BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy397
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2
SV=1
Length = 132
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 83/94 (88%)
Query: 5 LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64
++ T TI+TRK+MTNRLL RKQMV DVLHPGKP+V KT+IREKL+KM+K P+ +F FG
Sbjct: 1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 60
Query: 65 FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
F+TNFGGGKSTGFALIYD++DLAKKFEPK+RL R
Sbjct: 61 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 94
>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1
Length = 132
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVT++TRK+MTNRLL RKQMVVDVLHPGK +V KT+IREKL+KM+K+ P+ +F FGF+T
Sbjct: 4 TVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGFA++YDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKHRLAR 93
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1
Length = 132
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 79/88 (89%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMVVDVLHPGK +V KT+IREKL+KM+K+ P+ +F FGF+T
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRL 96
FGGGK+TGFA++YDS+D AKK EPK+RL
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKHRL 91
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2
SV=1
Length = 131
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
+VT++TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ +F FGF+T
Sbjct: 4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKTQ 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGFA++YDS+D AKK EPKYRL R
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKYRLAR 93
>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps24b PE=2 SV=3
Length = 134
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/94 (64%), Positives = 77/94 (81%)
Query: 7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
+ VTI+TRK+MTNRLL RKQMVVD+LHPGK ++ K +IREKL++M+K+ E + AFG +
Sbjct: 2 SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLR 61
Query: 67 TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
T+FGGG+STGFALIYDS + KKFEP YRL RV
Sbjct: 62 THFGGGRSTGFALIYDSTESMKKFEPHYRLVRVG 95
>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps24a PE=3 SV=3
Length = 134
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 75/94 (79%)
Query: 7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
+ VTI+TRK+MTNRLL RKQMVVD+LHPGK ++ K D+REKL +M+K+ + AFG +
Sbjct: 2 SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLR 61
Query: 67 TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
T++GGG++TGFALIYD ++ KKFEP YRL RV
Sbjct: 62 THYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95
>sp|P14249|RS24_MUCCL 40S ribosomal protein S24 OS=Mucor circinelloides f. lusitanicus
GN=RPS24 PE=3 SV=1
Length = 148
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 79/100 (79%)
Query: 1 MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENI 60
M+T + + VTI+TRK++TNRLL RKQMVVDV+HPG +V K ++R K+ KM+K+ E +
Sbjct: 15 MRTKRADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVV 74
Query: 61 FAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
FGF+T+FGGGK+TGFALIYD+++ K FEPK+RL R+
Sbjct: 75 SVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIG 114
>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B
PE=2 SV=2
Length = 133
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 77/95 (81%), Gaps = 1/95 (1%)
Query: 5 LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSK-PENIFAF 63
++ VTI+TR +MTNRLL RKQ V+DVLHPG+ +V K +++EKL++M++ K P IF F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 64 GFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
F+T+FGGGKS+G+ LIYD+++ AKKFEPKYRL R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIR 95
>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3
SV=1
Length = 126
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 76/97 (78%), Gaps = 1/97 (1%)
Query: 5 LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFK-SKPENIFAF 63
+ + V ++TRK +TNRLL RKQ VV+V+HPGK +V K D++ ++K+ K + PE IF F
Sbjct: 1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60
Query: 64 GFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVS 100
GF+T+FGGGKSTGF LIYD++++AKK+EPKYRL R
Sbjct: 61 GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAG 97
>sp|Q5RAQ8|RS24_PONAB 40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1
Length = 131
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|Q56JU9|RS24_BOVIN 40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2
Length = 131
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62850|RS24_RAT 40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1
Length = 133
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62849|RS24_MOUSE 40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1
Length = 133
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62848|RS24_MESAU 40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3
SV=1
Length = 133
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P62847|RS24_HUMAN 40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1
Length = 133
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 80/90 (88%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1
Length = 132
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 79/89 (88%)
Query: 8 STVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQT 67
TVTI+TRK+MTNRLL RKQMV+DVLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T
Sbjct: 3 DTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRT 62
Query: 68 NFGGGKSTGFALIYDSIDLAKKFEPKYRL 96
+FGGGK+TGF +IYDS+D AKK EPK+RL
Sbjct: 63 HFGGGKTTGFGMIYDSLDYAKKNEPKHRL 91
>sp|Q4R5H5|RS24_MACFA 40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2
SV=1
Length = 131
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 79/90 (87%)
Query: 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
TVTI+TRK+MTNRLL RKQMV+ VLHPGK +V KT+IREKL+KM+K+ P+ IF FGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
FGGGK+TGF +IYDS+D AKK EPK+RL R
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAR 93
>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1
Length = 135
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 82/125 (65%), Gaps = 7/125 (5%)
Query: 7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
+ VTI+TRK ++N LL RKQ VVDVLHP + +V K ++REKL++++K++ + + FGF+
Sbjct: 2 SDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFR 61
Query: 67 TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDH 126
T FGGGKS GF L+Y+S+ AKKFEP YRL R + + S Q+ + K +
Sbjct: 62 TQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYG-------LAEKVEKASRQQRKQKKNR 114
Query: 127 SELVF 131
+ +F
Sbjct: 115 DKKIF 119
>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1
Length = 135
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 82/125 (65%), Gaps = 7/125 (5%)
Query: 7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66
+ VTI+TRK ++N LL RKQ VVDVLHP + +V K ++REKL++++K++ + + FGF+
Sbjct: 2 SDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFR 61
Query: 67 TNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITSCQEAEHKIDH 126
T FGGGKS GF L+Y+S+ AKKFEP YRL R + + S Q+ + K +
Sbjct: 62 TQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYG-------LAEKVEKASRQQRKQKKNR 114
Query: 127 SELVF 131
+ +F
Sbjct: 115 DKKIF 119
>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A
PE=2 SV=1
Length = 133
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 78/95 (82%), Gaps = 1/95 (1%)
Query: 5 LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSK-PENIFAF 63
++ VTI+TRK+MTNRLL RKQ V+DVLHPG+ +V K +++EKL++M++ K P IF F
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60
Query: 64 GFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
F+T+FGGGKS+GF LIYD+++ AKKFEPKYRL R
Sbjct: 61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIR 95
>sp|C6A0F5|RS24_THESM 30S ribosomal protein S24e OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=rps24e PE=3 SV=1
Length = 98
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N+LLGRK++ +V+H G+P+ + D++ KL M PE ++ FG S G+A
Sbjct: 11 NKLLGRKEIYFEVIHEGEPTPSRADVKGKLVAMLDLNPEATVVQYIRSYFGSHVSEGYAK 70
Query: 80 IYDSIDLAKKFEPKYRLQR 98
Y+S + EP+Y L+R
Sbjct: 71 AYESKERMLYIEPEYVLRR 89
>sp|B6YW35|RS24_THEON 30S ribosomal protein S24e OS=Thermococcus onnurineus (strain
NA1) GN=rps24e PE=3 SV=1
Length = 98
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
+ IK + N+LLGRK++ DV+H G+P+ + D++ KL M PE ++ F
Sbjct: 1 MEIKVTEIKENKLLGRKEIYFDVIHEGEPTPSRKDVKGKLVAMLDLDPETTVLQYIKSYF 60
Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
G S G+A Y+S + EP+Y L R
Sbjct: 61 GSRVSKGYAKAYESKERMLYIEPEYILVR 89
>sp|Q8U442|RS24_PYRFU 30S ribosomal protein S24e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps24e PE=1 SV=1
Length = 99
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
+ I+ ++ N+L+GRK++ ++ HPG+P+ + D++ KL M PE ++ F
Sbjct: 1 MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
G S G+A YDS + EP+Y L R
Sbjct: 61 GSYISKGYAKAYDSKERMLYIEPEYILIR 89
>sp|Q9UY20|RS24_PYRAB 30S ribosomal protein S24e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps24e PE=1 SV=1
Length = 99
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
+ IK + N+L+GRK++ ++ HPG+P+ + D++ KL M PE ++ F
Sbjct: 1 MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
G KS G+A Y D EP+Y L R
Sbjct: 61 GSYKSKGYAKYYYDKDRMLYIEPEYILIR 89
>sp|P58746|RS24_PYRHO 30S ribosomal protein S24e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps24e PE=3 SV=1
Length = 99
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
+ IK + N+L+GRK++ ++ HPG+P+ + D++ KL M PE ++ F
Sbjct: 1 MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYF 60
Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
G KS G+A Y + EP+Y L R
Sbjct: 61 GSYKSKGYAKYYYDKERMLYIEPEYILIR 89
>sp|C5A442|RS24_THEGJ 30S ribosomal protein S24e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rps24e PE=3 SV=1
Length = 98
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
+ IK + N+LLGRK++ D++H G+P+ + ++ KL+ M P + ++ F
Sbjct: 1 MEIKVTEIRENKLLGRKEIYFDIIHEGEPTPSREAVKGKLAAMLDLDPNTMVLQYIRSYF 60
Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
G S G+A Y++ + EP+Y L R
Sbjct: 61 GSHVSKGYAKAYETRERMLYIEPEYILLR 89
>sp|Q5JIY8|RS24_PYRKO 30S ribosomal protein S24e OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rps24e PE=3 SV=1
Length = 98
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
+ IK + N+LLGRK++ DVLH G+P+ + ++ KL M P ++ F
Sbjct: 1 MEIKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDLDPNTTVIQYIRSYF 60
Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
G S G+A Y++ + EP+Y L R
Sbjct: 61 GSNVSKGYAKAYETRERMLYIEPEYILVR 89
>sp|A4YIV8|RS24_METS5 30S ribosomal protein S24e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rps24e PE=3 SV=1
Length = 113
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N+++GRK++ + V H G P+ + DIR+ +S +K + + T +G G S
Sbjct: 23 NKVIGRKEIKIKVYHIGSPTPSRADIRKAISSFIGAKEDLVVIRKINTGYGAGISEATIH 82
Query: 80 IYDSIDLAKKFEPKYRLQR 98
+Y D+ KFEP + + R
Sbjct: 83 VYSEKDVLSKFEPAHLVNR 101
>sp|A4WKS9|RS24_PYRAR 30S ribosomal protein S24e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps24e PE=3 SV=1
Length = 121
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N+LL R++++V+V H P+ + D+RE ++K ++F +T +G GKS
Sbjct: 14 NKLLARREVLVEVSHHKAPTPTRKDLREWVAKQLGVDVSSVFIRKIKTEYGIGKSVAEVH 73
Query: 80 IYDSIDLAKKFEPKYRLQR 98
+Y +A+ EP Y L R
Sbjct: 74 VYSDSKMARIIEPLYILAR 92
>sp|Q8ZV65|RS24_PYRAE 30S ribosomal protein S24e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps24e PE=3 SV=1
Length = 121
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N+LL R++++V+ +H + + +RE ++K N+F +T FG G+S
Sbjct: 14 NKLLARRELLVEAVHQNASTPTRQSVREWVAKQLGIDISNVFVRRIKTEFGRGRSLAEVH 73
Query: 80 IYDSIDLAKKFEPKYRLQR 98
+Y+ +A+ EP Y L R
Sbjct: 74 VYNDSKIARVIEPLYILAR 92
>sp|C4KIA8|RS24_SULIK 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rps24e PE=3 SV=1
Length = 120
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
+ N ++GR+++++ V H G + + DI + +S+ F S+ + T++G G S
Sbjct: 21 VQNAVIGRREILLKVYHMGSGTPSRKDIIKAISQAFASQENLVVVRKISTSYGAGISNVK 80
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
IY S ++ +K EPKY L R
Sbjct: 81 LHIYKSREILEKIEPKYLLDR 101
>sp|Q9YCY0|RS24_AERPE 30S ribosomal protein S24e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps24e
PE=3 SV=3
Length = 118
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N L+ R+++V+ + H KP+ + +R+KL+++ + I+ +T +G G S
Sbjct: 28 NPLVKRREIVMILHHELKPTPMRIMLRQKLAEVLGVDIKRIYIRYIKTGYGAGLSKVRVH 87
Query: 80 IYDSIDLAKKFEPKYRLQR 98
+YDS + A FEPKY ++R
Sbjct: 88 VYDSPERALSFEPKYIIER 106
>sp|C3MWX0|RS24_SULIM 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
+ N ++GR+++ + V H G + + DI + + + F S+ + T++G G S
Sbjct: 21 VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQENLVVVRKISTSYGAGISNVK 80
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
IY S ++ +K EPKY L R
Sbjct: 81 LHIYKSREILEKIEPKYLLDR 101
>sp|C3N6N7|RS24_SULIA 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
M.16.27) GN=rps24e PE=3 SV=1
Length = 120
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
+ N ++GR+++ + V H G + + DI + + + F S+ + T++G G S
Sbjct: 21 VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQENLVVVRKISTSYGAGISNVK 80
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
IY S ++ +K EPKY L R
Sbjct: 81 LHIYKSREILEKIEPKYLLDR 101
>sp|C3N750|RS24_SULIY 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
+ N ++GR+++ + V H G + + DI + + + F S+ + T++G G S
Sbjct: 21 VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQENLVVVRKISTSYGAGISNIK 80
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
IY S ++ +K EPKY L R
Sbjct: 81 LHIYKSREILEKIEPKYLLDR 101
>sp|C3NGI5|RS24_SULIN 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rps24e PE=3 SV=1
Length = 120
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
+ N ++GR+++ + V H G + + DI + + + F S+ + T++G G S
Sbjct: 21 VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQENLVVVRKISTSYGAGISNIK 80
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
IY S ++ +K EPKY L R
Sbjct: 81 LHIYKSREILEKIEPKYLLDR 101
>sp|C3MQY2|RS24_SULIL 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
+ N ++GR+++ + V H G + + DI + + + F S+ + T++G G S
Sbjct: 21 VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQENLVVVRKISTSYGAGISNIK 80
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
IY S ++ +K EPKY L R
Sbjct: 81 LHIYKSREILEKIEPKYLLDR 101
>sp|Q97ZY6|RS24_SULSO 30S ribosomal protein S24e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps24e PE=3 SV=1
Length = 120
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
M N ++GR+++ + V H G + + DI + + + S+ + T++G G S
Sbjct: 21 MQNSVIGRREISLKVYHMGSGTPSRKDIIKAIIQALGSQENLVVVRKISTSYGAGISNVK 80
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
IY S ++ +K EPKY L R
Sbjct: 81 LHIYKSREILEKVEPKYLLDR 101
>sp|O26367|RS24_METTH 30S ribosomal protein S24e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps24e PE=3 SV=1
Length = 100
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 46/84 (54%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N LL RK++ + L+ G+ + K +++ KL M + + + FG ++TG+A
Sbjct: 11 NPLLNRKEIRFECLYEGESTPKVLEVKNKLVAMLDADKDLLVVDKIDQGFGEPRATGYAK 70
Query: 80 IYDSIDLAKKFEPKYRLQRVSTKS 103
IY+S + + EP++ +++ + S
Sbjct: 71 IYESAEKLTEIEPEHVIKKNTEAS 94
>sp|A5UJM1|RS24_METS3 30S ribosomal protein S24e OS=Methanobrevibacter smithii (strain PS
/ ATCC 35061 / DSM 861) GN=rps24e PE=3 SV=1
Length = 102
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N++ R+++ V + G+ + K TDI+ KL + SK E+ Q ++G K+ G+A
Sbjct: 11 NKVFNRREIKFYVEYEGEATPKITDIKSKLVALLNSKKESTVVDNVQPHYGEPKALGYAK 70
Query: 80 IYDSIDLAKKFEPKYRLQRVSTKSLL 105
+Y++++ L+ + TKS++
Sbjct: 71 VYETVE---------DLEYIETKSVI 87
>sp|Q74M50|RS24_NANEQ 30S ribosomal protein S24e OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rps24e PE=3 SV=1
Length = 94
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N+L R + ++ V HP + + + + +EK+++M + + +G S +A
Sbjct: 12 NKLFDRTEYIIQVEHPKEKTPTREEAKEKIAEMLNVDKNKLVIKKIVSKYGLPYSFIYAR 71
Query: 80 IYDSIDLAKKFEPKYRLQR 98
+YD+ID AK+ E K L+R
Sbjct: 72 VYDNIDTAKRVELKQILRR 90
>sp|Q46FS6|RS24_METBF 30S ribosomal protein S24e OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=rps24e PE=3 SV=1
Length = 101
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGK-PSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
+ I+ K N LL R+++ V + G PS + D+R KL+ M + E + +T
Sbjct: 1 MDIRILKDKNNALLNRRELDFIVKYEGSTPS--RNDVRNKLAAMLNAPLELVVVQRLKTE 58
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
+G + G+A IY++ D K E +Y L+R
Sbjct: 59 YGMQEGKGYAKIYENADRMKDVELEYVLKR 88
>sp|Q8PZ95|RS24_METMA 30S ribosomal protein S24e OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps24e PE=1 SV=1
Length = 101
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGK-PSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
+ IK K N LL R+++ V + G PS + D+R KL+ M + E + +T
Sbjct: 1 MDIKIIKDKKNPLLNRRELDFIVKYEGSTPS--RNDVRNKLAAMLNAPLELLVIQRIKTE 58
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
+G +S G+A +Y+ D K+ E +Y L+R
Sbjct: 59 YGMQESKGYAKLYEDADRMKQVEQEYVLKR 88
>sp|Q975Q9|RS24_SULTO 30S ribosomal protein S24e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 44/81 (54%)
Query: 18 MTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
+ N ++GR+++ + V H G ++ + D+ + ++ + ++ + + T +G G S
Sbjct: 23 IKNNVIGRRELYIKVFHIGSGTISRKDMIKAIASSYGAQEDLVVIKKIHTLYGAGISYVR 82
Query: 78 ALIYDSIDLAKKFEPKYRLQR 98
A IY+ ++FEP+Y + R
Sbjct: 83 ANIYNDKKTLQEFEPQYLIGR 103
>sp|P19953|RS24_HALMA 30S ribosomal protein S24e OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps24e
PE=1 SV=1
Length = 102
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 20 NRLLGRKQMVVDVLH-PGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFA 78
N +L R + +V+H PS + +R+ L+ E + T FG K+ G+A
Sbjct: 11 NPMLHRTDVRFEVVHDEATPS--RLSVRDSLAATLNKDAEEVVIHKLDTKFGMRKTVGYA 68
Query: 79 LIYDSIDLAKKFEPKYRLQR 98
+YD+ + A+ E + L+R
Sbjct: 69 KVYDNPEYARDVEQDHMLER 88
>sp|A0B8S8|RS24_METTP 30S ribosomal protein S24e OS=Methanosaeta thermophila (strain
DSM 6194 / PT) GN=rps24e PE=3 SV=1
Length = 99
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N LL R+++V+ V+H P+ + + E+L+ + SKP + + FG +S A
Sbjct: 11 NPLLKRREIVLKVIHGEGPTPTRKSVVERLAAIKDSKPGLVVVRKMNSLFGRRESIAHAR 70
Query: 80 IYDSIDLAKKFEPKYRLQR 98
IY+S + ++ E + ++R
Sbjct: 71 IYESEERMRQVENPHIVKR 89
>sp|Q8TVD8|RS24_METKA 30S ribosomal protein S24e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rps24e PE=3
SV=1
Length = 116
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N LL RK++ V H + +K+++ KL+ + E + ++ FG ++ G+A
Sbjct: 11 NPLLYRKEVKFVVRHEDSGTPQKSEVLRKLAAILDVDKEVVLIDRMESEFGKRETKGYAK 70
Query: 80 IYDSIDLAKKFEPKYRLQR 98
IY S++ + EP++ ++R
Sbjct: 71 IYKSMEHLEDIEPEHMVER 89
>sp|O29151|RS24_ARCFU 30S ribosomal protein S24e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps24e PE=3 SV=1
Length = 110
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 20 NRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFAL 79
N LL R+++ + GK +K ++R K++ + ++PE + +T FG ++ +
Sbjct: 14 NPLLRRREVYCRLSFEGKTPSRK-EVRGKIAGLMNAEPERVVVDYIKTEFGKTEAKCYVK 72
Query: 80 IYDSIDLAKKFEPKYRLQR 98
IYD+++ +K E ++ ++R
Sbjct: 73 IYDTVEDLQKIEEEHIIER 91
>sp|Q18KI1|RS24_HALWD 30S ribosomal protein S24e OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps24e PE=3 SV=1
Length = 105
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 20 NRLLGRKQMVVDVLHP-GKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFA 78
N +L R + ++ H PS + +R+ L+ + + T FG K+ G+A
Sbjct: 11 NSMLHRTDIQFEIAHEDATPS--RLSVRDSLAAKINKDSDEVVVHKLDTKFGMRKTIGYA 68
Query: 79 LIYDSIDLAKKFEPKYRLQR 98
+YDS A++ E Y L+R
Sbjct: 69 KVYDSPQSARQVEQDYMLKR 88
>sp|Q8TJT2|RS24_METAC 30S ribosomal protein S24e OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rps24e PE=3
SV=1
Length = 101
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGK-PSVKKTDIREKLSKMFKSKPENIFAFGFQTN 68
+ IK K N LL R+++ V + G PS ++D+R KL+ M + E + +T
Sbjct: 1 MDIKILKDKNNSLLNRRELDFVVKYEGSTPS--RSDVRNKLAAMLNAPLELLIIQRIKTE 58
Query: 69 FGGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
+G +S G+A +Y K+ E +Y L+R
Sbjct: 59 YGMQESKGYAKVYADEARMKQVEQEYILKR 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,923,104
Number of Sequences: 539616
Number of extensions: 2623412
Number of successful extensions: 6046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 5980
Number of HSP's gapped (non-prelim): 73
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)