KOG1422|consen 4 IELCVKAGSDGPDSLGDCPFCQRLFMTLELKGVPFKVTTVDLS--RKPE---WFLDISP--GG--------KPPVLKFDE 68 (221)
T ss_pred eEEEEEeccCCcccCCCChhHHHHHHHHHHcCCCceEEEeecC--CCcH---HHHhhCC--CC--------CCCeEEeCC
Confidence 44555444444444433 7999999999999985 46665 4454 4566775 22 588887777
Q ss_pred eeee
Q psy3969 79 DYCG 82 (86)
Q Consensus 79 ~yiG 82 (86)
+.+=
T Consensus 69 ~~~t 72 (221)
T KOG1422|consen 69 KWVT 72 (221)
T ss_pred ceec
Confidence 6543
No 177
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=55.46 E-value=38 Score=21.53 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=19.0
Q ss_pred EEEEEcccCchhchHHHH----HHHHHHHhCCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQ----RVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~----~a~~lL~~k~I~f~eiDI~ 41 (86)
..|+++-|+.++.-...- .....++ .++.+-.||++
T Consensus 19 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d 58 (125)
T cd02951 19 LLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINID 58 (125)
T ss_pred EEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEcc
Confidence 457788888833222111 1222333 46677778876
No 178
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=55.29 E-value=14 Score=24.73 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCceEEEEcc
Q psy3969 22 QRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~ 41 (86)
+++.++|++.||+|+.++..
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~ 21 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHP 21 (153)
T ss_pred HHHHHHHHHCCCCEEEEecC
Confidence 47889999999999999875
No 179
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=55.11 E-value=41 Score=26.28 Aligned_cols=40 Identities=5% Similarity=0.044 Sum_probs=28.6
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHH--hCCCceEEEEccC
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILD--SKNIDYTVIDITE 42 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~--~k~I~f~eiDI~~ 42 (86)
++|+.|.|.|.+||++.--+ .+..-|. +.|++.+.+|+.+
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~--~ia~g~~~~~~g~~v~~~~~~~ 288 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAE--AIAEGIKKANKDVTVKLYNSAK 288 (394)
T ss_pred cCcEEEEEECCchHHHHHHH--HHHHHHhhcCCCCeEEEEECCC
Confidence 46899999999999654432 2223355 6788999999973
No 180
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=54.66 E-value=40 Score=20.38 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=24.8
Q ss_pred EEEEcccC-chhchHHHHHHHHHHHhCCCceEEEE
Q psy3969 6 KISNTVRG-VKGVKKRQQRVLMILDSKNIDYTVID 39 (86)
Q Consensus 6 ~y~ss~sg-n~~vK~~q~~a~~lL~~k~I~f~eiD 39 (86)
+++-.+.. +.+....+..+.+.|...||....-+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~ 36 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD 36 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 44445554 55678889999999999997766544
No 181
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=54.23 E-value=13 Score=25.04 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCceEEEEcc
Q psy3969 23 RVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 23 ~a~~lL~~k~I~f~eiDI~ 41 (86)
.|.++|++.||+|+.++-.
T Consensus 2 ~~~~~L~~~~i~~~~~~~~ 20 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYE 20 (152)
T ss_pred HHHHHHHHcCCCcEEEEec
Confidence 5889999999999999886
No 182
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=52.91 E-value=24 Score=26.15 Aligned_cols=41 Identities=7% Similarity=0.101 Sum_probs=35.6
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.|+.+++.|.+.+.--++=.+.|...|...|++++.+|+.
T Consensus 26 ~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 26 IPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcc
Confidence 45778888899888888888999999999889999999984
No 183
>PRK09739 hypothetical protein; Provisional
Probab=52.49 E-value=35 Score=23.92 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=29.0
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.|+-+..+|...+.--..=...+..-|++.|.+.+.+|+.
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 66788888887654333344455566677889999999997
No 184
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=52.15 E-value=49 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHhCCCceEEEEcc--CCCCHhH
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDIT--EPGKENE 48 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~--~~~d~~~ 48 (86)
+-.+|.+|-..|+++||..+.||+. .|-|.+.
T Consensus 555 ~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~ 588 (641)
T PLN02234 555 AVQRCLEAASMLSERGLKITVADARFCKPLDVAL 588 (641)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHH
Confidence 4456888888999999999999994 2344443
No 185
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.32 E-value=43 Score=20.57 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHH
Q psy3969 18 KKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQ 53 (86)
Q Consensus 18 K~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~ 53 (86)
..+.+.+...|+++|+.|. +++ .++..+..++
T Consensus 52 ~~~~~~i~~~L~~~G~~~~--~~~--~~~~~~~~l~ 83 (85)
T cd04906 52 AEELAELLEDLKSAGYEVV--DLS--DDELAKTHLR 83 (85)
T ss_pred HHHHHHHHHHHHHCCCCeE--ECC--CCHHHHHHhh
Confidence 5678899999999997664 677 6777665543
No 186
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=50.25 E-value=15 Score=21.39 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCCceEEEEcc
Q psy3969 20 RQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+.+.++.+|++.||++...|-.
T Consensus 11 ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 11 EAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp HHHHHHHHHHHTT--EE--S--
T ss_pred HHHHHHHHHHhCCCcEEEECCc
Confidence 4788999999999999887765
No 187
>PRK00861 putative lipid kinase; Reviewed
Probab=50.22 E-value=50 Score=24.57 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=37.4
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
|++..+++.-.||+..-.+.-.+++.+|+. +++|+.+... ....+.+..++..
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~--~~~~a~~~a~~~~ 54 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLTT--PEIGADQLAQEAI 54 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEcc--CCCCHHHHHHHHH
Confidence 678889999999987766666788888886 4788777665 3344445444443
No 188
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=48.30 E-value=40 Score=21.95 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=18.7
Q ss_pred EEEEcccCchhch-HHHHHHHHHHHhCCCceEEEEcc
Q psy3969 6 KISNTVRGVKGVK-KRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 6 ~y~ss~sgn~~vK-~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.|+++=|+.++.- +.-.....+ ......|..+|++
T Consensus 25 ~F~a~WC~~C~~~~~~~~~~~~~-~~~~~~fv~v~vd 60 (117)
T cd02959 25 LIHKTWCGACKALKPKFAESKEI-SELSHNFVMVNLE 60 (117)
T ss_pred EEeCCcCHHHHHHHHHHhhhHHH-HhhcCcEEEEEec
Confidence 3667777773322 222222222 1245689999998
No 189
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=48.06 E-value=23 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=26.1
Q ss_pred ccCchhchHHHHHHHHHHHhCCCceEEEEc
Q psy3969 11 VRGVKGVKKRQQRVLMILDSKNIDYTVIDI 40 (86)
Q Consensus 11 ~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI 40 (86)
.+||-.-|.+-.-++.+|+..||+-+-++.
T Consensus 70 ~~GN~ka~rR~~~lke~l~elgie~eRv~~ 99 (132)
T COG1908 70 ISGNYKAKRRMELLKELLKELGIEPERVRV 99 (132)
T ss_pred eccchHHHHHHHHHHHHHHHhCCCcceEEE
Confidence 479999999999999999999998665554
No 190
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=47.84 E-value=54 Score=26.74 Aligned_cols=40 Identities=3% Similarity=0.063 Sum_probs=27.9
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhC--CCceEEEEccC
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSK--NIDYTVIDITE 42 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k--~I~f~eiDI~~ 42 (86)
+.|+.|.|.|.+||++.. -+.+..=|++. |++.+..++++
T Consensus 251 ~~kv~IvY~S~~GnTe~m--A~~ia~gl~~~g~gv~v~~~~v~~ 292 (479)
T PRK05452 251 EDRITIFYDTMSNNTRMM--ADAIAQGIAEVDPRVAVKIFNVAR 292 (479)
T ss_pred cCcEEEEEECCccHHHHH--HHHHHHHHHhhCCCceEEEEECCC
Confidence 468899999999997633 23333445544 68888889873
No 191
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=47.81 E-value=19 Score=24.31 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCceEEEEcc
Q psy3969 22 QRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~ 41 (86)
..+..+|++.||+|+.++-.
T Consensus 2 ~~~~~~L~~~~i~~~~~~h~ 21 (152)
T cd00002 2 TPAIRLLDKAKIPYELHEYE 21 (152)
T ss_pred CHHHHHHHHcCCCeEEEeec
Confidence 45789999999999999986
No 192
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=47.71 E-value=57 Score=19.19 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=21.0
Q ss_pred EEEEcccCc-hhchHHHHHHHHHHHhCCCceEEEEccCCCCHh
Q psy3969 6 KISNTVRGV-KGVKKRQQRVLMILDSKNIDYTVIDITEPGKEN 47 (86)
Q Consensus 6 ~y~ss~sgn-~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~ 47 (86)
.|++.-|+. ..++..-.++...+.. +|.|-.||++ .+++
T Consensus 23 ~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~--~~~~ 62 (103)
T PF00085_consen 23 YFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD--ENKE 62 (103)
T ss_dssp EEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT--TSHH
T ss_pred EEeCCCCCccccccceeccccccccc-ccccchhhhh--ccch
Confidence 455555555 2233333333333333 7889999997 4543
No 193
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=47.60 E-value=70 Score=20.17 Aligned_cols=54 Identities=7% Similarity=0.099 Sum_probs=32.1
Q ss_pred EEEEcccCchhchHHHHHHHHHHHh-----CCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCC--eEEeCC
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDS-----KNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPP--QIFNEE 78 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~-----k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvP--QIFigd 78 (86)
.||++-|+- |+.....|+. .++.|-.||++ .+ .+.++.+ -+ .+| .+|.+|
T Consensus 30 ~F~a~~c~~------C~~l~~~l~~la~~~~~v~f~~vd~~--~~-----~l~~~~~--i~--------~~Pt~~~f~~G 86 (113)
T cd02957 30 HFYEPGFPR------CKILDSHLEELAAKYPETKFVKINAE--KA-----FLVNYLD--IK--------VLPTLLVYKNG 86 (113)
T ss_pred EEeCCCCCc------HHHHHHHHHHHHHHCCCcEEEEEEch--hh-----HHHHhcC--CC--------cCCEEEEEECC
Confidence 477788887 5555544432 46888888887 33 3444444 11 345 557777
Q ss_pred eeee
Q psy3969 79 DYCG 82 (86)
Q Consensus 79 ~yiG 82 (86)
+-++
T Consensus 87 ~~v~ 90 (113)
T cd02957 87 ELID 90 (113)
T ss_pred EEEE
Confidence 7654
No 194
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=47.58 E-value=23 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.9
Q ss_pred ccCchhchHHHHHHHHHHHhCCCceEEEEc
Q psy3969 11 VRGVKGVKKRQQRVLMILDSKNIDYTVIDI 40 (86)
Q Consensus 11 ~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI 40 (86)
..||...+++...++.+|+..||+-+-+.+
T Consensus 69 ~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~ 98 (124)
T PF02662_consen 69 REGNYRAEKRVERLKKLLEELGIEPERVRL 98 (124)
T ss_pred chhhHHHHHHHHHHHHHHHHcCCChhHeEE
Confidence 468899999999999999999999444443
No 195
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=47.57 E-value=13 Score=24.27 Aligned_cols=17 Identities=6% Similarity=0.276 Sum_probs=13.5
Q ss_pred CCCCeEEeCCeeeeccC
Q psy3969 69 PLPPQIFNEEDYCGVFR 85 (86)
Q Consensus 69 ~tvPQIFigd~yiGgyd 85 (86)
+-.=|+|+||.++|-|.
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 34559999999999763
No 196
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=45.73 E-value=61 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.0
Q ss_pred EEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 37 VIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 37 eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
-+=.| .|.+.|..+++..| +|-||+..
T Consensus 67 ~~VaT--~D~~Lr~~lr~~~G-------------vPvi~l~~ 93 (101)
T PF04900_consen 67 YIVAT--QDKELRRRLRKIPG-------------VPVIYLRR 93 (101)
T ss_pred EEEEe--cCHHHHHHHhcCCC-------------CCEEEEEC
Confidence 44457 89999999986666 89999874
No 197
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=45.49 E-value=79 Score=21.19 Aligned_cols=31 Identities=6% Similarity=0.155 Sum_probs=19.3
Q ss_pred EEEEEcccCchhchHHHHHHHHHHH----h--CCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILD----S--KNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~----~--k~I~f~eiDI~ 41 (86)
..||++-|+. |.+....|. . ..+.|-.||++
T Consensus 25 V~F~A~WC~~------C~~~~p~l~~l~~~~~~~~~~v~v~vd 61 (142)
T cd02950 25 VEFYADWCTV------CQEMAPDVAKLKQKYGDQVNFVMLNVD 61 (142)
T ss_pred EEEECCcCHH------HHHhHHHHHHHHHHhccCeeEEEEEcC
Confidence 4577777887 554444433 2 24678888886
No 198
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=45.43 E-value=27 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=18.7
Q ss_pred hchHHHHHHHHHHHhCCCceEEE
Q psy3969 16 GVKKRQQRVLMILDSKNIDYTVI 38 (86)
Q Consensus 16 ~vK~~q~~a~~lL~~k~I~f~ei 38 (86)
+--+|+..++.+|++-|++++++
T Consensus 27 e~p~R~~av~~~les~G~k~~~~ 49 (104)
T COG4274 27 ETPKRAAAVRALLESMGGKVKEQ 49 (104)
T ss_pred hCHHHHHHHHHHHHHcCcEEEEE
Confidence 34478889999999999988754
No 199
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=45.27 E-value=87 Score=20.57 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=23.6
Q ss_pred cEEEEEcccCchhchHHHHHH----HHHHHhCCCceEEEEcc
Q psy3969 4 PYKISNTVRGVKGVKKRQQRV----LMILDSKNIDYTVIDIT 41 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a----~~lL~~k~I~f~eiDI~ 41 (86)
+..|+++-|+. |+++ ..+.+..++++-.+|++
T Consensus 27 iv~f~~~~Cp~------C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPY------CRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChh------HHHHhHHHHHHHHhcCCcEEEEECC
Confidence 34567788888 8875 44555567889999997
No 200
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=45.16 E-value=72 Score=26.11 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=39.1
Q ss_pred CCCcEEEEEcccCchhchHHH-HHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHh
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQ-QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q-~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~ 55 (86)
|++..+++.-.||+..-++.- ..++.+|+..+++|+.+--. ....+++.+.+.
T Consensus 111 ~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~--~~ghA~~la~~~ 164 (481)
T PLN02958 111 PKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK--YQLHAKEVVRTM 164 (481)
T ss_pred CcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc--CccHHHHHHHHh
Confidence 467789999999998776664 46888999999999877444 345556655554
No 201
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=44.75 E-value=91 Score=24.15 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHhCCCceEEEEcc--CCCCHhHHHHHHHhc
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDIT--EPGKENEKEFMQQNS 56 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~--~~~d~~~r~~M~~~~ 56 (86)
+-.++.+|-..|+++||+.+.||+. .|-|.+......+++
T Consensus 212 ~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t 253 (327)
T CHL00144 212 MRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKT 253 (327)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhh
Confidence 4566889999999999999999994 233444444444444
No 202
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=44.56 E-value=85 Score=20.28 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=31.6
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|..++++..||...-+ -.++..+|...+.+++.+...
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~~~~~~~~t~ 37 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAGIDYEVIETE 37 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcCCceEEEEEe
Confidence 4678999999997766 478899999999999998887
No 203
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=44.45 E-value=13 Score=23.74 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=28.9
Q ss_pred HHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeeccC
Q psy3969 24 VLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85 (86)
Q Consensus 24 a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgyd 85 (86)
...++...|++..+++-.. .+++.++.+.+....-.. .+-..+|-+|++|+++-|++
T Consensus 88 l~~~a~~~gl~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~gi~gtPt~~v~g~~~~G~~ 144 (154)
T cd03023 88 LLRIAKKAGLDEAKLKKDM-DDPEIEATIDKNRQLARA----LGITGTPAFIIGDTVIPGAV 144 (154)
T ss_pred HHHHHHHcCCCHHHHHHHh-hChHHHHHHHHHHHHHHH----cCCCcCCeEEECCEEecCCC
Confidence 4455666777665443221 233333433332200000 12235789999999988775
No 204
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=43.47 E-value=38 Score=25.55 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=29.0
Q ss_pred EEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 8 SNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 8 ~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+|=-.|-+. +++-+.|+.|.+..||++..||++
T Consensus 32 lsfdYGQrh-~~Ele~A~~iak~lgv~~~iid~~ 64 (222)
T COG0603 32 LTFDYGQRH-RKELEAAKELAKKLGVPHHIIDVD 64 (222)
T ss_pred EEeeCCCCc-HHHHHHHHHHHHHcCCCeEEechh
Confidence 444567788 999999999999999999999997
No 205
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=43.29 E-value=26 Score=23.65 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCceEEEEcc
Q psy3969 22 QRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~ 41 (86)
+++.++|++.||+|+.++..
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~ 21 (156)
T cd04335 2 DELLALLDELGIAYETVEHP 21 (156)
T ss_pred hHHHHHHHHCCCceEEEecC
Confidence 57889999999999999975
No 206
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=42.42 E-value=63 Score=22.15 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=28.2
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+.++..|...+.--.+=.+.+...|...|.+++.+|+.
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~ 39 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVR 39 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 345566666555555556667778888899999999986
No 207
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=42.05 E-value=93 Score=22.08 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=19.5
Q ss_pred EEEEE---cccCchhchHHHHHHHHHHHhC-----CCceEEEEcc
Q psy3969 5 YKISN---TVRGVKGVKKRQQRVLMILDSK-----NIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~s---s~sgn~~vK~~q~~a~~lL~~k-----~I~f~eiDI~ 41 (86)
.+|++ +-|+. |+.+..+|+.. ++++..++++
T Consensus 24 ~~f~~~~a~wC~~------C~~~~p~l~~la~~~~~~~i~~v~vd 62 (215)
T TIGR02187 24 VVFTDNDKEGCQY------CKETEQLLEELSEVSPKLKLEIYDFD 62 (215)
T ss_pred EEEcCCCCCCCCc------hHHHHHHHHHHHhhCCCceEEEEecC
Confidence 45666 55677 66666655432 4667788886
No 208
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=41.94 E-value=11 Score=27.61 Aligned_cols=52 Identities=8% Similarity=-0.050 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
-.|+.||...||+.-.--+. .+++.-....+..|. . ....=|||..|++-.|
T Consensus 5 yqaK~ll~~~gi~vp~g~~a--~s~eea~~~~~~l~~--~-----~~VvKaQvl~GgRGK~ 56 (202)
T PF08442_consen 5 YQAKELLRKYGIPVPRGVVA--TSPEEAREAAKELGG--K-----PLVVKAQVLAGGRGKA 56 (202)
T ss_dssp HHHHHHHHCTT----SEEEE--SSHHHHHHHHHHHTT--S-----SEEEEE-SSSSTTTTT
T ss_pred HHHHHHHHHcCCCCCCeeec--CCHHHHHHHHHHhCC--C-----cEEEEEeEeecCcccC
Confidence 36899999999998877777 567776666666651 1 1245578888776443
No 209
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=40.94 E-value=64 Score=21.53 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
+++.++|++++|+|+.+... .....-++..+..|
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~--~~~~t~~e~a~~~~ 35 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELP--ESTRTAALAAEALG 35 (148)
T ss_pred HHHHHHHHHCCCCCeEEECC--CCcchHHHHHHHcC
Confidence 57889999999999998886 22222344555554
No 210
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=40.91 E-value=93 Score=19.64 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=24.3
Q ss_pred EEEEEcccCch-hchHHHHHHHHHHHhCCCceEEEEccCCCCHh
Q psy3969 5 YKISNTVRGVK-GVKKRQQRVLMILDSKNIDYTVIDITEPGKEN 47 (86)
Q Consensus 5 ~~y~ss~sgn~-~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~ 47 (86)
..||++-|+.. .+...-.++..-|...++.+-.||++ .+++
T Consensus 29 V~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~ 70 (111)
T cd02963 29 IKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERR 70 (111)
T ss_pred EEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHH
Confidence 34677767763 23333344444555557888899987 4544
No 211
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=40.68 E-value=82 Score=18.97 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=22.2
Q ss_pred EEEEEcccCch-hchHHHHHHHHHHHhCCCceEEEEccCCCCHh
Q psy3969 5 YKISNTVRGVK-GVKKRQQRVLMILDSKNIDYTVIDITEPGKEN 47 (86)
Q Consensus 5 ~~y~ss~sgn~-~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~ 47 (86)
..||++-|+.. ++...-.++..-++..+|.+-.+|++ .+++
T Consensus 21 v~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~ 62 (101)
T cd02994 21 IEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QEPG 62 (101)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CCHh
Confidence 45667767762 22222222222233446888889987 5555
No 212
>PRK12359 flavodoxin FldB; Provisional
Probab=40.54 E-value=54 Score=23.26 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=20.5
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCc-eEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNID-YTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~-f~eiDI~ 41 (86)
|+-|+|.|.+||++- -|+.|-+..|.+ .+.+|+.
T Consensus 2 ki~I~Y~S~TGNTe~-----vAe~I~~~lg~~~v~v~~i~ 36 (172)
T PRK12359 2 KIGLFYGSSTCYTEM-----AAEKIRDIIGEELVDLHNLK 36 (172)
T ss_pred eEEEEEECCCCHHHH-----HHHHHHHHhCCCeEEEEEcc
Confidence 678999999999653 333333334443 4555554
No 213
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=40.39 E-value=13 Score=24.72 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.....++.+.|++.+.+.-.. .+.+.++.+.+....-.+ .+-...|-+||||+++
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~-~s~~~~~~i~~~~~~~~~----~gi~gTPt~iInG~~~ 154 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAY-NSFSVKALVAKAEKLAKK----YKITGVPAFVVNGKYV 154 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHH-hCHHHHHHHHHHHHHHHH----cCCCCCCeEEECCEEE
Confidence 346677788888766544321 344443333332210000 1234679999999875
No 214
>PF06215 ISAV_HA: Infectious salmon anaemia virus haemagglutinin; InterPro: IPR010408 This entry represents the haemagglutinin-esterase fusion glycoprotein (HEF) found specifically in infectious anaemia virus (ISAV), an orthomyxovirus-type virus that is an important fish pathogen in marine aquaculture [, ]. Other viruses, such as influenza C virus, coronaviruses and toroviruses, also contain surface HEF proteins, but whereas they usually bind 9-O-acetylsialic acid receptors, ISAV HEF appears to bind 4-O- acetylsialic acid receptors []. Haemagglutinin-esterase fusion glycoprotein is a multi-functional protein embedded in the viral envelope of ISAV. HEF is required for infectivity, and functions to recognise the host cell surface receptor, to fuse the viral and host cell membranes, and to destroy the receptor upon host cell infection. The haemagglutinin region of HEF is responsible for receptor recognition and membrane fusion. The serine esterase region of HEF is responsible for the destruction of the receptor, though it appears to be distinct from the esterase domain found in influenza C virus. Haemagglutinin-esterase glycoproteins must usually be cleaved by the host's trypsin-like proteases to produce two peptides (HEF1 and HEF2) necessary for the virus to be infectious. The cleaved HEF protein can then fuse the viral envelope to the cellular membrane of the host cell, which allows the virus to infect the host cell. More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].
Probab=40.36 E-value=29 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=18.5
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCCCCCeEEeC
Q psy3969 47 NEKEFMQQNSKATPSDSTVKSNPLPPQIFNE 77 (86)
Q Consensus 47 ~~r~~M~~~~g~~~~~~~~~~~~tvPQIFig 77 (86)
++.+||+.+.+.+-.+-.+.-.+.||||||-
T Consensus 321 alhkEMiskl~rNitdV~~~v~ai~~nifIS 351 (391)
T PF06215_consen 321 ALHKEMISKLQRNITDVKIRVDAIPPNIFIS 351 (391)
T ss_pred HHHHHHHHHHhcccccccccccccccceEEE
Confidence 4567888888622222112225789999984
No 215
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=40.31 E-value=73 Score=18.95 Aligned_cols=35 Identities=6% Similarity=0.089 Sum_probs=19.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh------CCCceEEEEccCCCCHh
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS------KNIDYTVIDITEPGKEN 47 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~------k~I~f~eiDI~~~~d~~ 47 (86)
..||++-|+. |++....|.. ..+.+-.||++ .+++
T Consensus 17 v~f~a~wC~~------C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~ 57 (96)
T cd02956 17 VDFWAPRSPP------SKELLPLLERLAEEYQGQFVLAKVNCD--AQPQ 57 (96)
T ss_pred EEEECCCChH------HHHHHHHHHHHHHHhCCcEEEEEEecc--CCHH
Confidence 4566776666 5554444432 23666777877 5544
No 216
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=39.98 E-value=73 Score=26.07 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=32.7
Q ss_pred cEEEEEcccCchhchHHH-------HHHHHHHHhCCCceEEEEccCCCCHhHHHH
Q psy3969 4 PYKISNTVRGVKGVKKRQ-------QRVLMILDSKNIDYTVIDITEPGKENEKEF 51 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q-------~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~ 51 (86)
+.+|+..+.+++.-.++- +-|-++|+.+||-|=.||+. .+...++.
T Consensus 55 ~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~--Kd~klAKK 107 (383)
T PF01216_consen 55 VLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK--KDAKLAKK 107 (383)
T ss_dssp EEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT--TTHHHHHH
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH--HHHHHHHh
Confidence 457888888887766654 34567889999999999998 66665543
No 217
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=39.69 E-value=1.1e+02 Score=24.07 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHhCCCceEEEEcc--CCCCHhHHHHHHHhcC
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDIT--EPGKENEKEFMQQNSK 57 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~--~~~d~~~r~~M~~~~g 57 (86)
+-..+.+|...|+.+||+.+.||+. .|-|.+...+..++++
T Consensus 239 ~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~ 281 (356)
T PLN02683 239 MVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTN 281 (356)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcC
Confidence 3455777888889999999999994 2344444444444443
No 218
>PTZ00323 NAD+ synthase; Provisional
Probab=39.48 E-value=77 Score=24.49 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
-....++|+.+++..||++..|||+
T Consensus 90 s~~~~~~A~~la~~lGi~~~~idi~ 114 (294)
T PTZ00323 90 SAWALNRGRENIQACGATEVTVDQT 114 (294)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEECc
Confidence 3467899999999999999999998
No 219
>PRK07116 flavodoxin; Provisional
Probab=39.28 E-value=67 Score=21.77 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=12.4
Q ss_pred CCCcEEEEEcccCch
Q psy3969 1 MKKPYKISNTVRGVK 15 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~ 15 (86)
|.|+-|+|.|-+||+
T Consensus 2 m~k~lIvY~S~tGnT 16 (160)
T PRK07116 2 NNKTLVAYFSATGTT 16 (160)
T ss_pred CCcEEEEEECCCCcH
Confidence 678888888999994
No 220
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=38.41 E-value=90 Score=19.46 Aligned_cols=37 Identities=5% Similarity=0.043 Sum_probs=22.1
Q ss_pred EEEEEcccCc-hhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 5 YKISNTVRGV-KGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn-~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
..||++-|+. .++++.-..+.+.+...++.|-.||++
T Consensus 26 v~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 26 VVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 3466666665 334444444445555556778888876
No 221
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=38.06 E-value=53 Score=21.16 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhCCCceEEEEcc--CCCCHhHHHHHHHhc
Q psy3969 18 KKRQQRVLMILDSKNIDYTVIDIT--EPGKENEKEFMQQNS 56 (86)
Q Consensus 18 K~~q~~a~~lL~~k~I~f~eiDI~--~~~d~~~r~~M~~~~ 56 (86)
-..+.+|...|+++||+...||+. .|-|.+...+...++
T Consensus 21 ~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~ 61 (124)
T PF02780_consen 21 VEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKT 61 (124)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHh
Confidence 467899999999999999999983 234445444433333
No 222
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=37.93 E-value=1.3e+02 Score=20.63 Aligned_cols=48 Identities=15% Similarity=0.100 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCceEEEEcc-----C-----CCCHhHHHHHHHhcCCCCCCCCCCCCCCCC--eEEeCCe
Q psy3969 20 RQQRVLMILDSKNIDYTVIDIT-----E-----PGKENEKEFMQQNSKATPSDSTVKSNPLPP--QIFNEED 79 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~-----~-----~~d~~~r~~M~~~~g~~~~~~~~~~~~tvP--QIFigd~ 79 (86)
....+..+|+..|+.|..+=++ + ..+++....+.++.+ ..| -+|+||.
T Consensus 70 ~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~------------~~~~e~l~IGD~ 129 (161)
T TIGR01261 70 PHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNL------------IDKARSYVIGDR 129 (161)
T ss_pred HHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcC------------CCHHHeEEEeCC
Confidence 3457889999999997544321 0 124566666666665 345 7899886
No 223
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=37.87 E-value=88 Score=18.50 Aligned_cols=31 Identities=3% Similarity=0.072 Sum_probs=20.7
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHh------CCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDS------KNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~------k~I~f~eiDI~ 41 (86)
..||++-|+. |+++...|+. ..+.|-.+|++
T Consensus 19 v~f~~~~C~~------C~~~~~~l~~l~~~~~~~i~~~~vd~~ 55 (97)
T cd02984 19 LHFWAPWAEP------CKQMNQVFEELAKEAFPSVLFLSIEAE 55 (97)
T ss_pred EEEECCCCHH------HHHHhHHHHHHHHHhCCceEEEEEccc
Confidence 4577777877 7766665553 36677777776
No 224
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=37.05 E-value=1.3e+02 Score=20.40 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=30.4
Q ss_pred CcEEEEEcccCc-hhchHHHHHHHHHHHhCCC---ceEEEEccC
Q psy3969 3 KPYKISNTVRGV-KGVKKRQQRVLMILDSKNI---DYTVIDITE 42 (86)
Q Consensus 3 ~~~~y~ss~sgn-~~vK~~q~~a~~lL~~k~I---~f~eiDI~~ 42 (86)
+..+.+.|-||+ .|+-.....|+.+|+.++. .-..|=|++
T Consensus 74 ~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~ 117 (158)
T cd05015 74 TTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITD 117 (158)
T ss_pred cEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcC
Confidence 456777888885 7899999999999988764 346667774
No 225
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=36.97 E-value=73 Score=21.32 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=35.1
Q ss_pred EEEEcccCchhchHHHHHHHHHHHh-----CC-CceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCe
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDS-----KN-IDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEED 79 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~-----k~-I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~ 79 (86)
-|+++=||- |....-+|+. .+ +.|-.||++ .+++.- ++.+ -+ +-+|+ .+|-+|+
T Consensus 20 ~F~A~WCgp------Ck~m~P~le~la~~~~~~v~f~kVDvD--~~~~la----~~~~--V~-----~iPTf-~~fk~G~ 79 (114)
T cd02954 20 RFGRDWDPV------CMQMDEVLAKIAEDVSNFAVIYLVDID--EVPDFN----KMYE--LY-----DPPTV-MFFFRNK 79 (114)
T ss_pred EEECCCChh------HHHHHHHHHHHHHHccCceEEEEEECC--CCHHHH----HHcC--CC-----CCCEE-EEEECCE
Confidence 388888998 6666555532 23 578899998 666533 3333 12 22333 5778888
Q ss_pred eee
Q psy3969 80 YCG 82 (86)
Q Consensus 80 yiG 82 (86)
.++
T Consensus 80 ~v~ 82 (114)
T cd02954 80 HMK 82 (114)
T ss_pred EEE
Confidence 764
No 226
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.78 E-value=85 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=31.2
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCce--EEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDY--TVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f--~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.||.--.|.+ |-....-|+.||.-- +-+|-..| +..+ .+. +--.||-||+||+.+
T Consensus 14 kI~~HktC~s------sy~Lf~~L~nkgll~~Vkii~a~~p--~f~~--~~~------------~V~SvP~Vf~DGel~ 70 (265)
T COG5494 14 KIFTHKTCVS------SYMLFEYLENKGLLGKVKIIDAELP--PFLA--FEK------------GVISVPSVFIDGELV 70 (265)
T ss_pred EEEEecchHH------HHHHHHHHHhcCCCCCceEEEcCCC--hHHH--hhc------------ceeecceEEEcCeEE
Confidence 4555545544 666777788888743 34444422 2211 111 123689999999865
No 227
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=36.74 E-value=20 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=13.5
Q ss_pred EEEEcccCchhchHHHHHHHHHHHh
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDS 30 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~ 30 (86)
|.|||.+||++ +=...+..-|..
T Consensus 2 IvYsS~TGNTk--kvA~aI~~~l~~ 24 (160)
T PF12641_consen 2 IVYSSRTGNTK--KVAEAIAEALGA 24 (160)
T ss_pred EEEECCCChHH--HHHHHHHHHCCC
Confidence 67889999953 333333344433
No 228
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.58 E-value=40 Score=22.06 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=24.2
Q ss_pred chhchHHHHHHHHHHHhCCCceEEEE
Q psy3969 14 VKGVKKRQQRVLMILDSKNIDYTVID 39 (86)
Q Consensus 14 n~~vK~~q~~a~~lL~~k~I~f~eiD 39 (86)
.++|+-+...++.+++.+||+...||
T Consensus 54 ~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 54 APQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred cChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 47899999999999999999999998
No 229
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=35.93 E-value=73 Score=21.79 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=20.3
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+.|+|.|.+||++ +=.+++...|.. ...+.+|+.
T Consensus 1 ~i~IiY~S~tGnTe--~vA~~Ia~~l~~--~~~~i~~~~ 35 (167)
T TIGR01752 1 KIGIFYGTDTGNTE--GIAEKIQKELGE--DDVDVFNIA 35 (167)
T ss_pred CEEEEEECCCChHH--HHHHHHHHHhCC--CceEEEEcc
Confidence 56788899999954 223333333432 335666665
No 230
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=35.10 E-value=1.2e+02 Score=26.28 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeecc
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVF 84 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgy 84 (86)
+-..+.+|...|+++||..+.||+.- -.|-..+.+.+... + .-.-|.+++...||+
T Consensus 554 ~v~~Al~Aa~~L~~~GI~~~VId~~~-lkPlD~~~i~~~~k---~--------~~~vVtvEe~~~GG~ 609 (677)
T PLN02582 554 AVQSCLAAASLLERHGLSATVADARF-CKPLDRALIRSLAK---S--------HEVLITVEEGSIGGF 609 (677)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCc-CCCCCHHHHHHHhh---h--------CCEEEEECCCCCCcH
Confidence 34568888899999999999999941 33443433322222 1 112455677667776
No 231
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=35.06 E-value=18 Score=16.01 Aligned_cols=8 Identities=38% Similarity=1.091 Sum_probs=6.2
Q ss_pred CeEEeCCe
Q psy3969 72 PQIFNEED 79 (86)
Q Consensus 72 PQIFigd~ 79 (86)
||+|+++.
T Consensus 1 ~q~wn~~t 8 (14)
T PF03128_consen 1 PQVWNDDT 8 (14)
T ss_pred CceecCCC
Confidence 78888764
No 232
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=34.34 E-value=1e+02 Score=18.12 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=22.9
Q ss_pred cEEEEEcccCchh-chHHHHHHHHHHHhC-CCceEEEEccCCCCHh
Q psy3969 4 PYKISNTVRGVKG-VKKRQQRVLMILDSK-NIDYTVIDITEPGKEN 47 (86)
Q Consensus 4 ~~~y~ss~sgn~~-vK~~q~~a~~lL~~k-~I~f~eiDI~~~~d~~ 47 (86)
+..|+++-|+... +...-.++-..++.. ++.+-.+|++ .+++
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~ 60 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--AEKD 60 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--chHH
Confidence 3566777776632 233333333444444 3778888887 4443
No 233
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=33.82 E-value=41 Score=19.77 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCCceEEEE
Q psy3969 19 KRQQRVLMILDSKNIDYTVID 39 (86)
Q Consensus 19 ~~q~~a~~lL~~k~I~f~eiD 39 (86)
..+...+.+|+..||+|+.+-
T Consensus 43 ~~~~~f~~~L~~~~i~~~v~i 63 (74)
T PF02244_consen 43 EKLEEFEELLKEHGIEYEVLI 63 (74)
T ss_dssp GGHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEe
Confidence 357889999999999998753
No 234
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=33.63 E-value=22 Score=22.52 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=15.8
Q ss_pred HHHHHHHhCCCceEEEEc
Q psy3969 23 RVLMILDSKNIDYTVIDI 40 (86)
Q Consensus 23 ~a~~lL~~k~I~f~eiDI 40 (86)
-++.++++.||+.+||++
T Consensus 34 tvkd~IEsLGVP~tEV~~ 51 (81)
T PF14451_consen 34 TVKDVIESLGVPHTEVGL 51 (81)
T ss_pred cHHHHHHHcCCChHHeEE
Confidence 478899999999999876
No 235
>PRK14368 Maf-like protein; Provisional
Probab=33.39 E-value=59 Score=23.63 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|-+..++.+|.|.. =+.||+..|++|+.+.-+
T Consensus 2 ~~~~~lILAS~Spr---------R~eLL~~~g~~f~v~~~~ 33 (193)
T PRK14368 2 MANSPIVLASASPR---------RSELLASAGIEFDVVPAD 33 (193)
T ss_pred CCCCcEEEeCCCHH---------HHHHHHHCCCCeEEEcCC
Confidence 56677888988876 256899999999877543
No 236
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=33.35 E-value=68 Score=25.84 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=29.1
Q ss_pred HHHHHHHHHHh-CCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 20 RQQRVLMILDS-KNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 20 ~q~~a~~lL~~-k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
.-.++..|++. .+++|-.||++. ++.+.--.|.+...
T Consensus 109 d~er~~~L~~~~~g~D~iviD~Ah-Ghs~~~i~~ik~ik 146 (346)
T PRK05096 109 DFEKTKQILALSPALNFICIDVAN-GYSEHFVQFVAKAR 146 (346)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCC-CcHHHHHHHHHHHH
Confidence 35778888884 899999999996 66676777777774
No 237
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=33.28 E-value=79 Score=20.43 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=12.7
Q ss_pred CCCeEEeCCeeeecc
Q psy3969 70 LPPQIFNEEDYCGVF 84 (86)
Q Consensus 70 tvPQIFigd~yiGgy 84 (86)
.+|-||+||+++.|.
T Consensus 136 ~tPt~~inG~~~~~~ 150 (162)
T PF13462_consen 136 GTPTFFINGKYVVGP 150 (162)
T ss_dssp SSSEEEETTCEEETT
T ss_pred cccEEEECCEEeCCC
Confidence 679999999998753
No 238
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=33.06 E-value=54 Score=19.50 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCCCceEEE
Q psy3969 19 KRQQRVLMILDSKNIDYTVI 38 (86)
Q Consensus 19 ~~q~~a~~lL~~k~I~f~ei 38 (86)
.+.++|...|++++|..+++
T Consensus 57 ~~~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 57 EEIEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp HHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEC
Confidence 45789999999999999875
No 239
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=32.97 E-value=1.3e+02 Score=20.55 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=32.3
Q ss_pred hchHHHHHHHHHHHhCCCc--eEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 16 GVKKRQQRVLMILDSKNID--YTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 16 ~vK~~q~~a~~lL~~k~I~--f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
.+.+-+.+....|...||+ ++++-++ ..+.+++. . ..|.|.+||.-+
T Consensus 24 ~L~~av~~l~~~L~~~Giev~l~~~~l~--~~~~~~~~----~-------------~S~~I~inG~pi 72 (120)
T PF10865_consen 24 TLREAVKELAPVLAPLGIEVRLEEIELD--EEEFARQP----L-------------ESPTIRINGRPI 72 (120)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEEECC--hHHHhhcc----c-------------CCCeeeECCEeh
Confidence 4566677778889999986 6777776 33333322 2 358899998876
No 240
>PRK12361 hypothetical protein; Provisional
Probab=32.39 E-value=1.4e+02 Score=24.37 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=36.3
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHh
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~ 55 (86)
+++..+++...||+..-.+.-++++..|... ++|+.+--. ...++.+..++.
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~--~~~~a~~la~~~ 293 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTT--PEISAEALAKQA 293 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECC--CCccHHHHHHHH
Confidence 4577889999999988777788889999875 677655444 334444444443
No 241
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=31.81 E-value=1e+02 Score=22.19 Aligned_cols=43 Identities=5% Similarity=0.038 Sum_probs=33.8
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
+.++|+|-.||= |..=.+.|+++|++.+.+... .+..++++.|
T Consensus 27 ~~~vyksPnCGC------C~~w~~~mk~~Gf~Vk~~~~~------d~~alK~~~g 69 (149)
T COG3019 27 EMVVYKSPNCGC------CDEWAQHMKANGFEVKVVETD------DFLALKRRLG 69 (149)
T ss_pred eEEEEeCCCCcc------HHHHHHHHHhCCcEEEEeecC------cHHHHHHhcC
Confidence 568999999999 999999999999888877765 2444555555
No 242
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=31.21 E-value=1e+02 Score=20.53 Aligned_cols=54 Identities=7% Similarity=-0.010 Sum_probs=32.2
Q ss_pred ccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe
Q psy3969 11 VRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN 76 (86)
Q Consensus 11 ~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi 76 (86)
|.=+....++-++-....... +++-.+||- .+.+.=++..++.| - ++-=||+|+
T Consensus 31 C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--~~R~vSn~IAe~~~--V-------~HeSPQ~il 84 (105)
T PF11009_consen 31 CPISAMALREFEKFWEESPDE-IPVYYLDVI--EYRPVSNAIAEDFG--V-------KHESPQVIL 84 (105)
T ss_dssp -HHHHHHHHHHHHHHHHHT-----EEEEEGG--GGHHHHHHHHHHHT-------------SSEEEE
T ss_pred ChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--eCchhHHHHHHHhC--C-------CcCCCcEEE
Confidence 333444555555544444434 999999998 78888889999987 2 356699875
No 243
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=30.81 E-value=1.2e+02 Score=18.72 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=18.9
Q ss_pred EEEEEcccCchhchHHHHHHHHHHH----h---CCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILD----S---KNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~----~---k~I~f~eiDI~ 41 (86)
..||++-|+. |......|+ . ..+.|-.+|++
T Consensus 22 v~F~a~wC~~------Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 22 VDVYQEWCGP------CKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred EEEECCcCHh------HHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 4678888888 554443332 2 23667777776
No 244
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=30.43 E-value=1e+02 Score=19.52 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=25.2
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNID 34 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~ 34 (86)
||+++--.+.+-+..-.+++.+|++.|.+
T Consensus 1 IYlAgp~F~~~~~~~~~~~~~~L~~~g~~ 29 (113)
T PF05014_consen 1 IYLAGPFFSEEQKARVERLREALEKNGFE 29 (113)
T ss_dssp EEEESGGSSHHHHHHHHHHHHHHHTTTTE
T ss_pred CEEeCCcCCHHHHHHHHHHHHHHHhCCCE
Confidence 68888778888888899999999999983
No 245
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=30.23 E-value=65 Score=20.58 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=23.5
Q ss_pred hhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 15 KGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 15 ~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
++++.+...++.+++.+|++...||-.
T Consensus 58 pqi~~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 58 PQVAYMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred chHHHHHHHHHHHhhhcCCCEEEeChh
Confidence 688889999999999999999988763
No 246
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=30.04 E-value=53 Score=25.21 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=25.1
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCC
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNI 33 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I 33 (86)
+=+|+++||..+.+-+..|.++|+..|-
T Consensus 32 ~gIt~v~GN~~~~~~~~Na~~ll~~~g~ 59 (318)
T cd02654 32 LGLSAVSGNCWLSAVTYNVLRMLELAGA 59 (318)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHhCC
Confidence 4589999999999999999999998874
No 247
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=29.91 E-value=29 Score=18.98 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=9.7
Q ss_pred HHHHHHHHhCCCceE
Q psy3969 22 QRVLMILDSKNIDYT 36 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~ 36 (86)
...+.+|.++||+|.
T Consensus 7 ~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 7 AQLKRILDEHGIEFP 21 (35)
T ss_dssp HHHHHHHHHHT---S
T ss_pred HHHHHHHHHcCCCCC
Confidence 467889999999884
No 248
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=29.85 E-value=89 Score=20.16 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=27.7
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCce
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDY 35 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f 35 (86)
+..+.|..++++++.=.+.+...|+..|+.+
T Consensus 31 y~VI~Tg~S~rh~~aia~~v~~~~k~~~~~~ 61 (99)
T TIGR00090 31 YFVIASGTSSRHVKAIADNVEEELKEAGLKP 61 (99)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 6778999999999999999999999988765
No 249
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=29.56 E-value=1.3e+02 Score=17.86 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=9.3
Q ss_pred CCceEEEEccCCCCHh
Q psy3969 32 NIDYTVIDITEPGKEN 47 (86)
Q Consensus 32 ~I~f~eiDI~~~~d~~ 47 (86)
.+.|-.+|++ .+++
T Consensus 50 ~~~~~~id~~--~~~~ 63 (103)
T cd03001 50 IVKVGAVDAD--VHQS 63 (103)
T ss_pred CceEEEEECc--chHH
Confidence 4777888886 4443
No 250
>PF10553 MSV199: MSV199 domain; InterPro: IPR018879 This entry represents ORF MSV199 (Q9YVP3 from SWISSPROT), an MTG motif gene family protein from Melanoplus sanguinipes entomopoxvirus (MsEPV) [].
Probab=29.56 E-value=67 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHhCCCceEEEEccC
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDITE 42 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~~ 42 (86)
.+.+++.-+.+|++++|+|+++--.+
T Consensus 53 ~~~qk~~F~k~Lk~nnI~y~ei~y~d 78 (139)
T PF10553_consen 53 YKEQKKNFKKMLKNNNIEYKEIKYND 78 (139)
T ss_pred HHHHHHHHHHHHHhCCCChhccccCC
Confidence 67788889999999999999998763
No 251
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=29.49 E-value=2.5e+02 Score=21.64 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
+...+.+|...|+.+||+.+.||+.. -.|-..+.+.+..
T Consensus 212 ~~~~a~eAa~~L~~~Gi~v~vi~~~~-l~Pld~~~i~~~~ 250 (327)
T PRK09212 212 QVKLALEAAELLEKEGISVEVIDLRT-LRPLDTETIIESV 250 (327)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEec-CCCCCHHHHHHHH
Confidence 44668889999999999999999942 3444444444433
No 252
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=29.44 E-value=55 Score=22.87 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=20.3
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhC
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSK 31 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k 31 (86)
..||+||-+++.-.=||+++.+......
T Consensus 4 ~~iyVss~TPfmSavKRv~K~L~~~~k~ 31 (144)
T PF12328_consen 4 KVIYVSSKTPFMSAVKRVRKLLDKAEKR 31 (144)
T ss_dssp TEEE--SS--HHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCchHHHHHHHHHHHHhhhcc
Confidence 5799999999999999999888877664
No 253
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=29.38 E-value=97 Score=23.98 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=28.3
Q ss_pred cEEEEEcccCchhchHHHHHHHHHHHhCCCceEEE
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVI 38 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~ei 38 (86)
..+||.++.++.---.--..+.++|+..|+++...
T Consensus 163 ~V~~f~gC~~~~~~~~~~~a~v~vL~~~G~~v~~~ 197 (397)
T TIGR03379 163 QVAYFHGCYVNYNHPQLGKDLVKVLNAMNIGVQLL 197 (397)
T ss_pred cEEEeCCcccccCChHHHHHHHHHHHHCCcEEEeC
Confidence 46889998777665666688999999999998754
No 254
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=29.35 E-value=36 Score=22.91 Aligned_cols=57 Identities=7% Similarity=0.025 Sum_probs=32.7
Q ss_pred HHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeeeccC
Q psy3969 24 VLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85 (86)
Q Consensus 24 a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiGgyd 85 (86)
...++++.|++-+++.-.- .+++.++.+.+....-++ .+-.-+|-+++||++.=|.|
T Consensus 126 l~~~a~~~Gld~~~~~~~~-~~~~~~~~l~~~~~~a~~----~gi~gvPtfvv~g~~~~G~~ 182 (192)
T cd03022 126 LAAVAAAAGLDADELLAAA-DDPAVKAALRANTEEAIA----RGVFGVPTFVVDGEMFWGQD 182 (192)
T ss_pred HHHHHHHcCCCHHHHHHHc-CCHHHHHHHHHHHHHHHH----cCCCcCCeEEECCeeecccc
Confidence 5567788888654433211 356666665554410001 13446899999999875544
No 255
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=29.28 E-value=1.5e+02 Score=21.50 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=27.5
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCC-ceEEEEcc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNI-DYTVIDIT 41 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I-~f~eiDI~ 41 (86)
+-++--.|-+ -+++...|+.+.+..|| +++.||++
T Consensus 27 ~al~~~YGq~-~~~El~~a~~i~~~l~v~~~~~i~l~ 62 (209)
T PF06508_consen 27 YALTFDYGQR-HRRELEAAKKIAKKLGVKEHEVIDLS 62 (209)
T ss_dssp EEEEEESSST-TCHHHHHHHHHHHHCT-SEEEEEE-C
T ss_pred EEEEEECCCC-CHHHHHHHHHHHHHhCCCCCEEeeHH
Confidence 3355556777 88899999999999999 99999996
No 256
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=29.26 E-value=50 Score=21.49 Aligned_cols=16 Identities=13% Similarity=0.524 Sum_probs=13.7
Q ss_pred CCCCCeEEeCCeeeec
Q psy3969 68 NPLPPQIFNEEDYCGV 83 (86)
Q Consensus 68 ~~tvPQIFigd~yiGg 83 (86)
.+.-|.||+|++++|.
T Consensus 39 ~~~~~~v~vdg~~ig~ 54 (117)
T PF11008_consen 39 SAVKPDVYVDGELIGE 54 (117)
T ss_pred ccccceEEECCEEEEE
Confidence 3678999999999974
No 257
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=29.25 E-value=1.8e+02 Score=24.42 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhC-CCceEEEEcc
Q psy3969 18 KKRQQRVLMILDSK-NIDYTVIDIT 41 (86)
Q Consensus 18 K~~q~~a~~lL~~k-~I~f~eiDI~ 41 (86)
-..+.+|..+|+.+ ||+.+.||+.
T Consensus 472 v~~Al~Aa~~L~~~~gi~~~Vid~~ 496 (581)
T PRK12315 472 YELGEKVAKKLKEELGIDATLINPK 496 (581)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEecC
Confidence 35688888888888 9999999994
No 258
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=28.96 E-value=1.1e+02 Score=18.01 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=21.7
Q ss_pred EEEEcccCc-hhchHHHHHHHHHHHh-CCCceEEEEcc
Q psy3969 6 KISNTVRGV-KGVKKRQQRVLMILDS-KNIDYTVIDIT 41 (86)
Q Consensus 6 ~y~ss~sgn-~~vK~~q~~a~~lL~~-k~I~f~eiDI~ 41 (86)
.||++-|+. ..+...-..+...|+. ..+.|-.+|.+
T Consensus 24 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 24 EFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred EEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 466665555 3344555555555555 45778888887
No 259
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=28.91 E-value=1.8e+02 Score=22.20 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=28.5
Q ss_pred EcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 9 NTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 9 ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
-+.+ +..+++++..++.+|...||++.+|++.
T Consensus 261 ~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~~~ 292 (337)
T PRK08674 261 RDSE-HPRIKKRVEITIDILTEAVINVIEIYPE 292 (337)
T ss_pred cCCc-cHHHHHHHHHHHHHHHhcCCCeEEEecC
Confidence 3444 7789999999999999999999999998
No 260
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=28.89 E-value=2e+02 Score=23.65 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=27.5
Q ss_pred chHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
+-..+.+|...|+.+||+.+.||+.- -.|-..+.+.+..
T Consensus 351 ~v~~Al~Aa~~L~~~GI~~~VIdl~t-lkPlD~~~i~~sv 389 (464)
T PRK11892 351 GMTYALKAAEELAKEGIDAEVIDLRT-IRPMDTETIVESV 389 (464)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCC-CCcCCHHHHHHHH
Confidence 34568888899999999999999941 4454444444444
No 261
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=28.81 E-value=2.1e+02 Score=23.88 Aligned_cols=48 Identities=8% Similarity=0.019 Sum_probs=27.4
Q ss_pred EEEEcccCchhchHHH----HHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 6 KISNTVRGVKGVKKRQ----QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q----~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
.|+++-|+.++.-++. .++...| +++.+-.+|+++ .+++.++ +.++-+
T Consensus 480 dF~A~WC~~Ck~~e~~~~~~~~v~~~l--~~~~~v~vDvt~-~~~~~~~-l~~~~~ 531 (571)
T PRK00293 480 DLYADWCVACKEFEKYTFSDPQVQQAL--ADTVLLQADVTA-NNAEDVA-LLKHYN 531 (571)
T ss_pred EEECCcCHhHHHHHHHhcCCHHHHHHh--cCCEEEEEECCC-CChhhHH-HHHHcC
Confidence 3677778885543332 2333444 368888899983 2344444 445554
No 262
>PLN02204 diacylglycerol kinase
Probab=28.67 E-value=1.8e+02 Score=25.05 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=41.7
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHh
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~ 55 (86)
+++..|++.-.||+..-++.-..+..+|...+++++.+--. ....+++.|.+.
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~--~aghA~d~~~~~ 211 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTE--RAGHAFDVMASI 211 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEec--CcchHHHHHHHH
Confidence 45678899999999888888889999999999998876554 445667666543
No 263
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=28.65 E-value=46 Score=21.27 Aligned_cols=33 Identities=3% Similarity=0.170 Sum_probs=26.4
Q ss_pred HHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 24 VLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 24 a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
++++...++|+|+..-+++ .+.+.++..+++..
T Consensus 35 l~qi~~~~~iPF~~~~~s~-ed~~~l~~~re~~~ 67 (80)
T PRK11235 35 LQYVAENGRLPFKTVLLSD-EDAALLETVRERLA 67 (80)
T ss_pred HHHHHHhCCCCCCCCCCCH-HHHHHHHHHHHHHh
Confidence 4566778999999888875 67788888888885
No 264
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=28.59 E-value=54 Score=20.88 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=13.1
Q ss_pred CCceEEEEccCCCCHhHHH
Q psy3969 32 NIDYTVIDITEPGKENEKE 50 (86)
Q Consensus 32 ~I~f~eiDI~~~~d~~~r~ 50 (86)
..+.+.|||. .+|+.-+
T Consensus 29 ~~~LeVIDv~--~~P~lAe 45 (82)
T PF07689_consen 29 RYELEVIDVL--EQPELAE 45 (82)
T ss_dssp TEEEEEEETT--TSHSHHT
T ss_pred cEEEEEEEcc--cCHhHHh
Confidence 5567999999 7888544
No 265
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=28.53 E-value=72 Score=23.52 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=24.1
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.+.+|.+|.|.. =++||+..||+|+.+--+
T Consensus 2 ~~~LiLAS~SPr---------R~elL~~~gi~f~~~~~~ 31 (193)
T COG0424 2 MPRLILASSSPR---------RRELLEQLGIPFEVIPSD 31 (193)
T ss_pred CccEEEecCCHH---------HHHHHHHCCCCeEEecCC
Confidence 467888888876 368999999999987544
No 266
>PRK05723 flavodoxin; Provisional
Probab=28.33 E-value=97 Score=21.29 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=20.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCce
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDY 35 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f 35 (86)
++.|+|.|.+||.+-= ..++...|...|++-
T Consensus 2 ~i~I~ygS~tG~ae~~--A~~la~~l~~~g~~~ 32 (151)
T PRK05723 2 KVAILSGSVYGTAEEV--ARHAESLLKAAGFEA 32 (151)
T ss_pred eEEEEEEcCchHHHHH--HHHHHHHHHHCCCce
Confidence 6789999999996543 233334566666554
No 267
>PF03708 Avian_gp85: Avian retrovirus envelope protein, gp85 ; InterPro: IPR005166 A family of a vain specific viral glycoproteins that forms a receptor-binding Gp95 polypeptide that is linked through disulphide to a membrane-spanning gp37 spike. Gp95 confers a high degree of subgroup specificity for interaction with distinct cell receptors [].; GO: 0019031 viral envelope
Probab=28.27 E-value=29 Score=26.73 Aligned_cols=14 Identities=29% Similarity=0.937 Sum_probs=12.3
Q ss_pred CeEEeCCeeeeccC
Q psy3969 72 PQIFNEEDYCGVFR 85 (86)
Q Consensus 72 PQIFigd~yiGgyd 85 (86)
=++|++.+|||.|-
T Consensus 91 ~nlf~gs~YCG~yg 104 (256)
T PF03708_consen 91 HNLFMGSEYCGAYG 104 (256)
T ss_pred cceeeccccccccc
Confidence 78999999999764
No 268
>PF09170 STN1_2: CST, Suppressor of cdc thirteen homolog, complex subunit STN1; InterPro: IPR015253 STN1 is a component of the CST complex, a complex that binds to single-stranded DNA and is required to protect telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. In addition to telomere protection, the CST complex has probably a more general role in DNA metabolism at non-telomeric sites [, ]. This entry represents a C-terminal uncharacterised domain ; PDB: 1WJ5_A.
Probab=28.22 E-value=47 Score=24.32 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.0
Q ss_pred EcccCchhchHHHHHHHHHHHhCCCceEE
Q psy3969 9 NTVRGVKGVKKRQQRVLMILDSKNIDYTV 37 (86)
Q Consensus 9 ss~sgn~~vK~~q~~a~~lL~~k~I~f~e 37 (86)
++.|...+|+.--..|.++|..+|+-|..
T Consensus 95 ~~~s~sk~i~~~FkeAiq~Lqe~G~Vfqk 123 (174)
T PF09170_consen 95 ASNSTSKQIRSIFKEAIQLLQEKGIVFQK 123 (174)
T ss_dssp ---SS-HHHHHHHHHHHHHHHHHTSEE-S
T ss_pred CCCcHHHHHHHHHHHHHHHHHHCCEEEee
Confidence 45678889999999999999999998854
No 269
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=27.56 E-value=60 Score=24.15 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=26.7
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEE
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVI 38 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~ei 38 (86)
+.||.+++.+---..-=..+..+|+..||++.+.
T Consensus 2 v~~f~GC~~~~~~~~~~~a~~~vL~~lGi~v~~~ 35 (290)
T TIGR03288 2 YAFFLGCIMPNRYPGIEKATRLTMEKLGIELLDM 35 (290)
T ss_pred eeecCCCCcCCcCcCHHHHHHHHHHHcCCeEEeC
Confidence 4678888877655666678899999999999875
No 270
>PRK03298 hypothetical protein; Provisional
Probab=27.49 E-value=41 Score=25.55 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCceEEEEcc
Q psy3969 22 QRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~ 41 (86)
.+|+.||+..|++|..+|.+
T Consensus 192 ~~Ar~Ll~drGle~v~ld~~ 211 (224)
T PRK03298 192 PQARTLAEDRGIRCVTLDYD 211 (224)
T ss_pred HHHHHHHHHcCCeEEEcCHH
Confidence 36999999999999998875
No 271
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=27.42 E-value=73 Score=20.91 Aligned_cols=28 Identities=7% Similarity=-0.215 Sum_probs=24.9
Q ss_pred chhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 14 VKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 14 n~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
-++|+-+...++.+++.++|+...||-.
T Consensus 57 ~PQi~~~~~~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 57 SPQTKMYFKQFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred ChHHHHHHHHHHHHhhhcCCCEEEeCHH
Confidence 3689999999999999999999999874
No 272
>PRK01355 azoreductase; Reviewed
Probab=27.39 E-value=1.5e+02 Score=20.82 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=26.2
Q ss_pred CCCcEEEEEcccC--chhchHHHHHHHHHHHh--CCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRG--VKGVKKRQQRVLMILDS--KNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sg--n~~vK~~q~~a~~lL~~--k~I~f~eiDI~ 41 (86)
|+|+-++.+|..+ +.--..=+..+..-|++ .+.+++.+|+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~ 45 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLN 45 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 8888888888862 22222223444555555 45889999996
No 273
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=27.38 E-value=93 Score=26.28 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=28.1
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|+++.|+|.|.+||.+-=- .++...|...|++-..++++
T Consensus 61 ~~~v~IlygSqTGnae~lA--~~la~~l~~~g~~~~v~~~~ 99 (600)
T PRK10953 61 MPGITLISASQTGNARRVA--EQLRDDLLAAKLNVNLVNAG 99 (600)
T ss_pred CCeEEEEEEcCchHHHHHH--HHHHHHHHhCCCCcEEechH
Confidence 6789999999999955322 22334467888888877775
No 274
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=26.92 E-value=2.1e+02 Score=24.14 Aligned_cols=56 Identities=23% Similarity=0.181 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee-ecc
Q psy3969 17 VKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC-GVF 84 (86)
Q Consensus 17 vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi-Ggy 84 (86)
+-..+.+|...|+.+||..+.||+.- -.|-..+.+.+... + +-+-|++++.+. ||+
T Consensus 506 ~v~~al~Aa~~L~~~gi~~~VId~~~-lkPlD~e~i~~~~~---k--------~~~vvtvEE~~~~GGl 562 (617)
T TIGR00204 506 LVPEALEVAESLNEKGIEATVVDARF-VKPLDEELILEIAA---S--------HEKLVTVEENAIMGGA 562 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCc-CCcCCHHHHHHHHh---h--------cCeEEEEECCCCccCh
Confidence 34568888888999999999999942 34443333333332 1 334566666554 554
No 275
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=26.78 E-value=97 Score=17.46 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCceEEEEc
Q psy3969 21 QQRVLMILDSKNIDYTVIDI 40 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiDI 40 (86)
...|+.+|++.|+.+..+..
T Consensus 11 ~~~a~~~l~~~g~~~~~~~~ 30 (63)
T PF03793_consen 11 YDEAKSILEAAGLTVNVVEE 30 (63)
T ss_dssp HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 67899999999997776664
No 276
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=26.72 E-value=80 Score=20.79 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 23 RVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 23 ~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
...+.-++.||+|+.+.+....+++......++.+
T Consensus 49 ~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN 83 (117)
T PF00763_consen 49 SKQKAAEKLGIEFELIELPEDISEEELLELIEKLN 83 (117)
T ss_dssp HHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 33445556799999999953345555544455443
No 277
>PRK13054 lipid kinase; Reviewed
Probab=26.09 E-value=2.3e+02 Score=21.06 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=31.0
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHh
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~ 55 (86)
|++..+++...++. .+.-..++..|.+.+++|+..--. ....+.+..++.
T Consensus 3 ~~~~~~i~N~~~~~---~~~~~~~~~~l~~~g~~~~v~~t~--~~~~a~~~a~~~ 52 (300)
T PRK13054 3 FPKSLLILNGKSAG---NEELREAVGLLREEGHTLHVRVTW--EKGDAARYVEEA 52 (300)
T ss_pred CceEEEEECCCccc---hHHHHHHHHHHHHcCCEEEEEEec--CCCcHHHHHHHH
Confidence 67778888855543 345555677899999998774443 223344444443
No 278
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.00 E-value=80 Score=19.87 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCceEEEE
Q psy3969 21 QQRVLMILDSKNIDYTVID 39 (86)
Q Consensus 21 q~~a~~lL~~k~I~f~eiD 39 (86)
+.+++.+|+..||.|+-+-
T Consensus 18 ~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 18 GRKLLSILEDNGISYEHMP 36 (76)
T ss_pred HHHHHHHHHHcCCCEeeec
Confidence 8899999999999999764
No 279
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=25.99 E-value=97 Score=17.74 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=24.6
Q ss_pred HHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 26 MILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 26 ~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
.+|+.+|+.+..++=. .+++.|+.+.+...
T Consensus 1 ~~L~~~~~~~~~i~~~--~~~~~r~~~~~~f~ 30 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGD--MSQKERQEILKKFN 30 (78)
T ss_dssp HHHHHTTSSEEEESTT--SHHHHHHHHHHHHH
T ss_pred CChHHCCCcEEEEECC--CCHHHHHHHHHHhh
Confidence 4789999999998876 67888888888763
No 280
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=25.87 E-value=1.6e+02 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=25.7
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHH-hCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILD-SKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~-~k~I~f~eiDI~ 41 (86)
|+.++..|..-+.--.+=...+...|. ..|.+.+.+|+.
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~ 40 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLA 40 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhh
Confidence 456667777554444444555666654 568999999986
No 281
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=25.78 E-value=47 Score=19.34 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=9.3
Q ss_pred eEEeCCeeee
Q psy3969 73 QIFNEEDYCG 82 (86)
Q Consensus 73 QIFigd~yiG 82 (86)
.||+||+++|
T Consensus 14 ~V~vdg~~~G 23 (71)
T PF08308_consen 14 EVYVDGKYIG 23 (71)
T ss_pred EEEECCEEec
Confidence 7999999998
No 282
>PF08722 Tn7_Tnp_TnsA_N: TnsA endonuclease N terminal; InterPro: IPR014833 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The N-terminal domain of TnsA is catalytic. ; PDB: 1F1Z_B 1T0F_B.
Probab=25.76 E-value=1.2e+02 Score=18.49 Aligned_cols=27 Identities=7% Similarity=0.155 Sum_probs=20.2
Q ss_pred CchhchHHHHHHHHHHHhCCCceEEEE
Q psy3969 13 GVKGVKKRQQRVLMILDSKNIDYTVID 39 (86)
Q Consensus 13 gn~~vK~~q~~a~~lL~~k~I~f~eiD 39 (86)
.+..++.+...++...+.+|++|..+.
T Consensus 61 ~~~~~~~k~~~~~~y~~~~g~~f~ivT 87 (88)
T PF08722_consen 61 EKPRTKEKLEIEREYWEEQGIPFRIVT 87 (88)
T ss_dssp GSHHHHHHHHHHHHHHHHCT--EEEE-
T ss_pred cChhHHHHHHHHHHHHHHcCCeEEEEc
Confidence 346778889999999999999998763
No 283
>KOG2863|consensus
Probab=25.65 E-value=38 Score=28.10 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=11.4
Q ss_pred CCCCCeEEeCCee
Q psy3969 68 NPLPPQIFNEEDY 80 (86)
Q Consensus 68 ~~tvPQIFigd~y 80 (86)
.+-||-|||||.|
T Consensus 73 ~APVlTIFIGGNH 85 (456)
T KOG2863|consen 73 KAPVLTIFIGGNH 85 (456)
T ss_pred cCceeEEEecCch
Confidence 5689999999987
No 284
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=25.40 E-value=73 Score=24.57 Aligned_cols=28 Identities=4% Similarity=-0.311 Sum_probs=24.9
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCC
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNI 33 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I 33 (86)
+=+|+++||..+.+-...|.++|+-.|-
T Consensus 32 ~gIT~v~GNv~~~~~~~Na~~vl~~~g~ 59 (326)
T PTZ00313 32 IGCICTDADCFVDDAFNVTGKLMCMMHA 59 (326)
T ss_pred EEEEEecCCccHHHHHHHHHHHHHHhCC
Confidence 3489999999999999999999999884
No 285
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=25.04 E-value=3.4e+02 Score=21.38 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhCCCceEEEEccCCCCHh
Q psy3969 18 KKRQQRVLMILDSKNIDYTVIDITEPGKEN 47 (86)
Q Consensus 18 K~~q~~a~~lL~~k~I~f~eiDI~~~~d~~ 47 (86)
+.+-++.+.+|+..++.++.+.|.++.|.+
T Consensus 39 ~~~~~~L~~~l~~~~~~~e~~~i~d~~d~~ 68 (381)
T PF09002_consen 39 KEKAERLKSVLKQRGIKVEFFEIPDEYDIE 68 (381)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--SSS-HH
T ss_pred HHHHHHHHHHHHhcCCCceEEecCChhhHH
Confidence 777889999999999999988886433444
No 286
>PRK13556 azoreductase; Provisional
Probab=24.85 E-value=1.7e+02 Score=20.59 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=25.4
Q ss_pred CCCcEEEEEcccC--chhchHHHHHHHHHHHhC--CCceEEEEcc
Q psy3969 1 MKKPYKISNTVRG--VKGVKKRQQRVLMILDSK--NIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sg--n~~vK~~q~~a~~lL~~k--~I~f~eiDI~ 41 (86)
|+|+-+..+|... +.--..=...+..-+... +.+.+.+|+.
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~ 45 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLY 45 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 8888888888763 322222233333344443 7899999996
No 287
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=24.84 E-value=1.7e+02 Score=17.71 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 18 KKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 18 K~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
+.++..+...|...++.+..+.=. .++..|..+.++..
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~f~ 75 (131)
T cd00079 38 KKMLDELAELLRKPGIKVAALHGD--GSQEEREEVLKDFR 75 (131)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECC--CCHHHHHHHHHHHH
Confidence 556788888888877777777666 67888888888774
No 288
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=24.82 E-value=1e+02 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=25.3
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCC
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNI 33 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I 33 (86)
+-+|+++||..+.+-...|.++|+-.|.
T Consensus 32 ~gIttv~GN~~~~~~~~Nal~~l~~~g~ 59 (313)
T PRK09955 32 LGITIVAGNQTLDKTLINGLNVCQKLEI 59 (313)
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999884
No 289
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=24.67 E-value=81 Score=25.74 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCCCH
Q psy3969 20 RQQRVLMILDSKNIDYTVIDITEPGKE 46 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~~~~d~ 46 (86)
.++.|+++|+..||.|.-+.|- .||
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvw--ndP 88 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVW--NDP 88 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEe--cCC
Confidence 4789999999999999999996 555
No 290
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=24.52 E-value=3.5e+02 Score=21.22 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=28.8
Q ss_pred EEEEEc--ccCchhchHHHHHHHH-HHHhCCCceEE-EEccCCCCHhHHHHHHHhcC
Q psy3969 5 YKISNT--VRGVKGVKKRQQRVLM-ILDSKNIDYTV-IDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 5 ~~y~ss--~sgn~~vK~~q~~a~~-lL~~k~I~f~e-iDI~~~~d~~~r~~M~~~~g 57 (86)
.|++|+ ..|+.+. ...+..+ .|...|+.... ++++.-.+.+....|.+...
T Consensus 321 ~vi~s~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~ 375 (422)
T TIGR00649 321 TVVFSAPPIPGNENI--AVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLK 375 (422)
T ss_pred EEEEECCCCCcHHHH--HHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhC
Confidence 355555 4454323 4455555 67778886544 78874445555666666553
No 291
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.48 E-value=2e+02 Score=23.45 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=36.4
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
++.|+|.|..||++..- +.+-.=|.+.||+-+.++++. + .+.+.++...
T Consensus 248 ~V~l~Y~smyg~T~~ma--~aiaegl~~~gv~v~~~~~~~--~--~~~eI~~~i~ 296 (388)
T COG0426 248 KVDLIYDSMYGNTEKMA--QAIAEGLMKEGVDVEVINLED--A--DPSEIVEEIL 296 (388)
T ss_pred eEEEEEecccCCHHHHH--HHHHHHhhhcCCceEEEEccc--C--CHHHHHHHHh
Confidence 48899999999977653 455566889999999999983 2 4555555543
No 292
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=24.37 E-value=1.2e+02 Score=19.10 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCceEEEEccCCCCHhHHH
Q psy3969 19 KRQQRVLMILDSKNIDYTVIDITEPGKENEKE 50 (86)
Q Consensus 19 ~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~ 50 (86)
...+....-|++.| |...|++ .|+.++.
T Consensus 62 ~~~~~l~~~L~~~g--y~~~dls--~ne~~k~ 89 (91)
T PF00585_consen 62 EDLEELIERLKALG--YPYEDLS--DNELAKL 89 (91)
T ss_dssp HHHHHHHHHHTSSS---EEECTT--T-HHHHH
T ss_pred HHHHHHHHHHHHcC--CCeEECC--CCHHHHh
Confidence 44577777888777 6777999 7887764
No 293
>KOG4747|consensus
Probab=23.90 E-value=49 Score=23.77 Aligned_cols=32 Identities=25% Similarity=0.093 Sum_probs=26.3
Q ss_pred EEcccCchhchHHHHHHHHHHHhCCCceEEEE
Q psy3969 8 SNTVRGVKGVKKRQQRVLMILDSKNIDYTVID 39 (86)
Q Consensus 8 ~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiD 39 (86)
+||+-|-..||+-|..+....+..+++--.-+
T Consensus 85 ssssIGa~kvk~~c~~~~~~~~~~n~egcvr~ 116 (150)
T KOG4747|consen 85 SSSSIGALKVKKVCVGFNEFCEAGNIEGCVRC 116 (150)
T ss_pred chhhhhHHHHHHHHHHHHHHHhhccchhHhhc
Confidence 46777889999999999999999988754333
No 294
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=23.79 E-value=77 Score=23.87 Aligned_cols=29 Identities=21% Similarity=0.112 Sum_probs=25.1
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNID 34 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~ 34 (86)
+=+|+++||..+..-...|..+|+..|-.
T Consensus 28 ~gIt~v~Gn~~~~~~~~na~~ll~~~g~~ 56 (302)
T cd02651 28 LGITTVAGNVPLEKTTRNALKLLTLLGRT 56 (302)
T ss_pred EEEEeccCeecHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999999988753
No 295
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=23.77 E-value=25 Score=24.96 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=26.0
Q ss_pred HHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeee
Q psy3969 24 VLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYC 81 (86)
Q Consensus 24 a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yi 81 (86)
...++...|++-++++-.- .+++.++.+.+.....++ .+-.-+|-|++||+|+
T Consensus 126 L~~~a~~~Gld~~~f~~~l-~s~~~~~~v~~~~~~a~~----~gI~gtPtfiInGky~ 178 (207)
T PRK10954 126 IRDVFIKAGVKGEDYDAAW-NSFVVKSLVAQQEKAAAD----LQLRGVPAMFVNGKYM 178 (207)
T ss_pred HHHHHHHcCCCHHHHHHHH-hChHHHHHHHHHHHHHHH----cCCCCCCEEEECCEEE
Confidence 4556677787655444321 233333322221100000 1223579999999995
No 296
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=23.67 E-value=2.2e+02 Score=18.56 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=26.0
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+|.+.|.+.+......-.++..-|.+++++.-.|||.
T Consensus 4 yl~i~sf~~~~~~~~~~~~~~~~~~~~~~~~lIIDlR 40 (169)
T PF03572_consen 4 YLRIPSFSENKSFDEELDEFLDKLKSKDTDGLIIDLR 40 (169)
T ss_dssp EEEES-BCCGHHHHHHHHHHHHHHHHTTSSEEEEE-T
T ss_pred EEEeCcccCccccHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 5666777544556666777777777789999999996
No 297
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=23.54 E-value=1.2e+02 Score=25.46 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=28.6
Q ss_pred CCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 2 KKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 2 ~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+++.|+|.|-+||.+-- ..++...|.+.|++...++++
T Consensus 59 ~~i~IlygSqTGnae~~--A~~l~~~l~~~g~~~~v~~~~ 96 (597)
T TIGR01931 59 KRVTILYGSQTGNARRL--AKRLAEKLEAAGFSVRLSSAD 96 (597)
T ss_pred CeEEEEEECCchHHHHH--HHHHHHHHHhCCCccEEechH
Confidence 56889999999996533 334446677889888888886
No 298
>KOG3354|consensus
Probab=23.52 E-value=1.5e+02 Score=22.07 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=36.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
.+|+-.+||. .+-.-++.|-+..|.+|.+-|=- ..|+.++.|.+-.
T Consensus 14 ~i~vmGvsGs----GKSTigk~L~~~l~~~F~dgDd~--Hp~~NveKM~~Gi 59 (191)
T KOG3354|consen 14 VIVVMGVSGS----GKSTIGKALSEELGLKFIDGDDL--HPPANVEKMTQGI 59 (191)
T ss_pred eEEEEecCCC----ChhhHHHHHHHHhCCcccccccC--CCHHHHHHHhcCC
Confidence 5777778777 34778899999999998877766 7899999998843
No 299
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=23.42 E-value=2e+02 Score=19.21 Aligned_cols=20 Identities=5% Similarity=0.220 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCceEEEEcc
Q psy3969 22 QRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI~ 41 (86)
.+.+..|.+.|+++..+|+.
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~ 22 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLS 22 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCT
T ss_pred HHHHHHHHHCCCEEEEEecc
Confidence 46778899999999999998
No 300
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.27 E-value=1.7e+02 Score=17.07 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=19.2
Q ss_pred hhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 15 KGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 15 ~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.+....+..+...|.+.|+..+ +|..
T Consensus 11 ~~~~~~a~~~~~~Lr~~g~~v~-~d~~ 36 (91)
T cd00860 11 DEHLDYAKEVAKKLSDAGIRVE-VDLR 36 (91)
T ss_pred chHHHHHHHHHHHHHHCCCEEE-EECC
Confidence 4567778888888889998764 4655
No 301
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=23.10 E-value=83 Score=23.33 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 18 KKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 18 K~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+...+.|+.|.+..||+|..|||+
T Consensus 59 ~~~~~~A~~la~~lgi~~~~i~i~ 82 (242)
T PF02540_consen 59 EEDIEDAKELAEKLGIEYIVIDID 82 (242)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEESH
T ss_pred hHHHHHHHHHHHHhCCCeeccchH
Confidence 566788999999999999999997
No 302
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=22.99 E-value=1.2e+02 Score=21.77 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=21.8
Q ss_pred CCCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 1 ~~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
|.++ ++.+|.|.. =+.||+..|++|+.+.-+
T Consensus 1 ~~~~-lILAS~Spr---------R~elL~~~g~~f~v~~~~ 31 (183)
T TIGR00172 1 MTKE-LILASQSPR---------RKELLEELGISFEQIVSE 31 (183)
T ss_pred CCCC-EEEeCCCHH---------HHHHHHHCCCCeEEEcCC
Confidence 4554 567777765 357899999999976543
No 303
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.97 E-value=1.1e+02 Score=23.46 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCce---------EEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEe--CCeeeeccC
Q psy3969 22 QRVLMILDSKNIDY---------TVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFN--EEDYCGVFR 85 (86)
Q Consensus 22 ~~a~~lL~~k~I~f---------~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFi--gd~yiGgyd 85 (86)
....++|....|+| -.+.|+.+..+.+++.+++.-|. .||-.+. |+.|.|-++
T Consensus 20 ~~v~n~lgdLdV~~~i~~~~~~wv~vtl~GeD~eva~Nll~eefGe-----------i~~~le~v~Ge~y~G~l~ 83 (225)
T PF09883_consen 20 SLVENDLGDLDVEWDIGITKDDWVKVTLEGEDEEVAANLLREEFGE-----------IVYSLEPVKGETYVGTLI 83 (225)
T ss_pred HHHHHhhcCeeEEEEeccccCCceEEEEecCcHHHHHHHHHHHhCC-----------CCchhcccCCceEEEEEE
Confidence 34556666666665 33445544456678899999982 5688888 999999654
No 304
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=22.96 E-value=3e+02 Score=20.68 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=22.3
Q ss_pred cEEEEEcccCchhchHHHHHHHHHH----HhCCCceEEEEcc
Q psy3969 4 PYKISNTVRGVKGVKKRQQRVLMIL----DSKNIDYTVIDIT 41 (86)
Q Consensus 4 ~~~y~ss~sgn~~vK~~q~~a~~lL----~~k~I~f~eiDI~ 41 (86)
...||+|-|+. |++..-+| +..|+.+.-|+++
T Consensus 170 Lv~F~AswCp~------C~~~~P~L~~la~~yg~~Vi~VsvD 205 (271)
T TIGR02740 170 LFFFFKSDCPY------CHQQAPILQAFEDRYGIEVLPVSVD 205 (271)
T ss_pred EEEEECCCCcc------HHHHhHHHHHHHHHcCcEEEEEeCC
Confidence 35688888999 66555444 4567777778876
No 305
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=22.74 E-value=2.8e+02 Score=19.51 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=29.6
Q ss_pred cCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 12 RGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 12 sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
+|+..=...++.|..+|+..||+|+.--++--..|+...+..++..
T Consensus 7 ~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~ 52 (150)
T PF00731_consen 7 MGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYE 52 (150)
T ss_dssp ESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTT
T ss_pred eCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhc
Confidence 4444445678999999999999997644442236666666666653
No 306
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=22.68 E-value=1.8e+02 Score=20.14 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=24.0
Q ss_pred EEEEEcccCchhchHHHHHHHHHH-------HhCCCceEEEEccCCCCHhHHH
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMIL-------DSKNIDYTVIDITEPGKENEKE 50 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL-------~~k~I~f~eiDI~~~~d~~~r~ 50 (86)
..||++-|+. |++....| ...++.|-.||++ .+++.-+
T Consensus 52 V~Fya~wC~~------Ck~l~p~l~~la~~~~~~~v~f~~VDvd--~~~~la~ 96 (152)
T cd02962 52 VEFFTTWSPE------CVNFAPVFAELSLKYNNNNLKFGKIDIG--RFPNVAE 96 (152)
T ss_pred EEEECCCCHH------HHHHHHHHHHHHHHcccCCeEEEEEECC--CCHHHHH
Confidence 4577777776 55444333 2245889999998 6665443
No 307
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=22.45 E-value=58 Score=24.56 Aligned_cols=19 Identities=11% Similarity=0.420 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCceEEEEc
Q psy3969 22 QRVLMILDSKNIDYTVIDI 40 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI 40 (86)
.+|+.||+..|++|..+|-
T Consensus 194 ~~a~~ll~~~glef~~ldp 212 (228)
T PF01939_consen 194 PQARELLEDRGLEFVELDP 212 (228)
T ss_dssp HHHHHHHHHHT-EEEE---
T ss_pred HHHHHHHHHcCCEEEEecc
Confidence 4689999999999999995
No 308
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=22.45 E-value=2.1e+02 Score=23.44 Aligned_cols=54 Identities=7% Similarity=-0.053 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCCeeee
Q psy3969 20 RQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCG 82 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd~yiG 82 (86)
+.=.|+.||...||+--.--+. .+++...+..+..| . ++...=+||-.|++--+
T Consensus 4 hEYqaKelf~~~GiPvp~g~v~--~s~eea~~~a~~lg--~-----~~~VvKaQV~aGGRGKa 57 (387)
T COG0045 4 HEYQAKELFAKYGIPVPPGYVA--TSPEEAEEAAKELG--G-----GPVVVKAQVHAGGRGKA 57 (387)
T ss_pred HHHHHHHHHHHcCCCCCCceee--eCHHHHHHHHHHhC--C-----CcEEEEeeeeecCcccc
Confidence 4567999999999998877777 67888777777775 1 13455578887776543
No 309
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=68 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.031 Sum_probs=25.9
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+|+=--|.+ |.||+++.--++|+++++-+.
T Consensus 3 LYIYdHCPf------cvrarmi~Gl~nipve~~vL~ 32 (215)
T COG2999 3 LYIYDHCPF------CVRARMIFGLKNIPVELHVLL 32 (215)
T ss_pred eeEeccChH------HHHHHHHhhccCCChhhheec
Confidence 455566788 999999999999999998886
No 310
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=22.16 E-value=1.5e+02 Score=20.50 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHhCCCceEEEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeE
Q psy3969 25 LMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQI 74 (86)
Q Consensus 25 ~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQI 74 (86)
...|...++.-..+-|+- .++....+|.+.-| -..++||.
T Consensus 69 ~~ML~~e~~~p~~~a~Dr-PS~Kll~Fl~Khy~---------L~~~ipQ~ 108 (120)
T PF05301_consen 69 DHMLQEENVSPHQLAIDR-PSPKLLSFLKKHYG---------LQRYIPQS 108 (120)
T ss_pred HHHHHHcCCCcccceecC-CcHHHHHHHHHhcC---------CCcCCCCC
Confidence 346778888888888875 48899999999997 23588984
No 311
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=22.14 E-value=1.4e+02 Score=17.86 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=8.1
Q ss_pred CCceEEEEcc
Q psy3969 32 NIDYTVIDIT 41 (86)
Q Consensus 32 ~I~f~eiDI~ 41 (86)
.+.|-.+|++
T Consensus 44 ~v~f~~vd~~ 53 (103)
T cd02982 44 KLLFVVVDAD 53 (103)
T ss_pred eEEEEEEchH
Confidence 4888888887
No 312
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=22.10 E-value=1.7e+02 Score=23.47 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 20 RQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 20 ~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
.+..|-..|...||+-+.||+-- -.|-.++-..+-..
T Consensus 214 ~al~AAe~l~~~Gis~EVIDLRT-l~PlD~etIi~Svk 250 (324)
T COG0022 214 TALEAAEELEKEGISAEVIDLRT-LSPLDKETIIASVK 250 (324)
T ss_pred HHHHHHHHHhhcCCCeEEEeccc-cCccCHHHHHHHHH
Confidence 34445555556699999999931 56665655554443
No 313
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=21.91 E-value=2.9e+02 Score=20.28 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=31.3
Q ss_pred CCcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 2 KKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 2 ~~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
+++.+.|++...+. ......++..++..|++..++.|. ...+....+.+..
T Consensus 132 k~igvl~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~v~--~~~~~~~~~~~l~ 182 (294)
T PF04392_consen 132 KRIGVLYDPSEPNS--VAQIEQLRKAAKKLGIELVEIPVP--SSEDLEQALEALA 182 (294)
T ss_dssp -EEEEEEETT-HHH--HHHHHHHHHHHHHTT-EEEEEEES--SGGGHHHHHHHHC
T ss_pred CEEEEEecCCCccH--HHHHHHHHHHHHHcCCEEEEEecC--cHhHHHHHHHHhh
Confidence 34545565544432 456677788888999999999997 4555555555443
No 314
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=21.89 E-value=2.4e+02 Score=19.44 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=27.9
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.|++.+-.-...++.+...++.++...++.+.+|...
T Consensus 75 ~v~l~d~~~~~~~~~r~~~~~e~~~~~~~~v~~v~~~ 111 (155)
T PF10432_consen 75 VVLLRDPEDHPRVQRRVEITREIAEDRGVRVIEVEAE 111 (155)
T ss_dssp EEEEC-TCCHHHHHHHHHHHHHHHTTCSSEEEEE--S
T ss_pred EEEEEcCCccccchhhhHHHHHHHHhcCCcEEEEecC
Confidence 3445555566777889999999999999999999997
No 315
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=21.88 E-value=86 Score=21.25 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=28.7
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCC-ceEEEEcc
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNI-DYTVIDIT 41 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I-~f~eiDI~ 41 (86)
+++-+.-.+...+.+-...+..+|+..|| +|.....+
T Consensus 115 ~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~ 152 (173)
T PF00587_consen 115 HIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSS 152 (173)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEE
T ss_pred EEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcC
Confidence 34444444667778888999999999999 89888876
No 316
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=21.81 E-value=1.5e+02 Score=19.40 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 18 KKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 18 K~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.++...|+.+|+..||+...-|+-
T Consensus 63 ~rNv~~a~~~L~~~gi~I~a~dvG 86 (114)
T PF03975_consen 63 ERNVEAARELLAEEGIPIVAEDVG 86 (114)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEE-
T ss_pred HHHHHHHHHHHHHCCCcEEEeeCC
Confidence 467899999999999999998885
No 317
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=21.64 E-value=1.8e+02 Score=18.84 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=25.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhC---CCceEEEEccCCCCHhHHHH
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSK---NIDYTVIDITEPGKENEKEF 51 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k---~I~f~eiDI~~~~d~~~r~~ 51 (86)
.+|+++-+.+. ...-...+++|+.. -.+.+.|||. .+|+.-+.
T Consensus 7 rLyvag~~p~S--~~ai~nl~~i~e~~l~g~y~LeVIDv~--~qP~lAE~ 52 (87)
T TIGR02654 7 KLYVAGNTPNS--VRALKTLKNILETEFQGVYALKVIDVL--KNPQLAEE 52 (87)
T ss_pred EEEEeCCCchH--HHHHHHHHHHHHHhcCCceEEEEEEcc--cCHhHHhH
Confidence 46777766542 23334444444432 2677999999 78886553
No 318
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=21.63 E-value=3.1e+02 Score=20.89 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=35.9
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccC
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITE 42 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~ 42 (86)
|...|+=..+...+.+-=.++++..|...|++..+++++.
T Consensus 33 ~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~ 72 (224)
T COG3340 33 KTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSK 72 (224)
T ss_pred ceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccC
Confidence 3677888888888888889999999999999999999984
No 319
>PRK04247 hypothetical protein; Provisional
Probab=21.50 E-value=83 Score=23.98 Aligned_cols=19 Identities=11% Similarity=0.436 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCceEEEEc
Q psy3969 22 QRVLMILDSKNIDYTVIDI 40 (86)
Q Consensus 22 ~~a~~lL~~k~I~f~eiDI 40 (86)
.+|+.||+..|++|..++.
T Consensus 217 ~~A~~ll~~~Gle~~~l~p 235 (238)
T PRK04247 217 DRARRLLEKEGLEFVKLEP 235 (238)
T ss_pred HHHHHHHHHcCCeEEEecC
Confidence 4799999999999998875
No 320
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=21.25 E-value=64 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCceEEEEccCCCCHhHHHHHHHhc
Q psy3969 23 RVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56 (86)
Q Consensus 23 ~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~~~ 56 (86)
....-|.+-++++-||-++ |..+|++.|..+
T Consensus 82 Ai~DAl~~~~~P~VEVHiS---Ni~aRE~fR~~S 112 (140)
T cd00466 82 ALRDALAAVSIPVIEVHIS---NIHAREEFRHHS 112 (140)
T ss_pred HHHHHHHcCCCCEEEEecC---Cccccccccccc
Confidence 4556778889999999998 899999998887
No 321
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.18 E-value=1.6e+02 Score=19.50 Aligned_cols=30 Identities=0% Similarity=0.040 Sum_probs=19.6
Q ss_pred EEEEcccCchh-------chHHHHHHHHHHHhCCCce
Q psy3969 6 KISNTVRGVKG-------VKKRQQRVLMILDSKNIDY 35 (86)
Q Consensus 6 ~y~ss~sgn~~-------vK~~q~~a~~lL~~k~I~f 35 (86)
+.|..+|...+ +..|....+.+..++|++.
T Consensus 2 ~~Y~RvSt~~q~~~~~~sle~Q~~~l~~~a~~~g~~i 38 (140)
T cd03770 2 ALYCRLSRDDDLDGESNSIENQKAILEEYAKENGLEN 38 (140)
T ss_pred EEEEEECcccccccccCCHHHHHHHHHHHHHHCCCEE
Confidence 35666666554 5555666677788888864
No 322
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=21.03 E-value=1e+02 Score=23.44 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.5
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCC
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKN 32 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~ 32 (86)
+-+|+++||..+.+-...|.++|+..|
T Consensus 31 ~git~v~GN~~~~~~~~na~~~l~~~g 57 (304)
T PRK10768 31 KLITTVAGNVSVEKTTRNALKLLHFFN 57 (304)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHHhC
Confidence 458999999999999999999999988
No 323
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=20.98 E-value=2.8e+02 Score=18.79 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=22.3
Q ss_pred EEEEcccCchhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHH
Q psy3969 6 KISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQ 54 (86)
Q Consensus 6 ~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~ 54 (86)
.||++-|+.+. . ...+..-|..+|+.+--|++.+ ..++.++++.+
T Consensus 69 ~F~a~wC~~C~--~-~~p~l~~l~~~~~~vi~V~~~~-~~~~~~~~~~~ 113 (173)
T TIGR00385 69 NVWASWCPPCR--A-EHPYLNELAKDGLPIVGVDYKD-QSQNALKFLKE 113 (173)
T ss_pred EEECCcCHHHH--H-HHHHHHHHHHcCCEEEEEECCC-ChHHHHHHHHH
Confidence 46666676622 1 1222333445677777777652 23334455443
No 324
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=20.81 E-value=1.8e+02 Score=23.47 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHHhC-CCceEEEEccCCCCHhHHHHHHHhcC
Q psy3969 21 QQRVLMILDSK-NIDYTVIDITEPGKENEKEFMQQNSK 57 (86)
Q Consensus 21 q~~a~~lL~~k-~I~f~eiDI~~~~d~~~r~~M~~~~g 57 (86)
-.++..|++.. +++|-.||++. ++.+.--+|.+...
T Consensus 109 ~er~~~L~~a~~~~d~iviD~Ah-Ghs~~~i~~ik~ir 145 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVAN-GYSEHFVEFVKLVR 145 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCC-CcHHHHHHHHHHHH
Confidence 57888899874 89999999996 56666666676663
No 325
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=20.70 E-value=2.2e+02 Score=20.55 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=29.9
Q ss_pred EEEEcccC-chhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 6 KISNTVRG-VKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 6 ~y~ss~sg-n~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
+|+===|| +..+=+++..+++..+++.|.|+++.++
T Consensus 120 vfiEVKtGk~~~Lt~rEk~ir~aVe~grV~~e~~~~~ 156 (156)
T PF10107_consen 120 VFIEVKTGKSARLTKREKAIRDAVEAGRVRWEEIRID 156 (156)
T ss_pred EEEEeccCCCcccCHHHHHHHHHHHcCceEEEEEecC
Confidence 34444477 7888899999999999999999999874
No 326
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=20.67 E-value=2.1e+02 Score=17.21 Aligned_cols=40 Identities=5% Similarity=-0.007 Sum_probs=22.5
Q ss_pred EEEEEcccCc-hhchHHHHHHHHHHHhCCCceEEEEccCCCCHh
Q psy3969 5 YKISNTVRGV-KGVKKRQQRVLMILDSKNIDYTVIDITEPGKEN 47 (86)
Q Consensus 5 ~~y~ss~sgn-~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~ 47 (86)
..||++-|+. .+++..-.++-.-++. .+.|-.||++ .+++
T Consensus 23 v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~--~~~~ 63 (101)
T cd03003 23 VNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCG--DDRM 63 (101)
T ss_pred EEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCC--ccHH
Confidence 3466666665 3344444444444443 3678888887 4544
No 327
>KOG0524|consensus
Probab=20.66 E-value=1.1e+02 Score=24.54 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=28.4
Q ss_pred hhchHHHHHHHHHHHhCCCceEEEEccCCCCHhHHHHHHH
Q psy3969 15 KGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQ 54 (86)
Q Consensus 15 ~~vK~~q~~a~~lL~~k~I~f~eiDI~~~~d~~~r~~M~~ 54 (86)
.....+|-.|-..|..+||+-++||+-- .-|-..+-...
T Consensus 245 Sr~v~~~leAA~~L~~~Gvs~EVInlrS-irP~D~~tI~~ 283 (359)
T KOG0524|consen 245 SRMVGHCLEAAETLVAKGVSAEVINLRS-IRPFDIETIGA 283 (359)
T ss_pred chhHHHHHHHHHHHHhcCCCceeEeeec-cCcccHHHHHH
Confidence 3456779999999999999999999941 45555554433
No 328
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=20.55 E-value=3.1e+02 Score=19.10 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=21.4
Q ss_pred EEEccCCCCHhHHHHHHHhcCCCCCCCCCCCCCCCCeEEeCC
Q psy3969 37 VIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78 (86)
Q Consensus 37 eiDI~~~~d~~~r~~M~~~~g~~~~~~~~~~~~tvPQIFigd 78 (86)
.+=+| +|.+.++..+++ | +|-||.-+
T Consensus 100 ~iVaT--nD~eLk~rlr~~-G-------------IPvi~lr~ 125 (136)
T COG1412 100 YIVAT--NDKELKRRLREN-G-------------IPVITLRQ 125 (136)
T ss_pred EEEEe--CCHHHHHHHHHc-C-------------CCEEEEeC
Confidence 55567 899999999998 7 89999873
No 329
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=20.28 E-value=1.1e+02 Score=17.94 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=16.9
Q ss_pred chhchHHHHHHHHHHHhCCC
Q psy3969 14 VKGVKKRQQRVLMILDSKNI 33 (86)
Q Consensus 14 n~~vK~~q~~a~~lL~~k~I 33 (86)
.++++...-+|.-||..|++
T Consensus 32 ~p~lR~~lv~aLiLLRnK~~ 51 (52)
T PF08158_consen 32 DPDLRMKLVKALILLRNKDL 51 (52)
T ss_pred CHHHHHHHHHHHHHHHccCC
Confidence 46788889999999999886
No 330
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=20.09 E-value=3.7e+02 Score=21.62 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=32.8
Q ss_pred EEEEEcccCchhchHHHHHHHHHHHhCCCceE-EEEccCCCCHhHHHHHHH
Q psy3969 5 YKISNTVRGVKGVKKRQQRVLMILDSKNIDYT-VIDITEPGKENEKEFMQQ 54 (86)
Q Consensus 5 ~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~-eiDI~~~~d~~~r~~M~~ 54 (86)
++|+.||++.+ -.....|-.+|+.+.|.-. ..-|+ |.+.+.+.++.+
T Consensus 270 ~v~IGSCtn~~--~~dl~~aA~ilkgk~v~~~v~~~v~-P~S~~v~~~a~~ 317 (389)
T cd01351 270 QVLIGSCTNNR--YSDMLAAAKLLKGAKVAPGVRLIVT-PGSRMVYATLSR 317 (389)
T ss_pred EEEEecCCCCC--HHHHHHHHHHHcCCcCCCCceEEEE-CCCHHHHHHHHH
Confidence 56999999886 5678889999999887632 34444 356666665554
No 331
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=20.04 E-value=1.5e+02 Score=22.40 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=30.9
Q ss_pred CcEEEEEcccCchhchHHHHHHHHHHHhCCCceEEEEcc
Q psy3969 3 KPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDIT 41 (86)
Q Consensus 3 ~~~~y~ss~sgn~~vK~~q~~a~~lL~~k~I~f~eiDI~ 41 (86)
.-++|.+.-.+..+++.-.+.+..+|+..|++|..++.+
T Consensus 165 e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~ 203 (297)
T cd00770 165 EQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNIC 203 (297)
T ss_pred eEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 334555555566778888899999999999999999986
Done!