Query psy397
Match_columns 202
No_of_seqs 114 out of 308
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 21:59:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Y RP50, 40S ribosomal pro 100.0 1.7E-44 5.8E-49 290.4 8.1 98 7-104 2-99 (135)
2 2xzm_P RPS24E; ribosome, trans 100.0 7.3E-43 2.5E-47 285.0 9.2 97 8-104 1-97 (149)
3 2v94_A RPS24, 30S ribosomal pr 100.0 1.1E-42 3.8E-47 269.9 9.6 96 9-104 8-103 (107)
4 2g1d_A 30S ribosomal protein S 100.0 2.4E-42 8.2E-47 264.3 9.7 94 11-104 2-95 (98)
5 3iz6_U 40S ribosomal protein S 100.0 9.6E-44 3.3E-48 287.0 -1.3 99 6-104 6-105 (138)
6 1xn9_A 30S ribosomal protein S 100.0 2.4E-41 8.1E-46 260.0 10.9 93 11-104 2-94 (101)
7 1ywx_A 30S ribosomal protein S 100.0 1.2E-40 4E-45 256.9 10.3 93 11-104 2-94 (102)
8 2cpf_A RNA binding motif prote 60.3 27 0.00092 23.4 6.0 50 38-89 15-65 (98)
9 2dhg_A TRNA selenocysteine ass 57.5 41 0.0014 22.7 7.2 47 38-89 19-66 (104)
10 3dxb_A Thioredoxin N-terminall 56.9 14 0.00049 28.7 4.7 30 60-89 160-190 (222)
11 3ue2_A Poly(U)-binding-splicin 56.9 20 0.00067 26.5 5.2 47 42-89 39-86 (118)
12 2lxi_A RNA-binding protein 10; 56.6 11 0.00038 25.8 3.5 48 38-89 11-59 (91)
13 2dgw_A Probable RNA-binding pr 55.6 39 0.0013 22.3 6.1 45 38-89 20-65 (91)
14 1u6f_A Tcubp1, RNA-binding pro 53.6 58 0.002 23.2 7.3 47 38-89 52-99 (139)
15 3p5t_L Cleavage and polyadenyl 52.6 44 0.0015 22.2 6.0 48 38-89 11-60 (90)
16 2cqp_A RNA-binding protein 12; 51.2 38 0.0013 22.6 5.6 47 38-89 25-72 (98)
17 2kjr_A CG11242; UBL, ubiquitin 50.9 54 0.0018 23.5 6.6 47 5-59 11-57 (95)
18 3nmr_A Cugbp ELAV-like family 48.8 35 0.0012 24.4 5.3 48 38-89 13-62 (175)
19 3s7r_A Heterogeneous nuclear r 48.3 54 0.0018 21.3 6.0 47 38-89 21-68 (87)
20 2ek1_A RNA-binding protein 12; 47.2 44 0.0015 22.1 5.3 47 38-89 25-72 (95)
21 2cqc_A Arginine/serine-rich sp 47.0 58 0.002 21.4 6.7 47 38-89 25-72 (95)
22 2pq0_A Hypothetical conserved 46.2 22 0.00075 27.5 4.1 33 29-64 174-206 (258)
23 2dh8_A DAZ-associated protein 45.6 57 0.002 22.1 5.8 47 38-89 26-73 (105)
24 3bs9_A Nucleolysin TIA-1 isofo 45.5 59 0.002 21.0 7.0 47 38-89 16-63 (87)
25 2io0_B Small ubiquitin-related 45.5 57 0.0019 23.3 6.0 45 5-59 1-45 (91)
26 3fzq_A Putative hydrolase; YP_ 44.4 30 0.001 26.6 4.6 25 40-64 199-223 (274)
27 2dgv_A HnRNP M, heterogeneous 44.2 54 0.0019 21.5 5.4 45 38-89 18-63 (92)
28 2x1f_A MRNA 3'-END-processing 44.0 36 0.0012 22.8 4.5 47 38-89 12-59 (96)
29 2dha_A FLJ20171 protein; RRM d 43.5 40 0.0014 24.9 5.1 55 29-89 25-83 (123)
30 2cpz_A CUG triplet repeat RNA- 43.4 56 0.0019 22.6 5.6 47 38-89 35-82 (115)
31 2cqg_A TDP-43, TAR DNA-binding 43.3 73 0.0025 21.4 6.6 47 38-89 25-72 (103)
32 2d9p_A Polyadenylate-binding p 43.2 26 0.0009 23.7 3.7 45 38-89 25-70 (103)
33 2mss_A Protein (musashi1); RNA 42.5 19 0.00065 22.9 2.8 48 38-90 9-57 (75)
34 1jmt_A Splicing factor U2AF 35 42.1 29 0.00099 24.6 3.9 18 72-89 65-83 (104)
35 1p1t_A Cleavage stimulation fa 41.4 58 0.002 21.8 5.3 47 38-89 18-65 (104)
36 3s8s_A Histone-lysine N-methyl 41.0 86 0.0029 22.2 6.4 47 38-89 16-63 (110)
37 1p27_B RNA-binding protein 8A; 39.8 84 0.0029 21.1 8.4 47 38-89 33-80 (106)
38 2cpx_A Hypothetical protein FL 38.7 23 0.0008 24.4 2.9 47 38-89 35-82 (115)
39 3ucg_A Polyadenylate-binding p 38.6 71 0.0024 20.7 5.2 47 38-89 16-63 (89)
40 3r4c_A Hydrolase, haloacid deh 37.3 36 0.0012 26.3 4.0 32 30-64 186-217 (268)
41 3dnp_A Stress response protein 37.0 36 0.0012 26.7 4.0 31 31-64 195-225 (290)
42 2jrs_A RNA-binding protein 39; 36.5 1.1E+02 0.0036 21.3 6.5 48 38-90 36-84 (108)
43 2div_A TRNA selenocysteine ass 36.0 95 0.0032 20.6 5.9 47 38-89 19-67 (99)
44 4fxv_A ELAV-like protein 1; RN 35.9 1.1E+02 0.0036 21.1 8.4 67 15-89 9-76 (99)
45 1oo0_B CG8781-PA, drosophila Y 35.5 1E+02 0.0035 20.9 6.1 54 30-89 29-83 (110)
46 2kj6_A Tubulin folding cofacto 35.4 1.1E+02 0.0037 22.1 6.2 46 7-60 12-57 (97)
47 2dng_A Eukaryotic translation 35.1 1E+02 0.0035 20.7 7.2 53 31-90 19-72 (103)
48 3ftb_A Histidinol-phosphate am 34.9 34 0.0011 27.3 3.6 26 38-63 59-84 (361)
49 1fj7_A Nucleolin RBD1, protein 34.8 17 0.00058 24.6 1.6 54 29-89 19-73 (101)
50 3p1t_A Putative histidinol-pho 34.3 22 0.00076 28.0 2.5 27 38-64 49-75 (337)
51 1fxl_A Paraneoplastic encephal 33.9 1.2E+02 0.0041 21.2 6.7 47 38-89 12-59 (167)
52 4dw8_A Haloacid dehalogenase-l 33.9 50 0.0017 25.6 4.4 32 30-64 189-220 (279)
53 3md3_A Nuclear and cytoplasmic 33.8 1.2E+02 0.0041 21.2 6.1 47 38-89 97-144 (166)
54 2xs2_A Deleted in azoospermia- 33.5 79 0.0027 21.2 4.9 45 38-88 19-64 (102)
55 3pgw_A U1-A; protein-RNA compl 33.3 86 0.003 24.7 5.8 46 38-89 19-67 (282)
56 3ulh_A THO complex subunit 4; 33.3 1.1E+02 0.0036 20.7 5.6 46 38-89 39-85 (107)
57 3fkd_A L-threonine-O-3-phospha 33.0 26 0.00089 28.1 2.7 26 39-64 49-74 (350)
58 3md1_A Nuclear and cytoplasmic 32.7 96 0.0033 19.7 6.1 47 38-89 11-58 (83)
59 1nf2_A Phosphatase; structural 32.6 53 0.0018 25.9 4.4 32 30-64 182-213 (268)
60 2dnl_A Cytoplasmic polyadenyla 32.5 17 0.00057 25.7 1.3 50 38-90 18-68 (114)
61 3mpo_A Predicted hydrolase of 32.5 49 0.0017 25.7 4.2 25 40-64 196-220 (279)
62 2fc8_A NCL protein; structure 32.4 44 0.0015 22.4 3.5 44 38-89 25-69 (102)
63 1nrw_A Hypothetical protein, h 32.2 45 0.0016 26.5 4.0 33 29-64 207-239 (288)
64 2ku7_A MLL1 PHD3-CYP33 RRM chi 32.1 1.3E+02 0.0044 21.1 6.0 47 38-89 73-120 (140)
65 1s79_A Lupus LA protein; RRM, 31.7 75 0.0026 22.3 4.7 46 38-89 21-67 (103)
66 3n9u_C Cleavage and polyadenyl 31.6 1.7E+02 0.0057 22.1 7.4 54 31-89 59-114 (156)
67 2la6_A RNA-binding protein FUS 31.5 96 0.0033 20.7 5.1 51 38-89 23-78 (99)
68 3dao_A Putative phosphatse; st 31.4 49 0.0017 26.3 4.0 25 40-64 210-234 (283)
69 2zws_A Neutral ceramidase; pri 31.3 27 0.00091 33.4 2.9 48 25-72 54-103 (646)
70 1uaw_A Mouse-musashi-1; RNP-ty 30.7 34 0.0012 21.6 2.5 46 38-88 10-56 (77)
71 3pgv_A Haloacid dehalogenase-l 30.4 51 0.0017 26.1 4.0 32 30-64 201-232 (285)
72 2hgl_A HNRPF protein, heteroge 30.2 95 0.0032 23.3 5.3 54 29-89 46-103 (136)
73 1wxv_A BAG-family molecular ch 29.8 59 0.002 22.2 3.8 24 39-62 31-54 (92)
74 1rlm_A Phosphatase; HAD family 29.7 56 0.0019 25.7 4.1 25 40-64 190-214 (271)
75 2do4_A Squamous cell carcinoma 29.6 1.3E+02 0.0043 20.1 6.3 47 38-90 27-74 (100)
76 1whw_A Hypothetical protein ri 29.4 76 0.0026 21.1 4.3 47 38-89 18-65 (99)
77 1wel_A RNA-binding protein 12; 29.2 53 0.0018 23.2 3.6 57 29-91 27-85 (124)
78 3hdo_A Histidinol-phosphate am 29.1 33 0.0011 27.7 2.7 27 38-64 63-89 (360)
79 2ki2_A SS-DNA binding protein 28.9 33 0.0011 22.5 2.3 49 38-91 11-60 (90)
80 3ez1_A Aminotransferase MOCR f 28.6 35 0.0012 28.2 2.8 27 38-64 68-94 (423)
81 2rbk_A Putative uncharacterize 28.4 49 0.0017 25.7 3.5 31 31-64 180-210 (261)
82 1fg7_A Histidinol phosphate am 28.3 33 0.0011 28.0 2.6 25 39-63 57-81 (356)
83 2dgs_A DAZ-associated protein 28.1 58 0.002 21.8 3.5 48 38-90 20-68 (99)
84 1nu4_A U1A RNA binding domain; 28.1 44 0.0015 22.2 2.8 48 38-89 18-66 (97)
85 4f25_A Polyadenylate-binding p 27.8 1.5E+02 0.0051 20.7 5.7 45 38-89 15-60 (115)
86 3mtn_B UBA80, ubcep1, ubiquiti 27.7 1.2E+02 0.0042 19.6 5.0 31 26-60 14-44 (85)
87 2cq0_A Eukaryotic translation 27.4 1.4E+02 0.0048 19.9 6.1 47 38-89 25-72 (103)
88 1x4e_A RNA binding motif, sing 27.3 83 0.0028 20.3 4.0 47 38-89 15-62 (85)
89 2dzi_A Ubiquitin-like protein 27.1 1.3E+02 0.0044 19.4 5.7 43 8-60 6-48 (81)
90 1iqt_A AUF1, heterogeneous nuc 27.1 33 0.0011 21.7 2.0 47 38-89 9-56 (75)
91 1x5u_A Splicing factor 3B subu 27.0 1.4E+02 0.0048 20.0 5.3 47 38-89 25-72 (105)
92 4a8x_A RNA-binding protein wit 26.8 1.3E+02 0.0044 19.3 6.4 48 38-89 14-62 (88)
93 2qlc_A DNA repair protein RADC 26.8 50 0.0017 25.3 3.2 37 27-63 70-113 (126)
94 1thx_A Thioredoxin, thioredoxi 26.8 1.3E+02 0.0046 19.5 6.0 53 1-54 1-55 (115)
95 2dnz_A Probable RNA-binding pr 26.6 1.4E+02 0.0047 19.5 5.9 47 38-89 15-62 (95)
96 2lkz_A RNA-binding protein 5; 26.5 23 0.00079 24.9 1.2 45 38-87 19-66 (95)
97 1iv3_A 2-C-methyl-D-erythritol 26.3 34 0.0011 27.8 2.3 28 37-64 104-131 (152)
98 3euc_A Histidinol-phosphate am 25.9 71 0.0024 25.6 4.1 27 38-64 65-92 (367)
99 2pe8_A Splicing factor 45; RRM 25.9 39 0.0014 24.1 2.4 45 41-89 26-71 (105)
100 2cqb_A Peptidyl-prolyl CIS-tra 25.9 50 0.0017 22.2 2.8 47 38-89 22-69 (102)
101 2fy1_A RNA-binding motif prote 25.7 73 0.0025 22.5 3.8 46 38-89 17-63 (116)
102 2daf_A FLJ35834 protein; hypot 25.5 1.4E+02 0.0048 23.1 5.6 24 38-61 35-58 (118)
103 3l7y_A Putative uncharacterize 25.4 69 0.0024 25.6 4.0 25 40-64 227-251 (304)
104 1s2o_A SPP, sucrose-phosphatas 25.4 71 0.0024 25.0 4.0 33 29-64 153-185 (244)
105 1fjc_A Nucleolin RBD2, protein 25.4 68 0.0023 21.2 3.4 43 38-90 26-69 (96)
106 3get_A Histidinol-phosphate am 25.2 43 0.0015 26.9 2.7 25 40-64 65-89 (365)
107 1rkq_A Hypothetical protein YI 25.2 79 0.0027 25.2 4.3 32 30-64 190-221 (282)
108 1x5s_A Cold-inducible RNA-bind 25.1 68 0.0023 21.5 3.4 47 38-89 22-69 (102)
109 2cph_A RNA binding motif prote 25.0 96 0.0033 20.8 4.1 47 38-89 25-73 (107)
110 2cqd_A RNA-binding region cont 24.9 1.7E+02 0.0058 20.0 5.8 47 38-89 27-74 (116)
111 2cqh_A IGF-II mRNA-binding pro 24.7 1E+02 0.0036 20.2 4.2 41 38-89 18-59 (93)
112 2kxn_B Transformer-2 protein h 24.5 1.1E+02 0.0036 22.2 4.6 47 38-89 56-103 (129)
113 1wi8_A EIF-4B, eukaryotic tran 24.4 1.4E+02 0.0048 20.0 5.0 55 29-90 17-73 (104)
114 3bs3_A Putative DNA-binding pr 24.4 31 0.001 21.8 1.4 25 36-61 46-70 (76)
115 2kn4_A Immunoglobulin G-bindin 24.4 1.8E+02 0.0062 20.9 5.8 54 30-89 73-127 (158)
116 1wg1_A KIAA1579 protein, homol 24.3 49 0.0017 21.9 2.5 40 38-89 15-55 (88)
117 2g4b_A Splicing factor U2AF 65 24.2 1.8E+02 0.0062 20.6 5.7 46 38-88 104-150 (172)
118 1t0a_A 2C-methyl-D-erythritol 24.2 38 0.0013 27.7 2.2 30 37-66 106-135 (159)
119 2a3j_A U1 small nuclear ribonu 24.1 79 0.0027 23.4 3.8 44 38-88 39-86 (127)
120 2pmp_A 2-C-methyl-D-erythritol 23.8 40 0.0014 27.6 2.3 31 33-64 104-134 (160)
121 1gx1_A 2-C-methyl-D-erythritol 23.7 40 0.0014 27.6 2.2 30 37-66 105-134 (160)
122 1l3k_A Heterogeneous nuclear r 23.6 2.1E+02 0.0073 20.7 7.9 47 38-89 114-161 (196)
123 1x5o_A RNA binding motif, sing 23.5 1.8E+02 0.0061 19.8 6.0 46 38-89 35-81 (114)
124 1l6r_A Hypothetical protein TA 23.2 95 0.0033 24.2 4.3 32 30-64 145-176 (227)
125 3ffh_A Histidinol-phosphate am 23.1 41 0.0014 27.0 2.2 26 39-64 66-91 (363)
126 2dgo_A Cytotoxic granule-assoc 22.7 1.9E+02 0.0064 19.7 8.6 47 38-89 25-72 (115)
127 3sde_A Paraspeckle component 1 22.6 2.1E+02 0.0071 22.7 6.3 46 38-89 106-152 (261)
128 3ex7_B RNA-binding protein 8A; 22.5 1.9E+02 0.0064 20.1 5.4 47 38-89 32-79 (126)
129 3q2s_C Cleavage and polyadenyl 22.5 2E+02 0.007 22.9 6.3 55 30-89 71-127 (229)
130 2rs2_A Musashi-1, RNA-binding 22.4 66 0.0022 22.4 2.9 47 38-89 35-82 (109)
131 1y7y_A C.AHDI; helix-turn-heli 22.3 31 0.001 21.6 1.1 24 36-60 49-72 (74)
132 1v6e_A Cytoskeleton-associated 22.2 1.1E+02 0.0039 21.2 4.2 22 38-59 27-48 (95)
133 2kt5_A RNA and export factor-b 21.9 2E+02 0.007 19.9 5.5 53 30-89 38-91 (124)
134 4ewp_A 3-oxoacyl-[acyl-carrier 21.9 52 0.0018 27.4 2.7 45 23-73 264-308 (350)
135 3r8s_T 50S ribosomal protein L 21.8 1.9E+02 0.0064 21.3 5.4 36 21-60 22-58 (93)
136 2krb_A Eukaryotic translation 21.8 40 0.0014 21.9 1.6 42 41-89 20-62 (81)
137 2jwn_A Embryonic polyadenylate 21.7 2E+02 0.007 19.8 6.0 48 38-90 46-94 (124)
138 2ewt_A BLDD, putative DNA-bind 21.7 37 0.0013 21.2 1.4 23 36-59 46-68 (71)
139 2dgp_A Bruno-like 4, RNA bindi 21.6 1.8E+02 0.006 19.5 5.0 47 38-89 23-70 (106)
140 2b30_A Pvivax hypothetical pro 21.6 91 0.0031 25.4 4.0 32 30-64 216-247 (301)
141 2hj8_A Interferon-induced 17 k 21.6 1.9E+02 0.0066 19.5 6.7 33 26-62 15-47 (88)
142 1x4h_A RNA-binding protein 28; 21.3 1.4E+02 0.0048 20.1 4.4 47 38-89 25-72 (111)
143 3tve_T 50S ribosomal protein L 21.1 1.2E+02 0.004 22.4 4.2 36 19-58 15-50 (92)
144 2dnm_A SRP46 splicing factor; 21.1 1.1E+02 0.0038 20.5 3.8 47 38-89 23-70 (103)
145 1wh3_A 59 kDa 2'-5'-oligoadeny 20.7 1.9E+02 0.0064 19.0 4.9 33 26-62 18-50 (87)
146 1x4b_A Heterogeneous nuclear r 20.6 1.4E+02 0.0049 20.4 4.4 47 38-89 37-84 (116)
147 4hvk_A Probable cysteine desul 20.5 71 0.0024 25.2 3.1 24 41-64 44-67 (382)
148 1zod_A DGD, 2,2-dialkylglycine 20.3 69 0.0024 26.6 3.1 30 35-64 80-109 (433)
149 3f0d_A 2-C-methyl-D-erythritol 20.3 51 0.0017 27.6 2.3 31 37-67 127-157 (183)
150 3omt_A Uncharacterized protein 20.3 41 0.0014 21.4 1.4 25 36-61 44-68 (73)
151 2xi8_A Putative transcription 20.3 34 0.0012 20.8 0.9 25 36-61 37-61 (66)
152 3m1y_A Phosphoserine phosphata 20.1 86 0.003 22.7 3.3 68 40-108 141-209 (217)
153 2cq3_A RNA-binding protein 9; 20.1 2E+02 0.0069 19.1 5.4 45 38-89 25-70 (103)
154 1q1v_A DEK protein; winged-hel 20.0 57 0.0019 22.9 2.1 19 38-56 31-50 (70)
No 1
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=100.00 E-value=1.7e-44 Score=290.44 Aligned_cols=98 Identities=52% Similarity=0.905 Sum_probs=96.3
Q ss_pred CCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHH
Q psy397 7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDL 86 (202)
Q Consensus 7 ~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~ 86 (202)
+|+||||||||++||||+||||+|+|+|||+|||||+||+++||+|||+++|+||||+|+|+||+|+|+|||+||||+|+
T Consensus 2 ~~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~IYds~d~ 81 (135)
T 3u5c_Y 2 SDAVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVYNSVAE 81 (135)
T ss_dssp CCCCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEEESSHHH
T ss_pred CCcEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEEeCCHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcceeeeeCCccce
Q psy397 87 AKKFEPKYRLQRVSTKSL 104 (202)
Q Consensus 87 aKK~EPKyrL~Rngl~ek 104 (202)
|+++||+|+|+|||+.|+
T Consensus 82 akk~EPkyrL~R~gl~ek 99 (135)
T 3u5c_Y 82 AKKFEPTYRLVRYGLAEK 99 (135)
T ss_dssp HHHHSCHHHHHHHTSSCC
T ss_pred HHhcCchheEeecccccc
Confidence 999999999999999886
No 2
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=100.00 E-value=7.3e-43 Score=284.98 Aligned_cols=97 Identities=46% Similarity=0.842 Sum_probs=94.8
Q ss_pred CeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q psy397 8 STVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLA 87 (202)
Q Consensus 8 ~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~a 87 (202)
++||||||||++||||+|+||+|+|+|||+|||||+||+++||+|||+++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus 1 ~~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a 80 (149)
T 2xzm_P 1 MTIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALVYDNQQYL 80 (149)
T ss_dssp -CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred CcEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcceeeeeCCccce
Q psy397 88 KKFEPKYRLQRVSTKSL 104 (202)
Q Consensus 88 KK~EPKyrL~Rngl~ek 104 (202)
++|||+|||+|||+.++
T Consensus 81 Kk~EPkyrL~Rngl~ek 97 (149)
T 2xzm_P 81 LKYEPNYRLRKVKILGE 97 (149)
T ss_dssp HHHSCHHHHHHTTSSCC
T ss_pred HhhCchheeeecccccc
Confidence 99999999999999876
No 3
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=100.00 E-value=1.1e-42 Score=269.91 Aligned_cols=96 Identities=31% Similarity=0.516 Sum_probs=91.7
Q ss_pred eEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q psy397 9 TVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAK 88 (202)
Q Consensus 9 ~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aK 88 (202)
...|+|+++++||||+|||++|+|.|||+|||||+||+++||+|||+++++|||++|+|+||+|+|+|||+||||+|+||
T Consensus 8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~ak 87 (107)
T 2v94_A 8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKYYYDKDRML 87 (107)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEEESSHHHHH
T ss_pred eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcceeeeeCCccce
Q psy397 89 KFEPKYRLQRVSTKSL 104 (202)
Q Consensus 89 K~EPKyrL~Rngl~ek 104 (202)
++||+|||+|||+.++
T Consensus 88 k~Epky~L~R~g~~e~ 103 (107)
T 2v94_A 88 YIEPEYILIRDGIIEK 103 (107)
T ss_dssp HHSCHHHHHHTTC---
T ss_pred hhCchheeeecCcccc
Confidence 9999999999999765
No 4
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=100.00 E-value=2.4e-42 Score=264.34 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=92.1
Q ss_pred EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397 11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF 90 (202)
Q Consensus 11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~ 90 (202)
.|++.++++||||+|||++|+|.|||+|||||+||+++||+|||+++++|||++|+|+||+|+|+|||+||||+|+||++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk~ 81 (98)
T 2g1d_A 2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKIYADKPSAMLY 81 (98)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeCCccce
Q psy397 91 EPKYRLQRVSTKSL 104 (202)
Q Consensus 91 EPKyrL~Rngl~ek 104 (202)
||+|||+|||+.++
T Consensus 82 Epky~l~R~~~~~~ 95 (98)
T 2g1d_A 82 EPDYELIRNGLKQK 95 (98)
T ss_dssp CTTSCSCSSCCCSS
T ss_pred CcceeeeecCcccc
Confidence 99999999999775
No 5
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.6e-44 Score=287.02 Aligned_cols=99 Identities=58% Similarity=0.999 Sum_probs=94.2
Q ss_pred cCCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCC-CCCeEEEeceeecCCCCEEEEEEEEeCCH
Q psy397 6 SASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKS-KPENIFAFGFQTNFGGGKSTGFALIYDSI 84 (202)
Q Consensus 6 ~~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnv-d~dlVVVfg~kT~FGgGkStGfA~IYDS~ 84 (202)
+.++||||||||++||||+||||+|+|+|||+|||||+||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+
T Consensus 6 ~~~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~ 85 (138)
T 3iz6_U 6 TAPAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNL 85 (138)
T ss_dssp CCSSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCH
T ss_pred ccccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCH
Confidence 35689999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhcCcceeeeeCCccce
Q psy397 85 DLAKKFEPKYRLQRVSTKSL 104 (202)
Q Consensus 85 E~aKK~EPKyrL~Rngl~ek 104 (202)
|+|+++||+|||+|||+.|+
T Consensus 86 d~aKk~EPkyrL~R~gl~ek 105 (138)
T 3iz6_U 86 DAAKKYEPKYRLIRNGLATK 105 (138)
T ss_dssp HHHHSSCCCBTTTTTCC---
T ss_pred HHHHhcCchheEeecccccc
Confidence 99999999999999999886
No 6
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=100.00 E-value=2.4e-41 Score=260.01 Aligned_cols=93 Identities=28% Similarity=0.401 Sum_probs=91.1
Q ss_pred EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397 11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF 90 (202)
Q Consensus 11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~ 90 (202)
.|++.++++||||+|||++|+|.| |+|||||+|||++||+|||+++++|||++|+|+||+|+|+|||+||||.|+||++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk~ 80 (101)
T 1xn9_A 2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQV 80 (101)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHHHhh
Confidence 589999999999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeCCccce
Q psy397 91 EPKYRLQRVSTKSL 104 (202)
Q Consensus 91 EPKyrL~Rngl~ek 104 (202)
||+|||+|||+.++
T Consensus 81 Epky~L~R~g~~e~ 94 (101)
T 1xn9_A 81 EQEYVLKRNAVPGS 94 (101)
T ss_dssp HTGGGCCCCSCCCC
T ss_pred CchheeeecCcccc
Confidence 99999999999876
No 7
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=100.00 E-value=1.2e-40 Score=256.93 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=90.3
Q ss_pred EEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhc
Q psy397 11 TIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKF 90 (202)
Q Consensus 11 TIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~IYDS~E~aKK~ 90 (202)
.|.+-++++||||+|||++|+|.| |+|||||+|||++||+|||+++++|||++|+|+||+|+|+|||+||||.|+||++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk~ 80 (102)
T 1ywx_A 2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMATI 80 (102)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHHS
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEEECCHHHHHhh
Confidence 478899999999999999999999 6799999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeeCCccce
Q psy397 91 EPKYRLQRVSTKSL 104 (202)
Q Consensus 91 EPKyrL~Rngl~ek 104 (202)
||+|||+|||+.++
T Consensus 81 Epky~L~R~gl~e~ 94 (102)
T 1ywx_A 81 ETKSVLEKNKIEEE 94 (102)
T ss_dssp SCHHHHHHSCSCCC
T ss_pred CchhheeecCccch
Confidence 99999999999876
No 8
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.30 E-value=27 Score=23.37 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. ...+.+..-+..-|.+++.|||.| |.+.+.+++
T Consensus 15 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~ 65 (98)
T 2cpf_A 15 FSTTEETLKGVFSK-VGA-IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQK 65 (98)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHH
Confidence 45788999888854 553 122222222223366799999988 788777665
No 9
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.50 E-value=41 Score=22.69 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++.+|.=.+.-++ ..- .|++.|||.| |++.+.+++
T Consensus 19 ~~~t~~~l~~~F~~~~G~v~~v~i~----~~~-~g~~~g~afV~f~~~~~a~~ 66 (104)
T 2dhg_A 19 PDVDDGMLYEFFVKVYPSCRGGKVV----LDQ-TGVSKGYGFVKFTDELEQKR 66 (104)
T ss_dssp TTCCHHHHHHHHHHHCTTEEEEEEE----ECT-TCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEE----ECC-CCCccceEEEEECCHHHHHH
Confidence 4678999999988767742222222 222 5668888876 777776654
No 10
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=56.95 E-value=14 Score=28.70 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=20.1
Q ss_pred EEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 60 IFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 60 VVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+..+..+.-..+++.||+.| |.+.+.+++
T Consensus 160 ~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~ 190 (222)
T 3dxb_A 160 IIYQEKQGEEEDAEIIVKIFVEFSIASETHK 190 (222)
T ss_dssp EEEEEECCSSTTCCEEEEEEEEESSHHHHHH
T ss_pred EEecCCCCcccCcCceeEEEEEECCHHHHHH
Confidence 333444455556688899998 888877654
No 11
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=56.88 E-value=20 Score=26.53 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 42 KTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 42 RkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+||++..+ .||.=.+..++..-.+.-|.+++.|||.| |.+.+.|++
T Consensus 39 eedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 39 EGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp HHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred HHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence 456666554 56643344444443333456788888887 677776543
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=56.61 E-value=11 Score=25.79 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.+||++.++ .+|.....|-| -..-..|++.|||.| |.+.+.|++
T Consensus 11 ~~~te~~l~~~F~-~~G~~v~~v~i---~~d~~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 11 QAATEDDIRGQLQ-SHGVQAREVRL---MRNKSSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp SSCCHHHHHHHHH-HHTCCCSBCCS---SSCSSSCCCSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCCEeEEEEE---EecCCCCCcCceEEEEecCHHHHHH
Confidence 5678899999885 46754333322 122345667788876 778777665
No 13
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.56 E-value=39 Score=22.34 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.+||++-+... ++. +.-++.+ ..|++.|||.| |++.+.+++
T Consensus 20 ~~~t~~~l~~~F~~~-~i~-~v~i~~~-----~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 20 FNVTEKNVMEFLAPL-KPV-AIRIVRN-----AHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp SSCCHHHHHHHHTTS-CCS-EEEEEEC-----TTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Cce-EEEEEEC-----CCCCCceEEEEEECCHHHHHH
Confidence 567889999888766 542 2222222 45788899988 677765554
No 14
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=53.55 E-value=58 Score=23.21 Aligned_cols=47 Identities=15% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. |.--.+...-..|++.|||.| |++.+.+++
T Consensus 52 ~~~~~~~l~~~F~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 52 TTVDEVQLRQLFER-YGP----IESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp TTCCHHHHHHHHHH-HSC----EEEEEEEEETTTTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 45788899888855 553 222233334446888999987 788877665
No 15
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=52.60 E-value=44 Score=22.24 Aligned_cols=48 Identities=27% Similarity=0.232 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhHhCC-CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKS-KPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnv-d~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++.++ .+|. +...+.+ ...-..|++.|||.| |.+.+.+++
T Consensus 11 ~~~t~~~l~~~F~-~~G~~~v~~v~i---~~~~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 11 WWTTDEDLTEAVH-SLGVNDILEIKF---FENRANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp TTCCHHHHHHHHH-TTTCCCCCCEEE---EECTTTCCEEEEEEECC-CHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCCCceEEEEE---EecCCCCccCcEEEEEECCHHHHHH
Confidence 4568889988774 5662 2222222 122245788899988 777776653
No 16
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.21 E-value=38 Score=22.60 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.+||++-+.+ ++.=.+..++.. -..|++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~v~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (98)
T 2cqp_A 25 FTVSIDEILDFFYG-YQVIPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (98)
T ss_dssp TTCCHHHHHHHTTT-SCCCTTTCEEEE----CSSSCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHH-cCCccceEEEEE----CCCCCeeeEEEEEECCHHHHHH
Confidence 56788888877754 454333333322 245677888877 777776654
No 17
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=50.90 E-value=54 Score=23.53 Aligned_cols=47 Identities=6% Similarity=0.065 Sum_probs=32.2
Q ss_pred ecCCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCe
Q psy397 5 LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPEN 59 (202)
Q Consensus 5 ~~~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dl 59 (202)
.+.+.|+|.++. ...+.+.+.+++. ++-+-.++|++|....|++++.
T Consensus 11 ~~~~~v~l~It~----s~~~~~~~~~~v~----~~~TV~~LK~kI~~~~GiP~~~ 57 (95)
T 2kjr_A 11 GKSDFIKVNVSN----SHNDAVAFEVKLA----KDLTVAQLKTKLEILTGGCAGT 57 (95)
T ss_dssp CCCCEEEEEEEE----SSCSCEEEEEEEE----TTCBHHHHHHHHHHHHCSCTTT
T ss_pred CCCCeEEEEEEE----CCCCceEEEEEeC----ccCHHHHHHHHHHHHHCcCHHH
Confidence 345668887764 3444444444443 5677899999999999997554
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=48.80 E-value=35 Score=24.39 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCC-CCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFG-GGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FG-gGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++.+.+ +|.=.+..++ +...| .+++.|||.| |.+.+.+++
T Consensus 13 ~~~te~~l~~~F~~-~G~i~~v~i~---~~~~~~~~~~~g~afV~f~~~~~A~~ 62 (175)
T 3nmr_A 13 RTWSEKDLRELFEQ-YGAVYEINVL---RDRSQNPPQSKGCCFVTFYTRKAALE 62 (175)
T ss_dssp TTCCHHHHHHHHHT-TSCEEEEEEE---EECSSSSCEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCCEEEEEEE---ecCCCCCCCcceEEEEEECCHHHHHH
Confidence 56788999887754 5531222222 22223 3588899888 777776654
No 19
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=48.28 E-value=54 Score=21.33 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+ +.+|.=.+. .+...-..|++.|||.| |.+.+.+++
T Consensus 21 ~~~t~~~l~~~F-~~~G~i~~v----~i~~~~~~g~~~g~afV~f~~~~~a~~ 68 (87)
T 3s7r_A 21 WDTSKKDLKDYF-TKFGEVVDC----TIKMDPNTGRSRGFGFILFKDAASVEK 68 (87)
T ss_dssp TTCCHHHHHHHH-TTTSCEEEE----EEEECTTTCCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHH-HhCCCEEEE----EEeecCCCCccccEEEEEECCHHHHHH
Confidence 456888888877 445531122 22233345678888876 666665544
No 20
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=47.22 E-value=44 Score=22.07 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.+||++-+++ ++.-.+..++.. -..|++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~i~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ek1_A 25 FTVSIDEILDFFYG-YQVIPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (95)
T ss_dssp TTCCHHHHHHHTTT-SCBCTTCCEEEE----CTTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCccceEEEEe----CCCCCEeeEEEEEECCHHHHHH
Confidence 46788899877754 554233333322 245678888887 777776654
No 21
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.02 E-value=58 Score=21.36 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+++ +|.=.+. .+...-..+++.|||.| |++.+.+++
T Consensus 25 ~~~t~~~l~~~f~~-~G~v~~v----~i~~~~~~~~~~g~afV~f~~~~~A~~ 72 (95)
T 2cqc_A 25 LYTTERDLREVFSK-YGPIADV----SIVYDQQSRRSRGFAFVYFENVDDAKE 72 (95)
T ss_dssp SSCCHHHHHHHHHT-TSCEEEE----EEEECSSSSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCeeEE----EEEEcCCCCCcccEEEEEECCHHHHHH
Confidence 45788899888855 5531122 23333345678888877 777777655
No 22
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=46.18 E-value=22 Score=27.54 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+++.++| .+|..--++|++.+|++++.++++|
T Consensus 174 ~~ei~~~~---~~K~~~l~~l~~~lgi~~~~~ia~G 206 (258)
T 2pq0_A 174 STDVLPAG---GSKAEGIRMMIEKLGIDKKDVYAFG 206 (258)
T ss_dssp EEEEEESS---CCHHHHHHHHHHHHTCCGGGEEEEC
T ss_pred eEEEEECC---CChHHHHHHHHHHhCCCHHHEEEEC
Confidence 35566665 7899999999999999988887764
No 23
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.59 E-value=57 Score=22.07 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++.+++ +|. |.--.+...-..+++.|||.| |.+.+.+++
T Consensus 26 ~~~t~~~l~~~F~~-~G~----v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~ 73 (105)
T 2dh8_A 26 WSTTQETLRSYFSQ-YGE----VVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 73 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEEEEECSSSCCEEEEEEEEESSTTHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEEEEeeCCCCCCcceEEEEEECCHHHHHH
Confidence 56788999888755 553 222223333345678888877 677666554
No 24
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=45.51 E-value=59 Score=20.98 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|. |.--.+...-..|++.|||.| |+|.+.+++
T Consensus 16 ~~~t~~~l~~~F~-~~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 16 PEITTAAIAAAFA-PFGR----ISDARVVKDMATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp TTCCHHHHHHHHG-GGSC----EEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC----EeEEEEEecCCCCccceEEEEEECCHHHHHH
Confidence 4678899998886 4553 211223333345678888876 677776654
No 25
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=45.50 E-value=57 Score=23.33 Aligned_cols=45 Identities=2% Similarity=0.019 Sum_probs=31.3
Q ss_pred ecCCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCe
Q psy397 5 LSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPEN 59 (202)
Q Consensus 5 ~~~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dl 59 (202)
|+++.++|+++. .+.+++.|.|. +|=+-+.|.++.|+..|++++.
T Consensus 1 ~~~~~i~ikVk~------~~g~~v~~~vk----~~t~l~kl~~~y~~~~gi~~~~ 45 (91)
T 2io0_B 1 MANDHINLKVAG------QDGSVVQFKIK----RHTPLSKLMKAYCERQGLSMRQ 45 (91)
T ss_dssp ---CEEEEEEEC------TTSCEEEEEEE----TTSCTHHHHHHHHHHTTCCSTT
T ss_pred CCCCeEEEEEEC------CCCCEEEEEEC----CCChHHHHHHHHHHHhCCCccc
Confidence 667888998874 23457777773 4455688999999999997653
No 26
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=44.44 E-value=30 Score=26.57 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 40 VKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 40 PSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+|...-++|++.+|++++.++.+|
T Consensus 199 ~~K~~~l~~l~~~lgi~~~~~i~~G 223 (274)
T 3fzq_A 199 FHKGKAIKRLQERLGVTQKETICFG 223 (274)
T ss_dssp CSHHHHHHHHHHHHTCCSTTEEEEC
T ss_pred CCHHHHHHHHHHHcCCCHHHEEEEC
Confidence 6899999999999999988887765
No 27
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=44.22 E-value=54 Score=21.47 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. ...+.+. . ..|++.|||.| |.+.+.+++
T Consensus 18 ~~~t~~~l~~~f~~-~G~-v~~~~i~---~--~~g~~~g~afV~f~~~~~a~~ 63 (92)
T 2dgv_A 18 FDFTWKMLKDKFNE-CGH-VLYADIK---M--ENGKSKGCGVVKFESPEVAER 63 (92)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE---E--SSSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE---c--cCCCcceEEEEEECCHHHHHH
Confidence 45678888887765 553 1222222 2 35677888877 777776654
No 28
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=43.98 E-value=36 Score=22.83 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+++ +|. |.--.+...-..|++.|||.| |++.+.+++
T Consensus 12 ~~~t~~~l~~~F~~-~G~----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 12 YDQTEEQILDLCSN-VGP----VINLKMMFDPQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCBCTTTCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EEEEEEEeCCCCCccceEEEEEECCHHHHHH
Confidence 45678888887754 452 222223333445677888877 777776654
No 29
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.52 E-value=40 Score=24.92 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCC---CCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKSK---PENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnvd---~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+-|..- -.+.+.+||++-.+..=.+. .+..++.+ + .|+++|||.| |.+.+.+++
T Consensus 25 ~v~V~nL-p~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~----~gr~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 25 IVRMRGL-PFTATAEEVVAFFGQHCPITGGKEGILFVTY-P----DGRPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp EEEECSC-CTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-T----TSCEEEEEEECCSSHHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHhhCCccCCcceEEEEEC-C----CCCEeeEEEEEECCHHHHHH
Confidence 4444443 25678999999886543332 34444444 2 4678888888 556655543
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=43.44 E-value=56 Score=22.55 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|.=.+.-++. .-..+++.|||.| |.+.+.+++
T Consensus 35 ~~~t~~~l~~~F~-~~G~i~~v~i~~----~~~~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpz_A 35 QEFGDQDLLQMFM-PFGNVVSAKVFI----DKQTNLSKCFGFVSYDNPVSAQA 82 (115)
T ss_dssp SSCCHHHHHHHHG-GGSCCSEEEEEE----CSSSCSEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEEE----CCCCCCcCccEEEEECCHHHHHH
Confidence 4578899988886 455422332322 2234678888877 777776654
No 31
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.34 E-value=73 Score=21.43 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+++ +|.=.+. .+...-..|++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~i~~v----~i~~~~~~g~~~g~afV~f~~~~~a~~ 72 (103)
T 2cqg_A 25 WKTTEQDLKEYFST-FGEVLMV----QVKKDLKTGHSKGFGFVRFTEYETQVK 72 (103)
T ss_dssp SSCCHHHHHHHHGG-GSCEEEE----EEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCCeEEE----EEEecCCCCCccceEEEEECCHHHHHH
Confidence 45788888887754 5531122 23333345778888877 777776654
No 32
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.22 E-value=26 Score=23.74 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|.=.+.. +... .|++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~-~~G~i~~v~----i~~~--~g~~~g~afV~f~~~~~A~~ 70 (103)
T 2d9p_A 25 DGIDDERLRKAFS-PFGTITSAK----VMME--GGRSKGFGFVCFSSPEEATK 70 (103)
T ss_dssp TTCCHHHHHHTTT-TTSCEEEEE----EEEC--SSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCCEEEEE----EEcC--CCCcCEEEEEEECCHHHHHH
Confidence 4577888887765 455311222 2222 6778888877 777776654
No 33
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=42.53 E-value=19 Score=22.94 Aligned_cols=48 Identities=15% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
...+.++|++-+.+ +|. ...+ .+...-..|++.|||.| |+|.+.+++.
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v---~i~~~~~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 9 VNTTVEDVKHYFEQ-FGK-VDDA---MLMFDKTTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp SSCCHHHHHHHHHT-TSC-CSEE---CCCBCSSSTTSCBEEEEECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEE---EEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 45778899887755 554 2222 22333345677888877 7888877664
No 34
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=42.14 E-value=29 Score=24.64 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=13.6
Q ss_pred CEEEEEEEE-eCCHHHHHh
Q psy397 72 GKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 72 GkStGfA~I-YDS~E~aKK 89 (202)
|++.|||.| |.+.+.|++
T Consensus 65 ~~~~G~~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEK 83 (104)
T ss_dssp SSSEEEEEEEESCHHHHHH
T ss_pred CCccEEEEEEECCHHHHHH
Confidence 477888887 888877754
No 35
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.42 E-value=58 Score=21.82 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|.= ..+.+ ...-..|++.|||.| |.+.+.+++
T Consensus 18 ~~~~~~~l~~~f~~-~G~i-~~~~i---~~~~~~g~~~g~afV~f~~~~~a~~ 65 (104)
T 1p1t_A 18 YEATEEQLKDIFSE-VGPV-VSFRL---VYDRETGKPKGYGFCEYQDQETALS 65 (104)
T ss_dssp TTSCHHHHHHHHHT-TSCC-SEEEE---EEETTTTEEEEEEEEECSCHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCCe-eEEEE---EeCCCCCccceEEEEEECCHHHHHH
Confidence 45788899888864 5532 22222 223346788899987 777777654
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=41.00 E-value=86 Score=22.19 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.+++++..+ .||.=.+..++ ..-..|++.|||.| |++.+.|++
T Consensus 16 ~~~te~~L~~~F~-~~G~i~~v~i~----~d~~tg~~rG~aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 16 DNVRETFLKDMCR-KYGEVEEVEIL----LHPRTRKHLGLARVLFTSTRGAKE 63 (110)
T ss_dssp TTCCHHHHHHHHT-TTSCEEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCCeeEEEEE----ECCCCCceeeEEEEEECCHHHHHH
Confidence 5678888888774 45542222232 33345788898877 788777654
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=39.79 E-value=84 Score=21.14 Aligned_cols=47 Identities=19% Similarity=0.408 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. |.--.+...-..|++.|||.| |.+.+.+++
T Consensus 33 ~~~t~~~l~~~f~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 80 (106)
T 1p27_B 33 EEATEEDIHDKFAE-YGE----IKNIHLNLDRRTGYLKGYTLVEYETYKEAQA 80 (106)
T ss_dssp TTCCHHHHHHHHGG-GSC----EEEEEEEECTTTSSEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHhc-cCC----eEEEEEEecCCCCceeeEEEEEECCHHHHHH
Confidence 46788999887754 553 222233444456788888887 788776654
No 38
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.66 E-value=23 Score=24.42 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++.=.+. +..+...+. .|++.|||.| |++.+.+++
T Consensus 35 ~~~t~~~l~~~f~~~G~v~-~~~~~~~~~----~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 35 PRVTERDLVSLFARFQEKK-GPPIQFRMM----TGRMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp TTCCHHHHHHHTHHHHHSS-SSCCEEEEE----CSSSCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCcc-ceEEEEEcC----CCccceEEEEEECCHHHHHH
Confidence 5678899998776543332 222222222 4556677766 777766654
No 39
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=38.59 E-value=71 Score=20.67 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++-+++ +|.=.+. .+...-..|++.|||.| |.+.+.+++
T Consensus 16 ~~~t~~~l~~~F~~-~G~i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 63 (89)
T 3ucg_A 16 YGATAEELEAHFHG-CGSVNRV----TILCDKFSGHPKGFAYIEFSDKESVRT 63 (89)
T ss_dssp TTCCHHHHHHHHGG-GCCEEEE----EEEESCSSSSCCEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHHh-CCCEEEE----EEEecCCCCCcceEEEEEECCHHHHHH
Confidence 45688999888864 5531122 22233334555666655 566655544
No 40
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=37.29 E-value=36 Score=26.32 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+++.++| .+|...-++|++.+|++++.++.+|
T Consensus 186 ~ei~~~~---~~K~~~l~~l~~~lgi~~~~~ia~G 217 (268)
T 3r4c_A 186 ADVNVAG---TSKATGLSLFADYYRVKVSEIMACG 217 (268)
T ss_dssp EEEEETT---CCHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred EEEeeCC---CCHHHHHHHHHHHcCCCHHHEEEEC
Confidence 5566655 7899999999999999988888765
No 41
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=37.04 E-value=36 Score=26.66 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=24.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 31 DVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 31 dV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
++..+| .++...-++|++.+|++++.++.+|
T Consensus 195 ei~~~~---~~K~~~l~~l~~~lgi~~~~~i~~G 225 (290)
T 3dnp_A 195 NIVPKG---VSKEAGLALVASELGLSMDDVVAIG 225 (290)
T ss_dssp EEEETT---CCHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred EEEECC---CCHHHHHHHHHHHcCCCHHHEEEEC
Confidence 455554 6899999999999999988877764
No 42
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=36.48 E-value=1.1e+02 Score=21.34 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
...+.++|++.++ .+|. |.-..+...-..|++.|||.| |.+.+.+++.
T Consensus 36 ~~~te~~l~~~F~-~~G~----i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 84 (108)
T 2jrs_A 36 FNITEDMLRGIFE-PFGR----IESIQLMMDSETGRSKGYGFITFSDSECAKKA 84 (108)
T ss_dssp SSCCHHHHHHHHT-TTSC----EEEEEEEEETTTTEEEEEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC----eEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 4578888888774 4553 222233344456788899987 7888777653
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.04 E-value=95 Score=20.62 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHhCCCC-CeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKP-ENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~-dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++.+.+ +|.=. +.-++ ..-..|++.|||.| |.+.+.+++
T Consensus 19 ~~~t~~~l~~~F~~-~G~i~~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 67 (99)
T 2div_A 19 PYMDENFISRAFAT-MGETVMSVKII----RNRLTGIPAGYCFVEFADLATAEK 67 (99)
T ss_dssp TTCCHHHHHHHHHH-TTCCCCEEEEE----ECSSSCCEEEEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCCcceEEEEe----ecCCCCCcCCEEEEEeCCHHHHHH
Confidence 46788999887754 55322 33333 22345678888877 677776654
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=35.91 E-value=1.1e+02 Score=21.15 Aligned_cols=67 Identities=13% Similarity=0.184 Sum_probs=35.8
Q ss_pred ecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 15 RKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 15 RKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
....+|--.+-..+ -|..-. .+.+.+||++-+++ +|. |.=-.+...-..|++.|||.| |.+.+.|++
T Consensus 9 ~~~~en~~~~gt~l--fV~nLp-~~~te~~L~~~F~~-~G~----I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 9 HHHHENLYFQGTNL--IVNYLP-QNMTQDELRSLFSS-IGE----VESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp -------CCCCSEE--EEESCC-TTCCHHHHHHHHHT-TSC----EEEEEEEECSSSCCEEEEEEEEESSHHHHHH
T ss_pred ccccccccCCCCEE--EEeCCC-CCCCHHHHHHHHHh-cCC----EEEeEeeecCCCCcccccEEEEECCHHHHHH
Confidence 34455655554433 344432 56788999987754 553 111122233345778899887 788877754
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=35.54 E-value=1e+02 Score=20.91 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
+-|..-. ...+.++|++.+++ +|. |.-..+......|++.|||.| |.+.+.+++
T Consensus 29 l~V~nlp-~~~t~~~l~~~F~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 83 (110)
T 1oo0_B 29 LFVTSIH-EEAQEDEIQEKFCD-YGE----IKNIHLNLDRRTGFSKGYALVEYETHKQALA 83 (110)
T ss_dssp EEEESCC-TTCCHHHHHHHHGG-GSC----EEEEECCBCTTTSSBCSEEEEEESSHHHHHH
T ss_pred EEEeCCC-CCCCHHHHHHHHHh-cCC----EEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 3344433 46788899887754 453 222233334445677777776 777776654
No 46
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=35.37 E-value=1.1e+02 Score=22.10 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeE
Q psy397 7 ASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENI 60 (202)
Q Consensus 7 ~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlV 60 (202)
++.|++.+.. ..++++.+.++ . .++-+-.++|+||....|++++.-
T Consensus 12 ~~~v~l~It~----s~~~~~~~e~~--v--~~~~TV~~LK~kIe~~~Gip~~~Q 57 (97)
T 2kj6_A 12 DDSVHLHITH----ANLKSFSADAR--F--SPQMSVEAVKEKLWKKCGTSVNSM 57 (97)
T ss_dssp CCCEEEEEEE----TTSSCCCEEEE--E--CTTCCHHHHHHHHHHHHCCCTTSE
T ss_pred CceEEEEEEE----CCCCceEEEEE--e--CCCChHHHHHHHHHHHHCcCHHHe
Confidence 3457777654 34443333333 2 267889999999999999976653
No 47
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.12 E-value=1e+02 Score=20.74 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=32.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 31 DVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 31 dV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
-|..-. .+.+.++|++-+++. ++ .=-.+...-..|++.|||.| |.+.+.+++.
T Consensus 19 ~V~nLp-~~~t~~~l~~~F~~~-gi-----~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 19 YVGNLP-FNTVQGDIDAIFKDL-SI-----RSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp EEESCC-TTCCHHHHHHHTTTS-CE-----EEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred EEeCCC-CCCCHHHHHHHHHhC-Cc-----eEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 344433 567888988887655 52 11223333345678888876 7787777654
No 48
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=34.89 E-value=34 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEe
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAF 63 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVf 63 (202)
+.+...+++++||+.++++++.|++.
T Consensus 59 ~~~~~~~l~~~la~~~~~~~~~i~~~ 84 (361)
T 3ftb_A 59 PDVNYRRLNKSIENYLKLKDIGIVLG 84 (361)
T ss_dssp CCTTCHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCccHHHHHHHHHHHhCCCcceEEEc
Confidence 44567899999999999998888774
No 49
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=34.80 E-value=17 Score=24.64 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=31.0
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+-|-.-. .+.+.++|++.+++.-.+.. .++..-.| |++.|||.| |.+.+.+++
T Consensus 19 ~l~V~nLp-~~~t~~~l~~~F~~~G~v~~--~~~~~~~~----g~~~g~afV~f~~~~~a~~ 73 (101)
T 1fj7_A 19 NLFIGNLN-PNKSVAELKVAISELFAKND--LAVVDVRT----GTNRKFGYVDFESAEDLEK 73 (101)
T ss_dssp EEEEECCC-TTSCHHHHHHHHHHHHHHHT--CCCCEEEE----ETTTTEEEEEESSHHHHHH
T ss_pred EEEEeCCC-CCCCHHHHHHHHHHhCCcce--EEEecCCC----CCcCcEEEEEECCHHHHHH
Confidence 33444443 56789999998876644433 33444444 344556655 666665544
No 50
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=34.33 E-value=22 Score=28.04 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+.|...+++++||+.++++++.|++.+
T Consensus 49 ~~~~~~~lr~~la~~~~~~~~~i~~t~ 75 (337)
T 3p1t_A 49 PFDAEPRVMRKLAEHFSCPEDNLMLVR 75 (337)
T ss_dssp CTTHHHHHHHHHHHHHTSCGGGEEEES
T ss_pred CCCchHHHHHHHHHHhCcCHHHEEEeC
Confidence 456779999999999999887776643
No 51
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=33.89 E-value=1.2e+02 Score=21.19 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-++. +|. |.=-.+...-..|++.|||.| |.+.+.+++
T Consensus 12 ~~~~~~~l~~~f~~-~G~----i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 12 QNMTQEEFRSLFGS-IGE----IESCKLVRDKITGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEEEEEeCCCCCcceeEEEEEECCHHHHHH
Confidence 45688888887754 553 211222233335677888877 777777655
No 52
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=33.86 E-value=50 Score=25.64 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=25.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+++..+| .+|.+.-++|++.+|++++.++.+|
T Consensus 189 ~ei~~~~---~~K~~~l~~l~~~lgi~~~~~i~~G 220 (279)
T 4dw8_A 189 LELVPQG---IDKALSLSVLLENIGMTREEVIAIG 220 (279)
T ss_dssp EEEECTT---CCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEecCC---CChHHHHHHHHHHcCCCHHHEEEEC
Confidence 3455444 6899999999999999988887764
No 53
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=33.77 E-value=1.2e+02 Score=21.19 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+. .+|.=.+..++ .....|.+.|||.| |++.+.+.+
T Consensus 97 ~~~t~~~l~~~f~-~~G~i~~~~i~----~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 97 VNVDDETLRNAFK-DFPSYLSGHVM----WDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp TTCCHHHHHHHHT-TSTTEEEEEEE----ECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCCeeEEEEE----ecCCCCCcceEEEEEeCCHHHHHH
Confidence 4568888888774 45532222222 23345677888877 677776654
No 54
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=33.45 E-value=79 Score=21.22 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAK 88 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aK 88 (202)
...+.++|++-+.+ +|.=.+ + .+.+.- .|++.|||.| |.+.+.++
T Consensus 19 ~~~t~~~l~~~F~~-~G~i~~---v-~i~~~~-~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 19 VRMDETEIRSFFAR-YGSVKE---V-KIITDR-TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp TTCCHHHHHHHHGG-GSCEEE---E-EEEECT-TSCEEEEEEEEESSCCCHH
T ss_pred CCCCHHHHHHHHHh-CCCeEE---E-EEEECC-CCCccceEEEEECCHHHHH
Confidence 46788999887744 553112 2 222222 5677788876 55544443
No 55
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=33.34 E-value=86 Score=24.69 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHhCC--CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKS--KPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnv--d~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.|...+.. ....|.+.. .|++.|||.| |.+.+.+++
T Consensus 19 ~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 19 EKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHH
Confidence 567889999877777654 233333332 3445566665 666665543
No 56
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=33.29 E-value=1.1e+02 Score=20.68 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+.+ +|.= .. |. +...- .|++.|||.| |.+.+.+++
T Consensus 39 ~~~t~~~l~~~F~~-~G~i-~~--v~-i~~~~-~g~~~g~afV~f~~~~~a~~ 85 (107)
T 3ulh_A 39 FGVSDADIQELFAE-FGTL-KK--AA-VHYDR-SGRSLGTADVHFERKADALK 85 (107)
T ss_dssp TTCCHHHHHHHHHT-TSCE-EE--EE-EEECT-TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCe-EE--EE-EEECC-CCCcceEEEEEECCHHHHHH
Confidence 45778888887754 5531 11 11 22222 6678888877 778776654
No 57
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=33.02 E-value=26 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 39 SVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 39 TPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.|.-.+++++||+.++++++.|++.+
T Consensus 49 ~~~~~~lr~~la~~~~~~~~~i~~t~ 74 (350)
T 3fkd_A 49 EPDAGTLRQMLAKRNSVDNNAILVTN 74 (350)
T ss_dssp CTTCHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcHHHHHHHHHHHhCcCHHHEEEcC
Confidence 34448999999999999988888754
No 58
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=32.74 E-value=96 Score=19.72 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|. |.=-.+......|++.|||.| |.+.+.+++
T Consensus 11 ~~~t~~~l~~~f~-~~G~----i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 11 VNVDDETLRNAFK-DFPS----YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp TTCCHHHHHHHHT-TSTT----EEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC----eeEEEEEEcCCCCCccceEEEEECCHHHHHH
Confidence 4567888887774 3453 111223334445677888876 777776654
No 59
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=32.57 E-value=53 Score=25.91 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+++.++| .+|.+.-+.+++.+|.+++.++.+|
T Consensus 182 ~ei~~~~---~~K~~~~~~~~~~~~~~~~~~~~~G 213 (268)
T 1nf2_A 182 LEIVPKN---VDKGKALRFLRERMNWKKEEIVVFG 213 (268)
T ss_dssp EEEECTT---CCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEeCCC---CChHHHHHHHHHHcCCCHHHeEEEc
Confidence 5666655 6899999999999999988777765
No 60
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.54 E-value=17 Score=25.67 Aligned_cols=50 Identities=10% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
...+.++|++-+++ ||.=. ..++..-.|. +.|++.|||.| |++.+.+++.
T Consensus 18 ~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~-~~g~~~G~aFV~f~~~~~a~~A 68 (114)
T 2dnl_A 18 PDIDEDEITASFRR-FGPLV-VDWPHKAESK-SYFPPKGYAFLLFQEESSVQAL 68 (114)
T ss_dssp TTCCHHHHHHHTTT-TCCCC-EECTTSSSSC-CCSCTTSEEEECCSSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCEE-EEEeecCCCC-CCCCcccEEEEEECCHHHHHHH
Confidence 56788888877754 55322 2222222221 12677888887 8888877543
No 61
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=32.53 E-value=49 Score=25.68 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 40 VKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 40 PSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+|...-++|++.+|++++.++.+|
T Consensus 196 ~~K~~~l~~l~~~lgi~~~~~i~~G 220 (279)
T 3mpo_A 196 ASKGGTLSELVDQLGLTADDVMTLG 220 (279)
T ss_dssp CCHHHHHHHHHHHTTCCGGGEEEC-
T ss_pred CChHHHHHHHHHHcCCCHHHEEEEC
Confidence 6799999999999999988887764
No 62
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.42 E-value=44 Score=22.45 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.+||++.+... .+..++. ....+++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~~----~~~~~~~----~~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2fc8_A 25 EDTTEETLKESFDGS----VRARIVT----DRETGSSKGFGFVDFNSEEDAKA 69 (102)
T ss_dssp TTCCHHHHHHTSTTC----SEEEEEE----CSSSCSEEEEEEEECSSHHHHHH
T ss_pred CccCHHHHHHHhcCC----eEEEEEe----cCCCCCcCcEEEEEECCHHHHHH
Confidence 457888888777622 1222222 2234678888887 777777654
No 63
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=32.16 E-value=45 Score=26.51 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.++|.++| .+|...-+.+++.+|.+++.++++|
T Consensus 207 ~lei~~~~---~~K~~~~~~~~~~~~~~~~~~~~~G 239 (288)
T 1nrw_A 207 NFELSSRK---ASKGQALKRLAKQLNIPLEETAAVG 239 (288)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cEEEecCC---CChHHHHHHHHHHhCCCHHHEEEEc
Confidence 35666665 6788889999999999887777654
No 64
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=32.08 E-value=1.3e+02 Score=21.07 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. |.--.+......|++.|||.| |++.+.+++
T Consensus 73 ~~~~~~~l~~~f~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 120 (140)
T 2ku7_A 73 EEVDDKVLHAAFIP-FGD----ITDIQIPLDYETEKHRGFAFVEFELAEDAAA 120 (140)
T ss_dssp TTCCHHHHHHHHGG-GSC----EEEEECCCCTTTCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EEEEEEeecCCCCCcCcEEEEEECCHHHHHH
Confidence 45788899888854 553 111122222234567777776 777766654
No 65
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.70 E-value=75 Score=22.31 Aligned_cols=46 Identities=28% Similarity=0.300 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++-++ .+|.= ..|. +.+.-. |++.|||.| |++.+.+++
T Consensus 21 ~~~te~~L~~~F~-~~G~v-~~v~---i~~d~~-g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 21 TDATLDDIKEWLE-DKGQV-LNIQ---MRRTLH-KAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp TTCCHHHHHHHHH-TSSCE-EEEE---EECCCT-TSCCCEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-hcCCE-EEEE---EEECCC-CCCccEEEEEECCHHHHHH
Confidence 4678889988775 45631 2222 222223 667788866 888877765
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=31.64 E-value=1.7e+02 Score=22.10 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=32.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHhCC-CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 31 DVLHPGKPSVKKTDIREKLSKMFKS-KPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 31 dV~HpGkaTPSRkEIreKLAamlnv-d~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
-|-.-. ...+.++|++.+ ..+|. +...| .+...--.|++.|||.| |.+.+.+++
T Consensus 59 fVgnLp-~~~te~~L~~~F-~~~G~i~v~~v---~i~~d~~tg~skGfaFV~f~~~~~A~~ 114 (156)
T 3n9u_C 59 YVGSFS-WWTTDQQLIQVI-RSIGVYDVVEL---KFAENRANGQSKGYAEVVVASENSVHK 114 (156)
T ss_dssp EEECCC-TTCCHHHHHHHH-HHTTCCCEEEE---EEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred EEeCCC-CCCCHHHHHHHH-HHHCCccEEEE---EEEecCCCCccceEEEEEECCHHHHHH
Confidence 344433 567888998888 55663 22222 22223345778899988 888876654
No 67
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=31.53 E-value=96 Score=20.72 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCe----EEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPEN----IFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dl----VVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.+||++-++ .+|.=.+. .-+-.+...-..|++.|||.| |.+.+.+++
T Consensus 23 ~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~ 78 (99)
T 2la6_A 23 ENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKA 78 (99)
T ss_dssp SSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHH
Confidence 4578899988775 44532220 000122233345678888877 777776654
No 68
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=31.39 E-value=49 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 40 VKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 40 PSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+|...-++|++.+|++++.++.+|
T Consensus 210 ~~K~~~l~~l~~~lgi~~~e~ia~G 234 (283)
T 3dao_A 210 VSKWTALSYLIDRFDLLPDEVCCFG 234 (283)
T ss_dssp CCHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEC
Confidence 6899999999999999988887764
No 69
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=31.27 E-value=27 Score=33.39 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=36.3
Q ss_pred ceeEEEEEEcCCCCCCCHHHHHHHHHhHhC--CCCCeEEEeceeecCCCC
Q psy397 25 RKQMVVDVLHPGKPSVKKTDIREKLSKMFK--SKPENIFAFGFQTNFGGG 72 (202)
Q Consensus 25 RREv~fdV~HpGkaTPSRkEIreKLAamln--vd~dlVVVfg~kT~FGgG 72 (202)
+|=+.+.+.-.+-+..-+.+|+++|++.|| .++++|+|-.-.||-|-+
T Consensus 54 ~rvv~Vs~D~~~~~~~v~~~V~~~L~~~~g~~~~~~nV~isaTHTHSgP~ 103 (646)
T 2zws_A 54 RRLVYVNTDLGMIFQAVHLKVLARLKAKYPGVYDENNVMLAATHTHSGPG 103 (646)
T ss_dssp CEEEEEEESSSCCCHHHHHHHHHHHHHHSTTTCCTTTEEEEECCBSBEEC
T ss_pred CEEEEEEECcccCCHHHHHHHHHHHHHHhCCCCChhHEEEEeeeeCCCCc
Confidence 333333344334444458999999999999 899999999999999976
No 70
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.70 E-value=34 Score=21.62 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAK 88 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aK 88 (202)
.+.+.++|++-+++ +|.=.+..++.+ -..|++.|||.| |.|.+.++
T Consensus 10 ~~~t~~~l~~~F~~-~G~v~~v~i~~~----~~~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 10 WQTTQEGLREYFGQ-FGEVKECLVMRD----PLTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp SSCCSHHHHHHHTT-TSCCCCEEEECC----CCSSSCSSEEEECCCCTTHHH
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEecC----CCCCCcCceEEEEEcCHHHHH
Confidence 45678888887754 554233333332 234567777777 56655554
No 71
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=30.40 E-value=51 Score=26.09 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+++..+| .+|..-.++|++.+|.+++.++.+|
T Consensus 201 ~ei~~~~---~~K~~al~~l~~~lgi~~~~~ia~G 232 (285)
T 3pgv_A 201 LEVMAGG---VSKGHALEAVAKMLGYTLSDCIAFG 232 (285)
T ss_dssp EEEEETT---CSHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred EEEecCC---CChHHHHHHHHHHhCCCHHHEEEEC
Confidence 3455444 6788888889999999877777654
No 72
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=30.19 E-value=95 Score=23.25 Aligned_cols=54 Identities=24% Similarity=0.224 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCC---CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKS---KPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnv---d~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+-|-.-- .+.+.+||++-+.. ++. -.+..++.+ . . |+++|||.| |++.+.+++
T Consensus 46 ~lfVgnLp-~~~te~dL~~~F~~-~G~v~~v~~v~i~~d---~-~-g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 46 VVKLRGLP-WSCSVEDVQNFLSD-CTIHDGAAGVHFIYT---R-E-GRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp EEEEESCC-TTCCHHHHHHHTTT-CCCSSSSTTEEEEEC---S-S-SCEEEEEEEECSSHHHHHH
T ss_pred EEEEeCCC-CCCCHHHHHHHHHH-hCCcCceeEEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 33444432 56788999887755 564 223333332 2 2 678888887 667666553
No 73
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=29.85 E-value=59 Score=22.18 Aligned_cols=24 Identities=4% Similarity=-0.060 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHhHhCCCCCeEEE
Q psy397 39 SVKKTDIREKLSKMFKSKPENIFA 62 (202)
Q Consensus 39 TPSRkEIreKLAamlnvd~dlVVV 62 (202)
+-+-.++|++|++..|++++..-+
T Consensus 31 ~~TV~~LK~~i~~~~gip~~~qrL 54 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQSFQKL 54 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEE
T ss_pred cCcHHHHHHHHHHHHCcCHHHEEE
Confidence 467799999999999997555443
No 74
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=29.68 E-value=56 Score=25.71 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 40 VKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 40 PSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+|.+.-+.+++.+|.+++.++.+|
T Consensus 190 ~~K~~~~~~l~~~l~i~~~~~~~~G 214 (271)
T 1rlm_A 190 LHKANGISRLLKRWDLSPQNVVAIG 214 (271)
T ss_dssp CSHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CChHHHHHHHHHHhCCCHHHEEEEC
Confidence 5788888999999999877776653
No 75
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.62 E-value=1.3e+02 Score=20.09 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
...+.+||++.+++ +|. ..-| .+...- .|++.|||.| |++.+.+++.
T Consensus 27 ~~~t~~~l~~~F~~-~G~---i~~v-~i~~~~-~g~~~g~afV~f~~~~~a~~A 74 (100)
T 2do4_A 27 FSCTKEELEEICKA-HGT---VKDL-RLVTNR-AGKPKGLAYVEYENESQASQA 74 (100)
T ss_dssp TTCCHHHHHHHHTT-TSC---EEEE-EEEECT-TSCEEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC---eEEE-EEEECC-CCCEEeEEEEEECCHHHHHHH
Confidence 45788899888754 553 1112 222222 5778888876 7787776553
No 76
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.41 E-value=76 Score=21.10 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. |.--.+...-..|++.|||.| |.+.+.+++
T Consensus 18 ~~~t~~~l~~~F~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 65 (99)
T 1whw_A 18 YTSSEEDLEKLFSA-YGP----LSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65 (99)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCCCTTTCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EeEEEEEecCCCCCcCeEEEEEECCHHHHHH
Confidence 45788899888754 452 111122233334566777766 777776654
No 77
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.17 E-value=53 Score=23.22 Aligned_cols=57 Identities=11% Similarity=0.054 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHH-HhcC
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLA-KKFE 91 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~a-KK~E 91 (202)
.+-|-.-- .+.+.++|++-+. .+|.-.+.+++..- -.|++.|||.| |.+.+.+ +.++
T Consensus 27 ~l~V~nLp-~~~te~~l~~~F~-~~G~v~~~~~~~~~----~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 27 CVYLKGLP-FEAENKHVIDFFK-KLDIVEDSIYIAYG----PNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp EEEEECCC-TTCCHHHHHHHSC-SSCBCTTTCEEEEC----TTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred EEEEeCCC-CCCCHHHHHHHHH-hcCCccceEEEEEC----CCCCCCeEEEEEECCHHHHHHHHH
Confidence 33444432 5677888887774 45543342333221 24677888877 4555444 3344
No 78
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=29.08 E-value=33 Score=27.71 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+.|.-.+++++||+.+|++++.|++.+
T Consensus 63 ~~~~~~~lr~~la~~~g~~~~~i~~t~ 89 (360)
T 3hdo_A 63 PSASSQKLREVAGELYGFDPSWIIMAN 89 (360)
T ss_dssp CCSSCHHHHHHHHHHHTCCGGGEEEES
T ss_pred CCCchHHHHHHHHHHhCcCcceEEEcC
Confidence 345568999999999999888887753
No 79
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=28.90 E-value=33 Score=22.55 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhcC
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKFE 91 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~E 91 (202)
.+.+.++|++-+++ +|.=.+..++. .-..|++.|||.| |++.++.+.++
T Consensus 11 ~~~t~~~l~~~F~~-~G~i~~v~i~~----~~~~~~~~g~afV~f~~~~a~~a~~ 60 (90)
T 2ki2_A 11 YSATSEQVKELFSQ-FGKVFNVKLIY----DRETKKPKGFGFVEMQEESVSEAIA 60 (90)
T ss_dssp TTSSHHHHTTTHHH-HTCCSEEEECC----CSSSCCCCEEEEEEECTTHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEEE----cCCCCCcceEEEEEECCHHHHHHHH
Confidence 45778898887765 55422322222 2223566677766 67776444433
No 80
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=28.61 E-value=35 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+++--.+++++||+.++++++.|++.+
T Consensus 68 ~~~g~~~lr~~ia~~~~~~~~~i~~t~ 94 (423)
T 3ez1_A 68 GVAGLPSARALFAGYLDVKAENVLVWN 94 (423)
T ss_dssp CTTCCHHHHHHHHHHTTSCGGGEEECS
T ss_pred CCCChHHHHHHHHHHhCCChhhEEEeC
Confidence 344468999999999999988887754
No 81
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=28.42 E-value=49 Score=25.72 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=23.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 31 DVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 31 dV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+|.++| .++.+.-+.+++.+|++++.++++|
T Consensus 180 ei~~~~---~~K~~~~~~~~~~~~~~~~~~~~iG 210 (261)
T 2rbk_A 180 DVTAKG---DTKQKGIDEIIRHFGIKLEETMSFG 210 (261)
T ss_dssp EEESTT---CSHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EecCCC---CChHHHHHHHHHHcCCCHHHEEEEC
Confidence 455544 5788888999999999987777664
No 82
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=28.34 E-value=33 Score=27.97 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHhHhCCCCCeEEEe
Q psy397 39 SVKKTDIREKLSKMFKSKPENIFAF 63 (202)
Q Consensus 39 TPSRkEIreKLAamlnvd~dlVVVf 63 (202)
.|.-.+++++||+.++++++.|++.
T Consensus 57 ~~~~~~lr~~la~~~~~~~~~v~~~ 81 (356)
T 1fg7_A 57 ECQPKAVIENYAQYAGVKPEQVLVS 81 (356)
T ss_dssp CSSCHHHHHHHHHHHTSCGGGEEEE
T ss_pred CccHHHHHHHHHHHhCCChHHEEEc
Confidence 3457899999999999988877764
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.14 E-value=58 Score=21.80 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
...+.+||++-+++ +|.=.+. .+...-..+++.|||.| |++.+.+++.
T Consensus 20 ~~~t~~~l~~~F~~-~G~i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~A 68 (99)
T 2dgs_A 20 HNCGETELREYFKK-FGVVTEV----VMIYDAEKQRPRGFGFITFEDEQSVDQA 68 (99)
T ss_dssp SSCCHHHHHHHHSS-SSCEEEE----EECCCTTTCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCeEEE----EEEeCCCCCCCCceEEEEECCHHHHHHH
Confidence 46788888887755 4421122 22222234556677766 7777766543
No 84
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=28.08 E-value=44 Score=22.17 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.|.+.+.---...-|.=.+| |++.|||.| |.|.+.+++
T Consensus 18 ~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~----~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 18 EKIKKDELKKSLHAIFSRFGQILDILVSRS----LKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp TTSCHHHHHHHHHHHHGGGSCEEEEECCHH----HHHTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEEEEcC----CCcCcEEEEEeCCHHHHHH
Confidence 567889999655544433112222221222 344566655 777776644
No 85
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=27.83 E-value=1.5e+02 Score=20.68 Aligned_cols=45 Identities=13% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++-++ .||.=.+.-++. . .+.+.|||.| |++.+.+++
T Consensus 15 ~~~te~~L~~~F~-~~G~v~~v~i~~----d--~~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 15 KSIDNKALYDTFS-AFGNILSCKVVC----D--ENGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp TTCCHHHHHHHHG-GGSCEEEEEEEE----E--TTEEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCCEEEEEEee----c--CCCCCceEEEEECCHHHHHH
Confidence 5678889988775 466411222222 1 2346777776 677776654
No 86
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=27.70 E-value=1.2e+02 Score=19.60 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=23.0
Q ss_pred eeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeE
Q psy397 26 KQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENI 60 (202)
Q Consensus 26 REv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlV 60 (202)
+.+.++|. ++-+-.++|++|++..+++++..
T Consensus 14 ~~~~~~v~----~~~tV~~lK~~i~~~~~i~~~~q 44 (85)
T 3mtn_B 14 KTITLEVE----PSDTIENVKAKIQDKEGIPPDQQ 44 (85)
T ss_dssp CEEEEEEC----TTCBHHHHHHHHHHHHCCCGGGC
T ss_pred CEEEEEEC----CCCCHHHHHHHHHHHHCcChHHE
Confidence 44555543 56678999999999999976554
No 87
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.36 E-value=1.4e+02 Score=19.94 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|. |.--.+...-..|++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~f~-~~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 72 (103)
T 2cq0_A 25 EDTRETDLQELFR-PFGS----ISRIYLAKDKTTGQSKGFAFISFHRREDAAR 72 (103)
T ss_dssp TTCCHHHHHTTST-TTCC----EEEEEEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC----eEEEEEeecCCCCceeeEEEEEECCHHHHHH
Confidence 4677888876664 3442 222223333345678888877 777776654
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.32 E-value=83 Score=20.29 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+. .+|. |.--.+...-..|++.|||.| |.+.+.+++
T Consensus 15 ~~~t~~~l~~~f~-~~G~----i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~ 62 (85)
T 1x4e_A 15 PGTTDQDLVKLCQ-PYGK----IVSTKAILDKTTNKCKGYGFVDFDSPSAAQK 62 (85)
T ss_dssp TTCCHHHHHTTST-TTSC----EEEEEEECCSSSCSCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC----eEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 4567778776654 3442 222223333345677788876 788777765
No 89
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.14 E-value=1.3e+02 Score=19.37 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=27.6
Q ss_pred CeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeE
Q psy397 8 STVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENI 60 (202)
Q Consensus 8 ~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlV 60 (202)
.++.|.++.. +-+.+.++|. ++-+-.++|+++++..|++++..
T Consensus 6 ~~m~i~vk~~------~g~~~~~~v~----~~~tV~~LK~~i~~~~~i~~~~q 48 (81)
T 2dzi_A 6 SGMQLTVKAL------QGRECSLQVP----EDELVSTLKQLVSEKLNVPVRQQ 48 (81)
T ss_dssp SSEEEEEEET------TSCEEEEEEC----SSCBHHHHHHHHHHHTCCCTTTC
T ss_pred CcEEEEEEeC------CCCEEEEEEC----CCCcHHHHHHHHHHHHCcCHHHE
Confidence 3466666521 2234455542 44567999999999999975543
No 90
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=27.09 E-value=33 Score=21.65 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+.+ +|.= ..+ .+...-..|++.|||.| |.+.+.+++
T Consensus 9 ~~~t~~~l~~~F~~-~G~i-~~v---~i~~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 1iqt_A 9 PDTPEEKIREYFGG-FGEV-ESI---ELPMDNKTNKRRGFCFITFKEEEPVKK 56 (75)
T ss_dssp SSCCHHHHHHHHHH-HSCC-SEE---CCCCSCCCSSSCCCEEEECSSSHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCe-EEE---EEEecCCCCCcCCEEEEEECCHHHHHH
Confidence 45678888888755 5542 222 12223334566777766 666655544
No 91
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.00 E-value=1.4e+02 Score=19.98 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+++ +|. |.--.+...-..+++.|||.| |++.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (105)
T 1x5u_A 25 EKVSEPLLWELFLQ-AGP----VVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 72 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCBCSSSCSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEEEEEecCCCCcCCcEEEEEECCHHHHHH
Confidence 45788888887754 442 221223333334566777766 677766654
No 92
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=26.82 E-value=1.3e+02 Score=19.26 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. ..-+.=......++++.|||.| |.+.+.+++
T Consensus 14 ~~~t~~~l~~~F~~-~G~---i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~ 62 (88)
T 4a8x_A 14 RNVTKDHIMEIFST-YGK---IKMIDMPVERMHPHLSKGYAYVEFENPDEAEK 62 (88)
T ss_dssp TTCCHHHHHHHHHT-TSC---EEEEECCEETTEEEEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC---EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHH
Confidence 45688899887754 552 1122222333334457788876 777776654
No 93
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=26.81 E-value=50 Score=25.29 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=25.3
Q ss_pred eEEEEEEcC-CCCCCCHHHHH-----HHHHhHhCCC-CCeEEEe
Q psy397 27 QMVVDVLHP-GKPSVKKTDIR-----EKLSKMFKSK-PENIFAF 63 (202)
Q Consensus 27 Ev~fdV~Hp-GkaTPSRkEIr-----eKLAamlnvd-~dlVVVf 63 (202)
-+.+.=.|| |.++||++|+. .+.++++|+. -|-++|-
T Consensus 70 ~vIl~HNHPSG~~~PS~~D~~~T~~l~~a~~ll~I~llDHiIig 113 (126)
T 2qlc_A 70 SIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDHVIVG 113 (126)
T ss_dssp EEEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEeeeEEEe
Confidence 344445788 79999999985 4455667775 5666663
No 94
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=26.79 E-value=1.3e+02 Score=19.50 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=25.0
Q ss_pred CeeeecCCeEEEEeecceeccCccceeEEEEEEcCCCCCCCHHH--HHHHHHhHhC
Q psy397 1 MKTVLSASTVTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTD--IREKLSKMFK 54 (202)
Q Consensus 1 ~~~~~~~~~vTIrtRKf~eNpLL~RREv~fdV~HpGkaTPSRkE--IreKLAamln 54 (202)
|+|.|.++.+.+ +.+.....++++....+...+..--.+.+.. .-+++++.++
T Consensus 1 ~~~~~~~~v~~l-~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~ 55 (115)
T 1thx_A 1 METAMSKGVITI-TDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS 55 (115)
T ss_dssp -----CCSEEEC-CGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT
T ss_pred CcccccCceEEe-eccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhC
Confidence 788888776666 4444454556666666555554322333322 2355666654
No 95
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.57 E-value=1.4e+02 Score=19.54 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|.=.+. .+...-..+++.|||.| |.+.+.+++
T Consensus 15 ~~~t~~~l~~~f~~-~G~v~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 15 FNITEDMLRGIFEP-FGKIDNI----VLMKDSDTGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp TTCCHHHHHHHHTT-TSCEEEE----EEECCSSSCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCEeEE----EEeecCCCCceeeEEEEEECCHHHHHH
Confidence 45788888887754 4531122 22232234566677766 777777654
No 96
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=26.45 E-value=23 Score=24.92 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHhHhCC-CCCeE-EEeceeecCCCCEEEEEEEE-eCCHHHH
Q psy397 38 PSVKKTDIREKLSKMFKS-KPENI-FAFGFQTNFGGGKSTGFALI-YDSIDLA 87 (202)
Q Consensus 38 aTPSRkEIreKLAamlnv-d~dlV-VVfg~kT~FGgGkStGfA~I-YDS~E~a 87 (202)
++.+.++|++.++ .||. +...| ++.+-. .|++.|||.| |.+.+.+
T Consensus 19 ~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~----tg~srG~aFV~f~~~~~A 66 (95)
T 2lkz_A 19 PHTVVDSIMTALS-PYASLAVNNIRLIKDKQ----TQQNRGFAFVQLSSAMDA 66 (95)
T ss_dssp TTCCHHHHHHHST-TTCCCCGGGEECCCCSS----SSSCSSEEEEECSSSHHH
T ss_pred CcCCHHHHHHHHH-hhCCccEEEEEEEecCC----CCCCceEeEEEECCHHHH
Confidence 6778899998885 4553 43333 333322 3556666665 4444433
No 97
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=26.32 E-value=34 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 37 KPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 37 kaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
|=.|-|.++|+.||+.++++++.|-|+-
T Consensus 104 Ki~p~~~~m~~~ia~~L~~~~~~V~vKA 131 (152)
T 1iv3_A 104 KLGPHRKALVDSLSRLMRLPQDRIGLTF 131 (152)
T ss_dssp CCGGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4689999999999999999999998864
No 98
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=25.91 E-value=71 Score=25.62 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHhHhCC-CCCeEEEec
Q psy397 38 PSVKKTDIREKLSKMFKS-KPENIFAFG 64 (202)
Q Consensus 38 aTPSRkEIreKLAamlnv-d~dlVVVfg 64 (202)
+.|...+++++||+.+|+ +++.|++.+
T Consensus 65 ~~~~~~~l~~~la~~~g~~~~~~i~~~~ 92 (367)
T 3euc_A 65 PVPSSEALRAKLKEVMQVPAGMEVLLGN 92 (367)
T ss_dssp CCCCHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcC
Confidence 446689999999999999 777777653
No 99
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=25.89 E-value=39 Score=24.09 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=25.6
Q ss_pred CHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 41 KKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 41 SRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
..+||++.. +.||.=.+..++.. .-+++++.|||.| |.+.+.|.+
T Consensus 26 ~~~dl~~~f-~~~G~V~~v~i~~~---~~~~~~~~G~~FV~f~~~~~A~~ 71 (105)
T 2pe8_A 26 LEVETKEEC-EKYGKVGKCVIFEI---PGAPDDEAVRIFLEFERVESAIK 71 (105)
T ss_dssp CHHHHHHHG-GGGSCEEEEEEEEC---SSCCTTTSEEEEEEESSHHHHHH
T ss_pred HHHHHHHHH-HhcCCEEEEEEecC---CCCCCCCcEEEEEEECCHHHHHH
Confidence 477888776 47775333333322 2223556677776 777776543
No 100
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.86 E-value=50 Score=22.17 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|.=.+..++.+ ...+++.|||.| |.+.+.+++
T Consensus 22 ~~~t~~~l~~~f~~-~G~i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2cqb_A 22 EEVDDKVLHAAFIP-FGDITDIQIPLD----YETEKHRGFAFVEFELAEDAAA 69 (102)
T ss_dssp SSCCHHHHHHHHTT-TSCCCCEECCCC----SSSCCCSSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHhhc-cCCEEEEEEEec----CCCCCcceEEEEEECCHHHHHH
Confidence 45678888888855 554233332222 233566777776 666666554
No 101
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=25.68 E-value=73 Score=22.50 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++-+++ +|. ...|.+.. .. .|++.|||.| |+|.+.|++
T Consensus 17 ~~~t~~~l~~~F~~-~G~-i~~v~i~~--~~--~g~~~g~afV~F~~~~~A~~ 63 (116)
T 2fy1_A 17 RETNEKMLKAVFGK-HGP-ISEVLLIK--DR--TSKSRGFAFITFENPADAKN 63 (116)
T ss_dssp TTCCHHHHHHHHHT-SSC-CSEEEEEC--ST--TTTCCCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEE--CC--CCCcccEEEEEECCHHHHHH
Confidence 45788898887754 554 23333322 12 4567777776 777776654
No 102
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.50 E-value=1.4e+02 Score=23.14 Aligned_cols=24 Identities=4% Similarity=0.055 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEE
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIF 61 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVV 61 (202)
+.-+-.|+|++||+.+++++++..
T Consensus 35 ~d~TV~dLKe~ls~~~~iP~e~qr 58 (118)
T 2daf_A 35 VDTILKYLKDHFSHLLGIPHSVLQ 58 (118)
T ss_dssp SSSCSHHHHHHHHHHHTCCTTTEE
T ss_pred CCCcHHHHHHHHHhhhCCChHHEE
Confidence 567789999999999999877665
No 103
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=25.45 E-value=69 Score=25.64 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 40 VKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 40 PSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+|...-++|++.+|++++.++.+|
T Consensus 227 ~~K~~al~~l~~~lgi~~~e~i~~G 251 (304)
T 3l7y_A 227 LHKGWALQQLLKRWNFTSDHLMAFG 251 (304)
T ss_dssp CSHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred CCHHHHHHHHHHHhCcCHHHEEEEC
Confidence 6788889999999999888877764
No 104
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=25.40 E-value=71 Score=24.98 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.++|..+| .+|...-+.|++.+|.+++.++.+|
T Consensus 153 ~lei~~~~---~~K~~~l~~l~~~~~~~~~~~~~~G 185 (244)
T 1s2o_A 153 DVDLLPQR---SNKGNATQYLQQHLAMEPSQTLVCG 185 (244)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred eEEeccCC---CChHHHHHHHHHHhCCCHHHEEEEC
Confidence 35666665 6889999999999999887777765
No 105
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=25.38 E-value=68 Score=21.22 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
...+.++|++.+.+. + -|..+ -..|++.|||.| |.+.+.+++.
T Consensus 26 ~~~t~~~l~~~F~~~-g------~v~~~---~~~~~~~g~afV~f~~~~~a~~A 69 (96)
T 1fjc_A 26 FNITEDELKEVFEDA-L------EIRLV---SQDGKSKGIAYIEFKSEADAEKN 69 (96)
T ss_dssp SSCCHHHHHHHHCSE-E------EECCE---EETTEEEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHhhC-C------cEEEe---CCCCCcceEEEEEECCHHHHHHH
Confidence 456888888877653 2 11122 345678888887 7777766543
No 106
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=25.22 E-value=43 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 40 VKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 40 PSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+.-.+++++||+.+|++++.|++.+
T Consensus 65 ~~~~~lr~~la~~~~~~~~~v~~~~ 89 (365)
T 3get_A 65 DSMIELKSTLAQKYKVQNENIIIGA 89 (365)
T ss_dssp TTCHHHHHHHHHHHTCCGGGEEEES
T ss_pred CChHHHHHHHHHHhCCCcceEEECC
Confidence 3347999999999999888887754
No 107
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=25.21 E-value=79 Score=25.16 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=25.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+++..+| .+|...-+.|++.+|.+++.++.+|
T Consensus 190 lei~~~~---~~K~~~l~~l~~~~~~~~~~~~~~G 221 (282)
T 1rkq_A 190 LEILDKR---VNKGTGVKSLADVLGIKPEEIMAIG 221 (282)
T ss_dssp EEEEETT---CSHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEecCCC---CCCHHHHHHHHHHhCCCHHHEEEEC
Confidence 5666665 6889999999999999887777765
No 108
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.14 E-value=68 Score=21.46 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ ++.= ..+.+. ..-..+++.|||.| |.+.+.+++
T Consensus 22 ~~~t~~~l~~~f~~-~G~i-~~v~i~---~~~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 1x5s_A 22 FDTNEQSLEQVFSK-YGQI-SEVVVV---KDRETQRSRGFGFVTFENIDDAKD 69 (102)
T ss_dssp TTCCHHHHHHHHHH-HSCC-CEEEEC---CCSSSCSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCe-EEEEEE---eCCCCCCcccEEEEEECCHHHHHH
Confidence 56788999988865 5532 233221 22223556677766 777776654
No 109
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.01 E-value=96 Score=20.82 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeec-CCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTN-FGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~-FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+++ ||. |.--.+... -..+++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 25 FQANQREIRELFST-FGE----LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCCCCSSSCSSCSEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHc-cCC----eEEEEEecCCCCCCCcCceEEEEECCHHHHHH
Confidence 45788898887754 552 111122222 235566677766 677666654
No 110
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.94 E-value=1.7e+02 Score=20.05 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+. .++. |.-..+...-..+++.|||.| |.+.+.+++
T Consensus 27 ~~~t~~~l~~~F~-~~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 74 (116)
T 2cqd_A 27 YHTTDASLRKYFE-GFGD----IEEAVVITDRQTGKSRGYGFVTMADRAAAER 74 (116)
T ss_dssp SSCCHHHHHHHHH-TTSC----EEEEEESCCSSSCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC----eeEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 4678899988885 4553 111122222233566677766 777776654
No 111
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.72 E-value=1e+02 Score=20.22 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|.-.+.+.+ .+.|||.| |++.+.+++
T Consensus 18 ~~~t~~~l~~~F~-~~G~vv~~~~~----------~~~g~afV~f~~~~~A~~ 59 (93)
T 2cqh_A 18 PAVTADDLRQLFG-DRKLPLAGQVL----------LKSGYAFVDYPDQNWAIR 59 (93)
T ss_dssp TTCCHHHHHHHHH-HTTCCCSSCEE----------EETTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHH-HcCCceEEEEE----------cCCCEEEEEECCHHHHHH
Confidence 4568889988775 45642233333 24567777 777776644
No 112
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=24.53 E-value=1.1e+02 Score=22.25 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|.=.+. .+...-..|++.|||.| |++.+.+++
T Consensus 56 ~~~te~~L~~~F~-~~G~I~~v----~i~~d~~tg~~~G~afV~F~~~~~A~~ 103 (129)
T 2kxn_B 56 LYTTERDLREVFS-KYGPIADV----SIVYDQQSRRSRGFAFVYFENVDDAKE 103 (129)
T ss_dssp TSCCHHHHHHHHT-TTSCEEEE----EEECCSSSSCCCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCCeEEE----EEEecCCCCccceEEEEEECCHHHHHH
Confidence 4567888888774 45531122 22233334566777766 777777654
No 113
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.43 E-value=1.4e+02 Score=20.05 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCC-CEEEEEEEE-eCCHHHHHhc
Q psy397 29 VVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGG-GKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 29 ~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGg-GkStGfA~I-YDS~E~aKK~ 90 (202)
.+-|..-. .+.+.++|++.+++ +| ...|. +...-.. |++.|||.| |.+.+.+++.
T Consensus 17 ~l~V~nlp-~~~t~~~l~~~F~~-~G--i~~v~---i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 17 TAFLGNLP-YDVTEESIKEFFRG-LN--ISAVR---LPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp EEEEESCC-SSCCHHHHHHHTTT-SC--EEEEE---CCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred EEEEeCCC-CcCCHHHHHHHHHH-CC--ceEEE---EecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 34444432 56788888877754 45 22222 2222222 677777776 7777777653
No 114
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=24.43 E-value=31 Score=21.82 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCeEE
Q psy397 36 GKPSVKKTDIREKLSKMFKSKPENIF 61 (202)
Q Consensus 36 GkaTPSRkEIreKLAamlnvd~dlVV 61 (202)
|+..|+... ..+||+.+|++++.++
T Consensus 46 g~~~~~~~~-l~~ia~~l~~~~~~l~ 70 (76)
T 3bs3_A 46 NKSQPSLDM-LVKVAELLNVDPRQLI 70 (76)
T ss_dssp TSSCCCHHH-HHHHHHHHTSCGGGGB
T ss_pred CCCCCCHHH-HHHHHHHHCcCHHHHh
Confidence 656676554 5789999999877654
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=24.39 E-value=1.8e+02 Score=20.94 Aligned_cols=54 Identities=13% Similarity=0.229 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
+-|..-. ...+.++|++-+ +.+|.= ..+. +...-..|++.|||.| |.+.+.+++
T Consensus 73 l~v~nl~-~~~~~~~l~~~F-~~~G~v-~~~~---i~~~~~~g~~~g~afV~f~~~~~a~~ 127 (158)
T 2kn4_A 73 LKVDNLT-YRTSPDTLRRVF-EKYGRV-GDVY---IPRDRYTKESRGFAFVRFHDKRDAED 127 (158)
T ss_dssp EEEESCC-TTCCHHHHHHHH-HHHSCE-EEEE---CCCCSSCTTSCCEEEEEESBHHHHHH
T ss_pred EEEeCCC-CCCCHHHHHHHH-HhcCCe-EEEE---EeecCCCCccceEEEEEECCHHHHHH
Confidence 3344433 567899999888 556631 1121 2222224556667666 677666544
No 116
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=24.32 E-value=49 Score=21.89 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.+|+++.+.+. ++ ..+.+. ++.|||.| |.+.+.+++
T Consensus 15 ~~~t~~~l~~~F~~~-~v--~~~~i~---------~~~g~afV~f~~~~~a~~ 55 (88)
T 1wg1_A 15 QDSNCQEVHDLLKDY-DL--KYCYVD---------RNKRTAFVTLLNGEQAQN 55 (88)
T ss_dssp SSCCHHHHHHHTCSS-CC--CCEEEE---------GGGTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Ce--EEEEEe---------CCCcEEEEEECCHHHHHH
Confidence 567788998888665 44 334442 45567766 666655543
No 117
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=24.21 E-value=1.8e+02 Score=20.58 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAK 88 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aK 88 (202)
...+.++|++.++ .+|.= ..+ .+...-..|++.|||.| |++.+.+.
T Consensus 104 ~~~t~~~l~~~f~-~~G~v-~~v---~i~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 104 NYLNDDQVKELLT-SFGPL-KAF---NLVKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp TTCCHHHHHHHHH-TTSCE-EEE---EEEECTTTCSEEEEEEEEESSTTHHH
T ss_pred CcCCHHHHHHHHH-hcCCc-eEE---EEEecCCCCCcceEEEEEeCCHHHHH
Confidence 3567888888886 45531 112 22233235667777766 56655554
No 118
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=24.19 E-value=38 Score=27.68 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHhHhCCCCCeEEEecee
Q psy397 37 KPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66 (202)
Q Consensus 37 kaTPSRkEIreKLAamlnvd~dlVVVfg~k 66 (202)
|=.|-|.++++.||+.++++++.|-|.-=-
T Consensus 106 Ki~p~~~~m~~~ia~~L~~~~~~V~vKAtT 135 (159)
T 1t0a_A 106 KMAPHIEDMRQVLAADLNADVADINVKATT 135 (159)
T ss_dssp CCGGGHHHHHHHHHHHTTCCGGGEEEEEEC
T ss_pred cChHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 468999999999999999999999886433
No 119
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=24.13 E-value=79 Score=23.37 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHH---hHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q psy397 38 PSVKKTDIREKLS---KMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAK 88 (202)
Q Consensus 38 aTPSRkEIreKLA---amlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aK 88 (202)
.+.+.+++++.|- ..||. ...|.+. + .|++.|||.| |++.+.|.
T Consensus 39 ~~~~e~~L~~~L~~~F~~~G~-I~~v~i~--~----~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 39 PEVPKEKLQALLYALASSQGD-ILDIVVD--L----SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp TTSCHHHHHHHHHHHHHHHSC-EEEEEEC--C----CCSSCCCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCC-eEEEEec--c----CCCcCCEEEEEECCHHHHH
Confidence 5677888887544 44553 1223332 2 2345666665 77766554
No 120
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=23.81 E-value=40 Score=27.61 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=26.4
Q ss_pred EcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 33 LHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 33 ~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.-| |=.|-|.++++.||+.++++++.|-|.-
T Consensus 104 q~P-Ki~p~~~~m~~~ia~~L~~~~~~V~vKA 134 (160)
T 2pmp_A 104 QRP-KISPHKETIRSNLSKLLGADPSVVNLKA 134 (160)
T ss_dssp SSS-CCGGGHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cCC-cCHHHHHHHHHHHHHHHCCCcceEEEEE
Confidence 344 4679999999999999999999998864
No 121
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=23.71 E-value=40 Score=27.62 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHhHhCCCCCeEEEecee
Q psy397 37 KPSVKKTDIREKLSKMFKSKPENIFAFGFQ 66 (202)
Q Consensus 37 kaTPSRkEIreKLAamlnvd~dlVVVfg~k 66 (202)
|=.|-|.++++.||+.++++++.|-|.-=-
T Consensus 105 Ki~p~~~~m~~~ia~~L~~~~~~V~vKAtT 134 (160)
T 1gx1_A 105 KMLPHIPQMRVFIAEDLGCHMDDVNVKATT 134 (160)
T ss_dssp CCGGGHHHHHHHHHHHTTCCGGGEEEEEEC
T ss_pred cchHHHHHHHHHHHHHhCCCCceEEEEEcc
Confidence 468999999999999999999999886433
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=23.55 E-value=2.1e+02 Score=20.68 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+. .+|. |.--.+...-..|++.|||.| |++.+.+.+
T Consensus 114 ~~~t~~~l~~~F~-~~G~----i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 114 EDTEEHHLRDYFE-QYGK----IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp TTCCHHHHHHHHT-TTSC----EEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-cCCC----eEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 4567888887775 4553 211222333345778888887 777776653
No 123
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.45 E-value=1.8e+02 Score=19.79 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+.+ +|. ..-+ .+...- .|++.|||.| |.+.+.+++
T Consensus 35 ~~~t~~~l~~~F~~-~G~---i~~~-~i~~~~-~g~~~g~afV~f~~~~~a~~ 81 (114)
T 1x5o_A 35 LSMDEQELENMLKP-FGQ---VIST-RILRDS-SGTSRGVGFARMESTEKCEA 81 (114)
T ss_dssp TTCCHHHHHHTTTT-TSC---EEEE-EEEECS-SSCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC---EEEE-EEEECC-CCCcceEEEEEECCHHHHHH
Confidence 45678888776643 442 1112 222222 5778888887 777776654
No 124
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=23.19 E-value=95 Score=24.18 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=25.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
++|.++| .+|.+.-+++++.++.+++.++.+|
T Consensus 145 ~ei~~~~---~~K~~~l~~l~~~~~~~~~~~~~iG 176 (227)
T 1l6r_A 145 WHLMNRG---EDKAFAVNKLKEMYSLEYDEILVIG 176 (227)
T ss_dssp EEEEETT---CSHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred EEEecCC---CCHHHHHHHHHHHhCcCHHHEEEEC
Confidence 5566655 6889999999999999887777654
No 125
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=23.11 E-value=41 Score=27.01 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 39 SVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 39 TPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+.-.+++++||+.++++++.|++.+
T Consensus 66 ~~~~~~lr~~la~~~~~~~~~v~~~~ 91 (363)
T 3ffh_A 66 DGWASSLRKEVADFYQLEEEELIFTA 91 (363)
T ss_dssp ---CHHHHHHHHHHHTCCGGGEEEES
T ss_pred CcchHHHHHHHHHHhCCChhhEEEeC
Confidence 44568999999999999888887753
No 126
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=22.69 E-value=1.9e+02 Score=19.72 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .+|. |.-..+......|++.|||.| |++.+.+++
T Consensus 25 ~~~t~~~l~~~F~-~~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (115)
T 2dgo_A 25 PEITTEDIKAAFA-PFGR----ISDARVVKDMATGKSKGYGFVSFFNKWDAEN 72 (115)
T ss_dssp TTCCHHHHHHHHG-GGSC----EEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC----eEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4678899988886 4554 222223333346778888877 677776654
No 127
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=22.63 E-value=2.1e+02 Score=22.65 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++.++ .||.=.+..++.+ ..|++.|||.| |++.+.+.+
T Consensus 106 ~~~t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 106 PVVSNELLEQAFS-QFGPVEKAVVVVD-----DRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp TTCCHHHHHHHHG-GGSCEEEEEEEEE-----TTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEeeeC-----CCCCcCcEEEEEeCCHHHHHH
Confidence 4568889988885 5663223333322 24667777776 777766544
No 128
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=22.48 E-value=1.9e+02 Score=20.08 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++.++ .+|. |.-..+...-..|++.|||.| |.+.+.+++
T Consensus 32 ~~~t~~~l~~~F~-~~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~ 79 (126)
T 3ex7_B 32 EEATEEDIHDKFA-EYGE----IKNIHLNLDRRTGYLKGYTLVEYETYKEAQA 79 (126)
T ss_dssp TTCCHHHHHHHHH-TTSC----EEEEECCBCTTTSSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC----eEEEEEEecCCCCccceEEEEEECCHHHHHH
Confidence 5678899988875 4552 221222223235566677766 777776654
No 129
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=22.45 E-value=2e+02 Score=22.93 Aligned_cols=55 Identities=25% Similarity=0.236 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCC-CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKS-KPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnv-d~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
+-|-.-. ...+.++|++.+ +.|++ ....|. |.+.--.|++.|||.| |++.+.+++
T Consensus 71 lfVgnL~-~~~te~~L~~~F-~~~G~~~v~~v~---i~~d~~tg~skGfaFV~f~~~~~a~~ 127 (229)
T 3q2s_C 71 LYIGNLT-WWTTDEDLTEAV-HSLGVNDILEIK---FFENRANGQSKGFALVGVGSEASSKK 127 (229)
T ss_dssp EEEESCC-TTCCHHHHHHHH-HTTTCCCEEEEE---EEECTTTCCEEEEEEEEESCTTHHHH
T ss_pred EEEeCCC-CCCCHHHHHHHH-HHHCCcceEEEE---EEecCCCCccceEEEEEECCHHHHHH
Confidence 3344432 567888998888 55674 222222 2223335677888877 666655443
No 130
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=22.37 E-value=66 Score=22.43 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+.+ +|.=.+. .+...-..|++.|||.| |.+.+.+++
T Consensus 35 ~~~te~~L~~~F~~-~G~i~~v----~i~~~~~tg~~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 35 WQTTQEGLREYFGQ-FGEVKEC----LVMRDPLTKRSRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp TTCCHHHHHHHHTT-TSCEEEE----EECCCTTTCCCTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHc-cCCeEEE----EEEECCCCCCcCcEEEEEECCHHHHHH
Confidence 56788888877744 5531121 22222334666777766 777776654
No 131
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=22.32 E-value=31 Score=21.61 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCeE
Q psy397 36 GKPSVKKTDIREKLSKMFKSKPENI 60 (202)
Q Consensus 36 GkaTPSRkEIreKLAamlnvd~dlV 60 (202)
|+..|+... ..+||+.+|++++.+
T Consensus 49 g~~~~~~~~-l~~l~~~l~~~~~~l 72 (74)
T 1y7y_A 49 GQRNVSLVN-ILKLATALDIEPREL 72 (74)
T ss_dssp TCSCCBHHH-HHHHHHHTTSCGGGG
T ss_pred CCCCCCHHH-HHHHHHHhCcCHHHH
Confidence 666676655 468999999987643
No 132
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.21 E-value=1.1e+02 Score=21.15 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCe
Q psy397 38 PSVKKTDIREKLSKMFKSKPEN 59 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dl 59 (202)
++-+-.++|++|+...|++++.
T Consensus 27 ~~~TV~~lK~ki~~~~gip~~~ 48 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVVGSPASC 48 (95)
T ss_dssp TTSBHHHHHHHHHHHTCSCTTT
T ss_pred ccCHHHHHHHHHHHHHCCCHHH
Confidence 4567799999999999997554
No 133
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=21.94 E-value=2e+02 Score=19.94 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
+-|..-. ...+.+||++.+++ +|. ...+.+.. .. .|++.|||.| |.+.+.+++
T Consensus 38 l~V~nlp-~~~t~~~l~~~F~~-~G~-v~~v~i~~--~~--~g~~~g~afV~f~~~~~A~~ 91 (124)
T 2kt5_A 38 LLVSNLD-FGVSDADIQELFAE-FGT-LKKAAVDY--DR--SGRSLGTADVHFERRADALK 91 (124)
T ss_dssp EEEESCC-SSCCHHHHHHHHHT-TSC-CSEEEEEC--CS--SSSCCSEEEEEESSHHHHHH
T ss_pred EEEeCCC-CCCCHHHHHHHHHh-cCC-eeEEEEEE--CC--CCCEeeEEEEEECCHHHHHH
Confidence 3344432 56788999888765 553 22333221 12 4556677766 677766654
No 134
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=21.89 E-value=52 Score=27.43 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=33.4
Q ss_pred ccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCE
Q psy397 23 LGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGK 73 (202)
Q Consensus 23 L~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGk 73 (202)
+...++..-+.|++ -..+.+.+++.+|.+++.++...+ .+||..-
T Consensus 264 l~~~did~~v~Hq~-----~~~i~~~~~~~Lgl~~~~~~~~~l-~~~GNts 308 (350)
T 4ewp_A 264 VEPEDLAAFIPHQA-----NMRIIDEFAKQLKLPESVVVARDI-ADAGNTS 308 (350)
T ss_dssp CCGGGEEEEEECCS-----CHHHHHHHHHHTTCCTTSEECCTH-HHHCBCG
T ss_pred CChhHhceEEecCC-----CHHHHHHHHHHcCcChHhEEeccc-ccccchH
Confidence 34567888899987 356788999999999888776555 3577543
No 135
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=21.81 E-value=1.9e+02 Score=21.27 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=27.4
Q ss_pred cCccc-eeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeE
Q psy397 21 RLLGR-KQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENI 60 (202)
Q Consensus 21 pLL~R-REv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlV 60 (202)
.|+.. .++.|.|.- ..++.||++.+-++||++...|
T Consensus 22 ~~~e~~n~~~F~V~~----~AnK~eIK~AVE~lf~VkV~~V 58 (93)
T 3r8s_T 22 TAMEKSNTIVLKVAK----DATKAEIKAAVQKLFEVEVEVV 58 (93)
T ss_dssp HHHHTTSEEEEEECS----SCCHHHHHHHHHHHSCCCCCEE
T ss_pred HHHHhCCEEEEEECC----CCCHHHHHHHHHHHcCCceEEE
Confidence 34454 678888753 4689999999999999976554
No 136
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=21.76 E-value=40 Score=21.94 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=23.0
Q ss_pred CHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 41 KKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 41 SRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
+.+++++.++ .+|. ...+.+. . ..|++.|||.| |++.+.+++
T Consensus 20 t~~~l~~~F~-~~G~-i~~v~i~---~--~~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 20 LKNVIHKIFS-KFGK-ITNDFYP---E--EDGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp HHHHHHHHHH-TTCC-EEEEECC---C--BTTBCCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHh-hcCC-eEEEEec---C--CCCcEeEEEEEEECCHHHHHH
Confidence 3466666653 4553 2223322 2 34577788876 777776654
No 137
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=21.72 E-value=2e+02 Score=19.80 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKKF 90 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK~ 90 (202)
...+.+||++-+++ +|.=.+. .+...-..|++.|||.| |.+.+.+++.
T Consensus 46 ~~~t~~~l~~~F~~-~G~i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 46 YGSTAQDLEAHFSS-CGSINRI----TILCDKFSGHPKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp TTCCHHHHHHHHHT-TSCEEEE----EEEEECTTSSCEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCEEEE----EEEecCCCCCcccEEEEEECCHHHHHHH
Confidence 34678888887754 4521111 12222245666777765 7777766543
No 138
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=21.69 E-value=37 Score=21.20 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCe
Q psy397 36 GKPSVKKTDIREKLSKMFKSKPEN 59 (202)
Q Consensus 36 GkaTPSRkEIreKLAamlnvd~dl 59 (202)
|+..|+... ..+||+.||++++.
T Consensus 46 g~~~~~~~~-l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 46 GDRAVTVQR-LAELADFYGVPVQE 68 (71)
T ss_dssp TCSCCCHHH-HHHHHHHHTSCGGG
T ss_pred CCCCCCHHH-HHHHHHHHCcCHHH
Confidence 555666544 56899999998764
No 139
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=21.64 E-value=1.8e+02 Score=19.48 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++.+.+ +|. ...|.+ ...-..|++.|||.| |.+.+.+++
T Consensus 23 ~~~t~~~l~~~F~~-~G~-i~~v~i---~~~~~~g~~~g~afV~f~~~~~A~~ 70 (106)
T 2dgp_A 23 RNLDEKDLKPLFEE-FGK-IYELTV---LKDRFTGMHKGCAFLTYCERESALK 70 (106)
T ss_dssp TTCCHHHHHHHHHH-HSC-CCEEEC---CCCSSSCSCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEE---EecCCCCCcceEEEEEECCHHHHHH
Confidence 56889999988865 553 222222 122223455666666 566655543
No 140
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=21.58 E-value=91 Score=25.41 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=24.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 30 VDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 30 fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
+++..+| .+|...-+.|++.+|.+++.++.+|
T Consensus 216 lei~~~~---~~K~~~l~~l~~~~~~~~~~~~~~G 247 (301)
T 2b30_A 216 AEVTKLG---HDKYTGINYLLKHYNISNDQVLVVG 247 (301)
T ss_dssp EEEEETT---CCHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred eEecCCC---CCcHHHHHHHHHHcCCCHHHEEEEC
Confidence 4455544 6788899999999999877776664
No 141
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=21.58 E-value=1.9e+02 Score=19.46 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=23.8
Q ss_pred eeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEE
Q psy397 26 KQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFA 62 (202)
Q Consensus 26 REv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVV 62 (202)
+.+.++|. ++-+-.++|++|++..|++++..-+
T Consensus 15 ~~~~~~v~----~~~TV~~LK~~I~~~~gip~~~qrL 47 (88)
T 2hj8_A 15 RSSTYEVR----LTQTVAHLKQQVSGLEGVQDDLFWL 47 (88)
T ss_dssp CEEEEEEE----SSSBHHHHHHHHHHHTCSCTTTEEE
T ss_pred CEEEEEEC----CCCcHHHHHHHHHHHhCCChhHEEE
Confidence 34455553 4456899999999999998665544
No 142
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.31 E-value=1.4e+02 Score=20.09 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.+++ +|. |.--.+...--.|++.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 72 (111)
T 1x4h_A 25 FDSEEEALGEVLQQ-FGD----LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQK 72 (111)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCBCSSSCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEEEEEecCCCCCCccEEEEEECCHHHHHH
Confidence 45788999888854 452 111122222234556677766 666666543
No 143
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=21.09 E-value=1.2e+02 Score=22.35 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=28.0
Q ss_pred eccCccceeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCC
Q psy397 19 TNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPE 58 (202)
Q Consensus 19 eNpLL~RREv~fdV~HpGkaTPSRkEIreKLAamlnvd~d 58 (202)
...|+...++.|.|.- ..++.||++.+-++|+++..
T Consensus 15 a~~~~e~n~~~F~V~~----~AnK~qIK~aVe~lf~VkV~ 50 (92)
T 3tve_T 15 AYAGFAEGKYTFWVHP----KATKTEIKNAVETAFKVKVV 50 (92)
T ss_dssp HHTTTTTTEEEEEECT----TCCHHHHHHHHHHHTTCCEE
T ss_pred HHHHhhCCEEEEEECC----CCCHHHHHHHHHHHhCCcee
Confidence 3456666888888753 46899999999999998643
No 144
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.08 E-value=1.1e+02 Score=20.50 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++-+++ +|. |.--.+...-..+++.|||.| |.+.+.+++
T Consensus 23 ~~~t~~~l~~~f~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 70 (103)
T 2dnm_A 23 YRTSPDSLRRVFEK-YGR----VGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70 (103)
T ss_dssp TTCCHHHHHHHHTT-TSC----EEEEECCBCSSSCSBCSCEEEEESSSSHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EEEEEEEeCCCCCCCCeEEEEEECCHHHHHH
Confidence 45788898887754 443 221222222233556666666 666555543
No 145
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.72 E-value=1.9e+02 Score=19.01 Aligned_cols=33 Identities=3% Similarity=-0.008 Sum_probs=23.7
Q ss_pred eeEEEEEEcCCCCCCCHHHHHHHHHhHhCCCCCeEEE
Q psy397 26 KQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFA 62 (202)
Q Consensus 26 REv~fdV~HpGkaTPSRkEIreKLAamlnvd~dlVVV 62 (202)
+.+.++|. ++-+-.++|++|++..+++++..-+
T Consensus 18 ~~~~~~v~----~~~tV~~lK~~i~~~~gi~~~~qrL 50 (87)
T 1wh3_A 18 GSYAYAIN----PNSFILGLKQQIEDQQGLPKKQQQL 50 (87)
T ss_dssp EEEEEEEC----SSSBHHHHHHHHHHHTCCCTTTEEE
T ss_pred CEEEEEeC----CCChHHHHHHHHHHHhCCChHHEEE
Confidence 44455543 4556899999999999998665544
No 146
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.61 E-value=1.4e+02 Score=20.45 Aligned_cols=47 Identities=11% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
...+.++|++.++ .||.=.+..++. .-..|++.|||.| |.+.+.+++
T Consensus 37 ~~~te~~l~~~F~-~~G~i~~v~i~~----~~~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 37 FETTEESLRNYYE-QWGKLTDCVVMR----DPASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp TCCCHHHHHHHHT-SSCCCSEEEEEC----CTTTSSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCCEEEEEEEE----CCCCCCcCceEEEEeCCHHHHHH
Confidence 5678889988774 455422333332 2233556677766 667766554
No 147
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.47 E-value=71 Score=25.16 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=19.1
Q ss_pred CHHHHHHHHHhHhCCCCCeEEEec
Q psy397 41 KKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 41 SRkEIreKLAamlnvd~dlVVVfg 64 (202)
-.+++++++|+.++++++.|++.+
T Consensus 44 ~~~~~~~~la~~~~~~~~~i~~~~ 67 (382)
T 4hvk_A 44 AVQEAREKVAKLVNGGGGTVVFTS 67 (382)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEES
T ss_pred HHHHHHHHHHHHcCCCcCeEEEEC
Confidence 345899999999999887776643
No 148
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=20.34 E-value=69 Score=26.58 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHhHhCCCCCeEEEec
Q psy397 35 PGKPSVKKTDIREKLSKMFKSKPENIFAFG 64 (202)
Q Consensus 35 pGkaTPSRkEIreKLAamlnvd~dlVVVfg 64 (202)
.+-+++.+.++.++||+.++++++.|++.+
T Consensus 80 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 109 (433)
T 1zod_A 80 SEMLSRPVVDLATRLANITPPGLDRALLLS 109 (433)
T ss_dssp TTCCCHHHHHHHHHHHHHSCTTCCEEEEES
T ss_pred cccCCHHHHHHHHHHHHhCCCCcCEEEEeC
Confidence 344566789999999999998888887764
No 149
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=20.34 E-value=51 Score=27.60 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHhHhCCCCCeEEEeceee
Q psy397 37 KPSVKKTDIREKLSKMFKSKPENIFAFGFQT 67 (202)
Q Consensus 37 kaTPSRkEIreKLAamlnvd~dlVVVfg~kT 67 (202)
|=.|=|.++|+.||+.+++++++|-|+-=-|
T Consensus 127 Kl~p~~~~mr~~la~~L~i~~~~VnVKATT~ 157 (183)
T 3f0d_A 127 KLAPHIDAMRANIAADLDLPLDRVNVKAKTN 157 (183)
T ss_dssp CCGGGHHHHHHHHHHHHTCCGGGEEEEEECC
T ss_pred cchhHHHHHHHHHHHHHCCCcceEEEEEecC
Confidence 4678899999999999999999998865433
No 150
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.26 E-value=41 Score=21.39 Aligned_cols=25 Identities=0% Similarity=0.029 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCeEE
Q psy397 36 GKPSVKKTDIREKLSKMFKSKPENIF 61 (202)
Q Consensus 36 GkaTPSRkEIreKLAamlnvd~dlVV 61 (202)
|+..|+. +...+||+.||++++.++
T Consensus 44 g~~~~~~-~~l~~ia~~l~v~~~~l~ 68 (73)
T 3omt_A 44 NDVQPSL-ETLFDIAEALNVDVRELI 68 (73)
T ss_dssp TSSCCCH-HHHHHHHHHHTSCGGGGB
T ss_pred CCCCCCH-HHHHHHHHHHCcCHHHHh
Confidence 5555655 455799999999877554
No 151
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=20.26 E-value=34 Score=20.83 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHhHhCCCCCeEE
Q psy397 36 GKPSVKKTDIREKLSKMFKSKPENIF 61 (202)
Q Consensus 36 GkaTPSRkEIreKLAamlnvd~dlVV 61 (202)
|+..|+.. ...+||+.+|++++.++
T Consensus 37 g~~~~~~~-~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 37 NKYNPSLQ-LALKIAYYLNTPLEDIF 61 (66)
T ss_dssp TSCCCCHH-HHHHHHHHTTSCHHHHE
T ss_pred CCCCCCHH-HHHHHHHHHCcCHHHHh
Confidence 65666554 45689999999876554
No 152
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=20.13 E-value=86 Score=22.68 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhHhCCCCCeEEEec-eeecCCCCEEEEEEEEeCCHHHHHhcCcceeeeeCCccceeeee
Q psy397 40 VKKTDIREKLSKMFKSKPENIFAFG-FQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLI 108 (202)
Q Consensus 40 PSRkEIreKLAamlnvd~dlVVVfg-~kT~FGgGkStGfA~IYDS~E~aKK~EPKyrL~Rngl~ek~~~~ 108 (202)
-++.++-+++++.+|++++.++.+| =.+-.-+.+..|..-++...+.++ -.+.|++..|.+.+-+-++
T Consensus 141 k~k~~~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~~~~~~l~-~~ad~v~~~~dl~~~~~~~ 209 (217)
T 3m1y_A 141 HSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLK-QHATHCINEPDLALIKPLI 209 (217)
T ss_dssp THHHHHHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEESCCHHHH-TTCSEEECSSBGGGGTTC-
T ss_pred CChHHHHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEECccHHHH-HhcceeecccCHHHHHHHh
Confidence 3457888889999999866655543 223222333334444556666665 4588999888877655443
No 153
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.11 E-value=2e+02 Score=19.13 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhHhCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q psy397 38 PSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGFALI-YDSIDLAKK 89 (202)
Q Consensus 38 aTPSRkEIreKLAamlnvd~dlVVVfg~kT~FGgGkStGfA~I-YDS~E~aKK 89 (202)
.+.+.++|++-+++ +|.=.+.-++ ..-++ +.|||.| |.+.+.+++
T Consensus 25 ~~~t~~~l~~~f~~-~G~v~~v~i~----~~~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cq3_A 25 FRFRDPDLRQMFGQ-FGKILDVEII----FNERG--SKGFGFVTFENSADADR 70 (103)
T ss_dssp TTCCHHHHHHHGGG-TSCEEEEEEE----CCTTT--TCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCeEEEEEE----ecCCC--CcEEEEEEECCHHHHHH
Confidence 56788898877754 5531122222 12222 5666666 777776654
No 154
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=20.02 E-value=57 Score=22.88 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=13.7
Q ss_pred CCCCHHHHHHHHHhHh-CCC
Q psy397 38 PSVKKTDIREKLSKMF-KSK 56 (202)
Q Consensus 38 aTPSRkEIreKLAaml-nvd 56 (202)
.|.+++.||..|.+.| |+|
T Consensus 31 ~tvT~K~VR~~Le~~~pg~d 50 (70)
T 1q1v_A 31 EEVTMKQICKKVYENYPTYD 50 (70)
T ss_dssp GGCCHHHHHHHHHHHCSSSC
T ss_pred HHHhHHHHHHHHHHHccCCC
Confidence 4677777777777777 765
Done!