RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3969
(86 letters)
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2;
SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 111
Score = 68.8 bits (168), Expect = 5e-17
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 10 TVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNP 69
+ G +KK+QQ V+ L++ I++ +DIT E ++++M +N + NP
Sbjct: 16 SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMS--EEQRQWMYKNVPPEKKPTQ--GNP 71
Query: 70 LPPQIFNEEDYCG 82
LPPQIFN + YCG
Sbjct: 72 LPPQIFNGDRYCG 84
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding,
glutaredoxin, thioredoxin fold, crystallography,
protein binding; HET: CIT; 1.90A {Homo sapiens} PDB:
1wry_A
Length = 121
Score = 68.5 bits (167), Expect = 8e-17
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 10 TVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNP 69
+ G +KK+QQ VL L++ I + DI E +++M++N + P
Sbjct: 8 SSSGSTAIKKKQQDVLGFLEANKIGFEEKDIA--ANEENRKWMREN--VPENSRPATGYP 63
Query: 70 LPPQIFNEEDYCG 82
LPPQIFNE Y G
Sbjct: 64 LPPQIFNESQYRG 76
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 59.4 bits (144), Expect = 1e-13
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 10 TVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNP 69
+V G + +K +Q V ILD K I Y ++DI++ ++ M+ +
Sbjct: 10 SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQ--DNALRDEMRTLAG--------NPKA 59
Query: 70 LPPQIFNEEDYCG 82
PPQI N YCG
Sbjct: 60 TPPQIVNGNHYCG 72
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural
genomics of infec diseases, csgid, oxidoreductase; HET:
GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Length = 89
Score = 36.1 bits (84), Expect = 1e-04
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 28 LDSKNIDYTVIDITEPGKENEK-EFMQQNSKATPSDSTVKSNPLPPQIF 75
+ NI + I + + ++ + M Q+ K STV PQIF
Sbjct: 24 FEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTV------PQIF 66
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria
phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Length = 87
Score = 34.7 bits (80), Expect = 4e-04
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 10/52 (19%)
Query: 28 LDSKNIDYTVIDITEPGKENE----KEFMQQNSKATPSDSTVKSNPLPPQIF 75
L K + I+I + E + + + T T+ PQ+F
Sbjct: 24 LTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTM------PQVF 69
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 34.9 bits (81), Expect = 4e-04
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 28 LDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
L + +D+ VI I + E K+ +++ + S +V P +
Sbjct: 32 LKREGVDFEVIWIDKLEGEERKKVIEKVHSISGS-YSV------PVVV 72
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 34.0 bits (79), Expect = 8e-04
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 28 LDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
L SK + + + I G ++E M + S T TV PQIF
Sbjct: 21 LSSKGVSFQELPID--GNAAKREEMIKRSGRT----TV------PQIF 56
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 33.3 bits (77), Expect = 0.002
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 28 LDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
L K ++ ID + + MQ+ S T PQIF
Sbjct: 26 LARKGAEFNEIDAS--ATPELRAEMQERSGRN----TF------PQIF 61
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A
{Synechocystis SP}
Length = 99
Score = 32.6 bits (75), Expect = 0.003
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 11/53 (20%)
Query: 23 RVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
R L +L K +++ I E + + + ++ PQIF
Sbjct: 31 RALALLKRKGVEFQEYCIDG-DNEAREAMAARANGKR----SL------PQIF 72
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 32.4 bits (74), Expect = 0.004
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
++ +L +D+ + + + E+E +++ + PS S P
Sbjct: 36 KKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSF-------PTTI 82
>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for
structural genomics of infectious diseases, csgid,
oxidoreductase; HET: MSE GSH; 1.20A {Salmonella
enterica subsp} PDB: 1g7o_A
Length = 218
Score = 33.0 bits (75), Expect = 0.006
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKAT 59
+ MI KNI + + ++E + +
Sbjct: 16 VKARMIFGLKNIPVELNVL---QNDDEATPTRMIGQKM 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.007
Identities = 9/83 (10%), Positives = 18/83 (21%), Gaps = 26/83 (31%)
Query: 18 KKRQQRVLMILD---SKNI---------------DYTVIDITEPGKENEKEFMQQNSKAT 59
K + L++L + V D + T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 60 PSDS--------TVKSNPLPPQI 74
P + + LP ++
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREV 322
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin,
redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Length = 81
Score = 30.7 bits (70), Expect = 0.015
Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 13/58 (22%)
Query: 28 LDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85
++++ D+ +I++ E ++ P + + FR
Sbjct: 21 MENRGFDFEMINVDR--VPEAAEALRAQGFRQ-----------LPVVIAGDLSWSGFR 65
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain
swapping, electron transport; 2.69A {Corynebacterium
ammoniagenes} SCOP: c.47.1.1
Length = 75
Score = 30.3 bits (69), Expect = 0.020
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 13/58 (22%)
Query: 28 LDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEEDYCGVFR 85
LD + Y +DI+ + ++++ P + + ++ FR
Sbjct: 21 LDRAGLAYNTVDISL--DDEARDYVMALGYVQ-----------APVVEVDGEHWSGFR 65
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Bartonella henselae}
Length = 89
Score = 29.4 bits (67), Expect = 0.046
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 23 RVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
R +LD K + YT ID + +E +Q+ + T PQIF
Sbjct: 21 RARDLLDKKGVKYTDIDAST---SLRQEMVQRANGRN----TF------PQIF 60
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 29.9 bits (67), Expect = 0.061
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55
QR+ MIL K + + V + K +E
Sbjct: 34 QRLFMILWLKGVKFNVTTVDMTRK--PEELKDLA 65
>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC,
chloride channel, ION transport, ionic channel,
nucleus, transport, gated channel; 1.95A {Homo sapiens}
PDB: 3kjy_A
Length = 250
Score = 30.0 bits (67), Expect = 0.065
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENE 48
QR+ M+L K + +T+ + +
Sbjct: 46 QRLFMVLLLKGVPFTLTTVDTRRSPDV 72
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold,
thiol-disulfide oxidoreductase, glutaredox
oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana}
PDB: 3rhc_A* 3fz9_A* 3fza_A*
Length = 113
Score = 29.1 bits (66), Expect = 0.071
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 23 RVLMILDSKNIDYTVIDITEPGKENEK--EFMQQNSKATPSDSTVKSNPLPPQIF 75
V + + V+++ + G + + + +++ + TV P +F
Sbjct: 34 EVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQH----TV------PNVF 78
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB:
2fls_A*
Length = 146
Score = 29.3 bits (66), Expect = 0.076
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 23 RVLMILDSKNIDYTV--IDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
+ N++Y V +D+ E G + + + + TV P+IF
Sbjct: 64 MAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE-----RTV------PRIF 107
>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1;
glutathione-S-tranferase superfamily, chloride ION
channel, metal transport; 1.40A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A
3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A
Length = 241
Score = 29.5 bits (66), Expect = 0.099
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENE 48
QR+ M+L K + + V + +
Sbjct: 28 QRLFMVLWLKGVTFNVTTVDTKRRTET 54
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 28.4 bits (64), Expect = 0.12
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 28 LDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
+ + Y +DI + KE +QQ KA TV PQIF
Sbjct: 26 NERDDFQYQYVDIR--AEGITKEDLQQ--KAGKPVETV------PQIF 63
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics,
structural genomics CON SGC, developmental protein,
differentiation; 2.21A {Homo sapiens}
Length = 114
Score = 28.7 bits (65), Expect = 0.13
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 11/54 (20%)
Query: 23 RVLMILDSKNIDYTVIDITEPGKENE-KEFMQQNSKATPSDSTVKSNPLPPQIF 75
RV + S ++ V+++ + +E + + + TV P IF
Sbjct: 32 RVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQK----TV------PNIF 75
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 28.5 bits (64), Expect = 0.17
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 23 RVLMILDSKNIDYTV--IDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
+ N++Y V +D+ E G + + + + TV P+IF
Sbjct: 42 MAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGE-----RTV------PRIF 85
>2ahe_A Chloride intracellular channel protein 4;
glutathione-S-transferase superfamily, CLIC4, NCC27,
chloride ION channel, metal transport; 1.80A {Homo
sapiens} PDB: 2d2z_A
Length = 267
Score = 28.8 bits (64), Expect = 0.18
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENE 48
QR+ MIL K + ++V + K +
Sbjct: 39 QRLFMILWLKGVVFSVTTVDLKRKPAD 65
>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis,
DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania
infantum}
Length = 471
Score = 28.2 bits (63), Expect = 0.33
Identities = 1/20 (5%), Positives = 8/20 (40%)
Query: 22 QRVLMILDSKNIDYTVIDIT 41
R + + + ++++
Sbjct: 265 DRARLASELRKFQMHIVEVP 284
Score = 27.4 bits (61), Expect = 0.50
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
RV ++ K + Y + +
Sbjct: 39 HRVEIVAREKQVSYDRVAV 57
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione,
transferase, PSI, MCSG, structural genomics; 2.40A
{Pseudomonas syringae PV}
Length = 310
Score = 27.9 bits (61), Expect = 0.41
Identities = 4/35 (11%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNS 56
++ ++L K +++ + I P + +
Sbjct: 16 EKARLMLGFKGVNWRSVTI--PSIMPKPDLTALTG 48
>3s40_A Diacylglycerol kinase; structural genomics, the center for
structural genomics of infectious diseases, csgid,
transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Length = 304
Score = 27.3 bits (61), Expect = 0.54
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPG 44
+K I N G + +++ L + D ++ E G
Sbjct: 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQG 51
>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3;
2.20A {Bombyx mori}
Length = 246
Score = 27.0 bits (60), Expect = 0.70
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
RVL++L++K I Y V +
Sbjct: 39 HRVLLVLEAKRIKYEVYRL 57
>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase;
HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*
Length = 241
Score = 26.6 bits (59), Expect = 1.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
+R ++L +K I + VI+I
Sbjct: 36 ERTRLVLKAKGIRHEVINI 54
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 26.6 bits (59), Expect = 1.1
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPG 44
K+ I N G + K+ L+ L+ + + + G
Sbjct: 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIG 67
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI; 1.60A {Agrobacterium tumefaciens str}
SCOP: d.116.1.1
Length = 181
Score = 26.2 bits (57), Expect = 1.2
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 15 KGVKKRQQRVLMILDSKNIDYTVID 39
+ +K + LD I +T
Sbjct: 15 ENSRKTATELFEFLDGLGISHTTKQ 39
>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione
transferase, dehydroascorbate reductase, reductase;
1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*
Length = 239
Score = 26.2 bits (58), Expect = 1.4
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
R ++L +K+I + V++I
Sbjct: 36 HRTRLVLKAKDIRHEVVNI 54
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2
PDB: 1vhd_A*
Length = 371
Score = 26.0 bits (58), Expect = 1.5
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
+ +LD I Y + D E
Sbjct: 59 DDLKKLLDETEISYEIFDEVEE 80
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 25.7 bits (57), Expect = 1.6
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 23 RVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATPSDSTVKSNPLPPQIF 75
RV +L Y V+++ E ++ +Q TV P +F
Sbjct: 35 RVKQLLTQVGASYKVVELDELSDGSQ---LQSALAHWTGRGTV------PNVF 78
>3lyk_A Stringent starvation protein A homolog; structural genomics,
GST-superfamily, SSPA, PSI-2, protein structure
initiative; 2.10A {Haemophilus influenzae}
Length = 216
Score = 25.7 bits (57), Expect = 1.7
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
+V ++L K + Y ++
Sbjct: 19 HQVKIVLAEKGVLYENAEV 37
>1vjf_A DNA-binding protein, putative; structural genomics, joint center
for S genomics, JCSG, protein structure initiative,
PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15}
SCOP: d.116.1.1
Length = 180
Score = 25.8 bits (56), Expect = 1.8
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 19 KRQQRVLMILDSKNIDYTVID 39
K + + D+ +D+ +D
Sbjct: 14 KTRADLFAFFDAHGVDHKTLD 34
>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription;
HET: CIT; 2.02A {Yersinia pestis}
Length = 213
Score = 25.7 bits (57), Expect = 1.8
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
+V ++L K + + +
Sbjct: 23 HQVRIVLAEKGVSVEIEQV 41
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM;
1.75A {Glycine max} PDB: 3fhs_A*
Length = 219
Score = 25.8 bits (57), Expect = 1.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
RV + L K I Y +
Sbjct: 17 MRVRIALAEKGIKYEYKEE 35
>1vjq_A Designed protein; structural genomics, engineered protein, PSI,
protein struct initiative, structural genomics of
pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Length = 79
Score = 25.1 bits (55), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKE 50
+ L +L +K I +TV + E G EN+
Sbjct: 51 EWFLEMLKAKGIPFTVY-VEEGGSENKYF 78
>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH;
1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5
Length = 231
Score = 25.5 bits (56), Expect = 2.2
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
QR + + K +++ +
Sbjct: 19 QRCRIAMAEKGLEFEYREE 37
>2c3n_A Glutathione S-transferase theta 1; glutathione transferase,
polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A
Length = 247
Score = 25.4 bits (56), Expect = 2.3
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEK-EFMQQN 55
+ V + +I + + + ++ F Q N
Sbjct: 22 RAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVN 56
>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant,
TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP:
a.45.1.1 c.47.1.5
Length = 230
Score = 25.4 bits (56), Expect = 2.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
RV + L K + Y ++
Sbjct: 19 TRVKLALALKGLSYEDVEE 37
>3fz4_A Putative arsenate reductase; APC61768, structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.38A
{Streptococcus mutans UA159}
Length = 120
Score = 24.9 bits (55), Expect = 2.7
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 28 LDSKNIDYTVIDITE--PGKENEKEFMQQ 54
LD DY IDI + P + +++
Sbjct: 23 LDDLAWDYDAIDIKKNPPAASLIRNWLEN 51
>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX;
2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5
PDB: 1bx9_A*
Length = 211
Score = 25.3 bits (56), Expect = 2.8
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKEN-EKEFMQQN 55
+RVL+ L KN+D+ ++ + E+ ++ F+ +N
Sbjct: 15 RRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRN 49
>4f3m_A BH0337 protein; crispr, ferredoxin fold, endoribonuclease, RNA, RNA
binding; 1.71A {Bacillus halodurans}
Length = 238
Score = 25.2 bits (55), Expect = 3.1
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 10/66 (15%)
Query: 1 MKKPYKISNTVRGVKGVKKRQQRVLMILDSKNIDYTVIDITEPGKENEKEFMQQNSKATP 60
MK S VR ++ L K++ Y V + EF
Sbjct: 63 MKPIQMESKGVRPIEYGGGNTLAHYTYL--KDVHYQV--------KAHFEFNLHRPDLAF 112
Query: 61 SDSTVK 66
+ K
Sbjct: 113 DRNEGK 118
>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1,
NPPSFA, national project protein structural and
functional analyses; HET: GSH; 1.40A {Mus musculus}
PDB: 2cz3_A 1fw1_A*
Length = 223
Score = 24.9 bits (55), Expect = 3.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 22 QRVLMILDSKNIDYTV--IDITEPGKENEK-EFMQQN 55
RV + L K IDY + I++ + G + EF N
Sbjct: 25 WRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLN 61
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira
interrogans serovar lai} PDB: 3ubl_A*
Length = 242
Score = 25.0 bits (55), Expect = 3.3
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55
+V + + K ++Y I I +E +F++ +
Sbjct: 16 NKVKLGILEKGLEYEQIRIAPSQEE---DFLKIS 46
>1axd_A Glutathione S-transferase I; transferase, herbicide
detoxification, transferase-transfera inhibitor
complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1
c.47.1.5 PDB: 1bye_A*
Length = 209
Score = 24.9 bits (55), Expect = 3.6
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEK-EFMQQN 55
R L+ DY ++ I E++ E + +N
Sbjct: 15 TRCATALEEAGSDYEIVPINFATAEHKSPEHLVRN 49
>3lyp_A Stringent starvation protein A; structural genomics,
GST-superfamily, SSPA, stringent starva protein A
homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB:
3mdk_A
Length = 215
Score = 25.0 bits (55), Expect = 3.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
RV ++L K + +I +
Sbjct: 21 HRVRIVLAEKGVSAEIISV 39
>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST,
plasmid, bacterial, biodegradation, fumaryl pyruvate;
HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*
Length = 214
Score = 25.0 bits (55), Expect = 3.7
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEK-EFMQQN 55
R+ + L+ K + Y + + +E+ K F N
Sbjct: 15 HRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALN 49
>1z9h_A Membrane-associated prostaglandin E synthase-2; membran
associated protein, indomethacin, isomerase; HET: IMN;
2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5
PDB: 2pbj_A*
Length = 290
Score = 24.8 bits (53), Expect = 3.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKE 46
+V LD + Y V+++ +
Sbjct: 27 SKVRAFLDFHALPYQVVEVNPVLRA 51
>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase,
detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles
dirus} SCOP: a.45.1.1 c.47.1.5
Length = 210
Score = 24.9 bits (55), Expect = 3.8
Identities = 2/33 (6%), Positives = 7/33 (21%)
Query: 23 RVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55
+++ I + + N
Sbjct: 14 SAILLAKKLGITLNLKKTNVHDPVERDALTKLN 46
>3lxz_A Glutathione S-transferase family protein; structural genomics,
PP0183, PSI-2, protein structure initiative; 1.76A
{Pseudomonas putida} PDB: 3pr8_A*
Length = 229
Score = 24.6 bits (54), Expect = 4.5
Identities = 3/34 (8%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEKEFMQQN 55
V + L K + + + + ++ +
Sbjct: 15 NMVKLALLEKGLTFEEVTFYGGQAP---QALEVS 45
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo
sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Length = 244
Score = 24.6 bits (54), Expect = 4.6
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKENEK-EFMQQN 55
+ V + I + + +++ EF+Q N
Sbjct: 15 RAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQIN 49
>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula
elliptica} PDB: 3qaw_A*
Length = 243
Score = 24.6 bits (54), Expect = 4.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 22 QRVLMILDSKNIDYTVIDITEPGKEN-EKEFMQQN 55
+VL++L K IDY I+ KE+ +E ++ N
Sbjct: 39 WKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELN 73
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD;
2.00A {Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 24.4 bits (54), Expect = 5.1
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
++V +L ++ I+ V D P
Sbjct: 49 KQVADLLKAQGINSAVYDGVMP 70
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 24.5 bits (54), Expect = 5.8
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
+ L L I+ + D EP
Sbjct: 53 DKTLHYLREAGIEVAIFDGVEP 74
>3gkx_A Putative ARSC family related protein; ARSC family protein,
structural genomi 2, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 120
Score = 24.1 bits (53), Expect = 5.8
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 28 LDSKNIDYTVIDITE--PGKENEKEFMQQ 54
L NI+YT I + P E K ++
Sbjct: 24 LIENNIEYTNRLIVDDNPTVEELKAWIPL 52
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure
2 function project, S2F, structu genomics, unknown
function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa}
SCOP: c.47.1.12
Length = 114
Score = 24.1 bits (53), Expect = 6.0
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 28 LDSKNIDYTVIDITE--PGKENEKEFMQQ 54
LD + Y D +E+ + + +
Sbjct: 20 LDEHKVAYDFHDYKAVGIDREHLRRWCAE 48
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 24.4 bits (53), Expect = 6.3
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 22 QRVLMILDSKNIDYTVIDITEP---GKENEKEFMQQNSKATPSDSTVKSNPLPPQIFNEE 78
+ I+D K I + +++ TEP G + ++ ++ L + +
Sbjct: 79 DALSKIVDPKEITHIIVNHTEPDHSG--SLPATLKTIGHDVEIIASNFGKRLLEGFYGIK 136
Query: 79 DYCGV 83
D V
Sbjct: 137 DVTVV 141
>4dej_A Glutathione S-transferase related protein; transferase-like
protein, transcription regulation; 2.90A {Idiomarina
loihiensis}
Length = 231
Score = 24.2 bits (53), Expect = 6.4
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 22 QRVLMILDSKNIDYTVIDI 40
+V ++L K + + +
Sbjct: 25 HQVRLVLAEKGVGVEITYV 43
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 24.1 bits (53), Expect = 6.4
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
+V +D+ + + + D P
Sbjct: 49 AKVTDKMDAAGLAWAIYDGVVP 70
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 24.3 bits (53), Expect = 6.9
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
+ + ++ K +DY ++ P
Sbjct: 69 EALQQTVNLKKLDYVILGHFSP 90
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 24.4 bits (53), Expect = 7.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
++ I D +DY V++ TE
Sbjct: 62 AKLKQIKDPVKLDYLVVNHTES 83
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 23.7 bits (52), Expect = 7.1
Identities = 4/29 (13%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 28 LDSKNIDYTVIDITE--PGKENEKEFMQQ 54
L+ I + +I + K+ ++
Sbjct: 21 LEEHEIPFVERNIFSEPLSIDEIKQILRM 49
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidore; HET: FMN; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 2ohi_A* 2ohj_A*
Length = 404
Score = 24.1 bits (52), Expect = 8.2
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
+ L + + +DY + + E
Sbjct: 65 EDALQQVGMERVDYIIQNHVEK 86
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase,
DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN;
2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 24.0 bits (52), Expect = 8.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 22 QRVLMILDSKNIDYTVIDITEP 43
+ ++D K IDY VI E
Sbjct: 61 CGIASVIDPKKIDYLVIQHLEL 82
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S
genomics, seattle structural genomics center for
infectious ssgcid; NMR {Brucella abortus}
Length = 120
Score = 23.7 bits (52), Expect = 8.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 28 LDSKNIDYTVIDITEPG 44
L+ IDYT D + G
Sbjct: 25 LEDHGIDYTFHDYKKEG 41
>3l78_A Regulatory protein SPX; transcription, transcriptional factor,
disulfide bond, redox-active center, transcription
regulati; 1.90A {Streptococcus mutans}
Length = 120
Score = 23.7 bits (52), Expect = 8.9
Identities = 2/29 (6%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 28 LDSKNIDYTVIDITE--PGKENEKEFMQQ 54
L+ ++ + +I ++ + +
Sbjct: 20 LNRHDVVFQEHNIMTSPLSRDELLKILSY 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.132 0.370
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,214,072
Number of extensions: 54795
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 76
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)