RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy397
         (202 letters)



>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus
          abyssi [TaxId: 29292]}
          Length = 93

 Score =  140 bits (354), Expect = 4e-44
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query: 12 IKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGG 71
          IK  +   N+L+GRK++  ++ HPG+P+  + D++ KL  M    PE       ++ FG 
Sbjct: 3  IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGS 62

Query: 72 GKSTGFALIYDSIDLAKKFEPKYRLQR 98
           KS G+A  Y   D     EP+Y L R
Sbjct: 63 YKSKGYAKYYYDKDRMLYIEPEYILIR 89


>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma
          acidophilum [TaxId: 2303]}
          Length = 98

 Score =  136 bits (345), Expect = 1e-42
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          + IK ++   N +L RK++   +      +  + +I+E ++K      E +     +   
Sbjct: 3  LIIKEKR--DNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLT 60

Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          G  +  G+  IY     A  +EP Y L R
Sbjct: 61 GKHEIEGYTKIYADKPSAMLYEPDYELIR 89


>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus
          maripaludis [TaxId: 39152]}
          Length = 102

 Score =  131 bits (332), Expect = 1e-40
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          ++I + +   N LL R+++   V      +    D++ KL  +  +  + +        F
Sbjct: 3  ISIISDRN--NPLLQRREIKFTVSFDA-ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIF 59

Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          G  ++ G+A IY+        E K  L++
Sbjct: 60 GKLEAEGYAKIYNDEKAMATIETKSVLEK 88


>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina
          mazei [TaxId: 2209]}
          Length = 101

 Score =  121 bits (305), Expect = 1e-36
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 10 VTIKTRKYMTNRLLGRKQMVVDVLHPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNF 69
          + I   K   N LL R+++   V + G  +  + D+R KL+ M  +  E +     +T +
Sbjct: 3  IKIIKDKK--NPLLNRRELDFIVKYEG-STPSRNDVRNKLAAMLNAPLELLVIQRIKTEY 59

Query: 70 GGGKSTGFALIYDSIDLAKKFEPKYRLQR 98
          G  +S G+A +Y+  D  K+ E +Y L+R
Sbjct: 60 GMQESKGYAKLYEDADRMKQVEQEYVLKR 88


>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 194

 Score = 29.9 bits (66), Expect = 0.12
 Identities = 17/127 (13%), Positives = 29/127 (22%), Gaps = 13/127 (10%)

Query: 57  PENIFAFGFQTNFGGGKSTGFALIYDSIDLAKKFEPKYRLQRVSTKSLLVLIIATIGITS 116
           P  +F  G     G GK T             +   KY    +S   LL           
Sbjct: 1   PLVVFVLGGP---GAGKGT----------QCARIVEKYGYTHLSAGELLRDERKNPDSQY 47

Query: 117 CQEAEHKIDHSELVFDHICFSYASLYPLEDKIEIPPIILNRNVCWSLSMSKVLALSSYIK 176
            +  E  I   ++V   I  S       +               +  +   +   +  + 
Sbjct: 48  GELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMD 107

Query: 177 WCTSYHC 183
                  
Sbjct: 108 GKADVSF 114


>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889
          {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 93

 Score = 24.6 bits (54), Expect = 3.7
 Identities = 8/28 (28%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 24 GRKQMVVDVLHPGKPSVKKTDIREKLSK 51
          G  ++V+D+L P +P +   +  + LS+
Sbjct: 3  GLIRIVLDILKPHEPII--PEYAKYLSE 28


>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
          albicans) [TaxId: 5476]}
          Length = 440

 Score = 25.2 bits (54), Expect = 7.3
 Identities = 12/44 (27%), Positives = 16/44 (36%)

Query: 34 HPGKPSVKKTDIREKLSKMFKSKPENIFAFGFQTNFGGGKSTGF 77
          HP  PS       + L  +  +KP+        T FG  K   F
Sbjct: 53 HPSVPSKAIDLNNQTLRDLVTAKPQEYLGESIITKFGSSKELPF 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 735,615
Number of extensions: 32197
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 12
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)